run.py
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# coding=utf-8
import StringIO
import datetime
import gzip
import json
import logging
import random
import tarfile
import time
import urllib
import cdf
from csv import writer as csv_writer
from math import sqrt
from os import environ, remove as removefile
from os.path import isfile, join, abspath, dirname
from flask import Flask
from flask import request
from flask import url_for, send_from_directory, abort as abort_flask
from jinja2 import Environment, FileSystemLoader, Markup
from netCDF4 import Dataset, date2num
from yaml import load as yaml_load
# PATH RELATIVITY #############################################################
THIS_DIRECTORY = dirname(abspath(__file__))
def get_path(relative_path):
"""Get an absolute path from the relative path to this script directory."""
return abspath(join(THIS_DIRECTORY, relative_path))
# COLLECT GLOBAL INFORMATION FROM SOURCES #####################################
# VERSION
with open(get_path('../VERSION'), 'r') as version_file:
version = version_file.read().strip()
# CONFIG
with open(get_path('../config.yml'), 'r') as config_file:
config = yaml_load(config_file.read())
FILE_DATE_FMT = "%Y-%m-%dT%H:%M:%S"
# LOGGING #####################################################################
LOG_FILE = get_path('run.log')
log = logging.getLogger("HelioPropa")
log.setLevel(logging.DEBUG)
# log.setLevel(logging.ERROR) # <-- set log level here !
logHandler = logging.FileHandler(LOG_FILE)
logHandler.setFormatter(logging.Formatter(
"%(asctime)s - %(levelname)s - %(message)s"
))
log.addHandler(logHandler)
# HARDCODED CONFIGURATION #####################################################
# Absolute path to the data cache directory
CACHE_DIR = get_path('../cache')
# These two configs are not in the YAML config because adding a new parameter
# will not work as-is, you'll have to edit some netcdf-related code.
# The slugs of the available parameters in the generated CSV files.
# The order matters. If you change this you also need to change the
# innermost loop of `get_data_for_target`.
# The javascript knows the targets' properties under these names.
PROPERTIES = ('time', 'vrad', 'vtan', 'vtot', 'btan', 'temp', 'pdyn', 'dens',
'angl', 'xhee', 'yhee')
# The parameters that the users can handle.
# The slug MUST be one of the properties above.
PARAMETERS = {
'pdyn': {
'slug': 'pdyn',
'name': 'Dyn. Pressure',
'title': 'The dynamic pressure.',
'units': 'nPa',
'active': True,
'position': 10,
},
'vtot': {
'slug': 'vtot',
'name': 'Velocity',
'title': 'The velocity of the particles.',
'units': 'km/s',
'active': False,
'position': 20,
},
'btan': {
'slug': 'btan',
'name': 'B Tangential',
'title': 'B Tangential.',
'units': 'nT',
'active': False,
'position': 30,
},
'temp': {
'slug': 'temp',
'name': 'Temperature',
'title': 'The temperature.',
'units': 'eV',
'active': False,
'position': 40,
},
'dens': {
'slug': 'dens',
'name': 'Density',
'title': 'The density N.',
'units': 'cm^-3',
'active': False,
'position': 50,
},
'angl': {
'slug': 'angl',
'name': 'Angle T-S-E',
'title': 'Angle Target-Sun-Earth.',
'units': 'deg',
'active': False,
'position': 60,
},
}
# SETUP FLASK ENGINE ##########################################################
app = Flask(__name__, root_path=THIS_DIRECTORY)
app.debug = environ.get('DEBUG') == 'true'
if app.debug:
log.info("Starting Flask app IN DEBUG MODE...")
else:
log.info("Starting Flask app...")
# SETUP JINJA2 TEMPLATE ENGINE ################################################
def static_global(filename):
return url_for('static', filename=filename)
def shuffle_filter(seq):
"""
This shuffles the sequence it is applied to.
Jinja2 _should_ provide this.
"""
try:
result = list(seq)
random.shuffle(result)
return result
except:
return seq
def markdown_filter(value, nl2br=False, p=True):
"""
Converts markdown into html.
nl2br: set to True to replace line breaks with <br> tags
p: set to False to remove the enclosing <p></p> tags
"""
from markdown import markdown
from markdown.extensions.nl2br import Nl2BrExtension
from markdown.extensions.abbr import AbbrExtension
extensions = [AbbrExtension()]
if nl2br is True:
extensions.append(Nl2BrExtension())
markdowned = markdown(value, output_format='html5', extensions=extensions)
if p is False:
markdowned = markdowned.replace(r"<p>", "").replace(r"</p>", "")
return markdowned
_js_escapes = {
'\\': '\\u005C',
'\'': '\\u0027',
'"': '\\u0022',
'>': '\\u003E',
'<': '\\u003C',
'&': '\\u0026',
'=': '\\u003D',
'-': '\\u002D',
';': '\\u003B',
u'\u2028': '\\u2028',
u'\u2029': '\\u2029'
}
# Escape every ASCII character with a value less than 32.
_js_escapes.update(('%c' % z, '\\u%04X' % z) for z in xrange(32))
def escapejs_filter(value):
escaped = []
for letter in value:
if letter in _js_escapes:
escaped.append(_js_escapes[letter])
else:
escaped.append(letter)
return Markup("".join(escaped))
tpl_engine = Environment(loader=FileSystemLoader([get_path('view')]),
trim_blocks=True,
lstrip_blocks=True)
tpl_engine.globals.update(
url_for=url_for,
static=static_global,
)
tpl_engine.filters['markdown'] = markdown_filter
tpl_engine.filters['md'] = markdown_filter
tpl_engine.filters['shuffle'] = shuffle_filter
tpl_engine.filters['escapejs'] = escapejs_filter
tpl_global_vars = {
'request': request,
'version': version,
'config': config,
'now': datetime.datetime.now(),
}
# HELPERS #####################################################################
def abort(code, message):
log.error(message)
abort_flask(code, message)
def render_view(view, context=None):
"""
A simple helper to render [view] template with [context] vars.
It automatically adds the global template vars defined above, too.
It returns a string, usually the HTML contents to display.
"""
context = {} if context is None else context
return tpl_engine.get_template(view).render(
dict(tpl_global_vars.items() + context.items())
)
# def render_page(page, title="My Page", context=None):
# """
# A simple helper to render the md_page.html template with [context] vars &
# the additional contents of `page/[page].md` in the `md_page` variable.
# It automagically adds the global template vars defined above, too.
# It returns a string, usually the HTML contents to display.
# """
# if context is None:
# context = {}
# context['title'] = title
# context['md_page'] = ''
# with file(get_path('page/%s.md' % page)) as f:
# context['md_page'] = f.read()
# return tpl_engine.get_template('md_page.html').render(
# dict(tpl_global_vars.items() + context.items())
# )
def is_list_in_list(needle, haystack):
for n in needle:
if n not in haystack:
return False
return True
def round_time(dt=None, round_to=60):
"""
Round a datetime object to any time laps in seconds
dt : datetime.datetime object, default now.
roundTo : Closest number of seconds to round to, default 1 minute.
"""
if dt is None:
dt = datetime.datetime.now()
seconds = (dt.replace(tzinfo=None) - dt.min).seconds
rounding = (seconds + round_to / 2) // round_to * round_to
return dt + datetime.timedelta(0, rounding-seconds, -dt.microsecond)
def datetime_from_list(time_list):
"""
Datetimes in retrieved CDFs are stored as lists of numbers,
with DayOfYear starting at 0. We want it starting at 1 because it's what
vendor parsers use, both in python and javascript.
"""
# Day Of Year starts at 0, but for our datetime parser it starts at 1
doy = '{:03d}'.format(int(''.join(time_list[4:7])) + 1)
return datetime.datetime.strptime(
"%s%s%s" % (''.join(time_list[0:4]), doy, ''.join(time_list[7:])),
"%Y%j%H%M%S%f"
)
def get_local_filename(url):
"""
Build the local cache filename for the distant file
:param url: string
:return: string
"""
from slugify import slugify
n = len('http://')
if url.startswith('https'):
n += 1
s = url[n:]
return slugify(s)
def get_target_config(slug):
for s in config['targets']: # dumb
if s['slug'] == slug:
return s
raise Exception("No target found in configuration for '%s'." % slug)
def check_target_config(slug):
get_target_config(slug)
def retrieve_amda_netcdf(orbiter, what, started_at, stopped_at):
"""
Handles remote querying Myriam's API, downloading, extracting and caching
the netCDF files.
:param orbiter: key of the source in the YAML config
:param what: either 'model' or 'orbit', a key in the config of the source
:param started_at:
:param stopped_at:
:return: a list of local file paths to netCDF (.nc) files
"""
url = config['amda'].format(
dataSet=what,
startTime=started_at.isoformat(),
stopTime=stopped_at.isoformat()
)
log.info("Fetching remote gzip files list at '%s'." % url)
retries = 0
success = False
errors = []
remote_gzip_files = []
while not success and retries < 3:
try:
response = urllib.urlopen(url)
remote_gzip_files = json.loads(response.read())
if not remote_gzip_files:
raise Exception("Failed to fetch data at '%s'." % url)
if remote_gzip_files == 'NODATASET':
raise Exception("API says there's no dataset at '%s'." % url)
if remote_gzip_files == 'ERROR':
raise Exception("API returned an error at '%s'." % url)
if remote_gzip_files == ['OUTOFTIME']: # it happens
return []
# raise Exception("API says it's out of time at '%s'." % url)
success = True
except Exception as e:
log.warn("Failed (%d/3) '%s' : %s" % (retries+1, url, e.message))
remote_gzip_files = []
errors.append(e)
finally:
retries += 1
if not remote_gzip_files:
abort(400, "Failed to fetch gzip files list for %s at '%s' : %s" %
(orbiter, url, errors))
else:
remote_gzip_files = list(set(remote_gzip_files))
log.debug("Fetched remote gzip files list : %s." % str(remote_gzip_files))
local_gzip_files = []
for remote_gzip_file in remote_gzip_files:
# hotfixes to remove when fixed upstream @Myriam
if remote_gzip_file in ['OUTOFTIME', 'ERROR']:
continue # sometimes half the response is okay, the other not
if remote_gzip_file.endswith('/.gz'):
continue # this is just a plain bug
remote_gzip_file = remote_gzip_file.replace('cdpp1', 'cdpp', 1)
################################################
local_gzip_file = join(CACHE_DIR, get_local_filename(remote_gzip_file))
local_gzip_files.append(local_gzip_file)
if not isfile(local_gzip_file):
log.debug("Retrieving '%s'..." % local_gzip_file)
urllib.urlretrieve(remote_gzip_file, local_gzip_file)
log.debug("Retrieved '%s'." % local_gzip_file)
else:
log.debug("Found '%s' in the cache." % local_gzip_file)
local_netc_files = []
for local_gzip_file in local_gzip_files:
local_netc_file = local_gzip_file[0:-3]
log.debug("Unzipping '%s'..." % local_gzip_file)
success = True
try:
with gzip.open(local_gzip_file, 'rb') as f:
file_content = f.read()
with open(local_netc_file, 'w+b') as g:
g.write(file_content)
except Exception as e:
success = False
log.error("Cannot process gz file '%s' from '%s' : %s" %
(local_gzip_file, url, e))
# Sometimes, the downloaded gz is corrupted, and CRC checks fail.
# We want to delete the local gz file and try again next time.
removefile(local_gzip_file)
if success:
local_netc_files.append(local_netc_file)
log.debug("Unzipped '%s'." % local_gzip_file)
return list(set(local_netc_files)) # remove possible dupes
def get_data_for_target(target_config, started_at, stopped_at):
"""
:return: dict whose keys are datetime as str, values tuples of data
"""
log.debug("Grabbing data for '%s'..." % target_config['slug'])
try:
models = target_config['models']
except Exception as e:
abort(500, "Invalid model configuration for '%s' : %s"
% (target_config['slug'], str(e)))
try:
orbits = target_config['orbit']['models']
except Exception as e:
abort(500, "Invalid orbit configuration for '%s' : %s"
% (target_config['slug'], str(e)))
def _sta_sto(_cnf, _sta, _sto):
if 'started_at' in _cnf:
_s0 = datetime.datetime.strptime(_cnf['started_at'], FILE_DATE_FMT)
_s0 = max(_s0, _sta)
else:
_s0 = _sta
if 'stopped_at' in _cnf:
_s1 = datetime.datetime.strptime(_cnf['stopped_at'], FILE_DATE_FMT)
_s1 = min(_s1, _sto)
else:
_s1 = _sto
return _s0, _s1
precision = "%Y-%m-%dT%H" # model and orbits times are only equal-ish
orbit_data = {} # keys are datetime as str, values arrays of XY
for orbit in orbits:
s0, s1 = _sta_sto(orbit, started_at, stopped_at)
orbit_files = retrieve_amda_netcdf(
target_config['slug'], orbit['slug'], s0, s1
)
for orbit_file in orbit_files:
log.debug("%s: opening orbit NETCDF4 '%s'..." %
(target_config['name'], orbit_file))
cdf_handle = Dataset(orbit_file, "r", format="NETCDF4")
times = cdf_handle.variables['Time'] # YYYY DOY HH MM SS .ms
try:
data_hee = cdf_handle.variables['HEE']
except KeyError:
data_hee = cdf_handle.variables['XYZ_HEE'] # p67 uses this
log.debug("%s: aggregating data from '%s'..." %
(target_config['name'], orbit_file))
for time, datum_hee in zip(times, data_hee):
try:
dtime = datetime_from_list(time)
except Exception as e:
log.error("Failed to parse time from %s." % time)
raise e
if s0 <= dtime <= s1:
dkey = round_time(dtime, 60*60).strftime(precision)
orbit_data[dkey] = datum_hee
cdf_handle.close()
all_data = {} # keys are datetime as str, values tuples of data
for model in models:
s0, s1 = _sta_sto(model, started_at, stopped_at)
model_files = retrieve_amda_netcdf(
target_config['slug'], model['slug'], s0, s1
)
for model_file in model_files:
# Time, StartTime, StopTime, V, B, N, T, Delta_angle, P_dyn
log.debug("%s: opening model NETCDF4 '%s'..." %
(target_config['name'], model_file))
cdf_handle = Dataset(model_file, "r", format="NETCDF4")
times = cdf_handle.variables['Time'] # YYYY DOY HH MM SS .ms
data_v = cdf_handle.variables['V']
data_b = cdf_handle.variables['B']
data_t = cdf_handle.variables['T']
data_n = cdf_handle.variables['N']
data_p = cdf_handle.variables['P_dyn']
data_d = cdf_handle.variables['Delta_angle']
log.debug("%s: aggregating data from '%s'..." %
(target_config['name'], model_file))
for time, datum_v, datum_b, datum_t, datum_n, datum_p, datum_d \
in zip(times, data_v, data_b, data_t, data_n, data_p, data_d):
vrad = datum_v[0]
vtan = datum_v[1]
try:
dtime = datetime_from_list(time)
except Exception as e:
log.error("Failed to parse time from %s." % time)
raise e
if s0 <= dtime <= s1:
dkey = round_time(dtime, 60*60).strftime(precision)
x_hee = None
y_hee = None
if dkey in orbit_data:
x_hee = orbit_data[dkey][0]
y_hee = orbit_data[dkey][1]
all_data[dkey] = (
dtime.strftime("%Y-%m-%dT%H:%M:%S+00:00"),
vrad, vtan, sqrt(vrad * vrad + vtan * vtan),
datum_b, datum_t, datum_n, datum_p, datum_d,
x_hee, y_hee
)
cdf_handle.close()
return all_data
def generate_csv_contents(target_slug, started_at, stopped_at):
target_config = get_target_config(target_slug)
log.debug("Crunching CSV contents for '%s'..." % target_config['name'])
si = StringIO.StringIO()
cw = csv_writer(si)
cw.writerow(PROPERTIES)
all_data = get_data_for_target(target_config, started_at, stopped_at)
log.debug("Writing and sorting CSV for '%s'..." % target_config['slug'])
for dkey in sorted(all_data):
cw.writerow(all_data[dkey])
log.info("Generated CSV contents for '%s'." % target_config['slug'])
return si.getvalue()
def generate_csv_file_if_needed(target_slug, started_at, stopped_at):
filename = "%s_%s_%s.csv" % (target_slug,
started_at.strftime(FILE_DATE_FMT),
stopped_at.strftime(FILE_DATE_FMT))
local_csv_file = join(CACHE_DIR, filename)
generate = True
if isfile(local_csv_file):
# It need to have more than one line to not be empty (headers)
with open(local_csv_file) as f:
cnt = 0
for _ in f:
cnt += 1
if cnt > 1:
generate = False
break
if generate:
log.info("Generating CSV '%s'..." % local_csv_file)
try:
with open(local_csv_file, mode="w+") as f:
f.write(generate_csv_contents(target_slug,
started_at=started_at,
stopped_at=stopped_at))
log.info("Generation of '%s' done." % filename)
except Exception as e:
log.error(e)
if isfile(local_csv_file):
log.warn("Removing failed CSV '%s'..." % local_csv_file)
removefile(local_csv_file)
abort(500, "Failed creating CSV '%s' : %s" % (filename, e))
def remove_all_files(in_directory):
"""
Will throw if something horrible happens.
Does not remove recursively (could be done with os.walk if needed).
Does not remove directories either.
:param in_directory: absolute path to directory
:return:
"""
import os
if not os.path.isdir(in_directory):
raise ValueError("No directory to clean at '%s'.")
removed_files = []
for file_name in os.listdir(in_directory):
file_path = os.path.join(in_directory, file_name)
if os.path.isfile(file_path):
os.remove(file_path)
removed_files.append(file_path)
return removed_files
def remove_files_created_before(date, in_directory):
"""
Will throw if something horrible happens.
Does not remove recursively (could be done with os.walk if needed).
Does not remove directories either.
:param date: datetime object
:param in_directory: absolute path to directory
:return:
"""
import os
import time
secs = time.mktime(date.timetuple())
if not os.path.isdir(in_directory):
raise ValueError("No directory to clean at '%s'.")
removed_files = []
for file_name in os.listdir(in_directory):
file_path = os.path.join(in_directory, file_name)
if os.path.isfile(file_path):
t = os.stat(file_path)
if t.st_ctime < secs:
os.remove(file_path)
removed_files.append(file_path)
return removed_files
def get_hit_counter():
hit_count_path = get_path("../VISITS")
if isfile(hit_count_path):
hit_count = int(open(hit_count_path).read())
else:
hit_count = 1
return hit_count
def increment_hit_counter():
hit_count_path = get_path("../VISITS")
if isfile(hit_count_path):
hit_count = int(open(hit_count_path).read())
hit_count += 1
else:
hit_count = 1
hit_counter_file = open(hit_count_path, 'w')
hit_counter_file.write(str(hit_count))
hit_counter_file.close()
return hit_count
tpl_global_vars['visits'] = get_hit_counter()
# ROUTING #####################################################################
@app.route('/favicon.ico')
def favicon(): # we want it served from the root, not from static/
return send_from_directory(
join(app.root_path, 'static', 'img'),
'favicon.ico', mimetype='image/vnd.microsoft.icon'
)
@app.route("/")
@app.route("/home.html")
@app.route("/index.html")
def home():
increment_hit_counter()
parameters = PARAMETERS.values()
parameters.sort(key=lambda x: x['position'])
return render_view('home.html.jinja2', {
'targets': config['targets'],
'parameters': parameters,
'planets': [s for s in config['targets'] if s['type'] == 'planet'],
'probes': [s for s in config['targets'] if s['type'] == 'probe'],
'comets': [s for s in config['targets'] if s['type'] == 'comet'],
'visits': get_hit_counter(),
})
@app.route("/<target>_<started_at>_<stopped_at>.csv")
def download_target_csv(target, started_at, stopped_at):
"""
Grab data and orbit data for the specified `target`,
rearrange it and return it as a CSV file.
`started_at` and `stopped_at` should be UTC.
"""
check_target_config(target)
try:
started_at = datetime.datetime.strptime(started_at, FILE_DATE_FMT)
except:
abort(400, "Invalid started_at parameter : '%s'." % started_at)
try:
stopped_at = datetime.datetime.strptime(stopped_at, FILE_DATE_FMT)
except:
abort(400, "Invalid stopped_at parameter : '%s'." % stopped_at)
filename = "%s_%s_%s.csv" % (target,
started_at.strftime(FILE_DATE_FMT),
stopped_at.strftime(FILE_DATE_FMT))
local_csv_file = join(CACHE_DIR, filename)
generate_csv_file_if_needed(target, started_at, stopped_at)
if not isfile(local_csv_file):
abort(500, "Could not cache CSV file at '%s'." % local_csv_file)
return send_from_directory(CACHE_DIR, filename)
@app.route("/<targets>_<started_at>_<stopped_at>.tar.gz")
def download_targets_tarball(targets, started_at, stopped_at):
"""
Grab data and orbit data for each of the specified `targets`,
in their own CSV file, and make a tarball of them.
`started_at` and `stopped_at` should be UTC strings.
Note: we do not use this route anymore, but let's keep it shelved for now.
targets: string list of targets' slugs, separated by `-`.
"""
separator = '-'
targets = targets.split(separator)
targets.sort()
targets_configs = []
for target in targets:
if not target:
abort(400, "Invalid targets format : `%s`." % targets)
targets_configs.append(get_target_config(target))
if 0 == len(targets_configs):
abort(400, "No valid targets specified. What are you doing?")
try:
started_at = datetime.datetime.strptime(started_at, FILE_DATE_FMT)
except:
abort(400, "Invalid started_at parameter : '%s'." % started_at)
try:
stopped_at = datetime.datetime.strptime(stopped_at, FILE_DATE_FMT)
except:
abort(400, "Invalid stopped_at parameter : '%s'." % stopped_at)
sta = started_at.strftime(FILE_DATE_FMT)
sto = stopped_at.strftime(FILE_DATE_FMT)
gzip_filename = "%s_%s_%s.tar.gz" % (separator.join(targets), sta, sto)
local_gzip_file = join(CACHE_DIR, gzip_filename)
if not isfile(local_gzip_file):
log.debug("Creating the CSV files for the tarball...")
for target_config in targets_configs:
filename = "%s_%s_%s.csv" % (target_config['slug'], sta, sto)
local_csv_file = join(CACHE_DIR, filename)
if not isfile(local_csv_file):
with open(local_csv_file, mode="w+") as f:
f.write(generate_csv_contents(target_config['slug'],
started_at=started_at,
stopped_at=stopped_at))
log.debug("Creating the tarball '%s'..." % local_gzip_file)
with tarfile.open(local_gzip_file, "w:gz") as tar:
for target_config in targets_configs:
filename = "%s_%s_%s.csv" % (target_config['slug'], sta, sto)
local_csv_file = join(CACHE_DIR, filename)
tar.add(local_csv_file, arcname=filename)
if not isfile(local_gzip_file):
abort(500, "No tarball to serve. Looked at '%s'." % local_gzip_file)
return send_from_directory(CACHE_DIR, gzip_filename)
@app.route("/<targets>_<params>_<started_at>_<stopped_at>.nc")
def download_targets_netcdf(targets, params, started_at, stopped_at):
"""
Grab data and orbit data for the specified `target`,
rearrange it and return it as a NetCDF file.
`started_at` and `stopped_at` are expected to be UTC.
targets: string list of targets' slugs, separated by `-`.
params: string list of targets' parameters, separated by `-`.
"""
separator = '-' # /!\ this char should never be in target's slugs
targets = targets.split(separator)
targets.sort()
targets_configs = []
for target in targets:
if not target:
abort(400, "Invalid targets format : `%s`." % targets)
targets_configs.append(get_target_config(target))
if 0 == len(targets_configs):
abort(400, "No valid targets specified. What are you doing?")
params = params.split(separator)
params.sort()
if 0 == len(params):
abort(400, "No valid parameters specified. What are you doing?")
if not is_list_in_list(params, PARAMETERS.keys()):
abort(400, "Some parameters are not recognized in '%s'." % str(params))
date_fmt = FILE_DATE_FMT
try:
started_at = datetime.datetime.strptime(started_at, date_fmt)
except:
abort(400, "Invalid started_at parameter : '%s'." % started_at)
try:
stopped_at = datetime.datetime.strptime(stopped_at, date_fmt)
except:
abort(400, "Invalid stopped_at parameter : '%s'." % stopped_at)
sta = started_at.strftime(date_fmt)
sto = stopped_at.strftime(date_fmt)
nc_filename = "%s_%s_%s_%s.nc" % \
(separator.join(targets), separator.join(params), sta, sto)
nc_path = join(CACHE_DIR, nc_filename)
if not isfile(nc_path):
log.debug("Creating the NetCDF file '%s'..." % nc_filename)
nc_handle = Dataset(nc_path, "w", format="NETCDF4")
try:
nc_handle.description = "Model and orbit data for targets" # todo
nc_handle.history = "Created " + time.ctime(time.time())
nc_handle.source = "Heliopropa (CDDP)"
available_params = list(PROPERTIES)
for target in targets_configs:
target_slug = target['slug']
log.debug("Adding group '%s' to the NetCDF..." % target_slug)
nc_group = nc_handle.createGroup(target_slug)
data = get_data_for_target(target, started_at, stopped_at)
dkeys = sorted(data)
dimension = 'dim_'+target_slug
nc_handle.createDimension(dimension, len(dkeys))
# TIME #
nc_time = nc_group.createVariable('time', 'i8', (dimension,))
nc_time.units = "hours since 1970-01-01 00:00:00"
nc_time.calendar = "standard"
times = []
for dkey in dkeys:
time_as_string = data[dkey][0][:-6] # remove +00:00 tail
date = datetime.datetime.strptime(time_as_string, date_fmt)
times.append(date2num(
date, units=nc_time.units, calendar=nc_time.calendar
))
nc_time[:] = times
# SELECTED PARAMETERS #
nc_vars = []
indices = []
for param in params:
indices.append(available_params.index(param))
nc_var = nc_group.createVariable(param, 'f8', (dimension,))
nc_var.units = PARAMETERS[param]['units']
nc_vars.append(nc_var)
for i, nc_var in enumerate(nc_vars):
index = indices[i]
values = []
for dkey in dkeys:
dval = data[dkey]
values.append(dval[index])
nc_var[:] = values
# ORBIT #
nc_x = nc_group.createVariable('xhee', 'f8', (dimension,))
nc_x.units = 'Au'
nc_y = nc_group.createVariable('yhee', 'f8', (dimension,))
nc_y.units = 'Au'
values_x = []
values_y = []
index_x = available_params.index('xhee')
index_y = available_params.index('yhee')
for dkey in dkeys:
dval = data[dkey]
values_x.append(dval[index_x])
values_y.append(dval[index_y])
nc_x[:] = values_x
nc_y[:] = values_y
log.debug("Writing NetCDF '%s'..." % nc_filename)
except Exception as e:
log.error("Failed to generate NetCDF '%s'." % nc_filename)
raise e
finally:
nc_handle.close()
if not isfile(nc_path):
abort(500, "No NetCDF to serve. Looked at '%s'." % nc_path)
return send_from_directory(CACHE_DIR, nc_filename)
@app.route("/<targets>_<started_at>_<stopped_at>.cdf")
def download_targets_cdf(targets, started_at, stopped_at):
"""
Grab data and orbit data for the specified `target`,
rearrange it and return it as a CDF file.
`started_at` and `stopped_at` are expected to be UTC.
targets: string list of targets' slugs, separated by `-`.
params: string list of targets' parameters, separated by `-`.
"""
separator = '-' # /!\ this char should never be in target's slugs
targets = targets.split(separator)
targets.sort()
targets_configs = []
for target in targets:
if not target:
abort(400, "Invalid targets format : `%s`." % targets)
targets_configs.append(get_target_config(target))
if 0 == len(targets_configs):
abort(400, "No valid targets specified. What are you doing?")
params = PARAMETERS.keys()
# params = params.split(separator)
# params.sort()
# if 0 == len(params):
# abort(400, "No valid parameters specified. What are you doing?")
# if not is_list_in_list(params, PARAMETERS.keys()):
# abort(400, "Some parameters are not recognized in '%s'." % str(params))
try:
started_at = datetime.datetime.strptime(started_at, FILE_DATE_FMT)
except:
abort(400, "Invalid started_at parameter : '%s'." % started_at)
try:
stopped_at = datetime.datetime.strptime(stopped_at, FILE_DATE_FMT)
except:
abort(400, "Invalid stopped_at parameter : '%s'." % stopped_at)
sta = started_at.strftime(FILE_DATE_FMT)
sto = stopped_at.strftime(FILE_DATE_FMT)
cdf_filename = "%s_%s_%s.cdf" % (separator.join(targets), sta, sto)
cdf_path = join(CACHE_DIR, cdf_filename)
if not isfile(cdf_path):
log.debug("Creating the CDF file '%s'..." % cdf_filename)
try:
cdf_handle = cdf.archive()
description = "Model and orbit data for %s." % \
', '.join([t['name'] for t in targets_configs])
cdf_handle.attributes['Description'] = description
cdf_handle.attributes['Author'] = "Heliopropa.irap.omp.eu (CDPP)"
cdf_handle.attributes['Created'] = str(time.ctime(time.time()))
available_params = list(PROPERTIES)
for target in targets_configs:
target_slug = target['slug']
data = get_data_for_target(target, started_at, stopped_at)
dkeys = sorted(data)
values = []
units = "hours since 1970-01-01 00:00:00"
calendar = "standard"
for dkey in dkeys:
time_as_string = data[dkey][0][:-6] # remove +00:00 tail
date = datetime.datetime.strptime(time_as_string, FILE_DATE_FMT)
values.append(date2num(date, units=units, calendar=calendar))
k = "%s_time" % target_slug
cdf_handle[k] = values
cdf_handle[k].attributes['units'] = units
for param in params:
k = "%s_%s" % (target_slug, param)
values = []
i = available_params.index(param)
for dkey in dkeys:
values.append(data[dkey][i])
cdf_handle[k] = values
cdf_handle[k].attributes['units'] = PARAMETERS[param]['units']
k_xhee = "%s_xhee" % target_slug
k_yhee = "%s_yhee" % target_slug
values_xhee = []
values_yhee = []
index_x = available_params.index('xhee')
index_y = available_params.index('yhee')
for dkey in dkeys:
values_xhee.append(data[dkey][index_x])
values_yhee.append(data[dkey][index_y])
cdf_handle[k_xhee] = values_xhee
cdf_handle[k_yhee] = values_yhee
cdf_handle[k_xhee].attributes['units'] = 'Au'
cdf_handle[k_yhee].attributes['units'] = 'Au'
log.debug("Writing CDF '%s'..." % cdf_filename)
cdf_handle.save(cdf_path)
except Exception as e:
log.error("Failed to generate CDF '%s'." % cdf_filename)
removefile(cdf_path)
raise
finally:
# cdf_handle.close()
pass
if not isfile(cdf_path):
abort(500, "No CDF to serve. Looked at '%s'." % cdf_path)
return send_from_directory(CACHE_DIR, cdf_filename)
# API #########################################################################
@app.route("/cache/clear")
def cache_clear():
"""
Removes all files from the cache.
Note: It also removes the .gitkeep file. Not a problem for prod.
"""
removed_files = remove_all_files(CACHE_DIR)
count = len(removed_files)
return "Cache cleared! Removed %d file%s." \
% (count, 's' if count != 1 else '')
@app.route("/cache/cleanup")
def cache_cleanup():
"""
Removes all files from the cache that are older than roughly one month.
Note: It also removes the .gitkeep file. Maybe it should not, but hey.
"""
a_month_ago = datetime.datetime.now() - datetime.timedelta(days=32)
removed_files = remove_files_created_before(a_month_ago, CACHE_DIR)
count = len(removed_files)
return "Cache cleaned! Removed %d old file%s." \
% (count, 's' if count != 1 else '')
@app.route("/cache/warmup")
def cache_warmup():
"""
Warms up the cache for the current day.
Linked to SpaceWeather#edit in swapp.ls to get the default time interval.
If you edit this code you'll need to edit the other as well and vice versa.
"""
# relativedelta(years=3)
# startted_at = datetime.datetime.now() - relativedelta(years=3)
return "To Do"
@app.route("/log")
def log_show():
with open(LOG_FILE, 'r') as f:
contents = f.read()
return contents
@app.route("/log/clear")
def log_clear():
with open(LOG_FILE, 'w') as f:
f.truncate()
return "Log cleared successfully."
# DEV TOOLS ###################################################################
# @app.route("/inspect")
# def analyze_cdf():
# """
# For debug purposes.
# """
# cdf_to_inspect = get_path("../res/dummy.nc")
# cdf_to_inspect = get_path("../res/dummy_jupiter_coordinates.nc")
#
# si = StringIO.StringIO()
# cw = csv.DictWriter(si, fieldnames=['Name', 'Shape', 'Length'])
# cw.writeheader()
#
# # Time, StartTime, StopTime, V, B, N, T, Delta_angle, P_dyn, QualityFlag
# cdf_handle = Dataset(cdf_to_inspect, "r", format="NETCDF4")
# for variable in cdf_handle.variables:
# v = cdf_handle.variables[variable]
# cw.writerow({
# 'Name': variable,
# 'Shape': v.shape,
# 'Length': v.size,
# })
# cdf_handle.close()
#
# return si.getvalue()
# MAIN ########################################################################
if __name__ == "__main__":
a = "2015171150000001"
# Debug mode on, as the production server does not use this but run.wsgi
extra_files = [get_path('../config.yml')]
app.run(debug=True, extra_files=extra_files)