dustem_fit_sed_readme.pro 22 KB
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283 284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301 302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319 320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337 338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355 356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371 372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389 390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406 407 408 409 410 411 412 413 414 415 416 417 418 419 420 421 422 423 424 425 426 427 428 429 430 431 432 433 434 435 436 437 438 439 440 441 442 443 444 445 446 447 448 449 450 451 452 453 454 455 456 457 458 459 460 461 462 463 464 465 466 467 468 469 470 471 472 473 474 475 476 477 478 479 480 481 482 483 484 485 486 487 488 489 490 491 492 493 494 495 496 497 498 499 500 501 502 503 504 505 506 507 508 509 510 511 512 513 514 515 516 517 518 519 520 521 522 523 524 525 526 527 528 529 530 531 532 533 534 535 536 537 538 539 540 541 542 543 544 545
PRO dustem_fit_sed_readme,model=model $
                          ,sed=sed $
                          ,itermax=itermax $
                          ,postscript=postscript $
                          ,png=png $
                          ,save=save $
                          ,restore=restore $
                          ,help=help

;This routine is an example of how to fit observational SEDs with
;DustEM and DustEMWrap. The objective is to illustrate how to use DustEMWrap
; (and not to do science -- the fit obtained by running this example is
; likely to be poor!)
;  
;For this example, the code uses the SED in the file example_SED_1.xcat,
;which is distributed in the Data/EXAMPLE_OBSDATA/ directory 
;
;The example SED has Stokes I photometric data points from SPITZER
;IRAC and MIPS and IRAS. Examples illustrating running DustEMWrap to
;fit data with spectral data, polarisation data and extinction data
;are provided in other _readme routines in the src/idl/ directory.

;;  ***COMMENT AH***
;; Remove or update the next few lines -->>
;; No spectrum data points.
;;SPECTRUM data points can be included and the corresponding filter
;;filed must read SPECTRUM. Note that its is note necessary
;;to use the .xcat file format, and data SED can be provided
;;manually, but the observation structure must have the structure shown below.
;;For the example to work, the DustEM and DustEMWrap packages must have
;;been configured and installed succesfully.
;;See dustem_cvs_readme.txt for install instructions).
;; *** END COMMENT AH***
  
;+
; NAME:
;    dustem_fit_sed_readme  
; PURPOSE:
;    This is an example of how to fit SEDs with DustEMWrap.
;    It is intended as an example to follow when writing your own
;    programs to analyse data with DustEMWrap.
; CATEGORY:
;    DustEMWrap, Distributed, High-Level, User Example
; CALLING SEQUENCE:
;    dustem_fit_sed_readme,model=model,sed=sed,save=save,postscript=postscript,png=png,itermax=itermax,help=help
; INPUTS:
;    None
; OPTIONAL INPUT PARAMETERS:
;    None
; OUTPUTS:
;    None
; OPTIONAL OUTPUT PARAMETERS:
;    Plots, Results save structure
; ACCEPTED KEY-WORDS:
;    model = specifies the interstellar dust mixture used by DustEM
;           'MC10' model from Compiegne et al 2010 (default)
;           'DBP90' model from Desert et al 1990
;           'DL01' model from Draine & Li 2001
;           'WD01_RV5p5B' model from Weingartner & Draine 2002 with Rv=5.5
;           'DL07' model from Draine & Li 2007
;           'J13' model from Jones et al 2013, as updated in
;                 Koehler et al 2014
;           'G17_ModelA' model A from Guillet et al (2018). Includes
;                 polarisation. See Tables 2 and 3 of that paper for details.
;           'G17_ModelB' model B from Guillet et al (2018)
;           'G17_ModelC' model C from Guillet et al (2018)
;           'G17_ModelD' model A from Guillet et al (2018)
;    sed = string naming the path to text file in .xcat format that
;          describes the observational SED. If not set, the file
;          'Data/SEDs/sample_SED.xcat' is used.  
;    postscript = if set, final plot is saved as postscript in the
;                current working directory
;    png = if set, final plot is saved as png  in the
;          current working directory
;    save = if set, SED fits results saved as IDL .sav file in the
;           current working directory
;    itermax = maximum number of fit iterations. Default is 5.
;    help      = if set, print this help
; COMMON BLOCKS:
;    None
; SIDE EFFECTS:
;    None
; RESTRICTIONS:
;    The DustEM fortran code must be installed
;    The DustEMWrap IDL code must be installed
; PROCEDURES AND SUBROUTINES USED:
;    *** COMMENT AH --> is this really NONE? ****
; EXAMPLES
;    dustem_fit_sed_readme,model='DBP90',sed='../obs/input_sed.xcat',png='example.png',save='SED_fitresults.sav'
; MODIFICATION HISTORY:
;    Written by JPB Apr-2011
;    Evolution details on the DustEMWrap gitlab.
;    See http://dustemwrap.irap.omp.eu/ for FAQ and help.  
;-

IF keyword_set(help) THEN BEGIN
  doc_library,'dustem_fit_sed_readme'
  goto,the_end
END

IF keyword_set(model) THEN BEGIN
  use_model=strupcase(model)
ENDIF ELSE BEGIN
  use_model='MC10'    ;Default is last dustem model
ENDELSE

use_polarization=0.   ;default is no polarization in models
use_window=2       ; default graphics window number to use for plotting the results

;=== Set the (model-dependent) parameters that you want to fit
;=== Refer to the DustEM and DustEMWrap userguides for an explanation
;    of the different grain types

CASE use_model OF
      'DBP90':BEGIN
         pd = [ $
             '(*!dustem_params).G0', $      ;G0
             '(*!dustem_params).grains(0).mdust_o_mh',$  ;PAH0 mass fraction
             '(*!dustem_params).grains(1).mdust_o_mh',$     ;PAH1 mass fraction
             '(*!dustem_params).grains(2).mdust_o_mh', $    ;amCBEx
             'dustem_plugin_continuum_2']                ;Intensity of NIR continuum
        iv =   [1.0, 4.3e-4, 4.7e-4,6.4e-3,0.001]
        Npar=n_elements(pd)
        ulimed=replicate(0,Npar)
        llimed=replicate(1,Npar)
        llims=replicate(0.,Npar)
     END
      'DL01':BEGIN
         pd = [ $
             '(*!dustem_params).G0', $      ;G0
             '(*!dustem_params).grains(0).mdust_o_mh',$  ;PAH0 mass fraction
             '(*!dustem_params).grains(1).mdust_o_mh',$     ;PAH1 mass fraction
             '(*!dustem_params).grains(2).mdust_o_mh', $    ;Gra
             '(*!dustem_params).grains(3).mdust_o_mh', $    ;Gra
             '(*!dustem_params).grains(4).mdust_o_mh', $    ;aSil
             'dustem_plugin_continuum_2']                ;Intensity of NIR continuum
        iv =   [1.0,5.4e-4, 5.4e-4,1.8e-4,2.33e-3,8.27e-3,0.001]
        Npar=n_elements(pd)
        ulimed=replicate(0,Npar)
        llimed=replicate(1,Npar)
        llims=replicate(0.,Npar)
      END
      'WD01_RV5p5B':BEGIN
;;  ***COMMENT AH***
;; we need to implement this, or remove         
         message, 'WD01 model not yet implemented in DustEMWrap',/info
;;  ***END COMMENT AH***
       END
      'DL07':BEGIN
          pd = [ $
              '(*!dustem_params).G0', $      ;G0
              '(*!dustem_params).grains(0).mdust_o_mh',$  ;PAH0 mass fraction
              '(*!dustem_params).grains(1).mdust_o_mh',$     ;PAH1 mass fraction
              '(*!dustem_params).grains(2).mdust_o_mh', $    ;Gra
              '(*!dustem_params).grains(3).mdust_o_mh', $    ;Gra
              '(*!dustem_params).grains(4).mdust_o_mh', $    ;aSil
              'dustem_plugin_continuum_2']                ;Intensity of NIR continuum
              ;]  
;;  ***COMMENT AH***
;;  Clean up the following -->
;         pd = [ $
;             '(*!dustem_params).gas.G0', $      ;G0
;             '(*!dustem_params).grains(0).mdust_o_mh',$  ;PAH0 mass fraction
;             '(*!dustem_params).grains(1).mdust_o_mh',$     ;PAH1 mass fraction
;             '(*!dustem_params).grains(2).mdust_o_mh', $    ;Gra
;             '(*!dustem_params).grains(3).mdust_o_mh', $    ;Gra
;             '(*!dustem_params).grains(4).mdust_o_mh', $    ;aSil
;             'dustem_create_continuum_2', $
;             'dustem_create_stellar_population_O63',$ ; distance to the O3 stellar population
;             'dustem_create_stellar_population_O65',$ ; number of stars of the O3 stellar population
;             'dustem_create_stellar_population_B43',$ ; distance to the B4 stellar population
;             'dustem_create_stellar_population_B45'$ ; number of stars of the B4 stellar population
;             ]
;;  ***END COMMENT AH***
        
        iv =   [1.0,5.4e-4, 5.4e-4,1.8e-4,2.33e-3,8.27e-3,0.001];,10,1.,10.,1.]
        Npar=n_elements(pd)
        ulimed=replicate(0,Npar)
        llimed=replicate(1,Npar)
        llims=replicate(0.,Npar)
      END
      'MC10':BEGIN
        
;;  ***COMMENT AH***
;;  Clean up the following -->
        ;ORIGINAL LINES
        pd = [ $
              '(*!dustem_params).gas.G0', $      ;G0
              'dustem_plugin_continuum_2', $      ;intensity of NIR continuum
             ; 'dustem_plugin_synchrotron_2',$
              '(*!dustem_params).grains(0).mdust_o_mh',$     ;PAH0 mass fraction
              '(*!dustem_params).grains(1).mdust_o_mh',$     ;PAH1 mass fraction
              '(*!dustem_params).grains(2).mdust_o_mh', $    ;amCBEx
              '(*!dustem_params).grains(3).mdust_o_mh', $    ;amCBEx
              '(*!dustem_params).grains(4).mdust_o_mh' $     ;aSilx
              ]
        ;initial parameter values for parameters to be fitted   
        iv =   [ $  
          1.0, $
          0.002,   $ ;intensity of NIR continuum
  ;        0.01,$    
          7.8e-4,  $ ;mass fraction of  PAH0  
          7.8e-4,  $ ;mass fraction of  PAH1  
          1.65e-4, $ ;mass fraction of  amCBEx
          1.45e-3, $ ;mass fraction of  amCBEx
          7.8e-3   $   ;mass fraction of aSilx
          ]
          
;NEW LINES

;========COMMENTS=======
;amplitudes haven't been used so they're by default set to 1.
;using only the below stellar populations produces amplitudes that exceed 1. I do not understand the physical meaning of this.
         
;         pd = [ $
;               '(*!dustem_params).gas.G0', $      ;G0
;               'dustem_create_continuum_2', $      ;intensity of NIR continuum
;               'dustem_create_stellar_population_O63',$ ; distance to the O3 stellar population
;               ;'dustem_create_stellar_population_O64',$ ; amplitude of the O3 stellar population
;               'dustem_create_stellar_population_O65',$ ; number of stars of the O3 stellar population
;               'dustem_create_stellar_population_B43',$ ; distance to the B4 stellar population
;               ;'dustem_create_stellar_population_B44',$ ; amplitude of the B4 stellar population
;               'dustem_create_stellar_population_B45',$ ; number of stars of the B4 stellar population
;               '(*!dustem_params).grains(0).mdust_o_mh',$     ;PAH0 mass fraction
;               '(*!dustem_params).grains(1).mdust_o_mh',$     ;PAH1 mass fraction
;               '(*!dustem_params).grains(2).mdust_o_mh', $    ;amCBEx
;               '(*!dustem_params).grains(3).mdust_o_mh', $    ;amCBEx
;               '(*!dustem_params).grains(4).mdust_o_mh' $
;               ]  
              
        ; pd = [ $
        ;       ;'(*!dustem_params).G0', $      ;G0
        ;       '(*!dustem_params).grains(0).mdust_o_mh',$     ;PAH0 mass fraction
        ;       '(*!dustem_params).grains(1).mdust_o_mh',$     ;PAH1 mass fraction
        ;       '(*!dustem_params).grains(2).mdust_o_mh', $    ;amCBEx
        ;       '(*!dustem_params).grains(3).mdust_o_mh', $    ;amCBEx
        ;       '(*!dustem_params).grains(4).mdust_o_mh', $
        ;       ;'dustem_create_continuum_2', $      ;intensity of NIR continuum
        ;       'dustem_create_stellar_population_O63',$ ; distance to the O6 stellar population
              
        ;       ;'dustem_create_stellar_population_O64',$ ; amplitude of the O6 stellar population
              
        ;       ;'dustem_create_stellar_population_O65',$ ; number of stars of the O6 stellar population
        ;       'dustem_create_stellar_population_B43'$ ; distance to the B4 stellar population
              
        ;       ;;'dustem_create_stellar_population_B44',$ ; amplitude of the B4 stellar population
              
        ;       ;'dustem_create_stellar_population_B45'$ ; number of stars of the B4 stellar population
        ;       ]        
 
          
        ;initial parameter values for parameters to be fitted   
        ; iv =   [ $  
        ;   1.,     $ ;G0
        ;   7.8e-4,  $ ;mass fraction of  PAH0  
        ;   7.8e-4,  $ ;mass fraction of  PAH1  
        ;   1.65e-4, $ ;mass fraction of  amCBEx
        ;   1.45e-3, $ ;mass fraction of  amCBEx
        ;   7.8e-3,   $   ;mass fraction of big grains?
        ;   0.002,   $ ;intensity of NIR continuum    
        ;   10.,$
        ;   ;;1.,$
        ;   1.,$
        ;   10.,$
        ;   ;;1.,$
        ;   1.$  
        ;   ]          
;           
        
        ; iv =   [ $  
        ;   7.8e-4,  $ ;mass fraction of  PAH0  
        ;   7.8e-4,  $ ;mass fraction of  PAH1  
        ;   1.65e-4, $ ;mass fraction of  amCBEx
        ;   1.45e-3, $ ;mass fraction of  amCBEx
        ;   7.8e-3,   $   ;mass fraction of big grains?
        ;   ;0.002,   $ ;intensity of NIR continuum    
        ;   10.,$
        ;   ;;1.,$
        ;   ;1.,$
        ;   10.$
        ;   ;;1.,$
        ;   ;1.$  
        ;   ]          
        
        
            
     
        Npar=n_elements(pd)
        
        ;ulimed=[0   ,0   ,0   ,0   ,0   ,0   , 0   ,0   ,0   ,0   ,0   ,0   ,0] 
        ;ulimed=[0   ,0   ,0   ,0   ,0   ,0   , 0   ,0   ,0   ,0] 

        
        ;llimed=[1   , 1   ,1   ,1   ,1   ,1   ,1   ,1   ,1   ,1   ,1   ,1   ,1]
        ;llimed=[1   , 1   ,1   ,1   ,1   ,1   ,1   ,1   ,1   ,1]
        
        ;llims =[0.  ,0.   ,0.  ,0.   , 0.   ,0.   ,0.   ,0.   ,0.   ,0.   ,0.    ,0.   ,0.   ,0.]
        ;llims =[1.  ,0.   ,10.  ,0.   , 0.   ,0.   ,0.   ,0.   ,0.    ,0.   ,0.]
        
        ;lower limiting the stellar distances to 1pc avoid singularities
        ;[1e-9  ,
        ;llims =[1e-5  ,0.   ,0.    ,0.   ,0.   ,0.   ,0.   ,1.  ,0.     , 1.   ,0.   ]  
        
        ;llims =[0.   ,0.    ,0.   ,0.   ,0.   ,0.   ,1.  ,0.     , 1.   ,0.   ]
        ;llims =[0.    ,0.   ,0.   ,0.   ,0.   ,1.  , 1.   ]
        
        ulimed=replicate(0,Npar)
        llimed=replicate(1,Npar)
        llims=replicate(0.,Npar)
        
        
        ;=== Fixed parameters
        ;parameter description of parameters to be set to a non-default value
        ;fpd=[ $
          ;'!dustem_isrf_star_add[0].amplitude', $        ;amplitiude of first stellar contribution to ISRF
          ;'!dustem_isrf_star_add[0].distance', $        ;amplitiude of first stellar contribution to ISRF
          ;'(*!dustem_params).gas.G0' $     ;multiplicative factor to total ISRF
          ;'dustem_create_continuum_2' $     ;intensity of NIR continuum
          ;  ]
        ;initial parameter values for fixed parameters
        ;fiv=[ $
          ;1.0, $      ;amplitiude of first stellar contribution to ISRF
          ;1.0, $      ;distance of first stellar contribution to ISRF
        ;  1. $        ;multiplicative factor to total ISRF
          ;1.e-6 $      ;intensity of NIR continuum
         ;   ]
;;  ***END COMMENT AH***
      END
     'J13':BEGIN
        pd = [ $
             '(*!dustem_params).G0', $      ;G0
             '(*!dustem_params).grains(1).mdust_o_mh',$     ;PAH1 mass fraction
             '(*!dustem_params).grains(0).mdust_o_mh',$  ;PAH0 mass fraction
             '(*!dustem_params).grains(2).mdust_o_mh', $    ;amCBEx
             '(*!dustem_params).grains(3).mdust_o_mh', $    ;amCBEx
             '(*!dustem_params).grains(4).mdust_o_mh', $      ;aSil
             'dustem_plugin_continuum_2']                ;Intensity of NIR continuum
        iv =   [1.0, 7.8e-4, 7.8e-4,1.65e-4,1.45e-3,7.8e-3,0.001]
        Npar=n_elements(pd)
        ulimed=replicate(0,Npar)
        llimed=replicate(1,Npar)
        llims=replicate(0.,Npar)
      END
      'G17_MODELA':BEGIN

         pd = [ $
             '(*!dustem_params).G0', $      ;G0
             '(*!dustem_params).grains(0).mdust_o_mh',$  ;PAH0 mass fraction
             '(*!dustem_params).grains(1).mdust_o_mh',$     ;PAH1 mass fraction
             '(*!dustem_params).grains(2).mdust_o_mh', $    ;Gra
             '(*!dustem_params).grains(3).mdust_o_mh', $    ;Gra
             '(*!dustem_params).grains(4).mdust_o_mh', $    ;aSil
             'dustem_plugin_continuum_2']                ;Intensity of NIR continuum
        iv =   [1.0,5.4e-4, 5.4e-4,1.8e-4,2.33e-3,8.27e-3,0.001]
        Npar=n_elements(pd)
        ulimed=replicate(0,Npar)
        llimed=replicate(1,Npar)
        llims=replicate(0.,Npar)
        use_polarization=0
      END
      'G17_MODELB':BEGIN
         pd = [ $
             '(*!dustem_params).G0', $      ;G0
             '(*!dustem_params).grains(0).mdust_o_mh',$  ;PAH0 mass fraction
             '(*!dustem_params).grains(1).mdust_o_mh',$     ;PAH1 mass fraction
             '(*!dustem_params).grains(2).mdust_o_mh', $    ;Gra
             '(*!dustem_params).grains(3).mdust_o_mh', $    ;Gra
             '(*!dustem_params).grains(4).mdust_o_mh', $    ;aSil
             'dustem_plugin_continuum_2']                ;Intensity of NIR continuum
        iv =   [1.0,5.4e-4, 5.4e-4,1.8e-4,2.33e-3,8.27e-3,0.001]
        Npar=n_elements(pd)
        ulimed=replicate(0,Npar)
        llimed=replicate(1,Npar)
        llims=replicate(0.,Npar)
        use_polarization=1
     END
      'G17_MODELC':BEGIN

         pd = [ $
             '(*!dustem_params).G0', $      ;G0
             '(*!dustem_params).grains(0).mdust_o_mh',$  ;PAH0 mass fraction
             '(*!dustem_params).grains(1).mdust_o_mh',$     ;PAH1 mass fraction
             '(*!dustem_params).grains(2).mdust_o_mh', $    ;Gra
             '(*!dustem_params).grains(3).mdust_o_mh', $    ;Gra
             '(*!dustem_params).grains(4).mdust_o_mh', $    ;aSil
             'dustem_plugin_continuum_2']                ;Intensity of NIR continuum
        iv =   [1.0,5.4e-4, 5.4e-4,1.8e-4,2.33e-3,8.27e-3,0.001]
        Npar=n_elements(pd)
        ulimed=replicate(0,Npar)
        llimed=replicate(1,Npar)
        llims=replicate(0.,Npar)
        use_polarization=1
      END
      'G17_MODELD':BEGIN
         pd = [ $
             '(*!dustem_params).G0', $      ;G0
             '(*!dustem_params).grains(0).mdust_o_mh',$  ;PAH0 mass fraction
             '(*!dustem_params).grains(1).mdust_o_mh',$     ;PAH1 mass fraction
             '(*!dustem_params).grains(2).mdust_o_mh', $    ;Gra
             '(*!dustem_params).grains(3).mdust_o_mh', $    ;Gra
             '(*!dustem_params).grains(4).mdust_o_mh', $    ;aSil
             'dustem_plugin_continuum_2']                ;Intensity of NIR continuum
        iv =   [1.0,5.4e-4, 5.4e-4,1.8e-4,2.33e-3,8.27e-3,0.001]
        Npar=n_elements(pd)
        ulimed=replicate(0,Npar)
        llimed=replicate(1,Npar)
        llims=replicate(0.,Npar)
        use_polarization=1
     END
      'ELSE':BEGIN
         message,'model '+model+' unknown',/continue
         message,'Known models are MC10,DBP90,DL01,DL07,J13,G17_MODELA,G17_MODELB,G17_MODELC,G17_MODELD',/continue
         stop
      END
ENDCASE



;== INITIALISE DUSTEM
;;  ***COMMENT AH***
;; do we need the use_polarization key word activated here? -->
;; len(kwords) must match Npar_dust (i.e. without plugins), otherwise
;; fails in dustem_read_grain -- should set this within the above case statement?
dustem_init,model=use_model;,kwords=['plaw-ed','logn','plaw-ed','plaw-ed','plaw-ed'];,polarization=use_polarization
;;  ***END COMMENT AH***
!dustem_nocatch=1
!dustem_verbose=1
!dustem_show_plot=1


;=== READ EXAMPLE DATA
dir=!dustem_wrap_soft_dir+'/Data/EXAMPLE_OBSDATA/'
file=dir+'example_SED_1.xcat'
if keyword_set(sed) then file=sed
spec=read_xcat(file,/silent)

;;  ***COMMENT AH***
;; explain what we are doing here -->
ind=where(spec.sigmaII EQ 0.,count)
IF count NE 0 THEN spec[ind].sigmaII=(0.2*spec(ind).StokesI)^2
ind=where(spec.instru EQ 'FIRAS',count)
IF count NE 0 THEN spec[ind].sigmaII=(0.2*spec(ind).StokesI)^2
;;  ***END COMMENT AH***

;== SET THE OBSERVATIONAL STRUCTURE
st=dustem_set_data(m_fit=spec,m_show=spec);sed=spec)

;== SET INITIAL VALUES AND LIMITS OF THE PARAMETERS THAT WILL BE
;== ADJUSTED DURING THE FIT
dustem_init_parinfo,pd,iv,up_limited=ulimed,lo_limited=llimed,up_limits=ulims,lo_limits=llims

;== INITIALIZE ANY PLUGINS
dustem_init_plugins, pd 

;== RUN THE FIT
tol=1.e-16
use_Nitermax=5 ;maximum number of iterations. 
IF keyword_set(itermax) THEN use_Nitermax=itermax

yr=[1.00e-4,1.00E2]
xr=[1.00E0,6.00e4]
tit='Spectral Energy Distribution (Running)'
ytit=textoidl('I_\nu (MJy/sr) for N_H=10^{20} H/cm^2')
xtit=textoidl('\lambda (\mum)')

t1=systime(0,/sec)
res=dustem_mpfit_data(tol=tol,Nitermax=use_Nitermax,gtol=gtol $
                      ,/xlog,/ylog,xr=xr,yr=yr,xtit=xtit,ytit=ytit,title=tit $
                      ,legend_xpos=legend_xpos,legend_ypos=legend_ypos $
                      ,errors=errors,chi2=chi2,rchi2=rchi2)
t2=systime(0,/sec)

;=== SAVE FIT RESULTS
;file_out='/tmp/DUSTEM_fit_example.sav'
if keyword_set(save) then begin
   dir_sav='./'
   dustem_save_system_variables,dir_sav+save
   message,'Saved fit results in '+dir_sav+save,/continue
   if not keyword_set(restore) then $
      restore=dir_sav+save
end
message,'The fit executed in '+strtrim(t2-t1,2)+' sec',/info

;======================================
;====You could exit IDL here. The remaining lines of code (essentially
;====plotting the results) would work by returning to this point
;====restoring the IDL output file that was created above.
;======================================

;file='/tmp/DUSTEM_fit_example.sav'
if keyword_set(restore) then begin
   file=restore
   dustem_restore_system_variables,file
end
   
;== PLOT THE FIT RESULTS RESTORED FROM .SAV FILE
tit='Spectral Energy Distribution (Saved)'
ytit=textoidl('I_\nu (MJy/sr) for N_H=10^{20} H/cm^2')
xtit=textoidl('\lambda (\mum)')
errors=(*(*!dustem_fit).current_param_errors)*(*(*!dustem_fit).param_init_values)
chi2=(*!dustem_fit).chi2
rchi2=(*!dustem_fit).rchi2

res=*(*!dustem_fit).current_param_values
chi2=(*!dustem_fit).chi2
rchi2=(*!dustem_fit).rchi2
errors=(*(*!dustem_fit).current_param_errors)*(*(*!dustem_fit).param_init_values)

;=== PLOT FIT RESULTS AND SAVE TO GRAPHICS FILE IF REQUESTED
window,use_window
loadct,13
IF keyword_set(postscript) THEN BEGIN
;  dir_ps=!dustem_dat+'/Figures/'
  dir_ps='./'
;  force_mkdir,dir_ps
  set_plot,'PS'
  ps_file=dir_ps+postscript
  device,filename=ps_file,/color
ENDIF

dustem_sed_plot,*(*!dustem_fit).current_param_values $
                ,ytit=ytit,xtit=xtit,title=tit $
                ,yr=yr,xr=xr,/ysty,/xsty $
                ,res=res,errors=errors,chi2=chi2,rchi2=rchi2 $
                ,/xlog,/ylog,legend_xpos=legend_xpos,legend_ypos=legend_ypos
IF keyword_set(postscript) THEN BEGIN
  device,/close
  set_plot,'X'
  message,'Wrote '+ps_file,/info
  stop
ENDIF
IF keyword_set(png) THEN BEGIN
;  dir_png=!dustem_dat+'/Figures/'
  dir_png='./'
;  force_mkdir,dir_png
  file_png=dir_png+png
  write_png,file_png,tvrd(/true)
  message,'Wrote '+file_png,/info
ENDIF

message,'Finished dustem_fit_sed_readme',/info

the_end:

END