run.py
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# coding=utf-8
from io import StringIO
import datetime
import gzip
import json
import logging
import random
import tarfile
import time
import urllib.request as urllib_request
import requests
import re # regex
import numpy as np
import sys
from csv import writer as csv_writer, DictWriter as csv_dict_writer
from math import sqrt, isnan
from os import environ, remove as removefile
from os.path import isfile, join, abspath, dirname
# (i) Just ignore the requirements warning, we already require `dateutils`.
from dateutil.relativedelta import relativedelta
from dateutil import parser as dateparser
from flask import Flask
from flask import request
from flask import url_for, send_from_directory, abort as abort_flask
from jinja2 import Environment, FileSystemLoader
from jinja2.utils import markupsafe
from yaml import load as yaml_load, dump
try:
from yaml import CLoader as Loader
except ImportError:
from yaml import Loader
from netCDF4 import Dataset, date2num
# PATH RELATIVITY #############################################################
THIS_DIRECTORY = dirname(abspath(__file__))
def get_path(relative_path):
"""Get an absolute path from the relative path to this script directory."""
return abspath(join(THIS_DIRECTORY, relative_path))
# COLLECT GLOBAL INFORMATION FROM SOURCES #####################################
# VERSION
with open(get_path('../VERSION'), 'r') as version_file:
version = version_file.read().strip()
# CONFIG
with open(get_path('../config.yml'), 'r', encoding='utf8') as config_file:
config = yaml_load(config_file.read(), Loader=Loader)
FILE_DATE_FMT = "%Y-%m-%dT%H:%M:%S"
MOMENT_DATE_FMT = "%Y-%m-%dT%H:%M:%SZ"
CME_DATE_FMT = "%Y-%m-%dT%H:%MZ"
# Are we on the SSA instance for ESA?
SSA = environ.get('SSA') == 'true'
DEBUG = environ.get('DEBUG') == 'true'
# SSA = True
# LOGGING #####################################################################
LOG_FILE = get_path('run.log')
log = logging.getLogger("HelioPropa")
if DEBUG:
log.setLevel(logging.DEBUG)
else:
log.setLevel(logging.ERROR)
logHandler = logging.FileHandler(LOG_FILE)
logHandler.setFormatter(logging.Formatter(
"%(asctime)s - %(levelname)s - %(message)s"
))
log.addHandler(logHandler)
# HARDCODED CONFIGURATION #####################################################
ASTRONOMICAL_UNIT_IN_KM = 1.496e8
# Absolute path to the installed CDF library from https://cdf.gsfc.nasa.gov/
CDF_LIB = '/usr/local/lib/libcdf'
# Absolute path to the data cache directory
CACHE_DIR = get_path('../cache')
# These two configs are not in the YAML config because adding a new parameter
# will not work as-is, you'd have to edit some netcdf-related code.
# The slugs of the available parameters in the generated CSV files.
# The order matters. If you change this you also need to change the
# innermost loop of `get_data_for_target`.
# The javascript knows the targets' properties under these names.
PROPERTIES = ('time', 'vrad', 'vtan', 'vtot', 'btan', 'temp', 'pdyn', 'dens',
'atse', 'xhee', 'yhee')
# The parameters that the users can handle.
# The slug MUST be one of the properties above.
PARAMETERS = {
'pdyn': {
'slug': 'pdyn',
'name': 'Dyn. Pressure',
'title': 'The dynamic pressure.',
'units': 'nPa',
'active': True,
'position': 10,
},
'vtot': {
'slug': 'vtot',
'name': 'Velocity',
'title': 'The velocity of the particles.',
'units': 'km/s',
'active': False,
'position': 20,
},
'btan': {
'slug': 'btan',
'name': 'B Tangential',
'title': 'B Tangential.',
'units': 'nT',
'active': False,
'position': 30,
},
'temp': {
'slug': 'temp',
'name': 'Temperature',
'title': 'The temperature.',
'units': 'eV',
'active': False,
'position': 40,
},
'dens': {
'slug': 'dens',
'name': 'Density',
'title': 'The density N.',
'units': 'cm^-3',
'active': False,
'position': 50,
},
'atse': {
'slug': 'atse',
'name': 'Angle T-S-E',
'title': 'Angle Target-Sun-Earth.',
'units': 'deg',
'active': False,
'position': 60,
},
}
# SETUP ENVIRONMENT ###########################################################
environ['SPACEPY'] = CACHE_DIR
environ['CDF_LIB'] = CDF_LIB
# SETUP FLASK ENGINE ##########################################################
app = Flask(__name__, root_path=THIS_DIRECTORY)
app.debug = DEBUG
if app.debug:
log.info("Starting Flask app IN DEBUG MODE...")
else:
log.info("Starting Flask app...")
def handle_error(e):
log.error(e)
return str(e) # wish we could use the default error renderer here
app.register_error_handler(Exception, handle_error)
# SETUP JINJA2 TEMPLATE ENGINE ################################################
def static_global(filename):
return url_for('static', filename=filename)
def shuffle_filter(seq):
"""
This shuffles the sequence it is applied to.
Jinja2 _should_ provide this.
"""
try:
result = list(seq)
random.shuffle(result)
return result
except:
return seq
def markdown_filter(value, nl2br=False, p=True):
"""
Converts markdown into html.
nl2br: set to True to replace line breaks with <br> tags
p: set to False to remove the enclosing <p></p> tags
"""
from markdown import markdown
from markdown.extensions.nl2br import Nl2BrExtension
from markdown.extensions.abbr import AbbrExtension
extensions = [AbbrExtension()]
if nl2br is True:
extensions.append(Nl2BrExtension())
markdowned = markdown(value, output_format='html5', extensions=extensions)
if p is False:
markdowned = markdowned.replace(r"<p>", "").replace(r"</p>", "")
return markdowned
_js_escapes = {
'\\': '\\u005C',
'\'': '\\u0027',
'"': '\\u0022',
'>': '\\u003E',
'<': '\\u003C',
'&': '\\u0026',
'=': '\\u003D',
'-': '\\u002D',
';': '\\u003B',
u'\u2028': '\\u2028',
u'\u2029': '\\u2029'
}
# Escape every ASCII character with a value less than 32.
_js_escapes.update(('%c' % z, '\\u%04X' % z) for z in range(32))
def escapejs_filter(value):
escaped = []
for letter in value:
if letter in _js_escapes:
escaped.append(_js_escapes[letter])
else:
escaped.append(letter)
return markupsafe.Markup("".join(escaped))
tpl_engine = Environment(loader=FileSystemLoader([get_path('view')]),
trim_blocks=True,
lstrip_blocks=True)
tpl_engine.globals.update(
url_for=url_for,
static=static_global,
)
tpl_engine.filters['markdown'] = markdown_filter
tpl_engine.filters['md'] = markdown_filter
tpl_engine.filters['shuffle'] = shuffle_filter
tpl_engine.filters['escapejs'] = escapejs_filter
tpl_global_vars = {
'request': request,
'version': version,
'config': config,
'now': datetime.datetime.now(),
'is_esa': SSA,
}
# HELPERS #####################################################################
def abort(code, message):
log.error("Abort: " + message)
abort_flask(code, message)
def render_view(view, context=None):
"""
A simple helper to render [view] template with [context] vars.
It automatically adds the global template vars defined above, too.
It returns a string, usually the HTML contents to display.
"""
context = {} if context is None else context
return tpl_engine.get_template(view).render(
dict(list(tpl_global_vars.items()) + list(context.items()))
)
# def render_page(page, title="My Page", context=None):
# """
# A simple helper to render the md_page.html template with [context] vars &
# the additional contents of `page/[page].md` in the `md_page` variable.
# It automagically adds the global template vars defined above, too.
# It returns a string, usually the HTML contents to display.
# """
# if context is None:
# context = {}
# context['title'] = title
# context['md_page'] = ''
# with file(get_path('page/%s.md' % page)) as f:
# context['md_page'] = f.read()
# return tpl_engine.get_template('md_page.html').render(
# dict(tpl_global_vars.items() + context.items())
# )
def is_list_in_list(needle, haystack):
for n in needle:
if n not in haystack:
return False
return True
def round_time(dt=None, round_to=60):
"""
Round a datetime object to any time laps in seconds
dt : datetime.datetime object, default now.
roundTo : Closest number of seconds to round to, default 1 minute.
"""
if dt is None:
dt = datetime.datetime.now()
seconds = (dt.replace(tzinfo=None) - dt.min).seconds
rounding = (seconds + round_to / 2) // round_to * round_to
return dt + datetime.timedelta(0, rounding - seconds, -dt.microsecond)
def datetime_from_list(time_list):
"""
Datetimes in retrieved CDFs are stored as lists of numbers,
with DayOfYear starting at 0. We want it starting at 1 because it's what
vendor parsers use, both in python and javascript.
"""
try:
time_list = [str(i, 'UTF8') for i in time_list]
except Exception as e:
log.error(e)
# Day Of Year starts at 0, but for our datetime parser it starts at 1
doy = '{:03d}'.format(int(''.join(time_list[4:7])) + 1)
return datetime.datetime.strptime(
"%s%s%s" % (''.join(time_list[0:4]), doy, ''.join(time_list[7:-1])),
"%Y%j%H%M%S%f"
)
# Override these using the model configuration in config.yml
default_nc_keys = {
'hee': 'HEE',
'vtot': 'V',
'magn': 'B',
'temp': 'T',
'dens': 'N',
'pdyn': 'P_dyn',
'atse': 'Delta_angle',
}
def _sta_sto(_cnf, _sta, _sto):
if 'started_at' in _cnf:
_s0 = datetime.datetime.strptime(_cnf['started_at'], FILE_DATE_FMT)
_s0 = max(_s0, _sta)
else:
_s0 = _sta
if 'stopped_at' in _cnf:
_s1 = datetime.datetime.strptime(_cnf['stopped_at'], FILE_DATE_FMT)
_s1 = min(_s1, _sto)
else:
_s1 = _sto
return _s0, _s1
def _read_var(_nc, _keys, _key, mandatory=False):
try:
return _nc.variables[_keys[_key]][:]
except KeyError:
pass
if mandatory:
raise Exception("No variable '%s' found in NetCDF." % _keys[_key])
return [None] * len(_nc.variables['Time']) # slow -- use numpy!
def get_local_filename(url):
"""
Build the local cache filename for the distant file
:param url: string
:return: string
"""
from slugify import slugify
n = len('http://')
if url.startswith('https'):
n += 1
s = url[n:]
return slugify(s)
def get_target_config(slug):
for s in config['targets']: # dumb
if s['slug'] == slug:
return s
raise Exception("No target found in configuration for '%s'." % slug)
def check_target_config(slug):
get_target_config(slug)
def get_active_targets():
all_targets = config['targets']
return [t for t in all_targets if not ('locked' in t and t['locked'])]
def validate_tap_target_config(target):
tc = get_target_config(target)
if 'tap' not in tc:
raise Exception("No `tap` configuration for target `%s`." % target)
if 'target_name' not in tc['tap']:
raise Exception("No `target_name` in the `tap` configuration for target `%s`." % target)
return tc
# Using pyvo would be best.
# def retrieve_auroral_emissions_vopy(target_name):
# api_url = "http://voparis-tap.obspm.fr/__system__/tap/run/tap/sync"
# import pyvo as vo
# service = vo.dal.TAPService(api_url)
# # … can't figure out how to install pyvo and spacepy alongside (forking?)
def retrieve_auroral_emissions(target_name, d_started_at=None, d_stopped_at=None):
"""
Work In Progress.
:param target_name: You should probably not let users define this value,
as our sanitizing for ADQL may not be 100% safe.
Use values from YAML configuration, instead.
Below is a list of the ids we found to be existing.
> SELECT DISTINCT target_name FROM apis.epn_core
- Jupiter
- Saturn
- Mars
- MERCURY
- Titan
- Io
- VENUS
- Ganymede
- Uranus
- Callisto
- Europa
https://pdssbn.astro.umd.edu/holdings/nh-p-rex-2-pluto-v1.0/document/codmac_level_definitions.pdf
processing_level == 3
API doc and sandbox:
http://voparis-tap-planeto.obspm.fr/__system__/tap/run/info
:return:
"""
# Try out the form
# http://voparis-tap-planeto.obspm.fr/__system__/adql/query/form
api_url = "http://voparis-tap.obspm.fr/__system__/tap/run/tap/sync"
if d_started_at is None:
d_started_at = datetime.datetime.now()
t_started_at = time.mktime(d_started_at.timetuple()) - 3600 * 24 * 365 * 2
# t_started_at = 1
else:
t_started_at = time.mktime(d_started_at.timetuple())
if d_stopped_at is None:
d_stopped_at = datetime.datetime.now()
t_stopped_at = time.mktime(d_stopped_at.timetuple())
def timestamp_to_jday(timestamp):
return timestamp / 86400.0 + 2440587.5
def jday_to_timestamp(jday):
return (jday - 2440587.5) * 86400.0
def jday_to_datetime(jday):
return datetime.datetime.utcfromtimestamp(jday_to_timestamp(jday))
# SELECT DISTINCT dataproduct_type FROM apis.epn_core
# > im sp sc
query = """
SELECT
time_min,
time_max,
thumbnail_url,
external_link
FROM apis.epn_core
WHERE target_name='{target_name}'
AND dataproduct_type='im'
AND time_min >= {jday_start}
AND time_min <= {jday_stop}
ORDER BY time_min, granule_gid
""".format(
target_name=target_name.replace("'", "\\'"),
jday_start=timestamp_to_jday(t_started_at),
jday_stop=timestamp_to_jday(t_stopped_at)
)
# AND processing_level = 4
# query = """
# SELECT DISTINCT target_name FROM apis.epn_core
# """
try:
response = requests.post(api_url, {
'REQUEST': 'doQuery',
'LANG': 'ADQL',
'QUERY': query,
'TIMEOUT': '30',
'FORMAT': 'VOTable/td'
})
response_xml = response.text
import xml.etree.ElementTree as ET
root = ET.fromstring(response_xml)
namespaces = {'vo': 'http://www.ivoa.net/xml/VOTable/v1.3'}
rows_xpath = "./vo:RESOURCE/vo:TABLE/vo:DATA/vo:TABLEDATA/vo:TR"
rows = []
for row in root.findall(rows_xpath, namespaces):
rows.append({
'time_min': jday_to_datetime(float(row[0].text)),
'time_max': jday_to_datetime(float(row[1].text)),
'thumbnail_url': row[2].text,
'external_link': row[3].text,
})
return rows
except Exception as e:
print("Failed to retrieve auroral emissions :")
print(e)
# print(query)
def retrieve_amda_netcdf(orbiter, what, started_at, stopped_at):
"""
Handles remote querying AMDA's API for URLs, and then downloading,
extracting and caching the netCDF files.
:param orbiter: key of the source in the YAML config
:param what: either 'model' or 'orbit', a key in the config of the source
:param started_at:
:param stopped_at:
:return: a list of local file paths to netCDF (.nc) files
"""
url = config['amda'].format(
dataSet=what,
startTime=started_at.isoformat(),
stopTime=stopped_at.isoformat()
)
log.info("Fetching remote gzip files list at '%s'." % url)
retries = 0
success = False
errors = []
remote_gzip_files = []
while not success and retries < 3:
try:
response = urllib_request.urlopen(url)
remote_gzip_files = json.loads(response.read())
if not remote_gzip_files:
raise Exception("Failed to fetch data at '%s'." % url)
if remote_gzip_files == 'NODATASET':
raise Exception("API says there's no dataset at '%s'." % url)
if remote_gzip_files == 'ERROR':
raise Exception("API returned an error at '%s'." % url)
if remote_gzip_files == ['OUTOFTIME']: # it happens
return []
# raise Exception("API says it's out of time at '%s'." % url)
success = True
except Exception as e:
log.warning("Failed (%d/3) '%s' : %s" % (retries + 1, url, e.message))
remote_gzip_files = []
errors.append(e)
finally:
retries += 1
if not remote_gzip_files:
log.error("Failed to retrieve data from AMDA.")
log.error("Failed to fetch gzip files list for %s at '%s' : %s" %
(orbiter, url, errors))
abort(400, "Failed to fetch gzip files list for %s at '%s' : %s" %
(orbiter, url, errors))
else:
remote_gzip_files = list(set(remote_gzip_files))
log.debug("Fetched remote gzip files list : %s." % str(remote_gzip_files))
local_gzip_files = []
for remote_gzip_file in remote_gzip_files:
# hotfixes to remove when fixed upstream @Myriam
if remote_gzip_file in ['OUTOFTIME', 'ERROR']:
continue # sometimes half the response is okay, the other not
if remote_gzip_file.endswith('/.gz'):
continue # this is just a plain bug
remote_gzip_file = remote_gzip_file.replace('cdpp1', 'cdpp', 1)
################################################
local_gzip_file = join(CACHE_DIR, get_local_filename(remote_gzip_file))
local_gzip_files.append(local_gzip_file)
if not isfile(local_gzip_file):
log.debug("Retrieving '%s'..." % local_gzip_file)
urllib_request.urlretrieve(remote_gzip_file, local_gzip_file)
log.debug("Retrieved '%s'." % local_gzip_file)
else:
log.debug("Found '%s' in the cache." % local_gzip_file)
local_netc_files = []
for local_gzip_file in local_gzip_files:
local_netc_file = local_gzip_file[0:-3]
log.debug("Unzipping '%s'..." % local_gzip_file)
success = True
try:
with gzip.open(local_gzip_file) as f:
file_content = f.read()
with open(local_netc_file, 'w+b') as g:
g.write(file_content)
except Exception as e:
success = False
log.error("Cannot process gz file '%s' from '%s' : %s" %
(local_gzip_file, url, e))
# Sometimes, the downloaded gz is corrupted, and CRC checks fail.
# We want to delete the local gz file and try again next time.
removefile(local_gzip_file)
if success:
local_netc_files.append(local_netc_file)
log.debug("Unzipped '%s'." % local_gzip_file)
return list(set(local_netc_files)) # remove possible dupes
# class DataParser:
# """
# Default data parser
# A wip to try to handle code exeptions sanely.
# """
#
# # Override these using the model configuration
# default_nc_keys = {
# 'hee': 'HEE',
# 'vtot': 'V',
# 'magn': 'B',
# 'temp': 'T',
# 'dens': 'N',
# 'pdyn': 'P_dyn',
# 'atse': 'Delta_angle',
# }
#
# def __init__(self, target, model):
# self.target = target
# self.model = model
# pass
#
# def _read_var(self, nc, _keys, _key, mandatory=False):
# try:
# return nc.variables[_keys[_key]]
# except KeyError:
# pass
# if mandatory:
# raise Exception("No variable '%s' found in NetCDF." % _keys[_key])
# return [None] * len(nc.variables['Time']) # slow -- use numpy?
#
# def parse(self, cdf_handle):
# nc_keys = self.default_nc_keys.copy()
#
# times = cdf_handle.variables['Time'] # YYYY DOY HH MM SS .ms
# data_v = self._read_var(cdf_handle, nc_keys, 'vtot')
# data_b = self._read_var(cdf_handle, nc_keys, 'magn')
# data_t = self._read_var(cdf_handle, nc_keys, 'temp')
# data_n = self._read_var(cdf_handle, nc_keys, 'dens')
# data_p = self._read_var(cdf_handle, nc_keys, 'pdyn')
# data_a = self._read_var(cdf_handle, nc_keys, 'atse')
#
# return zip()
def get_data_for_target(target_config, input_slug,
started_at, stopped_at):
"""
:return: dict whose keys are datetime as str, values tuples of data
"""
log.debug("Grabbing data for '%s'..." % target_config['slug'])
try:
models = target_config['models'][input_slug]
except Exception as e:
abort(500, "Invalid model configuration for '%s' : %s"
% (target_config['slug'], str(e)))
try:
orbits = target_config['orbit']['models']
except KeyError as e:
orbits = []
# abort(500, "Invalid orbit configuration for '%s' : %s"
# % (target_config['slug'], str(e)))
precision = "%Y-%m-%dT%H" # model and orbits times are only equal-ish
orbit_data = {} # keys are datetime as str, values arrays of XY
for orbit in orbits:
s0, s1 = _sta_sto(orbit, started_at, stopped_at)
nc_keys = default_nc_keys.copy()
if 'parameters' in orbit:
nc_keys.update(orbit['parameters'])
orbit_files = retrieve_amda_netcdf(
target_config['slug'], orbit['slug'], s0, s1
)
for orbit_file in orbit_files:
log.debug("%s: opening orbit NETCDF4 '%s'..." %
(target_config['name'], orbit_file))
cdf_handle = Dataset(orbit_file, "r", format="NETCDF4")
times = cdf_handle.variables['Time'] # YYYY DOY HH MM SS .ms
data_hee = _read_var(cdf_handle, nc_keys, 'hee', mandatory=True)
log.debug("%s: aggregating data from '%s'..." %
(target_config['name'], orbit_file))
for ltime, datum_hee in zip(times, data_hee):
try:
dtime = datetime_from_list(ltime)
except Exception:
log.error("Failed to parse time from get__data_for_target %s." % ltime)
raise
# Keep only what's in the interval
if s0 <= dtime <= s1:
dkey = round_time(dtime, 60 * 60).strftime(precision)
orbit_data[dkey] = datum_hee
cdf_handle.close()
all_data = {} # keys are datetime as str, values tuples of data
for model in models:
s0, s1 = _sta_sto(model, started_at, stopped_at)
model_files = retrieve_amda_netcdf(
target_config['slug'], model['slug'], s0, s1
)
nc_keys = default_nc_keys.copy()
if 'parameters' in model:
nc_keys.update(model['parameters'])
if len(model_files) == 0:
log.warning("No model data for '%s' '%s'."
% (target_config['slug'], model['slug']))
for model_file in model_files:
log.debug("%s: opening model NETCDF4 '%s'..." %
(target_config['name'], model_file))
cdf_handle = Dataset(model_file, "r", format="NETCDF4")
# log.debug(cdf_handle.variables.keys())
times = cdf_handle.variables['Time'] # YYYY DOY HH MM SS .ms
data_v = _read_var(cdf_handle, nc_keys, 'vtot')
data_b = _read_var(cdf_handle, nc_keys, 'magn')
data_t = _read_var(cdf_handle, nc_keys, 'temp')
data_n = _read_var(cdf_handle, nc_keys, 'dens')
data_p = _read_var(cdf_handle, nc_keys, 'pdyn')
data_a = _read_var(cdf_handle, nc_keys, 'atse')
# Usually:
# Time, StartTime, StopTime, V, B, N, T, Delta_angle, P_dyn
# Earth:
# Time, BartelsNumber, ImfID, SwID, ImfPoints,
# SwPoints, B_M_av, B_Vec_av, B_Theta_av,
# B_Phi_av, B, T, N, V, Vlat, Vlon,
# Alpha, RamP, E, Beta, Ma, Kp, R, DST,
# AE, Flux, Flag, F10_Index, StartTime, StopTime
# Don't ignore, but instead, compute a mean ?
# Look for discretisation ? temporal drizzling ? 1D drizzling ?
# The easy linear mean feels a bit rough too. Running mean too.
# FIXME
ignored_count = 0
log.debug("%s: aggregating data from '%s'..." %
(target_config['name'], model_file))
for ltime, datum_v, datum_b, datum_t, datum_n, datum_p, datum_a \
in zip(times, data_v, data_b, data_t, data_n, data_p, data_a):
try:
dtime = datetime_from_list(ltime)
except Exception:
log.error("Failed to parse time from %s." % ltime)
raise
if not (s0 <= dtime <= s1):
continue # Cull what's out of the interval
droundtime = round_time(dtime, 60 * 60)
dkey = droundtime.strftime(precision)
x_hee = None
y_hee = None
if dkey in orbit_data:
x_hee = orbit_data[dkey][0] / ASTRONOMICAL_UNIT_IN_KM
y_hee = orbit_data[dkey][1] / ASTRONOMICAL_UNIT_IN_KM
# First exception: V may be a vector instead of a scalar
if hasattr(datum_v, '__len__'):
vrad = datum_v[0]
vtan = datum_v[1]
vtot = sqrt(vrad * vrad + vtan * vtan)
else: # eg: Earth
vrad = None
vtan = None
vtot = datum_v
# Second exception: Earth is always at (1, 0)
if target_config['slug'] == 'earth':
x_hee = 1
y_hee = 0
# Third exception: B is a Vector3 or a Vector2 for Earth
if target_config['slug'] == 'earth':
if model['slug'] == 'omni_hour_all': # Vector3
datum_b = datum_b[0]
# if model['slug'] == 'ace_swepam_real': # Vector2
# datum_b = datum_b[0]
if model['slug'] == 'ace_swepam_real_1h':
datum_p = datum_n * vtot * vtot * 1.6726e-6
if vtot is None or isnan(vtot):
continue
# Fourth exception: Earth temp is in K, not eV
# @nandre: à vérifier ! Where is la constante de Boltzmann ?
if target_config['slug'] == 'earth' and datum_t:
datum_t = datum_t / 11605.0
# Keep adding exceptions here until you can't or become mad
# Ignore bad data
# if numpy.isnan(datum_t):
# continue
# Crude/Bad drizzling condition : first found datum in the hour
# gets to set the data. Improve this.
if dkey not in all_data:
# /!. The Set value MUST be in the same order as PROPERTIES
all_data[dkey] = (
dtime.strftime("%Y-%m-%dT%H:%M:%S+00:00"),
vrad, vtan, vtot,
datum_b, datum_t, datum_p, datum_n, datum_a,
x_hee, y_hee
)
else:
ignored_count += 1
# Improve this loop so as to remove this stinky debug log
if ignored_count > 0:
log.debug(" Ignored %d datum(s) during ~\"drizzling\"."
% ignored_count)
cdf_handle.close()
return all_data
def generate_csv_contents(target_slug, input_slug, started_at, stopped_at):
target_config = get_target_config(target_slug)
log.debug("Crunching CSV contents for '%s'..." % target_config['name'])
si = StringIO()
cw = csv_writer(si)
cw.writerow(PROPERTIES)
all_data = get_data_for_target(
target_config=target_config, input_slug=input_slug,
started_at=started_at, stopped_at=stopped_at
)
log.debug("Writing and sorting CSV for '%s'..." % target_config['slug'])
for dkey in sorted(all_data):
cw.writerow(all_data[dkey])
log.info("Generated CSV contents for '%s'." % target_config['slug'])
return si.getvalue()
def generate_csv_file_if_needed(target_slug, input_slug,
started_at, stopped_at):
filename = "%s_%s_%s_%s.csv" % (target_slug, input_slug,
started_at.strftime(FILE_DATE_FMT),
stopped_at.strftime(FILE_DATE_FMT))
local_csv_file = join(CACHE_DIR, filename)
generate = True
if isfile(local_csv_file):
# It needs to have more than one line to not be empty (headers)
with open(local_csv_file) as f:
cnt = 0
for _ in f:
cnt += 1
if cnt > 1:
generate = False
break
if generate:
log.info("Generating CSV '%s'..." % local_csv_file)
try:
with open(local_csv_file, mode="w+") as f:
f.write(generate_csv_contents(
target_slug=target_slug, input_slug=input_slug,
started_at=started_at, stopped_at=stopped_at
))
log.info("Generation of '%s' done." % filename)
except Exception as e:
from sys import exc_info
from traceback import extract_tb
exc_type, exc_value, exc_traceback = exc_info()
log.error(e)
for trace in extract_tb(exc_traceback):
log.error(trace)
if isfile(local_csv_file):
log.warning("Removing failed CSV '%s'..." % local_csv_file)
removefile(local_csv_file)
abort(500, "Failed creating CSV '%s' : %s" % (filename, e))
def remove_all_files(in_directory):
"""
Will throw if something horrible happens.
Does not remove recursively (could be done with os.walk if needed).
Does not remove directories either.
:param in_directory: absolute path to directory
:return:
"""
import os
if not os.path.isdir(in_directory):
raise ValueError("No directory to clean at '%s'.")
removed_files = []
for file_name in os.listdir(in_directory):
file_path = os.path.join(in_directory, file_name)
if os.path.isfile(file_path):
os.remove(file_path)
removed_files.append(file_path)
return removed_files
def remove_files_created_before(date, in_directory):
"""
Will throw if something horrible happens.
Does not remove recursively (could be done with os.walk if needed).
Does not remove directories either.
:param date: datetime object
:param in_directory: absolute path to directory
:return:
"""
import os
import time
secs = time.mktime(date.timetuple())
if not os.path.isdir(in_directory):
raise ValueError("No directory to clean at '%s'.")
removed_files = []
for file_name in os.listdir(in_directory):
file_path = os.path.join(in_directory, file_name)
if os.path.isfile(file_path):
t = os.stat(file_path)
if t.st_ctime < secs:
os.remove(file_path)
removed_files.append(file_path)
return removed_files
def get_input_slug_from_query(inp=None):
if inp is None:
input_slug = request.args.get('input_slug', config['defaults']['input_slug'])
else:
input_slug = inp
if input_slug not in [i['slug'] for i in config['inputs']]:
input_slug = config['defaults']['input_slug'] # be tolerant instead of yelling loudly
return input_slug
def get_interval_from_query():
"""
Get the interval from the query, or from defaults.
Returns ISO date strings.
"""
before = relativedelta(months=1)
after = relativedelta(months=1)
today = datetime.datetime.now().replace(hour=0, minute=0, second=0)
started_at = today - before
stopped_at = today + after
default_started_at = started_at.strftime(FILE_DATE_FMT)
default_stopped_at = stopped_at.strftime(FILE_DATE_FMT)
started_at = request.args.get('started_at', default_started_at)
stopped_at = request.args.get('stopped_at', default_stopped_at)
d_started_at = dateparser.isoparse(started_at)
d_stopped_at = dateparser.isoparse(stopped_at)
started_at = d_started_at.strftime(FILE_DATE_FMT)
stopped_at = d_stopped_at.strftime(FILE_DATE_FMT)
return started_at, stopped_at
def get_catalog_layers(input_slug, target_slug, started_at, stopped_at):
"""
In the JSON file we have "columns" and "data".
Of course, each JSON file has its own columns, with different conventions.
:param input_slug:
:param target_slug:
:return:
"""
import json
def _get_index_of_key(_data, _key):
try:
index = _data['columns'].index(_key)
except ValueError:
log.error("Key %s not found in columns of %s" % (_key, _data))
raise
return index
try:
started_at = datetime.datetime.strptime(started_at, FILE_DATE_FMT)
except:
abort(400, "Invalid started_at parameter : '%s'." % started_at)
try:
stopped_at = datetime.datetime.strptime(stopped_at, FILE_DATE_FMT)
except:
abort(400, "Invalid stopped_at parameter : '%s'." % stopped_at)
catalog_layers = {}
for config_layer in config['layers']['catalogs']:
if 'data' not in config_layer:
continue
catalog_layers[config_layer['slug']] = []
for cl_datum in config_layer['data']:
if input_slug not in cl_datum:
continue
if target_slug not in cl_datum[input_slug]:
continue
if cl_datum[input_slug][target_slug] is None:
# We used ~ in the config, there are no constraints
constraints = []
else:
constraints = cl_datum[input_slug][target_slug]['constraints']
with open(get_path("../data/catalog/%s" % cl_datum['file'])) as f:
json_data = json.load(f)
if 'start' not in cl_datum:
log.error("Invalid configuration: 'start' is missing.")
continue # skip this
if 'format' not in cl_datum:
cl_datum['format'] = CME_DATE_FMT
# log.error("Invalid configuration: 'format' is missing.")
# continue # skip this
start_index = _get_index_of_key(json_data, cl_datum['start'])
if 'stop' not in cl_datum:
stop_index = start_index
else:
stop_index = _get_index_of_key(json_data, cl_datum['stop'])
for json_datum in json_data['data']:
validates_any_constraint = False
if 0 == len(constraints):
validates_any_constraint = True
for constraint in constraints:
validates_constraint = True
for key, possible_values in iter(constraint.items()):
actual_value = json_datum[_get_index_of_key(
json_data, key
)]
if actual_value not in possible_values:
validates_constraint = False
break
if validates_constraint:
validates_any_constraint = True
break
if not validates_any_constraint:
continue
start_time = json_datum[start_index]
stop_time = json_datum[stop_index]
start_time = datetime.datetime.strptime(
start_time, cl_datum['format']
)
stop_time = datetime.datetime.strptime(
stop_time, cl_datum['format']
)
if start_time < started_at:
continue
catalog_layers[config_layer['slug']].append({
'start': start_time.strftime(MOMENT_DATE_FMT),
'stop': stop_time.strftime(MOMENT_DATE_FMT),
})
return catalog_layers
def get_hit_counter():
hit_count_path = get_path("../VISITS")
if isfile(hit_count_path):
hit_count = int(open(hit_count_path).read())
else:
hit_count = 1
return hit_count
def increment_hit_counter():
hit_count_path = get_path("../VISITS")
if isfile(hit_count_path):
hit_count = int(open(hit_count_path).read())
hit_count += 1
else:
hit_count = 1
hit_counter_file = open(hit_count_path, 'w')
hit_counter_file.write(str(hit_count))
hit_counter_file.close()
return hit_count
def update_spacepy():
"""
Importing pycdf will fail if the toolbox is not up to date.
"""
try:
log.info("Updating spacepy's toolbox…")
import spacepy.toolbox
spacepy.toolbox.update()
except Exception as e:
log.error("Failed to update spacepy : %s." % e)
tpl_global_vars['visits'] = get_hit_counter()
# ROUTING #####################################################################
@app.route('/favicon.ico')
def favicon(): # we want it served from the root, not from static/
return send_from_directory(
join(app.root_path, 'static', 'img'),
'favicon.ico', mimetype='image/vnd.microsoft.icon'
)
@app.route("/")
@app.route("/home.html")
@app.route("/index.html")
def home():
increment_hit_counter()
parameters = PARAMETERS.values()
parameters = sorted(parameters, key=lambda x: x['position'])
input_slug = get_input_slug_from_query()
targets = [t for t in config['targets'] if not t['locked']]
started_at, stopped_at = get_interval_from_query()
for i, target in enumerate(targets):
targets[i]['catalog_layers'] = get_catalog_layers(
input_slug, target['slug'], started_at, stopped_at
)
return render_view('home.html.jinja2', {
# 'targets': config['targets'],
'targets': targets,
'parameters': parameters,
'input_slug': input_slug,
'started_at': started_at,
'stopped_at': stopped_at,
'planets': [s for s in config['targets'] if s['type'] == 'planet'],
'probes': [s for s in config['targets'] if s['type'] == 'probe'],
'comets': [s for s in config['targets'] if s['type'] == 'comet'],
'visits': get_hit_counter(),
})
@app.route("/about.html")
def about():
import uuid
increment_hit_counter()
return render_view('about.html.jinja2', {
'authors_emails': [a['mail'] for a in config['authors']],
'uuid4': str(uuid.uuid4())[0:3],
'visits': get_hit_counter(),
})
@app.route("/help.html")
def help():
return render_view('help.html.jinja2', {
'visits': get_hit_counter(),
})
@app.route("/<target>_<inp>_<started_at>_<stopped_at>.csv")
def download_target_csv(target, inp, started_at, stopped_at):
"""
Grab data and orbit data for the specified `target`,
rearrange it and return it as a CSV file.
`started_at` and `stopped_at` should be UTC.
`inp` is the input slug, omni or sa or sb.
"""
check_target_config(target)
try:
started_at = datetime.datetime.strptime(started_at, FILE_DATE_FMT)
except:
abort(400, "Invalid started_at parameter : '%s'." % started_at)
try:
stopped_at = datetime.datetime.strptime(stopped_at, FILE_DATE_FMT)
except:
abort(400, "Invalid stopped_at parameter : '%s'." % stopped_at)
input_slug = get_input_slug_from_query(inp=inp)
filename = "%s_%s_%s_%s.csv" % (target, input_slug,
started_at.strftime(FILE_DATE_FMT),
stopped_at.strftime(FILE_DATE_FMT))
local_csv_file = join(CACHE_DIR, filename)
generate_csv_file_if_needed(
target_slug=target, input_slug=input_slug,
started_at=started_at, stopped_at=stopped_at
)
if not isfile(local_csv_file):
abort(500, "Could not cache CSV file at '%s'." % local_csv_file)
return send_from_directory(CACHE_DIR, filename)
@app.route("/<targets>_<inp>_<started_at>_<stopped_at>.tar.gz")
def download_targets_tarball(targets, inp, started_at, stopped_at):
"""
Grab data and orbit data for each of the specified `targets`,
in their own CSV file, and make a tarball of them.
`started_at` and `stopped_at` should be UTC strings.
Note: we do not use this route anymore, but let's keep it shelved for now.
targets: string list of targets' slugs, separated by `-`.
"""
separator = '-'
targets = targets.split(separator)
targets.sorty()
targets_configs = []
for target in targets:
if not target:
abort(400, "Invalid targets format : `%s`." % targets)
targets_configs.append(get_target_config(target))
if 0 == len(targets_configs):
abort(400, "No valid targets specified. What are you doing?")
try:
started_at = datetime.datetime.strptime(started_at, FILE_DATE_FMT)
except:
abort(400, "Invalid started_at parameter : '%s'." % started_at)
try:
stopped_at = datetime.datetime.strptime(stopped_at, FILE_DATE_FMT)
except:
abort(400, "Invalid stopped_at parameter : '%s'." % stopped_at)
sta = started_at.strftime(FILE_DATE_FMT)
sto = stopped_at.strftime(FILE_DATE_FMT)
input_slug = get_input_slug_from_query(inp=inp)
gzip_filename = "%s_%s_%s_%s.tar.gz" % (
separator.join(targets), input_slug, sta, sto
)
local_gzip_file = join(CACHE_DIR, gzip_filename)
if not isfile(local_gzip_file):
log.debug("Creating the CSV files for the tarball...")
for target_config in targets_configs:
filename = "%s_%s_%s_%s.csv" % (
target_config['slug'], input_slug, sta, sto
)
local_csv_file = join(CACHE_DIR, filename)
if not isfile(local_csv_file):
with open(local_csv_file, mode="w+") as f:
f.write(generate_csv_contents(
target_slug=target_config['slug'],
started_at=started_at,
stopped_at=stopped_at,
input_slug=input_slug
))
log.debug("Creating the tarball '%s'..." % local_gzip_file)
with tarfile.open(local_gzip_file, "w:gz") as tar:
for target_config in targets_configs:
filename = "%s_%s_%s_%s.csv" % (
target_config['slug'], input_slug, sta, sto
)
local_csv_file = join(CACHE_DIR, filename)
tar.add(local_csv_file, arcname=filename)
if not isfile(local_gzip_file):
abort(500, "No tarball to serve. Looked at '%s'." % local_gzip_file)
return send_from_directory(CACHE_DIR, gzip_filename)
@app.route("/<targets>_<inp>_<params>_<started_at>_<stopped_at>.nc")
def download_targets_netcdf(targets, inp, params, started_at, stopped_at):
"""
NOTE : This is not used anymore.
Grab data and orbit data for the specified `target`,
rearrange it and return it as a NetCDF file.
`started_at` and `stopped_at` are expected to be UTC.
targets: string list of targets' slugs, separated by `-`.
params: string list of targets' parameters, separated by `-`.
"""
separator = '-' # /!\ this char should never be in target's slugs
targets = targets.split(separator)
targets.sorty()
targets_configs = []
for target in targets:
if not target:
abort(400, "Invalid targets format : `%s`." % targets)
targets_configs.append(get_target_config(target))
if 0 == len(targets_configs):
abort(400, "No valid targets specified. What are you doing?")
params = params.split(separator)
params.sorty()
if 0 == len(params):
abort(400, "No valid parameters specified. What are you doing?")
if not is_list_in_list(params, PARAMETERS.keys()):
abort(400, "Some parameters are not recognized in '%s'." % str(params))
date_fmt = FILE_DATE_FMT
try:
started_at = datetime.datetime.strptime(started_at, date_fmt)
except:
abort(400, "Invalid started_at parameter : '%s'." % started_at)
try:
stopped_at = datetime.datetime.strptime(stopped_at, date_fmt)
except:
abort(400, "Invalid stopped_at parameter : '%s'." % stopped_at)
sta = started_at.strftime(date_fmt)
sto = stopped_at.strftime(date_fmt)
input_slug = get_input_slug_from_query(inp=inp)
nc_filename = "%s_%s_%s_%s_%s.nc" % (
separator.join(targets), separator.join(params), input_slug, sta, sto
)
nc_path = join(CACHE_DIR, nc_filename)
if not isfile(nc_path):
log.debug("Creating the NetCDF file '%s'..." % nc_filename)
nc_handle = Dataset(nc_path, "w", format="NETCDF4")
try:
nc_handle.description = "Model and orbit data for targets" # todo
nc_handle.history = "Created " + time.ctime(time.time())
nc_handle.source = "Heliopropa (CDDP)"
available_params = list(PROPERTIES)
for target in targets_configs:
target_slug = target['slug']
log.debug("Adding group '%s' to the NetCDF..." % target_slug)
nc_group = nc_handle.createGroup(target_slug)
data = get_data_for_target(
target_config=target, input_slug=input_slug,
started_at=started_at, stopped_at=stopped_at
)
dkeys = sorted(data)
dimension = 'dim_' + target_slug
nc_handle.createDimension(dimension, len(dkeys))
# TIME #
nc_time = nc_group.createVariable('time', 'i8', (dimension,))
nc_time.units = "hours since 1970-01-01 00:00:00"
nc_time.calendar = "standard"
times = []
for dkey in dkeys:
time_as_string = data[dkey][0][:-6] # remove +00:00 tail
date = datetime.datetime.strptime(time_as_string, date_fmt)
times.append(date2num(
date, units=nc_time.units, calendar=nc_time.calendar
))
nc_time[:] = times
# SELECTED PARAMETERS #
nc_vars = []
indices = []
for param in params:
indices.append(available_params.index(param))
nc_var = nc_group.createVariable(param, 'f8', (dimension,))
nc_var.units = PARAMETERS[param]['units']
nc_vars.append(nc_var)
for i, nc_var in enumerate(nc_vars):
index = indices[i]
values = []
for dkey in dkeys:
dval = data[dkey]
values.append(dval[index])
nc_var[:] = values
# ORBIT #
nc_x = nc_group.createVariable('xhee', 'f8', (dimension,))
nc_x.units = 'Au'
nc_y = nc_group.createVariable('yhee', 'f8', (dimension,))
nc_y.units = 'Au'
values_x = []
values_y = []
index_x = available_params.index('xhee')
index_y = available_params.index('yhee')
for dkey in dkeys:
dval = data[dkey]
values_x.append(dval[index_x])
values_y.append(dval[index_y])
nc_x[:] = values_x
nc_y[:] = values_y
log.debug("Writing NetCDF '%s'..." % nc_filename)
except Exception:
log.error("Failed to generate NetCDF '%s'." % nc_filename)
raise
finally:
nc_handle.close()
if not isfile(nc_path):
abort(500, "No NetCDF to serve. Looked at '%s'." % nc_path)
return send_from_directory(CACHE_DIR, nc_filename)
@app.route("/<targets>_<inp>_<started_at>_<stopped_at>.cdf")
def download_targets_cdf(targets, inp, started_at, stopped_at):
"""
Grab data and orbit data for the specified `target`,
rearrange it and return it as a CDF file.
`started_at` and `stopped_at` are expected to be UTC.
targets: string list of targets' slugs, separated by `-`.
params: string list of targets' parameters, separated by `-`.
"""
separator = '-' # /!\ this char should never be in target's slugs
targets = targets.split(separator)
targets.sorty()
targets_configs = []
for target in targets:
if not target:
abort(400, "Invalid targets format : `%s`." % targets)
targets_configs.append(get_target_config(target))
if 0 == len(targets_configs):
abort(400, "No valid targets specified. What are you doing?")
params = PARAMETERS.keys()
try:
started_at = datetime.datetime.strptime(started_at, FILE_DATE_FMT)
except:
abort(400, "Invalid started_at parameter : '%s'." % started_at)
try:
stopped_at = datetime.datetime.strptime(stopped_at, FILE_DATE_FMT)
except:
abort(400, "Invalid stopped_at parameter : '%s'." % stopped_at)
sta = started_at.strftime(FILE_DATE_FMT)
sto = stopped_at.strftime(FILE_DATE_FMT)
input_slug = get_input_slug_from_query(inp=inp)
cdf_filename = "%s_%s_%s_%s.cdf" % (
separator.join(targets), input_slug, sta, sto
)
cdf_path = join(CACHE_DIR, cdf_filename)
if not isfile(cdf_path):
log.debug("Creating the CDF file '%s'..." % cdf_filename)
try:
from spacepy import pycdf
except ImportError:
# If spacepy's toolbox is not up-to-date, importing will fail.
# So, let's update and try again !
update_spacepy()
try:
from spacepy import pycdf
except ImportError as e:
log.error("Failed to import pycdf from spacepy : %s" % e)
raise
except Exception as e:
log.error("Failed to import pycdf from spacepy : %s" % e)
raise
try:
cdf_handle = pycdf.CDF(cdf_path, masterpath='')
targets_names = ', '.join([t['name'] for t in targets_configs])
description = "Model and orbit data for %s." % targets_names
cdf_handle.attrs['Description'] = description
cdf_handle.attrs['Author'] = "Heliopropa.irap.omp.eu (CDPP)"
cdf_handle.attrs['Created'] = str(time.ctime(time.time()))
# fixme: Try changing the name from 00 to something relevant
cdf_handle.attrs['Title'] = "Heliopropa - %s" % targets_names
#######
available_params = list(PROPERTIES)
for target in targets_configs:
target_slug = target['slug']
data = get_data_for_target(
target_config=target, input_slug=input_slug,
started_at=started_at, stopped_at=stopped_at
)
dkeys = sorted(data)
values = []
for dkey in dkeys:
time_str = data[dkey][0][:-6] # remove +00:00 tail
date = datetime.datetime.strptime(time_str, FILE_DATE_FMT)
values.append(date)
kt = "%s_time" % target_slug
cdf_handle.new(kt, type=pycdf.const.CDF_EPOCH)
cdf_handle[kt] = values
# cdf_handle[kt].attrs['FIELDNAM'] = "Time since 0 A.D"
for param in params:
k = "%s_%s" % (target_slug, param)
values = []
i = available_params.index(param)
has_nones = False
for dkey in dkeys:
value = data[dkey][i]
if value is None:
has_nones = True
values.append(value)
if has_nones:
# PyCDF hates it when there are Nones.
# Since we don't know what value to set instead,
# let's skip the param altogether.
continue
cdf_handle[k] = values
attrs = cdf_handle[k].attrs
attrs['UNITS'] = PARAMETERS[param]['units']
attrs['LABLAXIS'] = PARAMETERS[param]['name']
attrs['FIELDNAM'] = PARAMETERS[param]['title']
if values:
attrs['VALIDMIN'] = min(values)
attrs['VALIDMAX'] = max(values)
kx = "%s_xhee" % target_slug
ky = "%s_yhee" % target_slug
values_xhee = []
values_yhee = []
index_x = available_params.index('xhee')
index_y = available_params.index('yhee')
for dkey in dkeys:
value_xhee = data[dkey][index_x]
value_yhee = data[dkey][index_y]
# We've got some `None`s cropping up in the data sometimes.
# PyCDF does not digest Nones at all.
# While they solve this upstream, let's make an ugly fix!
if (value_xhee is not None) and (value_yhee is not None):
values_xhee.append(value_xhee)
values_yhee.append(value_yhee)
else:
values_xhee.append(0)
values_yhee.append(0)
log.warning("Orbit data for %s has NaNs." % target_slug)
cdf_handle[kx] = values_xhee
cdf_handle[ky] = values_yhee
cdf_handle[kx].attrs['UNITS'] = 'Au'
cdf_handle[ky].attrs['UNITS'] = 'Au'
log.debug("Writing CDF '%s'..." % cdf_filename)
cdf_handle.close()
log.debug("Wrote CDF '%s'." % cdf_filename)
except Exception as e:
log.error("Failed to generate CDF '%s'." % cdf_filename)
if isfile(cdf_path):
removefile(cdf_path)
raise
if not isfile(cdf_path):
abort(500, "No CDF to serve. Looked at '%s'." % cdf_path)
return send_from_directory(CACHE_DIR, cdf_filename)
@app.route("/<target>_auroral_catalog.csv")
def download_auroral_catalog_csv(target):
tc = validate_tap_target_config(target)
log.debug("Requesting auroral emissions CSV for %s..." % tc['name'])
filename = "%s_auroral_catalog.csv" % (target)
local_csv_file = join(CACHE_DIR, filename)
target_name = tc['tap']['target_name']
emissions = retrieve_auroral_emissions(target_name)
# Be careful with regexes in python 2 ; best always use the ^$
thumbnail_url_filter = re.compile("^.*proc(?:_small)?\\.(?:jpe?g|png|webp|gif|bmp|tiff)$")
# Filter the emissions
def _keep_emission(emission):
ok = thumbnail_url_filter.match(emission['thumbnail_url'])
return bool(ok)
emissions = [e for e in emissions if _keep_emission(e)]
header = ('time_min', 'time_max', 'thumbnail_url', 'external_link')
if len(emissions):
header = emissions[0].keys()
si = StringIO()
cw = csv_dict_writer(si, fieldnames=header)
cw.writeheader()
# 'time_min', 'time_max', 'thumbnail_url', 'external_link'
# cw.writerow(head)
log.debug("Writing auroral emissions CSV for %s..." % tc['name'])
cw.writerows(emissions)
log.info("Generated auroral emissions CSV contents for %s." % tc['name'])
return si.getvalue()
# if not isfile(local_csv_file):
# abort(500, "Could not cache CSV file at '%s'." % local_csv_file)
#
# return send_from_directory(CACHE_DIR, filename)
@app.route("/test/auroral/<target>")
def test_auroral_emissions(target):
tc = validate_tap_target_config(target)
target_name = tc['tap']['target_name']
retrieved = retrieve_auroral_emissions(target_name)
return "%d results:\n%s" % (len(retrieved), str(retrieved))
# API #########################################################################
@app.route("/cache/clear")
def cache_clear():
"""
Removes all files from the cache.
Note: It also removes the .gitkeep file. Not a problem for prod.
"""
removed_files = remove_all_files(CACHE_DIR)
count = len(removed_files)
return "Cache cleared! Removed %d file%s." \
% (count, 's' if count != 1 else '')
@app.route("/cache/cleanup")
def cache_cleanup():
"""
Removes all files from the cache that are older than roughly one month.
Note: It also removes the .gitkeep file. Maybe it should not, but hey.
"""
a_month_ago = datetime.datetime.now() - datetime.timedelta(days=32)
removed_files = remove_files_created_before(a_month_ago, CACHE_DIR)
count = len(removed_files)
return "Cache cleaned! Removed %d old file%s." \
% (count, 's' if count != 1 else '')
@app.route("/cache/warmup")
def cache_warmup():
"""
Warms up the cache for the current day.
"""
warmup_started_at = datetime.datetime.now()
sta, sto = get_interval_from_query()
inp = config['defaults']['input_slug'] # default input, maybe warm them all up ?
targets = get_active_targets()
targets_slugs = [target['slug'] for target in targets]
targets_slugs.sorty()
update_spacepy()
for target in targets:
download_target_csv(target['slug'], inp, sta, sto)
download_targets_cdf('-'.join(targets_slugs), inp, sta, sto)
warmup_ended_at = datetime.datetime.now()
warmup_timedelta = warmup_ended_at - warmup_started_at
return "Done in %s." % str(warmup_timedelta)
@app.route("/log")
@app.route("/log.html")
def log_show():
with open(LOG_FILE, 'r') as f:
contents = f.read()
return "<pre>" + contents + "</pre>"
@app.route("/log/clear")
def log_clear():
with open(LOG_FILE, 'w') as f:
f.truncate()
return "Log cleared successfully."
# DEV TOOLS ###################################################################
# @app.route("/inspect")
# def analyze_cdf():
# """
# For debug purposes.
# """
# cdf_to_inspect = get_path("../res/dummy.nc")
# cdf_to_inspect = get_path("../res/dummy_jupiter_coordinates.nc")
#
# si = StringIO()
# cw = csv.DictWriter(si, fieldnames=['Name', 'Shape', 'Length'])
# cw.writeheader()
#
# # Time, StartTime, StopTime, V, B, N, T, Delta_angle, P_dyn, QualityFlag
# cdf_handle = Dataset(cdf_to_inspect, "r", format="NETCDF4")
# for variable in cdf_handle.variables:
# v = cdf_handle.variables[variable]
# cw.writerow({
# 'Name': variable,
# 'Shape': v.shape,
# 'Length': v.size,
# })
# cdf_handle.close()
#
# return si.getvalue()
# MAIN ########################################################################
if __name__ == "__main__":
# Debug mode is on, as the production server does not use this but run.wsgi
extra_files = [get_path('../config.yml')]
app.run(debug=True, extra_files=extra_files)