FileWriterCDF.cc 12.5 KB
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283 284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301 302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319 320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337 338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355 356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371 372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389 390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406 407 408 409 410 411 412 413 414 415 416 417 418 419 420 421 422 423 424 425 426 427 428 429 430 431 432 433 434 435 436 437 438 439 440 441 442 443 444 445 446 447 448 449 450 451 452 453 454 455 456 457 458 459 460 461 462 463 464 465 466 467 468 469 470 471 472 473 474 475 476 477 478 479 480 481 482 483 484 485 486 487
/**
 * FileWriterCDF.cc
 *
 *  Created on: 08 oct. 2014
 *      Author: AKKA
 */

#include "FileWriterCDF.hh"
#include "TimeUtil.hh"

#include "FileWriter.hh"
#include "ParamMgr.hh"
#include "DataSetMgr.hh"
#include "InstrumentMgr.hh"
#include "MissionMgr.hh"

#include <sstream>
#include <cstring>
#include <stdlib.h>
#include <boost/cast.hpp>

namespace AMDA {
namespace ParamOutputImpl {
namespace Download {
namespace FileWriter {

#define CDF_TIME_VAR "AMDA_TIME"

using namespace AMDA::Info;

FileWriterCDF::FileWriterCDF(AMDA::Parameters::ParameterManager& pParameterManager) :
		FileWriter(pParameterManager),
		_cdfid(NULL)
{
}

FileWriterCDF::~FileWriterCDF(void)
{
}

std::string FileWriterCDF::getExtension(void)
{
	return "cdf";
}

void FileWriterCDF::closeFile(void)
{
	boost::mutex::scoped_lock scoped_lock(ParameterManager::mutexCDFLib);
	if (_cdfid != NULL)
		CDFcloseCDF(_cdfid);
	_cdfid = NULL;
}

bool FileWriterCDF::createNewFile(std::string filePath)
{
	boost::mutex::scoped_lock scoped_lock(ParameterManager::mutexCDFLib);
	CDFstatus status;

	if (_cdfid != NULL)
	{
		status = CDFcloseCDF(_cdfid);
		if (status != CDF_OK)
			return false;
		_cdfid = NULL;
		_cdfVarMap.clear();
	}

	//remove old file if exist
	remove(filePath.c_str());

	//CDFcreateCDF add automatically ".cdf" extension
	status = CDFcreateCDF((char*)filePath.c_str(),&_cdfid);

	return (status == CDF_OK);
}

bool FileWriterCDF::addParameter(ParamProperties* paramProp, AMDA::Common::ParameterIndexComponentList &indexList,
		FileDataType type, bool isFirstParam, int dim1Size, int dim2Size)
{
	if (isFirstParam)
	{
		if (!createCDFVar(CDF_TIME_VAR, DT_TIME, 1, 1, _cdfVarMap[CDF_TIME_VAR]))
			return false;
	}

	return addCDFParameter(paramProp->getOutputId(), indexList, type, dim1Size, dim2Size);
}

bool FileWriterCDF::addCDFParameter(std::string outputId, AMDA::Common::ParameterIndexComponentList &indexList,
		FileDataType type, int dim1Size, int dim2Size)
{
	std::stringstream paramIdStream;
	paramIdStream << outputId;
	int varDim1Size = dim1Size;
	int varDim2Size = dim2Size;
	if ((type != DT_TIME) && !indexList.empty() && (dim1Size*dim2Size != (int)indexList.size()))
	{
		paramIdStream << "_" << indexList.size();
		varDim1Size = indexList.size();
		varDim2Size = 1;
	}

	std::map<std::string,ParamCDFVar>::iterator it = _cdfVarMap.find(outputId);
	if (it != _cdfVarMap.end())
		return true; //already exist

	return createCDFVar(paramIdStream.str().c_str(), type,
			varDim1Size, varDim2Size, _cdfVarMap[outputId]);
}

bool FileWriterCDF::createCDFVar(const char *name, FileDataType type, long varDim1Size, long varDim2Size,
		ParamCDFVar& cdfVar)
{
	boost::mutex::scoped_lock scoped_lock(ParameterManager::mutexCDFLib);
	if (_cdfid == NULL)
		return false;

	cdfVar.dim1Size = varDim1Size;
	cdfVar.dim2Size = varDim2Size;

	switch (type)
	{
	case DT_FLOAT       :
		cdfVar.type = CDF_FLOAT;
		break;
	case DT_SHORT       :
		cdfVar.type = CDF_INT2;
		break;
	case DT_INT         :
		cdfVar.type = CDF_INT4;
		break;
	case DT_DOUBLE      :
	case DT_LONGDOUBLE  :
		cdfVar.type = CDF_DOUBLE;
		break;
	case DT_LOGICAL :
		cdfVar.type = CDF_UINT2;
		break;
	case DT_TIME :
		cdfVar.type = CDF_EPOCH;
		break;
	case DT_NONE :
		cdfVar.type = CDF_CHAR;
		break;
	default:
		return false;
	}

	cdfVar.recNum = 0;

	long numDims;
	long* dimSizes = NULL;
	long* dimVarys = NULL;

	if (varDim2Size > 1)
	{
		numDims  = 2L;
		dimSizes = new long[2];
		dimSizes[0] = varDim1Size;
		dimSizes[1] = varDim2Size;
		dimVarys = new long[2];
		dimVarys[0] = VARY;
		dimVarys[1] = VARY;
	}
	else
	{
		numDims = (varDim1Size > 1) ? 1L : 0L;
		dimSizes = new long[1];
		dimSizes[0] = varDim1Size;
		dimVarys = new long[1];
		dimVarys[0] = VARY;
	}

	long recVary = {VARY};
	long numElts = 1;

	CDFstatus status;

	status = CDFcreatezVar (_cdfid, name, cdfVar.type, numElts, numDims,
			dimSizes, recVary, dimVarys, &cdfVar.varNum);

	delete[] dimSizes;
	delete[] dimVarys;

	return (status == CDF_OK);
}

bool FileWriterCDF::isInfoInSeparateFile(bool /* onlyOneInterval */, OutputStructure /* outputStructure */)
{
	return false;
}

bool FileWriterCDF::writeError(std::string msg)
{
	addAttribute("AMDA_ERROR", msg, GLOBAL_SCOPE);
	return true;
}



bool FileWriterCDF::writeAMDAInfo(std::string version, std::string createdby, std::string acknowledgement)
{
	addAttribute(AMDA_ABOUT, createdby, GLOBAL_SCOPE);
	addAttribute(AMDA_VERSION, version, GLOBAL_SCOPE);
	addAttribute(AMDA_ACKNOWLEDGEMENT, acknowledgement, GLOBAL_SCOPE);
	return true;
}

bool FileWriterCDF::writeRequestInfo(std::string structure, std::string /* timeFormat */,
		int timeResolution, std::string outputParams, std::string ttName)
{
	addAttribute(REQUEST_STRUCTURE, structure, GLOBAL_SCOPE);
	addAttribute(REQUEST_TIMEFORMAT, "EPOCH", GLOBAL_SCOPE);
	if (timeResolution > 0)
	{
		std::stringstream timeRes;
		timeRes << timeResolution;
		addAttribute(REQUEST_TIMERES, timeRes.str(), GLOBAL_SCOPE);
	}
	addAttribute(REQUEST_OUTPUTPARAMS, outputParams, GLOBAL_SCOPE);
	if (!ttName.empty())
		addAttribute(REQUEST_TTNAME, ttName, GLOBAL_SCOPE);
	return true;
}

bool FileWriterCDF::writeMissionInfo(MissionInfoSPtr missionInfo, long varNum)
{
	if (missionInfo == nullptr)
		return false;

	//write info about mission
	std::vector<std::pair<std::string,std::string>> infoMap = missionInfo->getInfoMap();

	for (auto info : infoMap)
		addAttribute(info.first, info.second, VARIABLE_SCOPE, varNum);
	return true;
}

bool FileWriterCDF::writeInstrumentInfo(InstrumentInfoSPtr instrumentInfo, long varNum)
{
	if (instrumentInfo == nullptr)
		return false;

	//write info about instrument
	std::vector<std::pair<std::string,std::string>> infoMap = instrumentInfo->getInfoMap();

	for (auto info : infoMap)
		addAttribute(info.first, info.second, VARIABLE_SCOPE, varNum);

	MissionInfoSPtr mission	= MissionMgr::getInstance()->getMissionInfoFromId(instrumentInfo->getMissionId());
	writeMissionInfo(mission, varNum);

	return true;
}

bool FileWriterCDF::writeDatasetInfo(DataSetInfoSPtr datasetInfo, long varNum)
{
	if (datasetInfo == nullptr)
		return false;

	//write info about datasetId
	std::vector<std::pair<std::string,std::string>> infoMap = datasetInfo->getInfoMap();

	for (auto info : infoMap)
		addAttribute(info.first, info.second, VARIABLE_SCOPE, varNum);

	InstrumentInfoSPtr instrumentInfo	= InstrumentMgr::getInstance()->getInstrumentInfoFromId(datasetInfo->getInstrumentId());
	writeInstrumentInfo(instrumentInfo, varNum);

	return true;
}

bool FileWriterCDF::writeParameterInfo(ParamInfoSPtr parameterInfo, long varNum)
{
	if (parameterInfo == nullptr)
		return false;

	std::vector<std::pair<std::string,std::string>> infoMap = parameterInfo->getInfoMap(&_parameterManager);

	for (auto info : infoMap)
		addAttribute(info.first, info.second, VARIABLE_SCOPE, varNum);

	DataSetInfoSPtr dataSetInfo = DataSetMgr::getInstance()->getDataSetInfoFromId(parameterInfo->getDatasetId());
	writeDatasetInfo(dataSetInfo, varNum);

	return true;
}

bool FileWriterCDF::writeParamsInfo(ParamPropertiesList& paramPropertiesList, OutputStructure outputStructure,
		std::string currentParamId)
{
	std::set<std::pair<std::string,ParamInfoSPtr>,FileWriter::cmpParamInfoStruct> baseParamsInfoList;
	std::set<std::pair<std::string,ParamInfoSPtr>,FileWriter::cmpParamInfoStruct> derivedParamsInfoList;

	//sort parameters info
	for (auto paramProperties : paramPropertiesList)
	{
		if ((outputStructure == ONE_FILE_PER_PARAMETER_PER_INTERVAL) &&
			(currentParamId != paramProperties->getOutputId()))
			//add info only for current parameter
			continue;
		sortParametersInfoByType(paramProperties->getOutputId(),
				baseParamsInfoList, derivedParamsInfoList);
	}

	//write derived parameters info
	for (auto paramInfo : derivedParamsInfoList)
	{
		std::map<std::string,ParamCDFVar>::iterator it = _cdfVarMap.find(paramInfo.first);
		if (it == _cdfVarMap.end())
		{
			createCDFVar(paramInfo.first.c_str(), DT_NONE, 1, 1,
					_cdfVarMap[paramInfo.first]);
			addAttribute("AMDA_INFO", "Derived parameter description. No data output.", VARIABLE_SCOPE, _cdfVarMap[paramInfo.first].varNum);
		}

		writeParameterInfo(paramInfo.second,_cdfVarMap[paramInfo.first].varNum);
	}

	//write base parameters info
	for (auto paramInfo : baseParamsInfoList)
	{
		std::map<std::string,ParamCDFVar>::iterator it = _cdfVarMap.find(paramInfo.first);
		if (it == _cdfVarMap.end())
		{
			createCDFVar(paramInfo.first.c_str(), DT_NONE, 1, 1,
					_cdfVarMap[paramInfo.first]);
			addAttribute("AMDA_INFO", "Base parameter description. No data output.", VARIABLE_SCOPE, _cdfVarMap[paramInfo.first].varNum);
		}
		writeParameterInfo(paramInfo.second,_cdfVarMap[paramInfo.first].varNum);
	}

	return true;
}

bool FileWriterCDF::writeIntervalInfo(std::string startTime, std::string stopTime)
{
	addAttribute(INTERVAL_START, startTime, GLOBAL_SCOPE);
	addAttribute(INTERVAL_STOP, stopTime, GLOBAL_SCOPE);
	return true;
}

bool FileWriterCDF::addAttribute(std::string attName, std::string attVal,
		long scope, long varNum)
{
	boost::mutex::scoped_lock scoped_lock(ParameterManager::mutexCDFLib);
	if (_cdfid == NULL)
		return false;

	CDFstatus status;

	long attNum = CDFgetAttrNum(_cdfid, (char *)attName.c_str());

	if (attNum < 0)
	{
		status = CDFcreateAttr(_cdfid, (char *)attName.c_str(), scope, &attNum);

		if (status != CDF_OK)
			return false;
	}

	if (scope == GLOBAL_SCOPE)
		status = CDFputAttrgEntry (_cdfid, attNum, 0, CDF_CHAR, attVal.size(), (void *)attVal.c_str());
	else
		status = CDFputAttrzEntry (_cdfid, attNum, varNum, CDF_CHAR, attVal.size(), (void *)attVal.c_str());

	return (status == CDF_OK);
}

bool FileWriterCDF::writeTimeData(std::string /* paramId */, double data, OutputFormatTime /* timeFormat */, bool isFirstParam)
{
	boost::mutex::scoped_lock scoped_lock(ParameterManager::mutexCDFLib);
	if (_cdfid == NULL)
		return false;

	if (!isFirstParam)
		return true;

	std::stringstream isoTime;
	TimeUtil::formatTimeDateInIso(data, isoTime);

	char epString[EPOCH4_STRING_LEN+1];
	memset(&epString,0,sizeof(epString));
	if (!isoTime.str().empty())
		strncpy(epString,isoTime.str().c_str(),EPOCH4_STRING_LEN);

	double epochTime = parseEPOCH4(epString);

	CDFstatus status = CDFputzVarRecordData(_cdfid, _cdfVarMap[CDF_TIME_VAR].varNum,
			_cdfVarMap[CDF_TIME_VAR].recNum, &epochTime);

	++_cdfVarMap[CDF_TIME_VAR].recNum;

	return (status == CDF_OK);
}

bool FileWriterCDF::writeOneData(std::string paramId, int varIndex, void *data)
{
	boost::mutex::scoped_lock scoped_lock(ParameterManager::mutexCDFLib);
	if (_cdfid == NULL)
		return false;

	if (_cdfVarMap[paramId].varNum <= 0)
		return false;

	long indices[2];

	if (_cdfVarMap[paramId].dim2Size > 1)
	{
		indices[0] = varIndex/_cdfVarMap[paramId].dim2Size;
		indices[1] = varIndex%_cdfVarMap[paramId].dim2Size;
	}
	else
		indices[0] = varIndex;

	CDFstatus status = CDFputzVarData(_cdfid, _cdfVarMap[paramId].varNum,
			_cdfVarMap[paramId].recNum, indices, data);

	return (status == CDF_OK);
}

bool FileWriterCDF::writeFloatData(std::string paramId, int varIndex, float data, bool /* precision */)
{
	return writeOneData(paramId, varIndex, &data);
}

bool FileWriterCDF::writeShortData(std::string paramId, int varIndex, short data, bool /* precision */)
{
	return writeOneData(paramId, varIndex, &data);
}

bool FileWriterCDF::writeIntData(std::string paramId, int varIndex, int data, bool /* precision */)
{
	return writeOneData(paramId, varIndex, &data);
}

bool FileWriterCDF::writeDoubleData(std::string paramId, int varIndex, double data, bool /* precision */)
{
	return writeOneData(paramId, varIndex, &data);
}

bool FileWriterCDF::writeLongDoubleData(std::string paramId, int varIndex, long double data, bool /* precision */)
{
	//convert long double to double
	double doubleData = boost::numeric_cast<double>(data);

	return writeOneData(paramId, varIndex, &doubleData);
}

bool FileWriterCDF::writeLogicalData(std::string paramId, int varIndex, AMDA::Parameters::LogicalData data, bool /* precision */)
{
	//convert LogicalData to 2-byte unsigned integer
	unsigned short uShortData;
	switch (data)
	{
	case AMDA::Parameters::LogicalData::False :
		uShortData = 0;
		break;
	case AMDA::Parameters::LogicalData::True :
		uShortData = 1;
		break;
	case AMDA::Parameters::LogicalData::NaN :
		uShortData = 2;
		break;
	default :
		return false;
	}

	return writeOneData(paramId, varIndex, &uShortData);
}

bool FileWriterCDF::goToNextRecord(std::string paramId)
{
	++_cdfVarMap[paramId].recNum;
	return true;
}

bool FileWriterCDF::finalize(bool /* isInfoFile */ )
{
	//nothing to do
	return true;
}

} /* namespace FileWriter */
} /* namespace Download */
} /* namespace ParamOutputImpl */
} /* namespace AMDA */