BinaryStreamParser.java
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/*
* This file is a part of EpnTAPClient.
* This program aims to provide EPN-TAP support for software clients, like CASSIS spectrum analyzer.
* See draft specifications: https://voparis-confluence.obspm.fr/pages/viewpage.action?pageId=559861
* Copyright (C) 2016 Institut de Recherche en Astrophysique et Planétologie.
*
* This program is free software: you can
* redistribute it and/or modify it under the terms of the GNU General Public License as published
* by the Free Software Foundation, either version 3 of the License, or (at your option) any later
* version. This program is distributed in the hope that it will be useful, but WITHOUT ANY
* WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
* PURPOSE. See the GNU General Public License for more details. You should have received a copy of
* the GNU General Public License along with this program. If not, see
* <http://www.gnu.org/licenses/>.
*/
package eu.omp.irap.vespa.votable.votabledata;
import java.nio.BufferUnderflowException;
import java.nio.ByteBuffer;
import java.util.ArrayList;
import java.util.List;
import java.util.StringJoiner;
import java.util.logging.Level;
import java.util.logging.Logger;
import javax.xml.bind.DatatypeConverter;
import eu.omp.irap.vespa.epntapclient.votable.model.DataType;
import eu.omp.irap.vespa.epntapclient.votable.model.Field;
import eu.omp.irap.vespa.epntapclient.votable.model.Stream;
import eu.omp.irap.vespa.votable.votable.VOTableException.CantParseVOTableException;
/**
* @author N. Jourdane
*/
public final class BinaryStreamParser implements DataParser {
/** The logger for the class BinaryStreamParser. */
private static final Logger LOGGER = Logger.getLogger(BinaryStreamParser.class.getName());
/** The XML nodes of VOTable document, containing the column names. */
private List<Field> fieldsNodes;
/** The byte array stored in the VOTable Table stream (if any). */
private int rowSize;
/** The stream to parse, containing data (column rows) stored in the VOTable. */
private ByteBuffer stream;
/**
* Constructor of BinaryStreamParser.
*
* @param voStream The stream to parse, containing data (column rows) stored in the VOTable.
* @param fieldsNodes the field XML nodes in VOTable document, containing the column names.
* @see <a href="http://www.ivoa.net/documents/REC/VOTable/VOTable-20040811.html#ToC35">The
* Binary serialization in the VOTable REC.</a>
*/
public BinaryStreamParser(Stream voStream, List<Field> fieldsNodes) {
this.fieldsNodes = fieldsNodes;
String strStream = voStream.getValue().replaceAll("(\\r|\\n)", "");
stream = ByteBuffer.wrap(DatatypeConverter.parseBase64Binary(strStream));
}
/**
* Get the size of data block according to its type.
*
* @param dataType The type of the data block, as described in the VOTable REC. See
* http://www.ivoa.net/documents/REC/VOTable/VOTable-20040811.html#ToC11
* @return The size of the block, in bytes.
*/
private static int getBlockSize(DataType dataType) {
int blockSize;
switch (dataType) {
case BOOLEAN:
case UNSIGNED_BYTE:
case CHAR:
blockSize = 1;
break;
case SHORT:
case UNICODE_CHAR:
blockSize = 2;
break;
case INT:
case FLOAT:
blockSize = 4;
break;
case LONG:
case DOUBLE:
case FLOAT_COMPLEX:
blockSize = 8;
break;
case DOUBLE_COMPLEX:
blockSize = 16;
break;
default:
blockSize = 0;
break;
}
return blockSize;
}
@Override
public List<Object[]> parse() throws CantParseVOTableException {
List<Object[]> data = new ArrayList<>();
int nbColumns = fieldsNodes.size();
BinaryStreamParser.LOGGER
.info("Parsing data (" + nbColumns + " columns) in BINARY stream...");
Object[] row = new Object[nbColumns];
int nValue = 0;
while (stream.hasRemaining()) {
int colId = nValue % nbColumns;
Field column = fieldsNodes.get(colId);
rowSize = getRowSize(column, stream);
// May be useful: if arraySize == 0, continue
if (colId == 0) {
row = new Object[nbColumns];
}
row[colId] = processDataBlock(column.getDatatype(), rowSize, stream);
if (colId == nbColumns - 1) {
data.add(row);
}
nValue++;
}
return data;
}
/**
* @param column The XML node of the VOTable data, containing informations about the column,
* like the data primitive type.
* @param byteBuffer The stream.
* @return The size of the row, in bytes.
* @throws BufferUnderflowException Can not get the array size because there is no bytes to read
* in the stream.
*/
private static int getRowSize(Field column, ByteBuffer byteBuffer) {
DataType dataType = column.getDatatype();
int blockSize = getBlockSize(dataType);
int arraySize;
if (column.getArraysize() == null) {
arraySize = blockSize;
} else if ("*".equals(column.getArraysize())) {
try {
arraySize = byteBuffer.getInt() * blockSize;
} catch (BufferUnderflowException e) {
LOGGER.log(Level.SEVERE, "No space left on stream, can not get array size", e);
throw new BufferUnderflowException();
}
} else {
arraySize = Integer.parseInt(column.getArraysize()) * blockSize;
}
return arraySize;
}
/**
* @param dataType The type of the data block.
* @return An object representing the data. It can be any of the primitive type defined in the
* VOtableREC. See http://www.ivoa.net/documents/REC/VOTable/VOTable-20040811.html#ToC11
*/
private static Object processDataBlock(DataType dataType, int rowSize, ByteBuffer stream) {
Object dataBlock;
int blockSize = getBlockSize(dataType);
int nbElement = blockSize == 0 ? 0 : rowSize / blockSize;
if (nbElement == 0) {
return "";
}
if (dataType.equals(DataType.BOOLEAN)) {
dataBlock = processBoolean(nbElement, stream);
} else if (dataType.equals(DataType.UNSIGNED_BYTE)) {
dataBlock = processUnsignedByte(nbElement, stream);
} else if (dataType.equals(DataType.SHORT)) {
dataBlock = processShort(nbElement, stream);
} else if (dataType.equals(DataType.INT)) {
dataBlock = processInt(nbElement, stream);
} else if (dataType.equals(DataType.LONG)) {
dataBlock = processLong(nbElement, stream);
} else if (dataType.equals(DataType.CHAR)) {
dataBlock = processChar(nbElement, stream);
} else if (dataType.equals(DataType.UNICODE_CHAR)) {
dataBlock = processUnicodeChar(nbElement, stream);
} else if (dataType.equals(DataType.FLOAT)) {
dataBlock = processFloat(nbElement, stream);
} else if (dataType.equals(DataType.DOUBLE)) {
dataBlock = processDouble(nbElement, stream);
} else if (dataType.equals(DataType.FLOAT_COMPLEX)) {
dataBlock = processFloatComplex(nbElement, stream);
} else if (dataType.equals(DataType.DOUBLE_COMPLEX)) {
dataBlock = processDoubleComplex(nbElement, stream);
} else {
BinaryStreamParser.LOGGER.warning("Data type " + dataType + " is not supported.");
dataBlock = null;
}
return dataBlock;
}
/**
* Process a double complex data type and return the result.
*
* @param nbElement The number of element inside the byte buffer.
* @param byteBuffer The Byte Buffer used.
* @return The processed data.
*/
private static Object processDoubleComplex(int nbElement, ByteBuffer byteBuffer) {
Object dataBlock;
if (nbElement != 1) {
StringJoiner sj = new StringJoiner(" ", "", "");
for (int i = 0; i < nbElement; i++) {
sj.add(String.valueOf(byteBuffer.getDouble()));
sj.add(String.valueOf(byteBuffer.getDouble()));
}
dataBlock = sj.toString();
} else {
StringJoiner sj = new StringJoiner(" ", "", "");
sj.add(String.valueOf(byteBuffer.getDouble()));
sj.add(String.valueOf(byteBuffer.getDouble()));
dataBlock = sj.toString();
}
return dataBlock;
}
/**
* Process a float complex data type and return the result.
*
* @param nbElement The number of element inside the byte buffer.
* @param byteBuffer The Byte Buffer used.
* @return The processed data.
*/
private static Object processFloatComplex(int nbElement, ByteBuffer byteBuffer) {
Object dataBlock;
if (nbElement != 1) {
StringJoiner sj = new StringJoiner(" ", "", "");
for (int i = 0; i < nbElement; i++) {
sj.add(String.valueOf(byteBuffer.getFloat()));
sj.add(String.valueOf(byteBuffer.getFloat()));
}
dataBlock = sj.toString();
} else {
StringJoiner sj = new StringJoiner(" ", "", "");
sj.add(String.valueOf(byteBuffer.getFloat()));
sj.add(String.valueOf(byteBuffer.getFloat()));
dataBlock = sj.toString();
}
return dataBlock;
}
/**
* Process a double data type and return the result.
*
* @param nbElement The number of element inside the byte buffer.
* @param byteBuffer The Byte Buffer used.
* @return The processed data.
*/
private static Object processDouble(int nbElement, ByteBuffer byteBuffer) {
Object dataBlock;
if (nbElement != 1) {
StringJoiner sj = new StringJoiner(" ", "", "");
for (int i = 0; i < nbElement; i++) {
sj.add(String.valueOf(byteBuffer.getDouble()));
}
dataBlock = sj.toString();
} else {
dataBlock = byteBuffer.getDouble();
}
return dataBlock;
}
/**
* Process a float data type and return the result.
*
* @param nbElement The number of element inside the byte buffer.
* @param byteBuffer The Byte Buffer used.
* @return The processed data.
*/
private static Object processFloat(int nbElement, ByteBuffer byteBuffer) {
Object dataBlock;
if (nbElement != 1) {
StringJoiner sj = new StringJoiner(" ", "", "");
for (int i = 0; i < nbElement; i++) {
sj.add(String.valueOf(byteBuffer.getFloat()));
}
dataBlock = sj.toString();
} else {
dataBlock = byteBuffer.getFloat();
}
return dataBlock;
}
/**
* Process a unicode char data type and return the result.
*
* @param nbElement The number of element inside the byte buffer.
* @param byteBuffer The Byte Buffer used.
* @return The processed data.
*/
private static Object processUnicodeChar(int nbElement, ByteBuffer byteBuffer) {
Object dataBlock;
String value = new String();
for (int i = 0; i < nbElement * 2; i += 2) {
value += byteBuffer.getChar();
}
dataBlock = value.trim();
return dataBlock;
}
/**
* Process a char data type and return the result.
*
* @param nbElement The number of element inside the byte buffer.
* @param byteBuffer The Byte Buffer used.
* @return The processed data.
*/
private static Object processChar(int nbElement, ByteBuffer byteBuffer) {
Object dataBlock;
String value = new String();
for (int i = 0; i < nbElement && byteBuffer.position() < byteBuffer.limit(); i++) {
value += (char) byteBuffer.get();
}
dataBlock = value.trim();
return dataBlock;
}
/**
* Process a long data type and return the result.
*
* @param nbElement The number of element inside the byte buffer.
* @param byteBuffer The Byte Buffer used.
* @return The processed data.
*/
private static Object processLong(int nbElement, ByteBuffer byteBuffer) {
Object dataBlock;
if (nbElement != 1) {
StringJoiner sj = new StringJoiner(" ", "", "");
for (int i = 0; i < nbElement; i++) {
sj.add(String.valueOf(byteBuffer.getLong()));
}
dataBlock = sj.toString();
} else {
dataBlock = byteBuffer.getLong();
}
return dataBlock;
}
/**
* Process a int data type and return the result.
*
* @param nbElement The number of element inside the byte buffer.
* @param byteBuffer The Byte Buffer used.
* @return The processed data.
*/
private static Object processInt(int nbElement, ByteBuffer byteBuffer) {
Object dataBlock;
if (nbElement != 1) {
StringJoiner sj = new StringJoiner(" ", "", "");
for (int i = 0; i < nbElement; i++) {
sj.add(String.valueOf(byteBuffer.getInt()));
}
dataBlock = sj.toString();
} else {
dataBlock = byteBuffer.getInt();
}
return dataBlock;
}
/**
* Process a short data type and return the result.
*
* @param nbElement The number of element inside the byte buffer.
* @param byteBuffer The Byte Buffer used.
* @return The processed data.
*/
private static Object processShort(int nbElement, ByteBuffer byteBuffer) {
Object dataBlock;
if (nbElement != 1) {
StringJoiner sj = new StringJoiner(" ", "", "");
for (int i = 0; i < nbElement; i++) {
sj.add(String.valueOf(byteBuffer.getShort()));
}
dataBlock = sj.toString();
} else {
dataBlock = byteBuffer.getShort();
}
return dataBlock;
}
/**
* Process a unsigned byte data type and return the result.
*
* @param nbElement The number of element inside the byte buffer.
* @param byteBuffer The Byte Buffer used.
* @return The processed data.
*/
private static Object processUnsignedByte(int nbElement, ByteBuffer byteBuffer) {
Object dataBlock;
if (nbElement != 1) {
StringJoiner sj = new StringJoiner(" ", "", "");
for (int i = 0; i < nbElement; i++) {
sj.add(String.valueOf(byteBuffer.get()));
}
dataBlock = sj.toString();
} else {
dataBlock = byteBuffer.get();
}
return dataBlock;
}
/**
* Process a boolean data type and return the result.
*
* @param nbElement The number of element inside the byte buffer.
* @param byteBuffer The Byte Buffer used.
* @return The processed data.
*/
private static Object processBoolean(int nbElement, ByteBuffer byteBuffer) {
Object dataBlock;
if (nbElement != 1) {
StringJoiner sj = new StringJoiner(" ", "", "");
for (int i = 0; i < nbElement; i++) {
sj.add(String.valueOf(new Boolean(byteBuffer.getInt() == 0 ? false : true)));
}
dataBlock = sj.toString();
} else {
dataBlock = new Boolean(byteBuffer.getInt() == 0 ? false : true);
}
return dataBlock;
}
/**
* Decode then return the value of a TD element base64 encoded.
*
* @param content The content.
* @param field The field.
* @return The decoded value.
*/
public static Object readTdValue(String content, Field field) {
String strStream = content.replaceAll("(\\r|\\n)", "");
ByteBuffer stream = ByteBuffer.wrap(
DatatypeConverter.parseBase64Binary(strStream));
int rowSize = getRowSize(field, stream);
return processDataBlock(field.getDatatype(), rowSize, stream);
}
}