cmsave.pro
24.8 KB
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;+
; NAME:
; CMSAVE
;
; AUTHOR:
; Craig B. Markwardt, NASA/GSFC Code 662, Greenbelt, MD 20770
; craigm@lheamail.gsfc.nasa.gov
;
; PURPOSE:
; Save IDL variables to a file. (IDL v5 and greater)
;
; CALLING SEQUENCE: (various)
; CMSAVE, var1, var2, ..., FILENAME=filename [, NAMES=names]
; CMSAVE, DATA=pointers, NAMES=names, FILENAME=filename
; CMSAVE, DATA=handles, NAMES=names, FILENAME=filename
; CMSAVE, DATA=structure, FILENAME=filename
;
; DESCRIPTION:
;
; CMSAVE is a replacement for the built-in IDL procedure SAVE, with
; more flexibility and increased capabilities.
;
; CMSAVE produces output files that are compatible with the standard
; save format of IDL versions 4 and 5 (and perhaps greater).
; Variables may be restored by using either the built-in procedure
; RESTORE, or CMRESTORE. The CMSV utility library must be installed
; in your IDL path to use CMSAVE and CMRESTORE.
;
; The primary advantages to CMSAVE are the ability to append
; additional variables to an existing SAVE file, and several
; flexible ways to pass the data and variable names to be saved.
; CMSAVE also attempts to run on all IDL versions.
;
; To append variables to an existing file, simply specify the APPEND
; keyword, and the filename of an existing writable SAVE file.
; Variables will be appended to the end of the file. It is possible
; to append a variable with the same name as an existing variable in
; a file. Both data values are stored in the file. However the
; results upon restore are undefined. There is also a limitation
; that only one series of heap values -- pointed-to data -- may be
; saved in a file.
;
; By the normal convention of the built-in SAVE command, both the
; data and variable names to be saved are passed as parameters on
; the command line. Each parameter must be a named variable; both
; the name and value are saved.
;
; This convention may be used in invoking CMSAVE as well. However,
; in addition to passing the data by positional parameter, the user
; can pass the data using the DATA keyword. If the DATA keyword is
; used, then an array of pointers or handles may be passed, or a
; structure of values may be passed. (see below) If both are
; passed, then the positional parameters take precedence.
;
; It is also possible to explicitly rename the saved variables: the
; saved name does not need to be the name of the named variable.
; Use the NAMES keyword to override the default name. By default
; the name is drawn from any named variables, or from the structure
; tag names if the DATA keyword is used with a structure. The NAMES
; keyword takes precedence over these values. NOTE: Values passed
; by pointer or handle are not named by default, and so will not be
; saved unless the NAMES keyword is used.
;
; ==================================================================
; Research Systems, Inc. has issued a separate license intended
; to resolve any potential conflict between this software and the
; IDL End User License Agreement. The text of that license
; can be found in the file LICENSE.RSI, included with this
; software library.
; ==================================================================
;
; COMPATIBILITY:
;
; -- File Format --
; Files written by CMSAVE should be readable with all known versions
; of IDL at the time of this writing (version 4 - version 5.4). It
; is expected that this compatibility will persist.
;
; CMSAVE cannot write objects, compressed files, or data sets larger
; than 2 gigabytes.
;
; Data types available in newer versions of IDL, such as pointers
; and long integers, will not be readable in older versions of IDL
; which do not have those data types.
;
; -- Calling Interface --
;
; For the most part, all capabilities of CMSAVE are available to the
; user. However, it should be noted that passing variables by
; positional parameter is not available under IDL 4, unless NAMES is
; used to name the variables explicitly.
;
; This procedure is part of the CMSVLIB SAVE library for IDL by
; Craig Markwardt. You must have the full CMSVLIB core package
; installed in order for this procedure to function properly.
;
; INPUTS:
;
; VAR{i} - The variables to be saved. By default the save name is
; taken from the named variables that are passed. These
; default names can be overridden by using the NAMES
; keyword.
;
; Variables can also be specified by passing an array of
; handles or pointers in the DATA keyword.
;
; If no variables are passed as positional parameters or
; using DATA, then CMSAVE will assume that *all* variables
; at the caller's level should be saved (this is similar
; behavior to the built-in SAVE routine). Note that system
; variables cannot be saved with CMSAVE.
;
; KEYWORDS:
;
; ALL - for compatibility with the built-in SAVE routine. Ignored.
; Note that CMSAVE cannot save system variables.
;
; FILENAME - the name of the output file.
; Default: 'cmsave.sav'
;
; DATA - A list of data elements to be saved to the output file.
; The data elements can be one of the following. The means
; of extracting the data, and the method of naming each
; variable, are also indicated.
;
; * An array of pointers to the variables
; Data: pointed-to value Name: from NAMES keyword
; * An array of handles to the variables
; Data: pointed-to value Name: from NAMES keyword
; * A 1-element structure containing data to be saved.
; Data: tag value Name: tag name
;
; Data values are saved one by one, using the appropriate
; name. Note that any variables passed as positional
; parameters will cause the DATA keyword to be ignored.
;
; The calling routine is responsible for deallocating any
; pointer or handle resources.
;
; COMPATIBILITY - a string, which describes the format to be used in
; the output file. Possible values are:
;
; 'IDL4' - format of IDL version 4;
; 'IDL5' - format of IDL versions 5.0-5.3;
; 'IDL6' - not supported yet, for versions 5.4-above;
; 'RIVAL1' - same as 'IDL5', plus a directory entry is
; written to the file.
; Note that files written in IDL5 format may still be
; readable by IDL v.4.
; Default: 'IDL5'
;
; NAMES - a string array, giving the names for each variable.
;
; If the data are passed by positional parameters, the names
; are assigned according to the position of the parameter in
; the procedure call. This can be especially useful to
; rename local variables, and to give names to expressions.
;
; If the data are passed by an array of pointers or handles,
; then the names are assigned according to the position of
; the data in the array. In this case there is no other way
; to supply the variable name. NAMES is required.
;
; If the data are passed in a structure, then the names are
; assigned according to the position of the data in the
; structure. The NAMES keyword values override the tag
; names.
;
; APPEND - if set, then the specified variables are appended to an
; existing file.
;
; Repeated variables will not cause an error, however they
; may not be restored properly using the built-in RESTORE
; procedure. It may also not be permitted to append
; variables that contain heap pointers, to a save file
; which already contains heap data.
;
; STATUS - upon return, an integer indicating the status of the
; operation. A value of 1 indicates success, while 0
; indicates failure. A failure condition does not
; necessarily indicate that an individual variable could
; not be written; use the VARSTATUS keyword to detect such
; situations.
;
; VARSTATUS - upon return, an integer array indicating the status of
; the save operation for each variable. A value of 1 at
; position i in the array indicates success for the ith
; variable, while a value of 0 indicates failure.
;
; ERRMSG - upon return, a string indicating the status of the
; operation. The empty string indicates success, while a
; non-empty string indicates failure and describes the
; error condition.
;
; QUIET - if set, then the error message is returned to the calling
; routine. By default an error condition causes execution
; to stop and the message to be printed on the console.
;
; VERBOSE - if set, then a short message is printed for each
; variable.
;
; XDR - for compatibility with the built-in SAVE routine. Ignored.
;
; EXAMPLE:
;
; CMSAVE, VAR1, VAR2, FILENAME='test.sav'
; CMSAVE, VAR1, VAR2, FILENAME='test.sav', NAMES=['A','B']
;
; Save the data in VAR1 and VAR2 to the file test.sav. In the
; first case the saved variable names will be VAR1 and VAR2. In
; the second case the saved variable names will be A and B.
;
; POINTERS = [ptr_new(VAR1), ptr_new(VAR2)]
; CMSAVE, DATA=POINTERS, NAMES=['A','B'], FILENAME='test.sav'
;
; Save the data in VAR1 and VAR2 to the file test.sav. The saved
; variable names will be A and B. Data are passed by pointer.
;
; STRUCTURE = {A: VAR1, B: VAR2}
; CMSAVE, DATA=STRUCTURE, FILENAME='test.sav'
;
; Save the data in VAR1 and VAR2 to the file test.sav. The saved
; variable names will be A and B. Data are passed by structure.
;
; SEE ALSO:
;
; CMRESTORE, SAVE, RESTORE, CMSVLIB
;
; MODIFICATION HISTORY:
; Written, 14 May 2000
; Documented, 22 Sep 2000
; Made "more" compatible with SAVE; additional documentation, 11 Jan
; 2001, CM
; Make version checks with correct precision, 19 Jul 2001, CM
; Added notification about RSI License, 13 May 2002, CM
;
; $Id: cmsave.pro,v 1.16 2009/11/22 23:26:19 craigm Exp $
;
;-
; Copyright (C) 2000-2001, Craig Markwardt
; This software is provided as is without any warranty whatsoever.
; Permission to use, copy, modify, and distribute modified or
; unmodified copies is granted, provided this copyright and disclaimer
; are included unchanged.
;-
function cmsave_handle_value, handle, no_copy=nocop ;; Utility function
handle_value, handle, value, no_copy=keyword_set(nocop)
return, value
end
;; Undocumented
;; MTIMES
;; PASS_METHOD
;; NOCATCH
pro cmsave, p0, p1, p2, p3, p4, p5, p6, p7, p8, p9, $
p10, p11, p12, p13, p14, p15, p16, p17, p18, p19, $
p20, p21, p22, p23, p24, p25, p26, p27, p28, p29, $
filename=filename0, verbose=verbose, xdr=xdr, $
compatible=compat0, append=append, all=all, $
status=status, varstatus=colstatus, mtimes=mtimes, $
names=names, data=data, pass_method=method, $
errmsg=errmsg, quiet=quiet, nocatch=nocatch, useunit=useunit, $
version=revision
forward_function routine_names, ptr_valid, handle_info
status = 0
errmsg = ''
colstatus = 0 & dummy = temporary(colstatus) ;; Void out the status
cmsvlib_version = '<unknown>'
catch, catcherr
if catcherr EQ 0 then lib = cmsvlib(/query, version=cmsvlib_version) else lib = 0
catch, /cancel
if lib EQ 0 then $
message, 'ERROR: The CMSVLIB library must be in your IDL path.'
revision = '$Revision: 1.16 $'
;; Extract the version number
revision = stregex(revision,'\$'+'Revision: *([0-9.]+) *'+'\$',/extract,/sub)
revision = revision(1)
if keyword_set(verbose) then begin
message, /info, 'CMSAVE version '+revision, traceback=0
message, /info, 'CMSV Library version '+cmsvlib_version(0), traceback=0
endif
if NOT keyword_set(nocatch) then on_error, 2
n_par = n_params()
ver = double(!version.release)
kall = 0 ;; NOTE: Ignoring ALL keywod!!
if n_elements(filename0) EQ 0 then filename0 = 'cmsave.sav'
filename = strtrim(filename0(0),2)
if n_elements(compat0) EQ 0 then compat0 = 'IDL5'
compat = strupcase(strtrim(compat0(0),2))
lev = routine_names(/level)
szd = size(data)
ndata = n_elements(data)
nnames = n_elements(names)
;; By default, if no arguments are specified (and no data) then, then
;; all of the data in the caller is saved.
if n_par EQ 0 AND ndata EQ 0 then kall = 1
if n_par EQ 0 AND kall EQ 0 AND nnames EQ 0 AND ndata EQ 0 then begin
NO_VARS:
status = 1
errmsg = 'WARNING: no variables were specified; '+filename+' not created'
if NOT keyword_set(quiet) then message, errmsg, /info
return
endif
if kall then begin
;; Extract variables from calling procedure
vlev = lev - 1
vnames = routine_names(variables=vlev)
fnames = 'routine_names("'+vnames+'",fetch=vlev)'
nvar = n_elements(vnames)
atype = 'FETCH'
endif else if n_par EQ 0 AND nnames GT 0 then begin
;; Extract named variables from the calling procedure
vlev = lev - 1
vnames = strtrim(names,2)
fnames = 'routine_names("'+vnames+'",fetch=vlev)'
nvar = nnames
atype = 'FETCH'
endif else if n_par GT 0 then begin
;; Extract variables from positional parameters
vlev = lev
lev1 = strtrim(lev-1,2)
nvar = n_par
fnames = 'p'+strtrim(indgen(nvar),2)
vnames = strarr(nvar)
if ver GE 5D then $
for i = 0L, nvar-1 do $
dummy = execute('vnames(i) = (routine_names('+fnames(i)+ $
',arg_name='+lev1+'))(0)')
atype = 'FETCH'
endif else begin
;; Extract variables from DATA
vlev = lev
tp = szd(szd(0)+1)
if tp EQ 10 then begin ;; POINTER TYPE
nvar = ndata
fnames = strarr(nvar) & vnames = fnames
wh = where(ptr_valid(data) EQ 1, ct)
if ct GT 0 then fnames(wh) = '*(data['+strtrim(wh,2)+'])'
atype = 'POINTER'
endif else if tp EQ 3 then begin ;; HANDLE TYPE
nvar = ndata
fnames = strarr(nvar) & vnames = fnames
wh = where(handle_info(data) EQ 1, ct)
if ct GT 0 then $
fnames(wh) = 'cmsave_handle_value(data('+strtrim(wh,2)+'))'
atype = 'HANDLE'
endif else if tp EQ 8 then begin
nvar = n_tags(data(0))
stsize = tagsize(data(0), n_tags=nvar, tag_names=vnames)
fnames = 'data(0).'+vnames
atype = 'STRUCT'
endif else begin
errmsg = 'ERROR: keyword DATA must be a pointer array or structure'
status = 0
return
endelse
endelse
if nvar LE 0 then goto, NO_VARS
colstatus = lonarr(nvar)
;; User-renamed variables
if n_elements(names) GT 0 then begin
sz = size(names)
if sz(sz(0)+1) NE 7 then begin
errmsg = 'ERROR: NAMES must be a string array'
status = 0
return
endif
vnames(0) = strtrim(strupcase(names(*)),2)
endif
;; Check for variables with missing names. By default don't do
;; anything, unless all the variables do not have names, or if we
;; are using IDL 4, which cannot accept parameters from the command
;; line.
wh = where(vnames EQ '', ct)
if ct EQ nvar then begin
errmsg = ('ERROR: no variables have names (are you using IDL 4 or' + $
' forget the NAMES keyword?)')
status = 0
return
endif
if ver LT 5D AND ct GT 0 then begin
if keyword_set(verbose) then $
message, ('WARNING: in IDL 4 you cannot pass variables by argument '+ $
'to CMSAVE.'), /info, traceback=0
endif
;; Collect a summary of pointers
if ver GE 5D then begin
cmsv_ptrsum, null, /null
pheap = null
pind = 0L
catcherr = 0
catch, catcherr
if catcherr NE 0 then goto, DONE_PTR
for i = 0L, nvar-1 do begin
pheap1 = null
if fnames(i) EQ '' OR $
execute('cmsv_ptrsum, '+fnames(i)+', pheap1') EQ 0 then $
goto, DONE_PTR
if n_elements(pheap1) GT 1 then begin
pheap = [pheap, pheap1]
pheap = pheap(uniq(pheap, sort(pheap)))
endif
DONE_PTR:
endfor
catch, /cancel
endif else pheap = 0L
nheap = n_elements(pheap) - 1
if nheap GT 0 AND compat EQ 'IDL4' then begin
errmsg = 'ERROR: cannot store pointer data in IDL4 version file'
status = 0
return
endif
;; Open output file
if keyword_set(append) then access='RW' else access='W'
cmsv_open, unit, filename, off0, access=access, /get_lun, status=status, $
errmsg=errmsg, compat=compat
if status EQ 0 then begin
if keyword_set(quiet) EQ 0 then message, errmsg, traceback=0
return
endif
pp = 0L
has_heap = 0
nauxvars = 0L
if keyword_set(append) then begin
;; Scan through input file until we reach the end-of-file block
bn = ''
while status EQ 1 AND bn NE 'END_MARKER' do begin
point_lun, unit, off0
block = 0 & dummy = temporary(block)
cmsv_rrec, block, pp, unit=unit, next_block=pnext, /init, $
block_type=bt, block_name=bn, status=status, errmsg=errmsg, $
promote64=promote64
if status EQ 0 then goto, CLEANUP
if bn EQ 'HEAP_INDEX' then has_heap = 1
if bn EQ 'VARIABLE' AND status EQ 1 then begin
cmsv_rvtype, block, pp, vn, sz1, unit=unit, status=st1, $
template=tp1, errmsg=err1
if strmid(vn,0,12) EQ '_CMSAVE_DIR_' then $
nauxvars = nauxvars + 1
endif
if status EQ 1 AND bn NE 'END_MARKER' then off0 = pnext
endwhile
if bn NE 'END_MARKER' then goto, CLEANUP
point_lun, unit, off0
endif else begin
;; Create the file and append the start record blocks
if keyword_set(verbose) then $
message, 'Portable (XDR) SAVE/RESTORE file.', /info
;; both timestamp and version information
cmsv_wrec, block, pp, block_name='TIMESTAMP', offset=off0, $
status=status, errmsg=errmsg
if (status NE 0) AND (compat NE 'IDL4') then $
cmsv_wrec, block, pp, block_name='VERSION', offset=off0, $
status=status, errmsg=errmsg, compat=compat
if (status EQ 0) OR (pp EQ 0) then goto, CLEANUP
writeu, unit, block(0:pp-1)
off0 = off0 + pp
endelse
if nheap GT 0 AND keyword_set(append) AND has_heap AND $
strmid(compat,0,3) EQ 'IDL' then begin
errmsg = 'ERROR: cannot APPEND data containing POINTER type'
goto, CLEANUP
endif
pp = 0L
block = 0 & dummy = temporary(block)
if nheap GT 0 then begin
pind = lindgen(nheap) + 1
pheap = pheap(1:nheap)
cmsv_wrec, block, pp, pind, block_name='HEAP_INDEX', offset=off0, $
status=status, errmsg=errmsg, unit=unit1
if status NE 1 then goto, CLEANUP
endif
if pp GT 0 then writeu, unit, block(0:pp-1)
off0 = off0 + pp
if keyword_set(useunit) then $
unit1 = unit
pp = 0L
block = 0 & dummy = temporary(block)
init = 1 & err1 = '' & saved = 0
erri = strarr(nvar+nheap)
catcherr = 0 & caught = 0
if NOT keyword_set(nocatch) then catch, catcherr
if catcherr NE 0 then begin
caught = caught + 1
goto, DONE_VAR
endif
for i = 0L, nheap+nvar-1 do begin
saved = 0
nelem = 0
j = i - nheap
if j LT 0 then begin
;; Extract heap value
bn = 'HEAP_DATA'
vname = long(pind(i))
dummy = execute('sz = size(*pheap(i))')
if sz(sz(0)+1) EQ 0 then goto, DONE_VAR
dummy = execute('var = *pheap(i)')
endif else begin
;; Extract variable value
bn = 'VARIABLE'
fname = fnames(j)
vname = vnames(j)
sz = 0 & var = 0 & dummy = temporary(var)
if fname EQ '' then begin
NO_NAME:
err1 = 'WARNING: un-named expression(s) not written'
goto, DONE_VAR
endif
if execute('sz = size('+fname+')') EQ 0 then goto, DONE_VAR
if sz(sz(0)+1) EQ 0 OR sz(sz(0)+2) EQ 0 then goto, DONE_VAR
if execute('var = '+fname) EQ 0 then goto, DONE_VAR
;; For data taken from the structure then we may need to
;; pull out a more accurate array type.
if atype EQ 'STRUCT' then sz = stsize(*,j)
sz = sz(0:sz(0)+2)
nelem = n_elements(var)
if nelem EQ 0 then goto, DONE_VAR
if vname EQ '' then goto, DONE_VAR
endelse
;; Stupid dimensions can be reformed just by assignment. This
;; will catch and reform the variable.
if (sz(0) GT 0) AND (n_elements(size(var)) NE n_elements(sz)) then $
var = reform([var], sz(1:sz(0)), /overwrite)
sz = size(var)
;; Write data to a block in memory
off1 = pp
cmsv_wrec, block, pp, var, vname, block_name=bn, offset=off0, $
ptr_index=pind, ptr_data=pheap, init=init, unit=unit1, $
status=status, errmsg=errmsg
init = 0
if status EQ 0 then goto, CLEANUP
saved = 1
DONE_VAR:
;; A tricky business, this error catching...
if caught GT 1 then begin
errmsg = 'ERROR: an internal error occurred'
goto, CLEANUP
endif
if caught GT 0 then begin
err1 = errmsg
endif
;; If we have accumulated enough data, write to file
if (pp GT 32768L) OR ((i EQ nheap+nvar-1) AND pp GT 0) then begin
writeu, unit, block(0:pp-1)
block = 0 & dummy = temporary(block)
init = 1
off0 = off0 + pp
pp = 0L
endif
if keyword_set(useunit) AND pp EQ 0 then $
point_lun, -unit, off0
;; Print some diagnostic messages
if j GE 0 then begin
colstatus(j) = saved
if keyword_set(verbose) AND saved then $
erri(i) = 'Saved variable: '+vname+'.'
if saved EQ 0 then begin
if err1 NE '' then $
erri(i) = err1 $
else if nelem EQ 0 then $
erri(i) = 'Undefined item not saved: '+vnames(j)+'.' $
else begin
erri(i) = ('Expression must be named variable: <'+$
helpform('', var, /short)+'>')
if ver LT 5D then $
erri(i) = erri(i) + ' - use NAMES keyword under IDL4'
endelse
endif
endif else begin
if keyword_set(verbose) AND saved then $
erri(i) = ('Saved heap value: <'+ $
helpform('', var, /short)+'>')
endelse
caught = 0
endfor
catch, /cancel
wh = where(erri NE '', ct)
if ct GT 0 then begin
if NOT keyword_set(quiet) then for i = 0L, ct-1 do $
message, erri(wh(i)), /info
fmt = '('+strtrim(ct,2)+'(A,:))'
if ct GT 1 then erri(wh(1:*)) = erri(wh(1:*)) + ';'
errmsg = string(erri(wh), format=fmt)
endif
if pp GT 0 then writeu, unit, (temporary(block))(0:pp-1)
off0 = off0 + pp
pp = 0L & off1 = 0L
;; Write a set of auxiliary directory information
whgood = where(colstatus NE 0, ngoodvars)
if ngoodvars GT 0 AND strmid(compat,0,5) EQ 'RIVAL' then begin
;; Construct a unique name for the auxiliary directory
nauxvars = nauxvars + 1
fname = filename
i = (rstrpos(fname,'/') > rstrpos(fname,'\') > rstrpos(fname,':') > $
rstrpos(fname,';') > 0L)
fname = byte(strmid(fname, i, strlen(fname)))
i = strpos(fname, '.')
if i GT 0 then fname = strupcase(strmid(fname, 0, i))
bb = byte(fname)
wh = where(bb LT (byte('A'))(0) OR bb GT (byte('Z'))(0), ct)
if ct GT 0 then bb(wh) = 32b
fname = strcompress(string(bb), /remove_all)
if strlen(fname) EQ 0 then fname = 'FILE'
;; Whew, we got a name! Now create the data for the directory
auxvname = string(fname,nauxvars, $
format='("_CMSAVE_DIR_",A0,"_",I2.2)')
auxvdata = replicate({variable:'', mtime:systime(1)}, ngoodvars)
auxvdata.variable = vnames(whgood)
if n_elements(mtimes) GT 0 then $
auxvdata.mtime(0) = double(mtimes(whgood(0:n_elements(mtimes)-1)))
auxsz = size(auxvdata)
;; Write out directory data
cmsv_wrec, block, pp, auxvdata, auxvname, block_name='VARIABLE', $
offset=off0, status=status, errmsg=errmsg, unit=unit1
endif
;; Write end marker
cmsv_wrec, block, pp, block_name='END_MARKER', status=status, offset=off0
if status EQ 1 AND pp GT 0 then writeu, unit, block(0:pp-1)
free_lun, unit
return
;;
;; Error handling routine, outside the normal call flow
CLEANUP:
catch, /cancel
free_lun, unit
status = 0
if errmsg NE '' AND NOT keyword_set(quiet) then message, errmsg, /info
return
end