ncfileop.c
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/*=====================================================================
* DD SYSTEM base package
* DD_Server library
* ncfileop.c
* V.6.7
* Last revision:
* Oct 24, 2002 New calculation of the maximum record size V 4.1
* work with NC files is now in file ncfileop.c
* Nov 19, 2004 Bug in the cach operation.
* Aug 16, 2005 Cach improved
* Mar 15, 2007 V.4.7 Some errors with cash
* Jul 10, 2007 V.5.0 According to Server protocol 4.5.1 Call external database if need.
* If "times" has "NODATA" string as name of the file, return "NOTIME"
* Sep 22, 2007 V.6.0 New approach. It tries to get new data between two files
* Sep 25, 2007 V.6.1 Variable Minimal Gap
* May 06, 2008 V.6.2 Fedorov, Max Records number processing
* May 12, 2008 V.6.3 Fedorov, In Max Records error in malloc sizeof(int *)!!! important for 64
* May 15, 2008 V.6.4 Fedorov, NoData interval processing. Just go to the next correct data interval.
* Apr 08, 2009 V.6.5 Fedorov, Unziped files can be touched by groupe
* Apr 14, 2009 V.6.6 Fedorov, nc_sync
* Feb 02, 2010 V.6.7 Lena, wait to remove an old file in the cache
*======================================================================*/
#include <netcdf.h>
#include "DD.h"
#include "DD_comm.h"
/*------------------ GLOBAL VARIABLES --------------------------*/
extern int Verbose;
/*=============================================================
* CloseOldFile
*===========================================================*/
int CloseOldFile(DD_Var_t *D)
{
size_t CashStart[2] = {0L,0L};
size_t CashCount[2] = {1L,MAXFILENAME};
int status;
if(D->Maxnc_rec > 0)
{
status = nc_close(D->ncID);
if(status < 0)
{
D->LastFileStatus = DATAFILEERR;
if(Verbose) fprintf(stderr,"CloseOldFile: file %s, error while closed\n",&(D->Cash.names[D->CurrCushN][0]),D->CurrCushN);
return DATAFILEERR;
}
if(Verbose) fprintf(stderr,"CloseOldFile: file %s, %d closed\n",&(D->Cash.names[D->CurrCushN][0]),D->CurrCushN);
D->CurrCushN = -1;
D->Maxnc_rec = 0;
}
else if(Verbose) fprintf(stderr,"CloseOldFile: Nothing To close\n");
return 1;
}
/*##############################################################*/
/*-----------------------SETNEWFILE-----------------------------*/
/*##############################################################*/
int SetNewFile(DD_Var_t *D, int N)
/*
* Function tries to get new data for the gap beetween files, or just
* open a new data file according to offset N referring to current position in the times file.
* The current position changed if file is succesefully open.
* Return values:
* OK
* OUTOFTIME - next interval exceeeds GlobalStart/Stop
* TIMEINEMPTY - next interval marked as "NODATA"
* TRYAGAIN - the VI is blocked while new data is arriving
* WAITEXTCALL - new data is requested
* CACHTOOREC - now free space in the CACH
* CHACHERR - unrecovable error in CACH
* DATAFILEERR - unrecovable error in data file
*----------------------------------------------------------------
* At the entry we are assuming that VI is not locked!
*/
{
static char TimeDimName[] = "Time";
static size_t CashStart[2] = {0L,0L};
static size_t CashCount[2] = {1L,MAXFILENAME};
static size_t TimeCount[2] = {1,TIMELENGTH};
char Name[MAXFILENAME]; /* Name of data nc file */
char FullName[PATHLENGTH]; /* Full name of nc file */
char StartTime[TIMELENGTH];
char StopTime[TIMELENGTH];
static int NameID,TimeDimID; /* NC variables ID for Times file */
static size_t start[2] = {0,0}; /* NV start array */
static size_t FileCount[2] = {1,MAXFILENAME}; /* NC count array for Times file */
static size_t DimArray[NC_MAX_DIMS]; /* NC_MAX_DIMS is in netcdf.h */
static int DimIDArray[NC_MAX_DIMS];
size_t TestNumber; /* To test the new file number */
int FileNumber, Find, OldestNumber, NewAttempt;
char command[300];
int dltt;
int status;
time_t CurrentTime;
double FirstTime, LastTime;
int More;
/*--------------- Calculate the next file to open ---------------*/
TestNumber = D->TimeRecNumber + N;
if(Verbose) fprintf(stderr,"SetNewFile(): Record %d\n",TestNumber);
D->TimeRecNumber = TestNumber;
start[0] = TestNumber;
/*----------------------------------------------------------------*
* Some test and call external archive we have to make only if N > 0
* Otherwise we just reopen existing file
*----------------------------------------------------------------*/
if(N > 0)
{
if(TestNumber > D->RValidMax) /* Out of existing data files */
{
if(Verbose) fprintf(stderr,"SetNewFile(): TestNumber %d exides D->RValidMax %d\n",TestNumber,D->RValidMax);
if(D->ExtCallAllowed)
{
More = 1;
while(More)
{
switch(status = ExtDataRequest(D, D->CDTime+D->MinGap))
{
case OK: return WAITEXTCALL;
case NODATAATTIME: /* The last files in the data base are only NODATA, let us try again with StopTime of TestNumber */
start[0] = TestNumber;
status = nc_get_vara_text(D->tmID, D->StopID,start,TimeCount,StopTime);
D->CDTime = DD_Time2Double(StopTime) + 0.001;
if(Verbose) fprintf(stderr,"SetNewFile(): We found no data, Let us try another CDTime = %s\n",Double2DD_Time(D->CDTime));
More = 1;
break;
case GAPISSMALL: return TIMEINEMPTY; break;
case OUTOFTIME: return OUTOFTIME; break;
default: return DATAFILEERR;
}
}
} else return OUTOFTIME;
}
}
/*--------------- Get File Name and start Time ---------------------*/
status = nc_get_vara_text(D->tmID,D->NameID,start,FileCount,Name);
status = nc_get_vara_text(D->tmID, D->StartID,start,TimeCount,StartTime);
if(status != NC_NOERR)
{
if(Verbose) fprintf(stderr,"SetNewFile(): Get File Name and StartTime %s\n",nc_strerror(status));
D->LastFileStatus = DATAFILEERR;
return DATAFILEERR;
}
FirstTime = DD_Time2Double(StartTime);
if(N > 0)
{
if(strncmp(Name,"NODATA",6) == 0) /* Next record marked as NODATA */
{
if(D->ExtCallAllowed && (FirstTime - D->CDTime > D->MinGap)) /* Try to fill the gap between the data
* and NODATA segment if there is enough gap
*/
{
if(Verbose) fprintf(stderr,"SetNewFile(): There is a gap %d\n",FirstTime - D->CDTime);
switch(status = ExtDataRequest(D, D->CDTime+D->MinGap))
{
case OK: return WAITEXTCALL;
case NODATAATTIME:
case GAPISSMALL: return TIMEINEMPTY; break;
case OUTOFTIME: return OUTOFTIME; break;
default: return DATAFILEERR;
}
}
else /* Gap to NODATA interval is too small and we wiil try next time interval */
{
if(Verbose) fprintf(stderr,"SetNewFile(): Next File is NODATA, try file %d\n",++TestNumber);
status = nc_get_vara_text(D->tmID, D->StopID,start,TimeCount,StopTime);
D->CDTime = DD_Time2Double(StopTime);
switch( status = SetNewFile(D,1) )
{
case OK: return OK;
case WAITEXTCALL: return WAITEXTCALL;
case TIMEINEMPTY: return TIMEINEMPTY;
case OUTOFTIME: return OUTOFTIME;
case CACHERR: return CACHERR;
default: return DATAFILEERR;
}
}
}
else /* Next record is valid */
{
// sleep(40);
if(D->ExtCallAllowed && ((FirstTime - D->CDTime) > D->MinGap))
{
if(Verbose) fprintf(stderr,"SetNewFile(): File OK, but there is a gap %d %d\n",FirstTime - D->CDTime, D->MinGap);
switch(status = ExtDataRequest(D, D->CDTime+D->MinGap))
{
case OK: return WAITEXTCALL;
case NODATAATTIME:
case GAPISSMALL: return TIMEINEMPTY; break;
case OUTOFTIME: return OUTOFTIME; break;
default: return DATAFILEERR;
}
} /* else just continue */
}
}
/*-------------- refresh the Cache table ---------------------------*/
status = nc_sync(D->Cash.ID);
if(status != NC_NOERR)
{
if(Verbose) fprintf(stderr,"SetNewFile(): Cache Synchro: %s\n",nc_strerror(status));
return CACHERR;
}
for(CashStart[0] = 0; CashStart[0] < CASHLEN; CashStart[0]++)
{
status = nc_get_vara_text(D->Cash.ID, D->Cash.nameID,CashStart,CashCount,D->Cash.names[CashStart[0]]);
if(status != NC_NOERR)
{
if(Verbose) fprintf(stderr,"SetNewFile(): Cache Names: %s\n",nc_strerror(status));
D->LastFileStatus = CACHERR;
return CACHERR;
}
status = nc_get_vara_long(D->Cash.ID, D->Cash.timeID,CashStart,CashCount,&(D->Cash.times[CashStart[0]]));
if(status != NC_NOERR)
{
if(Verbose) fprintf(stderr,"SetNewFile(): Cache Times %s\n",nc_strerror(status));
D->LastFileStatus = CACHERR;
return CACHERR;
}
}
/*----------- Close the old file ----------------------*/
if((status = CloseOldFile(D)) < 0) return DATAFILEERR;
strcpy(FullName,D->path);
strcpy(FullName+strlen(D->path), Name);
// if(Verbose) fprintf(stderr,"SetNewFile(): New file to open: %s\n",FullName);
NewAttempt = 0;
while (NewAttempt < 3)
{
/*----- Search the new requested file in the cache and the oldest file ----------*/
FileNumber = 0;
CurrentTime = time(NULL); Find = 0; OldestNumber = -1;
while((FileNumber < CASHLEN) && // Cache is finished
((Find = strcmp(&(D->Cash.names[FileNumber][0]),Name)) != 0) && // File is already in the Cache
(D->Cash.names[FileNumber][0] != ' ')) // There is empty space
{
if((D->Cash.times[FileNumber] < (CurrentTime - FILEACCMARG) ) && (OldestNumber == -1)) OldestNumber = FileNumber;
dltt = (int)(D->Cash.times[OldestNumber] - D->Cash.times[FileNumber]);
if(dltt > 0) OldestNumber = FileNumber;
FileNumber++;
}
/* ====================================================
* Sometimes it is possible, that:
* 1) No corresponding file in the cache (Find != 0)
* 2) The oldest file is not found (OldestNumber == -1)
* 3) cach is full (FileNumber == CASHLEN)
* Then we need to repeat the search after one sec delay
*==================================================== */
if((Find != 0) && (FileNumber == CASHLEN) && (OldestNumber == -1))
{
NewAttempt++;
sleep((unsigned )(FILEACCMARG));
if (Verbose)
fprintf(stderr,"Waiting %d secs to get the Oldest File\n", FILEACCMARG);
} else NewAttempt = 3;
}
//---------- Parsing resultat of search -------------
// if(Verbose)
// {
// if(OldestNumber > -1) fprintf(stderr,"SetNewFile(): Search: Is Oldest File %d %d %d\n", OldestNumber,D->Cash.times[OldestNumber],CurrentTime);
// else fprintf(stderr,"SetNewFile(): Search: No Oldest File %d %d\n", OldestNumber,CurrentTime);
// }
if(Find != 0)
/*---------------- No request file in the CACHE ----------------------*/
{
if(FileNumber < CASHLEN)
{
if(D->Cash.names[FileNumber][0] == ' ') /* There is empty space in the table */
{
strcpy(command, "gunzip -c ");
strcat(command, FullName);
strcat(command, ".gz > ");
strcat(command, FullName);
system(command); /* File is unzipped */
sprintf(command, "chmod g+w %s\0",FullName);
system(command); /* File is unzipped */
strcpy(&(D->Cash.names[FileNumber][0]),Name);
D->Cash.times[FileNumber] = CurrentTime;
CashStart[0] = FileNumber;
D->CurrCushN = FileNumber;
}
else
{
D->LastFileStatus = CACHERR;
return CACHERR; /* Unrecoverable error */
}
}
else /* No empty space. It is necessury to remove one file */
{
if (OldestNumber > -1) //------ Oldest file is found -------
{
strcpy(command, "gunzip -c ");
strcat(command, FullName);
strcat(command, ".gz > ");
strcat(command, FullName);
system(command); /* File is unzipped */
sprintf(command, "chmod g+w %s\0",FullName);
system(command); /* File is unzipped */
strcpy(command, "rm ");
strcat(command,D->path);
strcat(command,&(D->Cash.names[OldestNumber][0]));
strcat(command, " &");
system(command); /* Old file removed */
strcpy(&(D->Cash.names[OldestNumber][0]),Name);
D->Cash.times[OldestNumber] = CurrentTime;
CashStart[0] = OldestNumber;
D->CurrCushN = OldestNumber;
}
else {
if(Verbose) fprintf(stderr,"SetNewFile(): return CACHTOOREC\n");
D->LastFileStatus = CACHTOOREC;
D->TimeRecNumber -= N;
return CACHTOOREC; //----- Say client that all files are too new
}
}
/*------------ The place for new cache is found --------------*/
status = nc_put_vara_text(D->Cash.ID, D->Cash.nameID,CashStart,CashCount,&(D->Cash.names[CashStart[0]][0]));
status = nc_put_vara_long(D->Cash.ID, D->Cash.timeID,CashStart,CashCount,&(D->Cash.times[CashStart[0]]));
if(status != NC_NOERR)
{
if(Verbose) fprintf(stderr,"SetNewFile(): Write Name and Time to cash: %s\n",nc_strerror(status));
D->LastFileStatus = CACHERR;
return CACHERR;
}
status = nc_sync(D->Cash.ID);
}
//------------------ There is FILE already in the CACHE --------------
else /*------- The requested file is already in the cache just refresh the time */
{
CashStart[0] = FileNumber;
D->Cash.times[FileNumber] = CurrentTime; /* refresh the time */
D->CurrCushN = FileNumber;
status = nc_put_vara_long(D->Cash.ID, D->Cash.timeID,CashStart,CashCount,&(D->Cash.times[CashStart[0]]));
if(status != NC_NOERR)
{
if(Verbose) fprintf(stderr,"SetNewFile(): File In Cache: %s\n",nc_strerror(status));
D->LastFileStatus = CACHERR;
return CACHERR;
}
status = nc_sync(D->Cash.ID);
}
// if(Verbose) fprintf(stderr,"SetNewFile(): file %s, %d to be open\n",FullName,D->CurrCushN);
/*--------------- CACHE refreshed and requested file is unzipped ------------------------*/
/*----------------- Open requested file -----------------------------------------------*/
status = nc_open(FullName,NC_NOWRITE,&(D->ncID));
if(status != NC_NOERR)
{
if(Verbose) fprintf(stderr,"SetNewFile(): Error while File Open: %s\n",nc_strerror(status));
D->LastFileStatus =DATAFILEERR ;
return DATAFILEERR;
}
if(Verbose) fprintf(stderr,"SetNewFile(): %s is open\n",FullName);
/* Recover time dimension */
status = nc_inq_dimid(D->ncID,TimeDimName,&TimeDimID);
if(status != NC_NOERR)
{
if(Verbose) fprintf(stderr,"SetNewFile(): Get Time Dim: %s\n",nc_strerror(status));
D->LastFileStatus = DATAFILEERR;
return DATAFILEERR;
}
status = nc_inq_dimlen(D->ncID,TimeDimID,&(D->Maxnc_rec));
if(status != NC_NOERR)
{
if(Verbose) fprintf(stderr,"SetNewFile: GetFile Length: %s\n",nc_strerror(status));
D->LastFileStatus = DATAFILEERR;
return DATAFILEERR;
}
/* Setup current position in the new open file */
if(N > 0) D->nc_rec = 0;
if(N < 0) D->nc_rec = D->Maxnc_rec-1;
D->LastFileStatus = OK;
return OK;
}
/*------------------------------------------------------------------------------------*/
/*----------------- VarSize -----------------------------------*/
int VarSize(nc_type type)
{
switch(type)
{
case NC_BYTE: return sizeof(char);
case NC_CHAR: return sizeof(char);
case NC_SHORT: return sizeof(short);
case NC_INT: return sizeof(int);
case NC_FLOAT: return sizeof(float);
case NC_DOUBLE: return sizeof(double);
default: return 1;
}
}
/*##############################################################*/
/*----------------------- MaxRecord -----------------------------*/
/*##############################################################*/
size_t MaxRecord(int ncID)
/* ncID - ID of already open NC file */
{
int timedimid; /* ID for dimension "Time" */
int nvars;
int ndims;
int *ndims_arr; /* Array to keep number of dimensions of each variable */
size_t *dimleng_arr; /* Array to keep all length of dimensions */
nc_type *vartype_arr; /* Array to keep all types of variables */
int **dimid_arr; /* array of pointers to arrays of variable dimensions */
int status; /* Error indicator */
int iv, id;
int cvarsize; /* size of variable */
int maxsize; /* maximal size */
int recordsize; /* size by units */
size_t RecordNumber;
/*--- general information -------*/
status = nc_inq_ndims(ncID,&ndims);
status = nc_inq_nvars(ncID,&nvars);
status = nc_inq_unlimdim(ncID, &timedimid); /* What is unlimited dimension ID */
/*---- memory allocation --------*/
dimleng_arr = (size_t *)malloc(ndims * sizeof(size_t));
vartype_arr = (nc_type *)malloc(nvars * sizeof(nc_type));
dimid_arr = (int **)malloc(nvars * sizeof(int *));
ndims_arr = (int *)malloc(nvars * sizeof(int));
/* Length of each dimension */
for(id = 0; id < ndims; id++)
{
if(id == timedimid) dimleng_arr[id] = 1;
else status = nc_inq_dimlen(ncID, id, &(dimleng_arr[id]));
}
/* type and dimension of each variable */
for(iv = 0; iv < nvars; iv++)
{
status = nc_inq_vartype(ncID,iv,&(vartype_arr[iv]));
status = nc_inq_varndims(ncID,iv,&(ndims_arr[iv]));
dimid_arr[iv] = (int *)malloc(ndims_arr[iv]*sizeof(int)); /* memory for dim ID array */
status = nc_inq_vardimid(ncID,iv,dimid_arr[iv]);
}
/* calculation of size of variable and maximum size of variables */
maxsize = 0;
for(iv = 0; iv < nvars; iv++)
{
recordsize = 1;
for(id = 0; id < ndims_arr[iv]; id++)
recordsize *= dimleng_arr[(dimid_arr[iv])[id]];
cvarsize = recordsize * VarSize(vartype_arr[iv]);
if(cvarsize > maxsize) maxsize = cvarsize;
}
/* calculation record number */
RecordNumber = (size_t)(MAXPACKSIZE / maxsize);
if(RecordNumber == 0)
{
if(Verbose) fprintf(stderr,"MaxRecord(%d): Error in calculation of records number,MAXPACKSIZE = %d, maxsize = %d\n",ncID,MAXPACKSIZE,maxsize);
}
/* Free all */
for(iv = 0; iv < nvars; iv++) free(dimid_arr[iv]);
free(ndims_arr);
free(dimid_arr);
free(vartype_arr);
free(dimleng_arr);
return RecordNumber;
}
/*----------------------------------------------------------------------*/