dustem_create_ionfrac.pro
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function dustem_create_ionfrac, key=key, val=val
;PURPOSE :
;--------
; pour une Température et une densité donnée
; pour une liste de taille donnée (en nb de carbone ou angströms)
; donne les fractions de PAH neutre/cation/anion pour chaque taille
;
;INPUTS :
;-------
; gastemp = gas temperature
; sizes = PAHs size in Angstroms
; xe = electronic density relative to the hydrogen
; n_h = hydrogen density in cm-3
; n_elec = electronic density in cm-3
; file_isrf = ISRF file
; !run_ionfrac tells where to write the ionization fraction
; 1 : in MIX_xxx.DAT
; 2 : in SIZE_xxx.DAT
;Default values for the parameters
gastemp = 100.d0
n_elec = 3.d-4
;Check if these values have to be modified
IF keyword_set(key) THEN BEGIN
a=where(key EQ 1,count1)
b=where(key EQ 2,count2)
IF count1 NE 0 then gastemp=(val(a))(0)
IF count2 NE 0 then n_elec=(val(b))(0)
ENDIF
;=== GET SIZES ===
;Check version of the model ...
; IF getenv('DUSTEM_WHICH') NE 'VERSTRAETE' THEN BEGIN
IF !dustem_which NE 'VERSTRAETE' THEN BEGIN
message, "YOU SHOULD BE USING THE NEW VERSION OF THE MODEL AND THE INPUT FILES"
; ... and identify PAH0 and PAH1
ENDIF ELSE BEGIN
pah0 = (where(strmid((*!dustem_params).grains.type,0,4) eq 'PAH0'))(0)
pah1 = (where(strmid((*!dustem_params).grains.type,0,4) eq 'PAH1'))(0)
ENDELSE
;Get info on PAH0 and PAH1 sizes
test_size = stregex( (*!dustem_params).keywords,'SIZE',/bool,/fold)
; ... either from the SIZE_xxx.DAT files
IF test_size THEN BEGIN
pah0_nsize = (*(*!dustem_params).size(pah0)).nsize
pah1_nsize = (*(*!dustem_params).size(pah1)).nsize
pah0_sizes = (*(*!dustem_params).size(pah0)).size_st.a
pah1_sizes = (*(*!dustem_params).size(pah1)).size_st.a
if pah0_sizes ne pah1_sizes then message, "PAH0 and PAH1 should have the same size distribution. Please correct."
sizes = pah0_sizes
ENDIF ELSE BEGIN
; ... or from the GRAIN.DAT
pah0_nsize = (((*!dustem_params).grains.ndiscr)(pah0))(0)
pah1_nsize = (((*!dustem_params).grains.ndiscr)(pah1))(0)
alpha0 = (((*!dustem_params).grains.alpha)(pah0))(0)
tmin0 = (((*!dustem_params).grains.tmin)(pah0))(0)
tmax0 = (((*!dustem_params).grains.tmax)(pah0))(0)
alpha1 = (((*!dustem_params).grains.alpha)(pah1))(0)
tmin1 = (((*!dustem_params).grains.tmin)(pah1))(0)
tmax1 = (((*!dustem_params).grains.tmax)(pah1))(0)
if alpha0 ne alpha1 or tmin0 ne tmin1 or tmax0 ne tmax1 then message, "PAH0 and PAH1 should have the same size distribution. Please correct."
sizes = fltarr(pah0_nsize)
for i=0L,pah0_nsize-1 do begin
sizes(i) = tmin0 * exp(i * alog(tmax0/tmin0) / (pah0_nsize-1)) * 1.d8
endfor
ENDELSE
;Compute other parameters
Nc = (sizes/0.9)^2. ;number of carbon atoms
dim_n = pah0_nsize
;OUTPUT :
;--------
; fn = fraction of neutral PAH
; fc = fraction of cation PAH
; fa = fraction of anion PAH
;-----
; ISRF
;-----
lam_isrf = (*!dustem_params).isrf.lambisrf
isrf = (*!dustem_params).isrf.isrf
;convert into microns-1 and sort
x = 1./lam_isrf
isrf=isrf[sort(x)]
x=x[sort(x)]
dim_l = (size(x))(1)
;--------------------------------------
; absorption cross sections in UV (refer to L.Verstraete's HDR)
;--------------------------------------
sig_uv_pah = fltarr(dim_l) ;in Mbarn/C
;below 5.9
on = where(x lt 5.9)
sig_uv_pah(on) = 6.6*(4.5/x(on)*(3.5*x(on))^2/((x(on)^2-4.5^2)^2+(3.5*x(on))^2))
;between 5.9 and 10.84
on = where(x ge 5.9 and x lt 10.84)
sig_uv_pah(on) = 6.6*(4.5/x(on)*(3.5*x(on))^2/((x(on)^2-4.5^2)^2+(3.5*x(on))^2)) + 0.85*(0.5392*(x(on)-5.9)^2+0.0564*(x(on)-5.9)^2)
;between 10.84 and 21.36
on = where(x ge 10.84 and x lt 21.36)
sig_uv_pah(on) = 18.6*(13.4*x(on))^2/((x(on)^2-12.8^2)^2+(13.4*x(on))^2)
;above 21.36
on = where(x ge 21.36)
sig_uv_pah(on) = 9.2*(21.36/x(on))^1.7
C = fltarr(dim_n,dim_l)
Ec = 8.2/sqrt(Nc)*1./sqrt(1.-sqrt(6./Nc)+2./Nc) ;in eV
xc = Ec*1.6/(6.626d-1*3.) ;cutoff frequency in microns-1
for j=0, dim_l-1 do begin
for i=0, dim_n-1 do begin
C(i,j) = 1./!pi*atan(1.d5*(x(j)/xc(i)-1.)^3) + .5 ;cutoff function
endfor
endfor
sig_uv_pah_tab = fltarr(dim_n,dim_l)
for j=0, dim_l-1 do begin
for i=0, dim_n-1 do begin
sig_uv_pah_tab(i,j) = sig_uv_pah(j) * C(i,j) * Nc(i) * 1.e6 ;in barn (good comparison with L.Verstraete's HDR)
endfor
endfor
;---------------------
;ionization parameters
;---------------------
Icoronene = 7.3 ; eV
Icoronene = Icoronene*1.6/(6.626d-1*3.) ; microns-1
Ipah_ev = fltarr(dim_n)
Ipah_ev = 4.8+10.9/sizes ; eV
Ipah = Ipah_ev*1.6/(6.626d-1*3.) ; microns-1
Yion = fltarr(dim_n,dim_l)
for j=0, dim_l-1 do begin
for i=0, dim_n-1 do begin
Yion(i,j) = 0.8*exp(-0.00128*((12.-Icoronene)/(12.-Ipah(i))*(x(j)-12.))^4.) ; energies in microns-1
endfor
endfor
E_isrf = (6.626d-7*3.)*x*1.d6/1.6 ; lam_isrf in eV, sort in ascending order
n_ph = isrf*1./6.626d-27/E_isrf ; photon density in s-1.cm-2.eV-1 sort in ascending order of E_isrf
sig_ion = fltarr(dim_n,dim_l)
for j=0, dim_l-1 do begin
for i=0, dim_n-1 do begin
sig_ion(i,j) = Yion(i,j) * sig_uv_pah_tab(i,j) * 1.d-24 ; cm2
endfor
endfor
f = fltarr(dim_n,dim_l)
for j=0, dim_l-1 do begin
for i=0, dim_n-1 do begin
f(i,j) = (double(sig_ion(i,j)*n_ph(j)))
endfor
endfor
;-----------------------------------
;definition of reaction efficiencies
;-----------------------------------
;recombination in cm3/s
krec = 1.e-6*sqrt(300./gastemp) ; cm3/s
krec_s = krec*n_elec ; s-1
;electronic attachement
ke = fltarr(dim_n)
ke = 1.e-7*(Nc)^(3./4.) ; cm3/s
ke_s = ke*n_elec ; s-1
;ionization
kion = fltarr(dim_n)
for i=0, dim_n-1 do begin
on = where(E_isrf ge Ipah_ev(i) and E_isrf lt 13.6, count)
kion(i) = int_tabulated(E_isrf(on), (f(i,*))(on)) ;BORNES !!!!
endfor
;electronic photodetachement
kp = fltarr(dim_n)
Eae = 3 ;energie d'affinite electronique en eV
on_eae = where(E_isrf ge 3 and E_isrf le 13.6)
E_isrf2 = E_isrf(on_eae) ;energie isrf de 3 a 13.6 eV
n_ph2 = (n_ph)(on_eae) ;densite de photon entre 3 et 13.6 eV
Nph = int_tabulated(E_isrf2, n_ph2) ;nombre de photon d'energie comprise entre 3 et 13.6 eV
;kp = sig_uv_pah*Yion*Nc*Nph ;taux de photodetachement electronique
sigion = 1.6d-18
kp = sigion * Nc * Nph
k_str = {krec:0., ke:fltarr(dim_n), kion:fltarr(dim_n), kp:fltarr(dim_n)}
k_str.krec = krec_s & k_str.ke = ke_s & k_str.kion = kion & k_str.kp = kp
;--------------------------------------------
;fractions of PAH neutral, cations and anions
;--------------------------------------------
fn = (kp*krec*n_elec)/(kp*krec*n_elec+kp*kion+krec*ke*n_elec*n_elec)
fc = (kp*kion)/(kp*krec*n_elec+kp*kion+krec*ke*n_elec*n_elec)
fa = (krec*ke*n_elec*n_elec)/(kp*krec*n_elec+kp*kion+krec*ke*n_elec*n_elec)
f0 = fn
f1 = fa + fc
; WRITE RESULTS INTO PROPER "FILES"
; in MIX_xxx.DAT
if abs(!run_ionfrac) eq 1. then begin
(*(*!dustem_params).mix(pah0)).fmix = f0
(*(*!dustem_params).mix(pah1)).fmix = f1
; dustem_write_mix, getenv('DUSTEM_DAT'), (*!dustem_params).mix
dustem_write_mix, !dustem_dat, (*!dustem_params).mix
endif
; in SIZE_xxx.DAT
if abs(!run_ionfrac) eq 2. then begin
(*(*!dustem_params).size(pah0)).size_st.f_mix = f0
(*(*!dustem_params).size(pah1)).size_st.f_mix = f1
; dustem_write_size_lv, getenv('DUSTEM_DAT'), (*!dustem_params).size
dustem_write_size_lv, !dustem_dat, (*!dustem_params).size
endif
return,0
end