getVotableFromASCII.php
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<?php
// ------------------------------------------------------------------------------
// A php script which reads an ascii data file and converts it into VOTable file
//
// Usage from command line:
// php asciiURL_to_votableURL.php asciiURL
// asciiURL url of the ascii file
//
// Usage from browser:
// http://impex-fp7.fmi.fi/ws/asciiURL_to_votableURL.php?asciiURL
// asciiURL url of the ascii file
//
// The script returns the url of the created VOTable file.
//
// This script is written for handling ascii data files (from Cluster) provided
// by Vincent Genot. It makes assumptions about the format of data in the ascii
// file so it is probably not suitable for handling other ascii files.
// ------------------------------------------------------------------------------
// -----------------------------------
// Get the URL of the ascii data file
// -----------------------------------
if (isset($_GET['url'])) { // For html calls
$url_ascii = $_GET['url'];
} else { // For command line
if (!isset($argv[1])) die("No url given" . "\n");
$url_ascii = $argv[1];
}
// --------------------------------
// Read the ascii file into memory
// --------------------------------
$ch = curl_init($url_ascii);
curl_setopt($ch,CURLOPT_USERAGENT,'Mozilla/5.0 (Windows; U; Windows NT 5.1; en-US; rv:1.8.1.13) Gecko/20080311 Firefox/2.0.0.13');
curl_setopt($ch, CURLOPT_RETURNTRANSFER, 1);
curl_setopt($ch, CURLOPT_SSLVERSION,3);
$ascii_file = curl_exec($ch);
curl_close($ch);
if ($ascii_file === false) die("Could not read url " . $url_ascii . "\n");
// -------------------------------------------------
// A simple test that this is indeed our data file:
// Must start with '# ' string.
// -------------------------------------------------
if (substr($ascii_file,0,2) !== "# ") die("Ascii file not in proper format " . "\n");
// ------------------------------------------------------
// Define input parameter array for getVOTableURL method
// ------------------------------------------------------
$params = array(
'Table_name' => $url_ascii,
'Description' => "",
'Fields' => array()
);
// -------------------------------------------------------------------
// Go through the file line by line and extract field names and data
// -------------------------------------------------------------------
$ascii_table = preg_split("/[\n]+/", $ascii_file); // Split the ascii file into an array of lines
$First = true; // Flag for detecting the first non-comment line (= line with field names)
foreach($ascii_table as $line) {
// Store comment lines into VOT table description
// Comment lines start with character '#'
if (substr($line,0,1) == "#") {
$params['Description'] .= $line . "\n";
continue;
}
// If first non-comment line read field names and units. The line content is something like:
// it year mo dy hr mn sc msc X Y Z rho ux uy uz Bx(nT) By(nT) Bz(nT) p jx jy jz
if ($First) {
$lineX = str_replace ('X' , 'X(Re)' , $line);
$lineY = str_replace ('Y' , 'Y(Re)' , $lineX);
$lineZ = str_replace ('Z' , 'Z(Re)' , $lineY);
$lineRho = str_replace ('rho' , 'rho(cm-3)' , $lineZ);
$lineUx = str_replace ('ux' , 'ux(km/s)' , $lineRho);
$lineUy = str_replace ('uy' , 'uy(km/s)' , $lineUx);
$lineUz = str_replace ('uz' , 'uz(km/s)' , $lineUy);
$lineP = str_replace ('P' , 'P(nPa)' , $lineUz);
$lineJx = str_replace ('jx' , 'jx(mA/m2)' , $lineP);
$lineJy = str_replace ('jy' , 'jy(mA/m2)' , $lineJx);
$lineJz = str_replace ('jz' , 'jz(mA/m2)' , $lineJy);
$Field_list = preg_split("/[\s,]+/", trim($lineJz)); // Create an array of field names
foreach($Field_list as $field) {
$params['Fields'][] = array(); // Create a new associative array for this field
$index = count($params['Fields']) - 1;
// Get name and possible unit (included in parenthesis)
preg_match("/([^(]+)[(]*([^)]*)[)]*$/", $field, $matches);
$params['Fields'][$index]['name'] = $matches[1];
$params['Fields'][$index]['unit'] = $matches[2]; // unit string is "" if no unit defined
// Set the datatype attribute. Otherwise Topcat won't recognize the variable
if (in_array($matches[1], array('it','year','mo','dy','hr','mn','sc','msc')))
$params['Fields'][$index]['datatype'] = 'int';
else
$params['Fields'][$index]['datatype'] = 'float';
$params['Fields'][$index]['data'] = array(); // Define the array for data values
}
$First = false;
continue;
}
// Read data line
$i = 0;
$Value_list = preg_split("/[\s,]+/", trim($line)); // Make an array of data values in this line
foreach($Value_list as $value) {
$params['Fields'][$i++]['data'][] = $value; // Add the data value into field's data array
}
}
// ---------------------------------------
// Add the time column in ISO8601 format.
// ---------------------------------------
// First try to locate the data arrays for year, mo, dy, hr, mn, sc and msc columns
foreach($params['Fields'] as $field) {
if ($field['name'] == 'year') $year_data = $field['data'];
if ($field['name'] == 'mo') $mo_data = $field['data'];
if ($field['name'] == 'dy') $dy_data = $field['data'];
if ($field['name'] == 'hr') $hr_data = $field['data'];
if ($field['name'] == 'mn') $mn_data = $field['data'];
if ($field['name'] == 'sc') $sc_data = $field['data'];
if ($field['name'] == 'msc') $msc_data = $field['data'];
}
// If all date arrays are found then create the date string in ISO8601 format
if (isset($year_data) and isset($mo_data) and isset($dy_data) and isset($hr_data) and isset($mn_data) and isset($sc_data) and isset($msc_data)) {
$params['Fields'][] = array(); // Add new field to $params array
$index = count($params['Fields']) - 1; // Index of the new field
$params['Fields'][$index]['name'] = 'Time'; // Set the name to 'Time'
$params['Fields'][$index]['data'] = array(); // Create array for data values
for ($i = 0; $i < count($year_data); $i++) { // Fill the data array
$time_stamp = gmmktime($hr_data[$i], $mn_data[$i], $sc_data[$i], $mo_data[$i], $dy_data[$i], $year_data[$i]);
$time_str = gmdate("Y-m-d\TH:i:s", $time_stamp) . "." . substr("000" . $msc_data[$i],-3);
$params['Fields'][$index]['data'][] = $time_str; // Add the value to the end of the data table
}
}
// -------------------------------------------------------------------------
// More computable quantities (e.g. Btot, Utot) may be added here similarly
// -------------------------------------------------------------------------
// -----------------------------------------------------------------------------------------------
// Finally call the getVOTableURL method to create a VOTtable file and store it into FMI's server
// -----------------------------------------------------------------------------------------------
$methods_file = "http://impex-fp7.fmi.fi/ws/Methods_FMI.wsdl";
$client = new SoapClient($methods_file);
try {
$data_url = $client->getVOTableURL($params);
}
catch (Exception $e) {
echo "Error : <br />";
echo $e->getMessage();
exit();
}
if ($data_url){
$contenu = file_get_contents($data_url);
echo $contenu;
}
// echo $data_url . "\n";
?>