FUNCTION dustem_compute_polsed,p_dim,$
                               st=st,$
                               P_spec=P_spec,$
                               SP_spec=SP_spec,$
                               dustem_polfrac=dustem_polfrac,$
                               dustem_sed=dustem_sed,$
                               help=help

;+
; NAME:
;    dustem_compute_polsed
;
; PURPOSE:
;    Computes a Polarized SED for a given Dustem spectrum
;
; CATEGORY:
;    DustEMWrap, Mid-Level, Distributed
;
; CALLING SEQUENCE:
;    sed=dustem_compute_polsed(p_dim[,st=][,P_spec=][,SP_spec=][,dustem_polfrac=][,dustem_sed=][,/help])
;
; INPUTS:
;    p_dim      = parameter values
;
; OPTIONAL INPUT PARAMETERS:
;    st        = Dustem structure
;    dustem_sed = Computed emission for spectrum points in !dustem_data
;
; OUTPUTS:
;    sed         = computed SED for filters in !dustem_data
;    dustem_polsed = Computed polarized emission for spectrum points in !dustem_data
;    P_spec        = Dustem polarized emission output 
;    SP_spec       = Dustem polarized emission fraction
;    dustem_polfrac = Computed polarization emission fraction for spectrum points in !dustem_data
;
; OPTIONAL OUTPUT PARAMETERS:
;    st        = Dustem structure
;    dustem_sed = Computed emission for spectrum points in !dustem_data
;
; ACCEPTED KEY-WORDS:
;    help      = If set, print this help
;
; COMMON BLOCKS:
;    None
;
; SIDE EFFECTS:
;    None
;
; RESTRICTIONS:
;    The DustEM fortran code must be installed
;    The DustEMWrap idl code must be installed
;
; PROCEDURE:
;    None
;
; EXAMPLES
;    
; MODIFICATION HISTORY:
;    Written by J.-Ph. Bernard
;    Evolution details on the DustEMWrap gitlab.
;    See http://dustemwrap.irap.omp.eu/ for FAQ and help.  
;-


IF keyword_set(help) THEN BEGIN
  doc_library,'dustem_compute_polsed'
  dustem_polsed=0.
  goto,the_end
ENDIF

IF not keyword_set(st) THEN BEGIN
  dustem_activate_plugins,p_dim/(*(*!dustem_fit).param_init_values),st=st
  ;st=dustem_run(p_dim)
ENDIF

If keyword_set(result) THEN result=sti
fact = 1.e4*(*!dustem_HCD)/(4.*!pi)/(3.e8/1.e-6/(st.polsed).wav)*1.e20/1.e7

P_spec = st.polsed.em_tot*fact ;This is Polarized intensity P
stI = st.sed.em_tot*fact    ;This is Total intensity I
out=0.
Nwaves=(size(P_spec))[1]

frac=P_spec/stI
tes=where(finite(frac) eq 0)
frac(tes)=0.

;This block was added to generate the polarization fraction spectrum with the plugins contributions. 
;smallp (polfrac) is naturally not an additive quantity.



;NB: if plugins that replace the total emission given by the fortran executable exist, 
;the need to add a block with a 'REPLPACE_SED' scope as for the 'REPLACE_POLSED' below, may arise.

;scopes=tag_names((*!dustem_plugin)) 
;IF scopes[0] NE 'NONE' THEN BEGIN
;IF ptr_valid(!dustem_plugin) THEN BEGIN
;  for i=0L,n_tags(*!dustem_plugin)-1 do begin

plugin_tags=(*!dustem_plugin).name
ind=where(plugin_tags NE 'NONE',Nplugins)
IF Nplugins NE 0 THEN BEGIN
;IF ptr_valid(!dustem_plugin) THEN BEGIN
   for i=0L,Nplugins-1 do begin
     if total(strsplit(((*!dustem_plugin)[i].scope),'+',/extract) eq 'ADD_SED') then stI+=(*(*!dustem_plugin)[i].spec)[*,0]
  endfor
ENDIF


IF Nplugins NE 0 THEN BEGIN
    FOR i=0L,Nplugins-1 DO BEGIN   
        IF total(strsplit(((*!dustem_plugin)[i].scope),'+',/extract) EQ 'REPLACE_POLSED') THEN BEGIN
            Q_spec=(*(*!dustem_plugin).(i).spec)[*,1]
            U_spec=(*(*!dustem_plugin).(i).spec)[*,2]
            ;make sure sti hasn't been replaced. But this is not happening in the near future
        ENDIF 
    ENDFOR    
ENDIF
    
    IF ~isa(Q_spec) && ~isa(U_spec) THEN BEGIN
        polar_ippsi2iqu,stI,Q_spec,U_spec,frac,replicate(!dustem_psi,Nwaves) ;the user needs to set this pointer somewhere
        SP_spec = frac 
    ENDIF

IF Nplugins NE 0 THEN BEGIN    
    FOR i=0L,Nplugins-1 DO BEGIN
        IF total(strsplit(((*!dustem_plugin)[i].scope),'+',/extract) EQ 'ADD_POLSED') THEN BEGIN
            Q_spec+=(*(*!dustem_plugin)[i].spec)[*,1]
            U_spec+=(*(*!dustem_plugin)[i].spec)[*,2]
        ENDIF
    ENDFOR
ENDIF

P_spec=sqrt(Q_spec^2+U_spec^2)
SP_spec=P_spec/Sti

dustem_polsed = (*(*!dustem_data).qsed).values * 0.
    
if not isarray(P_spec) THEN stop ;I don't understand this test. The only thing it can indicate is a problem with the dust parameters or the fortran executable. But in my opinion these tests would be  


IF !dustem_do_cc NE 0 AND !dustem_never_do_cc EQ 0 THEN BEGIN
  message,'DOING color correction calculations',/info
ENDIF ELSE BEGIN
  message,'SKIPPING color correction calculations',/info
ENDELSE

ind_polsed=where((*(*!dustem_data).qsed).filt_names NE 'SPECTRUM',count_polsed)  
  
IF count_polsed NE 0 THEN BEGIN
  filter_names=((*(*!dustem_data).qsed).filt_names)(ind_polsed)
  spolsed=dustem_cc(st.polsed.wav,P_spec,filter_names,cc=cc)
  dustem_polsed[ind_polsed]=spolsed
ENDIF


;For spectrum data points, interpolate in log-log.
;Linear interpolation leads to wrong values, in particular where few
;wavelengths points exist in the model (long wavelengths).
;I believe this to be automatic because the provided dustem spectra are already sampled on a log-log grid.

ind_spec=where((*(*!dustem_data).qsed).filt_names EQ 'SPECTRUM',count_spec) 
IF count_spec NE 0 THEN dustem_polsed(ind_spec)=interpol(P_spec,st.polsed.wav,(((*(*!dustem_data).qsed).wav)(ind_spec)))



;GENERATING THE INTERPOLATES FOR POLFRAC (dustem_polfrac)
if !run_lin then begin
    ;stop
    if not keyword_set(dustem_sed) then dustem_sed = dustem_compute_sed(p_dim,st=st,SED_spec=SED_spec)
          		
    If n_elements(dustem_sed) ne n_elements(dustem_polsed) then begin                            
        if n_elements(dustem_sed) gt n_elements(dustem_polsed) then begin 
      
            dustem_polsed_x = dustem_polsed
            dustem_sed_x = dustem_polsed ;meaning dustem_sed needs to be modified
      
            nwaves = n_elements(dustem_polsed)
      
      
              for i=0L,nwaves-1 do begin
      
                  j=where((*(*!dustem_data).sed).wav EQ (*(*!dustem_data).polfrac).wav(i),testwav)
                  if testwav ne 0 then dustem_sed_x(i) = dustem_sed(j(0))                                    
      
              endfor
      
        endif ELSE begin
        
            dustem_polsed_x = dustem_sed
            dustem_sed_x = dustem_sed ;meaning dustem_polsed needs to be modified
        
            nwaves = n_elements(dustem_sed)
        
            for i=0L,nwaves-1 do begin
                j=where((*(*!dustem_data).sed).wav EQ (*(*!dustem_data).polfrac).wav(i),testwav)
                if testwav ne 0 then dustem_polsed_x(i) = dustem_polsed(j(0))                                    
            endfor
          
        
        ENDELSE
    
    endif ELSE BEGIN
        
        dustem_polsed_x = dustem_polsed 
        dustem_sed_x = dustem_sed
    
    ENDELSE
    
    dustem_polfrac = dustem_polsed_x/dustem_sed_x 
	       
ENDIF


;clean pointers
heap_gc

the_end:

RETURN,dustem_polsed

END