VOTableDataParser.java
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/*
* This file is a part of EpnTAPClient.
* This program aims to provide EPN-TAP support for software clients, like CASSIS spectrum analyzer.
* See draft specifications: https://voparis-confluence.obspm.fr/pages/viewpage.action?pageId=559861
* Copyright (C) 2016 Institut de Recherche en Astrophysique et Planétologie.
*
* This program is free software: you can
* redistribute it and/or modify it under the terms of the GNU General Public License as published
* by the Free Software Foundation, either version 3 of the License, or (at your option) any later
* version. This program is distributed in the hope that it will be useful, but WITHOUT ANY
* WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
* PURPOSE. See the GNU General Public License for more details. You should have received a copy of
* the GNU General Public License along with this program. If not, see
* <http://www.gnu.org/licenses/>.
*/
package eu.omp.irap.vespa.votable.votabledata;
import java.util.ArrayList;
import java.util.List;
import java.util.logging.Logger;
import eu.omp.irap.vespa.epntapclient.votable.model.Data;
import eu.omp.irap.vespa.epntapclient.votable.model.Field;
import eu.omp.irap.vespa.epntapclient.votable.model.Table;
import eu.omp.irap.vespa.votable.utils.StringJoiner;
import eu.omp.irap.vespa.votable.votable.VOTableException;
import eu.omp.irap.vespa.votable.votable.VOTableException.VOTableIsNotValidException;
/**
* @author N. Jourdane
*/
public class VOTableDataParser {
/** The logger for the class */
private static final Logger LOGGER = Logger.getLogger(VOTableDataParser.class.getName());
/** The data to parse, as an VOTableData object. */
private VOTableData data;
/** The Data XML node in the VOTable, which contains the VOTabla data. */
private Data dataNode;
/**
* A list of all XML Field nodes of the VOTable, which contains informations about the columns,
* like their name.
*/
private List<Field> fieldsNodes;
/**
* In VOTables, data can be stored in 4 different serializations: BINARY, BINARY2, TABLEDATA and
* FITS. This class aims to provide a unique way to get the data table, regardless of its
* serialization type. DO NOT PARSE DATA: data parsing requires parseData() call.
*
* @param datasetTitle The title of the data set.
* @param table The table on which we want get the data.
*/
public VOTableDataParser(String datasetTitle, Table table) {
dataNode = table.getDATA();
fieldsNodes = new ArrayList<>();
for (Object obj : table.getFIELDOrPARAMOrGROUP()) {
if (obj.getClass() == Field.class) {
fieldsNodes.add((Field) obj);
}
}
String[] columnsNames = getColumnsName(fieldsNodes);
data = new VOTableData(datasetTitle, columnsNames);
LOGGER.info("Columns names: " + StringJoiner.join(columnsNames));
}
/**
* Parse the list of Field node and returns the list a columns names.
*
* @param fieldsNodes A list of all XML Field nodes of the VOTable, which contains informations
* about the columns, like their name.
* @return The list of column names corresponding to the list of Field nodes.
*/
private static String[] getColumnsName(List<Field> fieldsNodes) {
String[] columnsName = new String[fieldsNodes.size()];
for (int i = 0; i < fieldsNodes.size(); i++) {
columnsName[i] = fieldsNodes.get(i).getName();
}
return columnsName;
}
/**
* @return the data stored in the Table.
*/
public VOTableData getData() {
return data;
}
/**
* Parse the data stored in the VOTable.
*
* @return The data stored in the VOTable, as a VOTableData object.
* @throws VOTableException The VOTable is not valid, or can not be parsed.
*/
public VOTableData parseData() throws VOTableException {
DataParser parser;
if (dataNode.getBINARY() != null) {
parser = new BinaryStreamParser(dataNode.getBINARY().getSTREAM(), fieldsNodes);
} else if (dataNode.getBINARY2() != null) {
parser = new Binary2StreamParser(dataNode.getBINARY2().getSTREAM(), fieldsNodes);
} else if (dataNode.getTABLEDATA() != null) {
parser = new TableDataParser(dataNode.getTABLEDATA(), fieldsNodes);
} else if (dataNode.getFITS() != null) {
parser = new FitsParser(dataNode.getFITS(), fieldsNodes);
} else {
throw new VOTableIsNotValidException("Can not locate the data in the VOTable.");
}
data.setData(parser.parse());
return data;
}
/**
* @return the fieldsNodes
*/
public List<Field> getFieldsNodes() {
return fieldsNodes;
}
}