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web/run.py 37.4 KB
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# coding=utf-8

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import StringIO
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import datetime
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import gzip
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import json
import logging
import random
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import tarfile
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import time
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import urllib
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import cdf
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from csv import writer as csv_writer
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from math import sqrt
from os import environ, remove as removefile
from os.path import isfile, join, abspath, dirname

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from flask import Flask
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from flask import request
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from flask import url_for, send_from_directory, abort as abort_flask
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from jinja2 import Environment, FileSystemLoader, Markup
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from netCDF4 import Dataset, date2num
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from yaml import load as yaml_load
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# PATH RELATIVITY #############################################################

THIS_DIRECTORY = dirname(abspath(__file__))


def get_path(relative_path):
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    """Get an absolute path from the relative path to this script directory."""
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    return abspath(join(THIS_DIRECTORY, relative_path))


# COLLECT GLOBAL INFORMATION FROM SOURCES #####################################

# VERSION
with open(get_path('../VERSION'), 'r') as version_file:
    version = version_file.read().strip()

# CONFIG
with open(get_path('../config.yml'), 'r') as config_file:
    config = yaml_load(config_file.read())

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FILE_DATE_FMT = "%Y-%m-%dT%H:%M:%S"

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# LOGGING #####################################################################

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LOG_FILE = get_path('run.log')

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log = logging.getLogger("HelioPropa")
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log.setLevel(logging.DEBUG)
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# log.setLevel(logging.ERROR)                        # <-- set log level here !
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logHandler = logging.FileHandler(LOG_FILE)
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logHandler.setFormatter(logging.Formatter(
    "%(asctime)s - %(levelname)s - %(message)s"
))
log.addHandler(logHandler)
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# HARDCODED CONFIGURATION #####################################################

# Absolute path to the data cache directory
CACHE_DIR = get_path('../cache')

# These two configs are not in the YAML config because adding a new parameter
# will not work as-is, you'll have to edit some netcdf-related code.

# The slugs of the available parameters in the generated CSV files.
# The order matters. If you change this you also need to change the
# innermost loop of `get_data_for_target`.
# The javascript knows the targets' properties under these names.
PROPERTIES = ('time', 'vrad', 'vtan', 'vtot', 'btan', 'temp', 'pdyn', 'dens',
              'angl', 'xhee', 'yhee')

# The parameters that the users can handle.
# The slug MUST be one of the properties above.
PARAMETERS = {
    'pdyn': {
        'slug': 'pdyn',
        'name': 'Dyn. Pressure',
        'title': 'The dynamic pressure.',
        'units': 'nPa',
        'active': True,
        'position': 10,
    },
    'vtot': {
        'slug': 'vtot',
        'name': 'Velocity',
        'title': 'The velocity of the particles.',
        'units': 'km/s',
        'active': False,
        'position': 20,
    },
    'btan': {
        'slug': 'btan',
        'name': 'B Tangential',
        'title': 'B Tangential.',
        'units': 'nT',
        'active': False,
        'position': 30,
    },
    'temp': {
        'slug': 'temp',
        'name': 'Temperature',
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        'title': 'The temperature.',
        'units': 'eV',
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        'active': False,
        'position': 40,
    },
    'dens': {
        'slug': 'dens',
        'name': 'Density',
        'title': 'The density N.',
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        'units': 'cm^-3',
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        'active': False,
        'position': 50,
    },
    'angl': {
        'slug': 'angl',
        'name': 'Angle T-S-E',
        'title': 'Angle Target-Sun-Earth.',
        'units': 'deg',
        'active': False,
        'position': 60,
    },
}


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# SETUP FLASK ENGINE ##########################################################

app = Flask(__name__, root_path=THIS_DIRECTORY)
app.debug = environ.get('DEBUG') == 'true'
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if app.debug:
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    log.info("Starting Flask app IN DEBUG MODE...")
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else:
    log.info("Starting Flask app...")
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# SETUP JINJA2 TEMPLATE ENGINE ################################################

def static_global(filename):
    return url_for('static', filename=filename)


def shuffle_filter(seq):
    """
    This shuffles the sequence it is applied to.
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    Jinja2 _should_ provide this.
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    """
    try:
        result = list(seq)
        random.shuffle(result)
        return result
    except:
        return seq


def markdown_filter(value, nl2br=False, p=True):
    """
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    Converts markdown into html.
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    nl2br: set to True to replace line breaks with <br> tags
    p: set to False to remove the enclosing <p></p> tags
    """
    from markdown import markdown
    from markdown.extensions.nl2br import Nl2BrExtension
    from markdown.extensions.abbr import AbbrExtension
    extensions = [AbbrExtension()]
    if nl2br is True:
        extensions.append(Nl2BrExtension())
    markdowned = markdown(value, output_format='html5', extensions=extensions)
    if p is False:
        markdowned = markdowned.replace(r"<p>", "").replace(r"</p>", "")
    return markdowned


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_js_escapes = {
        '\\': '\\u005C',
        '\'': '\\u0027',
        '"': '\\u0022',
        '>': '\\u003E',
        '<': '\\u003C',
        '&': '\\u0026',
        '=': '\\u003D',
        '-': '\\u002D',
        ';': '\\u003B',
        u'\u2028': '\\u2028',
        u'\u2029': '\\u2029'
}
# Escape every ASCII character with a value less than 32.
_js_escapes.update(('%c' % z, '\\u%04X' % z) for z in xrange(32))


def escapejs_filter(value):
    escaped = []
    for letter in value:
        if letter in _js_escapes:
            escaped.append(_js_escapes[letter])
        else:
            escaped.append(letter)

    return Markup("".join(escaped))

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tpl_engine = Environment(loader=FileSystemLoader([get_path('view')]),
                         trim_blocks=True,
                         lstrip_blocks=True)

tpl_engine.globals.update(
    url_for=url_for,
    static=static_global,
)

tpl_engine.filters['markdown'] = markdown_filter
tpl_engine.filters['md'] = markdown_filter
tpl_engine.filters['shuffle'] = shuffle_filter
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tpl_engine.filters['escapejs'] = escapejs_filter
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tpl_global_vars = {
    'request': request,
    'version': version,
    'config': config,
    'now': datetime.datetime.now(),
}


# HELPERS #####################################################################

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def abort(code, message):
    log.error(message)
    abort_flask(code, message)


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def render_view(view, context=None):
    """
    A simple helper to render [view] template with [context] vars.
    It automatically adds the global template vars defined above, too.
    It returns a string, usually the HTML contents to display.
    """
    context = {} if context is None else context
    return tpl_engine.get_template(view).render(
        dict(tpl_global_vars.items() + context.items())
    )


# def render_page(page, title="My Page", context=None):
#     """
#     A simple helper to render the md_page.html template with [context] vars &
#     the additional contents of `page/[page].md` in the `md_page` variable.
#     It automagically adds the global template vars defined above, too.
#     It returns a string, usually the HTML contents to display.
#     """
#     if context is None:
#         context = {}
#     context['title'] = title
#     context['md_page'] = ''
#     with file(get_path('page/%s.md' % page)) as f:
#         context['md_page'] = f.read()
#     return tpl_engine.get_template('md_page.html').render(
#         dict(tpl_global_vars.items() + context.items())
#     )

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def is_list_in_list(needle, haystack):
    for n in needle:
        if n not in haystack:
            return False
    return True


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def round_time(dt=None, round_to=60):
    """
    Round a datetime object to any time laps in seconds
    dt : datetime.datetime object, default now.
    roundTo : Closest number of seconds to round to, default 1 minute.
    """
    if dt is None:
        dt = datetime.datetime.now()
    seconds = (dt.replace(tzinfo=None) - dt.min).seconds
    rounding = (seconds + round_to / 2) // round_to * round_to
    return dt + datetime.timedelta(0, rounding-seconds, -dt.microsecond)


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def datetime_from_list(time_list):
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    """
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    Datetimes in retrieved CDFs are stored as lists of numbers,
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    with DayOfYear starting at 0. We want it starting at 1 because it's what
    vendor parsers use, both in python and javascript.
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    """
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    # Day Of Year starts at 0, but for our datetime parser it starts at 1
    doy = '{:03d}'.format(int(''.join(time_list[4:7])) + 1)
    return datetime.datetime.strptime(
        "%s%s%s" % (''.join(time_list[0:4]), doy, ''.join(time_list[7:])),
        "%Y%j%H%M%S%f"
    )
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def get_local_filename(url):
    """
    Build the local cache filename for the distant file
    :param url: string
    :return: string
    """
    from slugify import slugify
    n = len('http://')
    if url.startswith('https'):
        n += 1
    s = url[n:]
    return slugify(s)


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def get_target_config(slug):
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    for s in config['targets']:  # dumb
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        if s['slug'] == slug:
            return s
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    raise Exception("No target found in configuration for '%s'." % slug)
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def check_target_config(slug):
    get_target_config(slug)


def retrieve_amda_netcdf(orbiter, what, started_at, stopped_at):
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    """
    Handles remote querying Myriam's API, downloading, extracting and caching
    the netCDF files.
    :param orbiter: key of the source in the YAML config
    :param what: either 'model' or 'orbit', a key in the config of the source
    :param started_at:
    :param stopped_at:
    :return: a list of local file paths to netCDF (.nc) files
    """

    url = config['amda'].format(
        dataSet=what,
        startTime=started_at.isoformat(),
        stopTime=stopped_at.isoformat()
    )
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    log.info("Fetching remote gzip files list at '%s'." % url)
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    retries = 0
    success = False
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    errors = []
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    remote_gzip_files = []
    while not success and retries < 3:
        try:
            response = urllib.urlopen(url)
            remote_gzip_files = json.loads(response.read())
            if not remote_gzip_files:
                raise Exception("Failed to fetch data at '%s'." % url)
            if remote_gzip_files == 'NODATASET':
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                raise Exception("API says there's no dataset at '%s'." % url)
            if remote_gzip_files == 'ERROR':
                raise Exception("API returned an error at '%s'." % url)
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            if remote_gzip_files == ['OUTOFTIME']:  # it happens
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                return []
                # raise Exception("API says it's out of time at '%s'." % url)
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            success = True
        except Exception as e:
            log.warn("Failed (%d/3) '%s' : %s" % (retries+1, url, e.message))
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            remote_gzip_files = []
            errors.append(e)
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        finally:
            retries += 1
    if not remote_gzip_files:
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        abort(400, "Failed to fetch gzip files list for %s at '%s' : %s" %
                   (orbiter, url, errors))
    else:
        remote_gzip_files = list(set(remote_gzip_files))
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    log.debug("Fetched remote gzip files list : %s." % str(remote_gzip_files))
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    local_gzip_files = []
    for remote_gzip_file in remote_gzip_files:
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        # hotfixes to remove when fixed upstream @Myriam
        if remote_gzip_file in ['OUTOFTIME', 'ERROR']:
            continue  # sometimes half the response is okay, the other not
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        if remote_gzip_file.endswith('/.gz'):
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            continue  # this is just a plain bug
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        remote_gzip_file = remote_gzip_file.replace('cdpp1', 'cdpp', 1)
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        ################################################
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        local_gzip_file = join(CACHE_DIR, get_local_filename(remote_gzip_file))
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        local_gzip_files.append(local_gzip_file)
        if not isfile(local_gzip_file):
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            log.debug("Retrieving '%s'..." % local_gzip_file)
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            urllib.urlretrieve(remote_gzip_file, local_gzip_file)
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            log.debug("Retrieved '%s'." % local_gzip_file)
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        else:
            log.debug("Found '%s' in the cache." % local_gzip_file)
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    local_netc_files = []
    for local_gzip_file in local_gzip_files:
        local_netc_file = local_gzip_file[0:-3]
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        log.debug("Unzipping '%s'..." % local_gzip_file)
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        success = True
        try:
            with gzip.open(local_gzip_file, 'rb') as f:
                file_content = f.read()
                with open(local_netc_file, 'w+b') as g:
                    g.write(file_content)
        except Exception as e:
            success = False
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            log.error("Cannot process gz file '%s' from '%s' : %s" %
                      (local_gzip_file, url, e))
            # Sometimes, the downloaded gz is corrupted, and CRC checks fail.
            # We want to delete the local gz file and try again next time.
            removefile(local_gzip_file)
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        if success:
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            local_netc_files.append(local_netc_file)
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            log.debug("Unzipped '%s'." % local_gzip_file)
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    return list(set(local_netc_files))  # remove possible dupes
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def get_data_for_target(target_config, started_at, stopped_at):
    """
    :return: dict whose keys are datetime as str, values tuples of data
    """
    log.debug("Grabbing data for '%s'..." % target_config['slug'])
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    try:
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        models = target_config['models']
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    except Exception as e:
        abort(500, "Invalid model configuration for '%s' : %s"
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              % (target_config['slug'], str(e)))
    try:
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        orbits = target_config['orbit']['models']
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    except Exception as e:
        abort(500, "Invalid orbit configuration for '%s' : %s"
              % (target_config['slug'], str(e)))
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    def _sta_sto(_cnf, _sta, _sto):
        if 'started_at' in _cnf:
            _s0 = datetime.datetime.strptime(_cnf['started_at'], FILE_DATE_FMT)
            _s0 = max(_s0, _sta)
        else:
            _s0 = _sta
        if 'stopped_at' in _cnf:
            _s1 = datetime.datetime.strptime(_cnf['stopped_at'], FILE_DATE_FMT)
            _s1 = min(_s1, _sto)
        else:
            _s1 = _sto
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        return _s0, _s1
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    precision = "%Y-%m-%dT%H"  # model and orbits times are only equal-ish
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    orbit_data = {}  # keys are datetime as str, values arrays of XY
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    for orbit in orbits:
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        s0, s1 = _sta_sto(orbit, started_at, stopped_at)
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        orbit_files = retrieve_amda_netcdf(
            target_config['slug'], orbit['slug'], s0, s1
        )
        for orbit_file in orbit_files:
            log.debug("%s: opening orbit NETCDF4 '%s'..." %
                      (target_config['name'], orbit_file))
            cdf_handle = Dataset(orbit_file, "r", format="NETCDF4")
            times = cdf_handle.variables['Time']  # YYYY DOY HH MM SS .ms
            try:
                data_hee = cdf_handle.variables['HEE']
            except KeyError:
                data_hee = cdf_handle.variables['XYZ_HEE']  # p67 uses this

            log.debug("%s: aggregating data from '%s'..." %
                      (target_config['name'], orbit_file))
            for time, datum_hee in zip(times, data_hee):
1324cc91   Goutte   Make the footer i...
466
467
468
469
470
                try:
                    dtime = datetime_from_list(time)
                except Exception as e:
                    log.error("Failed to parse time from %s." % time)
                    raise e
ea6c8d5d   Goutte   Add interval cons...
471
                if s0 <= dtime <= s1:
1324cc91   Goutte   Make the footer i...
472
                    dkey = round_time(dtime, 60*60).strftime(precision)
ea6c8d5d   Goutte   Add interval cons...
473
474
                    orbit_data[dkey] = datum_hee
            cdf_handle.close()
180d7d97   Goutte   Refactor heavily.
475

8644387c   Goutte   Use real data.
476
    all_data = {}  # keys are datetime as str, values tuples of data
58bfe281   Goutte   Handle start and ...
477
478
479
480
481
482
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485
486
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494
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500
501
502
503
504
505
506
507
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509
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511
512
513
514
515
516
517
518
    for model in models:
        s0, s1 = _sta_sto(model, started_at, stopped_at)
        model_files = retrieve_amda_netcdf(
            target_config['slug'], model['slug'], s0, s1
        )
        for model_file in model_files:
            # Time, StartTime, StopTime, V, B, N, T, Delta_angle, P_dyn
            log.debug("%s: opening model NETCDF4 '%s'..." %
                      (target_config['name'], model_file))
            cdf_handle = Dataset(model_file, "r", format="NETCDF4")
            times = cdf_handle.variables['Time']  # YYYY DOY HH MM SS .ms
            data_v = cdf_handle.variables['V']
            data_b = cdf_handle.variables['B']
            data_t = cdf_handle.variables['T']
            data_n = cdf_handle.variables['N']
            data_p = cdf_handle.variables['P_dyn']
            data_d = cdf_handle.variables['Delta_angle']
            log.debug("%s: aggregating data from '%s'..." %
                      (target_config['name'], model_file))
            for time, datum_v, datum_b, datum_t, datum_n, datum_p, datum_d \
                    in zip(times, data_v, data_b, data_t, data_n, data_p, data_d):
                vrad = datum_v[0]
                vtan = datum_v[1]
                try:
                    dtime = datetime_from_list(time)
                except Exception as e:
                    log.error("Failed to parse time from %s." % time)
                    raise e
                if s0 <= dtime <= s1:
                    dkey = round_time(dtime, 60*60).strftime(precision)
                    x_hee = None
                    y_hee = None
                    if dkey in orbit_data:
                        x_hee = orbit_data[dkey][0]
                        y_hee = orbit_data[dkey][1]
                    all_data[dkey] = (
                        dtime.strftime("%Y-%m-%dT%H:%M:%S+00:00"),
                        vrad, vtan, sqrt(vrad * vrad + vtan * vtan),
                        datum_b, datum_t, datum_n, datum_p, datum_d,
                        x_hee, y_hee
                    )
            cdf_handle.close()
8644387c   Goutte   Use real data.
519

180d7d97   Goutte   Refactor heavily.
520
521
522
523
524
525
526
527
528
529
530
531
532
    return all_data


def generate_csv_contents(target_slug, started_at, stopped_at):
    target_config = get_target_config(target_slug)
    log.debug("Crunching CSV contents for '%s'..." % target_config['name'])
    si = StringIO.StringIO()
    cw = csv_writer(si)
    cw.writerow(PROPERTIES)

    all_data = get_data_for_target(target_config, started_at, stopped_at)

    log.debug("Writing and sorting CSV for '%s'..." % target_config['slug'])
8644387c   Goutte   Use real data.
533
534
    for dkey in sorted(all_data):
        cw.writerow(all_data[dkey])
2d2af24b   Goutte   Add a basic orbit...
535

180d7d97   Goutte   Refactor heavily.
536
    log.info("Generated CSV contents for '%s'." % target_config['slug'])
2d2af24b   Goutte   Add a basic orbit...
537
538
    return si.getvalue()

8644387c   Goutte   Use real data.
539

180d7d97   Goutte   Refactor heavily.
540
541
def generate_csv_file_if_needed(target_slug, started_at, stopped_at):
    filename = "%s_%s_%s.csv" % (target_slug,
c0df94bc   Goutte   Adding more logs.
542
543
                                 started_at.strftime(FILE_DATE_FMT),
                                 stopped_at.strftime(FILE_DATE_FMT))
e18701b6   Goutte   Cache clear (remo...
544
    local_csv_file = join(CACHE_DIR, filename)
80352490   Goutte   Multi model suppo...
545
546
547
548
549
550
551
552
553
554
555
556
557

    generate = True
    if isfile(local_csv_file):
        # It need to have more than one line to not be empty (headers)
        with open(local_csv_file) as f:
            cnt = 0
            for _ in f:
                cnt += 1
                if cnt > 1:
                    generate = False
                    break

    if generate:
c0df94bc   Goutte   Adding more logs.
558
559
560
        log.info("Generating CSV '%s'..." % local_csv_file)
        try:
            with open(local_csv_file, mode="w+") as f:
180d7d97   Goutte   Refactor heavily.
561
                f.write(generate_csv_contents(target_slug,
c0df94bc   Goutte   Adding more logs.
562
563
564
565
                                              started_at=started_at,
                                              stopped_at=stopped_at))
            log.info("Generation of '%s' done." % filename)
        except Exception as e:
dc0be992   Goutte   Support having no...
566
            log.error(e)
5ede388f   Goutte   Make sure failed ...
567
            if isfile(local_csv_file):
92abc15b   Goutte   Mistrust the API ...
568
                log.warn("Removing failed CSV '%s'..." % local_csv_file)
5ede388f   Goutte   Make sure failed ...
569
                removefile(local_csv_file)
9bfa6c42   Goutte   More bug hunting.
570
            abort(500, "Failed creating CSV '%s' : %s" % (filename, e))
c0df94bc   Goutte   Adding more logs.
571
572


e18701b6   Goutte   Cache clear (remo...
573
574
575
576
577
578
579
580
581
582
583
584
585
586
587
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589
590
591
592
593
594
595
def remove_all_files(in_directory):
    """
    Will throw if something horrible happens.
    Does not remove recursively (could be done with os.walk if needed).
    Does not remove directories either.
    :param in_directory: absolute path to directory
    :return:
    """
    import os

    if not os.path.isdir(in_directory):
        raise ValueError("No directory to clean at '%s'.")

    removed_files = []
    for file_name in os.listdir(in_directory):
        file_path = os.path.join(in_directory, file_name)
        if os.path.isfile(file_path):
            os.remove(file_path)
            removed_files.append(file_path)

    return removed_files


28bb4b28   Goutte   API for the cache...
596
597
def remove_files_created_before(date, in_directory):
    """
077980eb   Goutte   Improve availabil...
598
599
600
    Will throw if something horrible happens.
    Does not remove recursively (could be done with os.walk if needed).
    Does not remove directories either.
28bb4b28   Goutte   API for the cache...
601
    :param date: datetime object
077980eb   Goutte   Improve availabil...
602
    :param in_directory: absolute path to directory
28bb4b28   Goutte   API for the cache...
603
604
605
606
607
608
609
    :return:
    """
    import os
    import time

    secs = time.mktime(date.timetuple())

077980eb   Goutte   Improve availabil...
610
611
    if not os.path.isdir(in_directory):
        raise ValueError("No directory to clean at '%s'.")
28bb4b28   Goutte   API for the cache...
612
613
614
615

    removed_files = []
    for file_name in os.listdir(in_directory):
        file_path = os.path.join(in_directory, file_name)
077980eb   Goutte   Improve availabil...
616
617
618
619
620
        if os.path.isfile(file_path):
            t = os.stat(file_path)
            if t.st_ctime < secs:
                os.remove(file_path)
                removed_files.append(file_path)
28bb4b28   Goutte   API for the cache...
621
622
623
624

    return removed_files


077980eb   Goutte   Improve availabil...
625
626
627
628
629
630
631
632
633
634
635
def get_hit_counter():
    hit_count_path = get_path("../VISITS")

    if isfile(hit_count_path):
        hit_count = int(open(hit_count_path).read())
    else:
        hit_count = 1

    return hit_count


a4a9ef03   Goutte   Cache generated C...
636
637
638
639
640
641
642
643
644
645
646
647
648
649
650
651
def increment_hit_counter():
    hit_count_path = get_path("../VISITS")

    if isfile(hit_count_path):
        hit_count = int(open(hit_count_path).read())
        hit_count += 1
    else:
        hit_count = 1

    hit_counter_file = open(hit_count_path, 'w')
    hit_counter_file.write(str(hit_count))
    hit_counter_file.close()

    return hit_count


077980eb   Goutte   Improve availabil...
652
653
654
tpl_global_vars['visits'] = get_hit_counter()


a4a9ef03   Goutte   Cache generated C...
655
656
657
# ROUTING #####################################################################

@app.route('/favicon.ico')
bde97e4d   Goutte   Add more changes ...
658
def favicon():  # we want it served from the root, not from static/
a4a9ef03   Goutte   Cache generated C...
659
660
661
662
663
664
665
666
667
668
    return send_from_directory(
        join(app.root_path, 'static', 'img'),
        'favicon.ico', mimetype='image/vnd.microsoft.icon'
    )


@app.route("/")
@app.route("/home.html")
@app.route("/index.html")
def home():
077980eb   Goutte   Improve availabil...
669
    increment_hit_counter()
bde97e4d   Goutte   Add more changes ...
670
671
    parameters = PARAMETERS.values()
    parameters.sort(key=lambda x: x['position'])
a4a9ef03   Goutte   Cache generated C...
672
673
    return render_view('home.html.jinja2', {
        'targets': config['targets'],
bde97e4d   Goutte   Add more changes ...
674
        'parameters': parameters,
a4a9ef03   Goutte   Cache generated C...
675
676
677
        'planets': [s for s in config['targets'] if s['type'] == 'planet'],
        'probes':  [s for s in config['targets'] if s['type'] == 'probe'],
        'comets':  [s for s in config['targets'] if s['type'] == 'comet'],
077980eb   Goutte   Improve availabil...
678
        'visits':  get_hit_counter(),
a4a9ef03   Goutte   Cache generated C...
679
680
681
    })


180d7d97   Goutte   Refactor heavily.
682
683
@app.route("/<target>_<started_at>_<stopped_at>.csv")
def download_target_csv(target, started_at, stopped_at):
a4a9ef03   Goutte   Cache generated C...
684
685
686
687
688
    """
    Grab data and orbit data for the specified `target`,
    rearrange it and return it as a CSV file.
    `started_at` and `stopped_at` should be UTC.
    """
180d7d97   Goutte   Refactor heavily.
689
    check_target_config(target)
a4a9ef03   Goutte   Cache generated C...
690
    try:
c0df94bc   Goutte   Adding more logs.
691
        started_at = datetime.datetime.strptime(started_at, FILE_DATE_FMT)
a4a9ef03   Goutte   Cache generated C...
692
693
694
    except:
        abort(400, "Invalid started_at parameter : '%s'." % started_at)
    try:
c0df94bc   Goutte   Adding more logs.
695
        stopped_at = datetime.datetime.strptime(stopped_at, FILE_DATE_FMT)
a4a9ef03   Goutte   Cache generated C...
696
697
698
    except:
        abort(400, "Invalid stopped_at parameter : '%s'." % stopped_at)

180d7d97   Goutte   Refactor heavily.
699
    filename = "%s_%s_%s.csv" % (target,
c0df94bc   Goutte   Adding more logs.
700
701
                                 started_at.strftime(FILE_DATE_FMT),
                                 stopped_at.strftime(FILE_DATE_FMT))
e18701b6   Goutte   Cache clear (remo...
702
    local_csv_file = join(CACHE_DIR, filename)
180d7d97   Goutte   Refactor heavily.
703
    generate_csv_file_if_needed(target, started_at, stopped_at)
a4a9ef03   Goutte   Cache generated C...
704
705
706
    if not isfile(local_csv_file):
        abort(500, "Could not cache CSV file at '%s'." % local_csv_file)

e18701b6   Goutte   Cache clear (remo...
707
    return send_from_directory(CACHE_DIR, filename)
a4a9ef03   Goutte   Cache generated C...
708
709


0511eed7   Goutte   Tarball generatio...
710
711
@app.route("/<targets>_<started_at>_<stopped_at>.tar.gz")
def download_targets_tarball(targets, started_at, stopped_at):
b2837a08   Goutte   Add three retries...
712
    """
bc18b96c   Goutte   Implement first (...
713
714
715
    Grab data and orbit data for each of the specified `targets`,
    in their own CSV file, and make a tarball of them.
    `started_at` and `stopped_at` should be UTC strings.
b2837a08   Goutte   Add three retries...
716

ea6c8d5d   Goutte   Add interval cons...
717
718
    Note: we do not use this route anymore, but let's keep it shelved for now.

2fedd73b   Goutte   Initial implement...
719
    targets: string list of targets' slugs, separated by `-`.
b2837a08   Goutte   Add three retries...
720
    """
2fedd73b   Goutte   Initial implement...
721
    separator = '-'
0511eed7   Goutte   Tarball generatio...
722
723
    targets = targets.split(separator)
    targets.sort()
2fedd73b   Goutte   Initial implement...
724
725
    targets_configs = []
    for target in targets:
b2837a08   Goutte   Add three retries...
726
727
        if not target:
            abort(400, "Invalid targets format : `%s`." % targets)
180d7d97   Goutte   Refactor heavily.
728
        targets_configs.append(get_target_config(target))
2fedd73b   Goutte   Initial implement...
729
    if 0 == len(targets_configs):
b2837a08   Goutte   Add three retries...
730
731
        abort(400, "No valid targets specified. What are you doing?")

b2837a08   Goutte   Add three retries...
732
    try:
ea6c8d5d   Goutte   Add interval cons...
733
        started_at = datetime.datetime.strptime(started_at, FILE_DATE_FMT)
b2837a08   Goutte   Add three retries...
734
735
736
    except:
        abort(400, "Invalid started_at parameter : '%s'." % started_at)
    try:
ea6c8d5d   Goutte   Add interval cons...
737
        stopped_at = datetime.datetime.strptime(stopped_at, FILE_DATE_FMT)
b2837a08   Goutte   Add three retries...
738
739
    except:
        abort(400, "Invalid stopped_at parameter : '%s'." % stopped_at)
ea6c8d5d   Goutte   Add interval cons...
740
741
    sta = started_at.strftime(FILE_DATE_FMT)
    sto = stopped_at.strftime(FILE_DATE_FMT)
b2837a08   Goutte   Add three retries...
742

0511eed7   Goutte   Tarball generatio...
743
    gzip_filename = "%s_%s_%s.tar.gz" % (separator.join(targets), sta, sto)
e18701b6   Goutte   Cache clear (remo...
744
    local_gzip_file = join(CACHE_DIR, gzip_filename)
2fedd73b   Goutte   Initial implement...
745
746

    if not isfile(local_gzip_file):
0511eed7   Goutte   Tarball generatio...
747
        log.debug("Creating the CSV files for the tarball...")
2fedd73b   Goutte   Initial implement...
748
        for target_config in targets_configs:
0511eed7   Goutte   Tarball generatio...
749
            filename = "%s_%s_%s.csv" % (target_config['slug'], sta, sto)
e18701b6   Goutte   Cache clear (remo...
750
            local_csv_file = join(CACHE_DIR, filename)
2fedd73b   Goutte   Initial implement...
751
752
            if not isfile(local_csv_file):
                with open(local_csv_file, mode="w+") as f:
180d7d97   Goutte   Refactor heavily.
753
                    f.write(generate_csv_contents(target_config['slug'],
2fedd73b   Goutte   Initial implement...
754
755
756
                                                  started_at=started_at,
                                                  stopped_at=stopped_at))

0511eed7   Goutte   Tarball generatio...
757
        log.debug("Creating the tarball '%s'..." % local_gzip_file)
2fedd73b   Goutte   Initial implement...
758
759
        with tarfile.open(local_gzip_file, "w:gz") as tar:
            for target_config in targets_configs:
0511eed7   Goutte   Tarball generatio...
760
                filename = "%s_%s_%s.csv" % (target_config['slug'], sta, sto)
e18701b6   Goutte   Cache clear (remo...
761
                local_csv_file = join(CACHE_DIR, filename)
2fedd73b   Goutte   Initial implement...
762
763
764
                tar.add(local_csv_file, arcname=filename)

    if not isfile(local_gzip_file):
0511eed7   Goutte   Tarball generatio...
765
        abort(500, "No tarball to serve. Looked at '%s'." % local_gzip_file)
2fedd73b   Goutte   Initial implement...
766

e18701b6   Goutte   Cache clear (remo...
767
    return send_from_directory(CACHE_DIR, gzip_filename)
b2837a08   Goutte   Add three retries...
768

28bb4b28   Goutte   API for the cache...
769

bc18b96c   Goutte   Implement first (...
770
771
772
773
@app.route("/<targets>_<params>_<started_at>_<stopped_at>.nc")
def download_targets_netcdf(targets, params, started_at, stopped_at):
    """
    Grab data and orbit data for the specified `target`,
aa7247d6   Goutte   Generate a CDF fi...
774
    rearrange it and return it as a NetCDF file.
e18701b6   Goutte   Cache clear (remo...
775
    `started_at` and `stopped_at` are expected to be UTC.
bc18b96c   Goutte   Implement first (...
776
777
778
779

    targets: string list of targets' slugs, separated by `-`.
    params: string list of targets' parameters, separated by `-`.
    """
e18701b6   Goutte   Cache clear (remo...
780
    separator = '-'  # /!\ this char should never be in target's slugs
bc18b96c   Goutte   Implement first (...
781
782
783
784
785
786
787
788
789
790
791
792
793
794
795
796
    targets = targets.split(separator)
    targets.sort()
    targets_configs = []
    for target in targets:
        if not target:
            abort(400, "Invalid targets format : `%s`." % targets)
        targets_configs.append(get_target_config(target))
    if 0 == len(targets_configs):
        abort(400, "No valid targets specified. What are you doing?")
    params = params.split(separator)
    params.sort()
    if 0 == len(params):
        abort(400, "No valid parameters specified. What are you doing?")
    if not is_list_in_list(params, PARAMETERS.keys()):
        abort(400, "Some parameters are not recognized in '%s'." % str(params))

57493104   Goutte   Add the time to t...
797
    date_fmt = FILE_DATE_FMT
bc18b96c   Goutte   Implement first (...
798
799
800
801
802
803
804
805
806
807
808
809
810
    try:
        started_at = datetime.datetime.strptime(started_at, date_fmt)
    except:
        abort(400, "Invalid started_at parameter : '%s'." % started_at)
    try:
        stopped_at = datetime.datetime.strptime(stopped_at, date_fmt)
    except:
        abort(400, "Invalid stopped_at parameter : '%s'." % stopped_at)
    sta = started_at.strftime(date_fmt)
    sto = stopped_at.strftime(date_fmt)

    nc_filename = "%s_%s_%s_%s.nc" % \
                  (separator.join(targets), separator.join(params), sta, sto)
e18701b6   Goutte   Cache clear (remo...
811
    nc_path = join(CACHE_DIR, nc_filename)
bc18b96c   Goutte   Implement first (...
812
813
814
815
816

    if not isfile(nc_path):
        log.debug("Creating the NetCDF file '%s'..." % nc_filename)
        nc_handle = Dataset(nc_path, "w", format="NETCDF4")
        try:
ea6c8d5d   Goutte   Add interval cons...
817
            nc_handle.description = "Model and orbit data for targets"  # todo
bc18b96c   Goutte   Implement first (...
818
            nc_handle.history = "Created " + time.ctime(time.time())
ea6c8d5d   Goutte   Add interval cons...
819
            nc_handle.source = "Heliopropa (CDDP)"
bc18b96c   Goutte   Implement first (...
820
821
822
823
824
825
826
            available_params = list(PROPERTIES)
            for target in targets_configs:
                target_slug = target['slug']
                log.debug("Adding group '%s' to the NetCDF..." % target_slug)
                nc_group = nc_handle.createGroup(target_slug)
                data = get_data_for_target(target, started_at, stopped_at)
                dkeys = sorted(data)
ceeb2f4a   Goutte   Add the target co...
827
828
                dimension = 'dim_'+target_slug
                nc_handle.createDimension(dimension, len(dkeys))
57493104   Goutte   Add the time to t...
829
830

                # TIME #
ceeb2f4a   Goutte   Add the target co...
831
                nc_time = nc_group.createVariable('time', 'i8', (dimension,))
57493104   Goutte   Add the time to t...
832
833
834
835
836
837
838
839
840
841
842
843
                nc_time.units = "hours since 1970-01-01 00:00:00"
                nc_time.calendar = "standard"
                times = []
                for dkey in dkeys:
                    time_as_string = data[dkey][0][:-6]  # remove +00:00 tail
                    date = datetime.datetime.strptime(time_as_string, date_fmt)
                    times.append(date2num(
                        date, units=nc_time.units, calendar=nc_time.calendar
                    ))
                nc_time[:] = times

                # SELECTED PARAMETERS #
bc18b96c   Goutte   Implement first (...
844
845
846
847
                nc_vars = []
                indices = []
                for param in params:
                    indices.append(available_params.index(param))
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848
                    nc_var = nc_group.createVariable(param, 'f8', (dimension,))
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                    nc_var.units = PARAMETERS[param]['units']
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                    nc_vars.append(nc_var)
                for i, nc_var in enumerate(nc_vars):
                    index = indices[i]
                    values = []
                    for dkey in dkeys:
                        dval = data[dkey]
                        values.append(dval[index])
                    nc_var[:] = values
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                # ORBIT #
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                nc_x = nc_group.createVariable('xhee', 'f8', (dimension,))
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                nc_x.units = 'Au'
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                nc_y = nc_group.createVariable('yhee', 'f8', (dimension,))
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                nc_y.units = 'Au'
                values_x = []
                values_y = []
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                index_x = available_params.index('xhee')
                index_y = available_params.index('yhee')
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                for dkey in dkeys:
                    dval = data[dkey]
                    values_x.append(dval[index_x])
                    values_y.append(dval[index_y])
                nc_x[:] = values_x
                nc_y[:] = values_y
            log.debug("Writing NetCDF '%s'..." % nc_filename)

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        except Exception as e:
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            log.error("Failed to generate NetCDF '%s'." % nc_filename)
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            raise e
        finally:
            nc_handle.close()

    if not isfile(nc_path):
        abort(500, "No NetCDF to serve. Looked at '%s'." % nc_path)

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    return send_from_directory(CACHE_DIR, nc_filename)
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@app.route("/<targets>_<started_at>_<stopped_at>.cdf")
def download_targets_cdf(targets, started_at, stopped_at):
    """
    Grab data and orbit data for the specified `target`,
    rearrange it and return it as a CDF file.
    `started_at` and `stopped_at` are expected to be UTC.

    targets: string list of targets' slugs, separated by `-`.
    params: string list of targets' parameters, separated by `-`.
    """
    separator = '-'  # /!\ this char should never be in target's slugs
    targets = targets.split(separator)
    targets.sort()
    targets_configs = []
    for target in targets:
        if not target:
            abort(400, "Invalid targets format : `%s`." % targets)
        targets_configs.append(get_target_config(target))
    if 0 == len(targets_configs):
        abort(400, "No valid targets specified. What are you doing?")

    params = PARAMETERS.keys()
    # params = params.split(separator)
    # params.sort()
    # if 0 == len(params):
    #     abort(400, "No valid parameters specified. What are you doing?")
    # if not is_list_in_list(params, PARAMETERS.keys()):
    #     abort(400, "Some parameters are not recognized in '%s'." % str(params))

    try:
        started_at = datetime.datetime.strptime(started_at, FILE_DATE_FMT)
    except:
        abort(400, "Invalid started_at parameter : '%s'." % started_at)
    try:
        stopped_at = datetime.datetime.strptime(stopped_at, FILE_DATE_FMT)
    except:
        abort(400, "Invalid stopped_at parameter : '%s'." % stopped_at)
    sta = started_at.strftime(FILE_DATE_FMT)
    sto = stopped_at.strftime(FILE_DATE_FMT)

    cdf_filename = "%s_%s_%s.cdf" % (separator.join(targets), sta, sto)
    cdf_path = join(CACHE_DIR, cdf_filename)

    if not isfile(cdf_path):
        log.debug("Creating the CDF file '%s'..." % cdf_filename)
        try:
            cdf_handle = cdf.archive()
            description = "Model and orbit data for %s." % \
                ', '.join([t['name'] for t in targets_configs])
            cdf_handle.attributes['Description'] = description
            cdf_handle.attributes['Author'] = "Heliopropa.irap.omp.eu (CDPP)"
            cdf_handle.attributes['Created'] = str(time.ctime(time.time()))

            available_params = list(PROPERTIES)
            for target in targets_configs:
                target_slug = target['slug']
                data = get_data_for_target(target, started_at, stopped_at)
                dkeys = sorted(data)

                values = []
                units = "hours since 1970-01-01 00:00:00"
                calendar = "standard"
                for dkey in dkeys:
                    time_as_string = data[dkey][0][:-6]  # remove +00:00 tail
                    date = datetime.datetime.strptime(time_as_string, FILE_DATE_FMT)
                    values.append(date2num(date, units=units, calendar=calendar))
                k = "%s_time" % target_slug
                cdf_handle[k] = values
                cdf_handle[k].attributes['units'] = units

                for param in params:
                    k = "%s_%s" % (target_slug, param)
                    values = []
                    i = available_params.index(param)
                    for dkey in dkeys:
                        values.append(data[dkey][i])
                    cdf_handle[k] = values
                    cdf_handle[k].attributes['units'] = PARAMETERS[param]['units']

                k_xhee = "%s_xhee" % target_slug
                k_yhee = "%s_yhee" % target_slug
                values_xhee = []
                values_yhee = []
                index_x = available_params.index('xhee')
                index_y = available_params.index('yhee')
                for dkey in dkeys:
                    values_xhee.append(data[dkey][index_x])
                    values_yhee.append(data[dkey][index_y])
                cdf_handle[k_xhee] = values_xhee
                cdf_handle[k_yhee] = values_yhee
                cdf_handle[k_xhee].attributes['units'] = 'Au'
                cdf_handle[k_yhee].attributes['units'] = 'Au'

            log.debug("Writing CDF '%s'..." % cdf_filename)
            cdf_handle.save(cdf_path)

        except Exception as e:
            log.error("Failed to generate CDF '%s'." % cdf_filename)
            removefile(cdf_path)
            raise

        finally:
            # cdf_handle.close()
            pass

    if not isfile(cdf_path):
        abort(500, "No CDF to serve. Looked at '%s'." % cdf_path)

    return send_from_directory(CACHE_DIR, cdf_filename)


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# API #########################################################################

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@app.route("/cache/clear")
def cache_clear():
    """
    Removes all files from the cache.
    Note: It also removes the .gitkeep file. Not a problem for prod.
    """
    removed_files = remove_all_files(CACHE_DIR)
    count = len(removed_files)
    return "Cache cleared! Removed %d file%s." \
           % (count, 's' if count != 1 else '')


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@app.route("/cache/cleanup")
def cache_cleanup():
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    """
    Removes all files from the cache that are older than roughly one month.
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    Note: It also removes the .gitkeep file. Maybe it should not, but hey.
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    """
    a_month_ago = datetime.datetime.now() - datetime.timedelta(days=32)
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    removed_files = remove_files_created_before(a_month_ago, CACHE_DIR)
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    count = len(removed_files)
    return "Cache cleaned! Removed %d old file%s." \
           % (count, 's' if count != 1 else '')
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@app.route("/cache/warmup")
def cache_warmup():
    """
    Warms up the cache for the current day.
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    Linked to SpaceWeather#edit in swapp.ls to get the default time interval.
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    If you edit this code you'll need to edit the other as well and vice versa.
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    """
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    # relativedelta(years=3)
    # startted_at = datetime.datetime.now() - relativedelta(years=3)
    return "To Do"


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@app.route("/log")
def log_show():
    with open(LOG_FILE, 'r') as f:
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        contents = f.read()
    return contents


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@app.route("/log/clear")
def log_clear():
    with open(LOG_FILE, 'w') as f:
        f.truncate()
    return "Log cleared successfully."


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# DEV TOOLS ###################################################################

# @app.route("/inspect")
# def analyze_cdf():
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#     """
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#     For debug purposes.
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#     """
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#     cdf_to_inspect = get_path("../res/dummy.nc")
#     cdf_to_inspect = get_path("../res/dummy_jupiter_coordinates.nc")
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#
#     si = StringIO.StringIO()
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#     cw = csv.DictWriter(si, fieldnames=['Name', 'Shape', 'Length'])
#     cw.writeheader()
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#
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#     # Time, StartTime, StopTime, V, B, N, T, Delta_angle, P_dyn, QualityFlag
#     cdf_handle = Dataset(cdf_to_inspect, "r", format="NETCDF4")
#     for variable in cdf_handle.variables:
#         v = cdf_handle.variables[variable]
#         cw.writerow({
#             'Name': variable,
#             'Shape': v.shape,
#             'Length': v.size,
#         })
#     cdf_handle.close()
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#
#     return si.getvalue()


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# MAIN ########################################################################

if __name__ == "__main__":
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    a = "2015171150000001"



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    # Debug mode on, as the production server does not use this but run.wsgi
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    extra_files = [get_path('../config.yml')]
    app.run(debug=True, extra_files=extra_files)