Commit b14aac734dec2a252fd28aadfd139a3f8aeec768
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04317ed4
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Add netCDF library with a script to install it with the parallel support
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1 | +netcdf/tmp/ | |
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1 | +#!/bin/bash | |
2 | +# | |
3 | + | |
4 | +if [ -z "${1}" ]; then | |
5 | + echo "Usage : ${0} INSTALL_DIR" | |
6 | + exit 1 | |
7 | +else | |
8 | + INSTALL_DIR=${1} | |
9 | +fi; | |
10 | + | |
11 | +ZLIB_ARCHIVE_NAME="zlib-1.2.8" | |
12 | +ZLIB_ARCHIVE_PATH="../zlib/"$ZLIB_ARCHIVE_NAME".tar.gz" | |
13 | + | |
14 | +MPICH_ARCHIVE_NAME="mpich-3.1.4" | |
15 | +MPICH_ARCHIVE_PATH="../mpich/"$MPICH_ARCHIVE_NAME".tar.gz" | |
16 | + | |
17 | +HDF5_ARCHIVE_NAME="hdf5-1.8.15" | |
18 | +HDF5_ARCHIVE_PATH="../hdf5/"$HDF5_ARCHIVE_NAME".tar" | |
19 | + | |
20 | +NETCDF_ARCHIVE_NAME="netcdf-4.3.3.1" | |
21 | +NETCDF_ARCHIVE_PATH="./"$NETCDF_ARCHIVE_NAME".tar.gz" | |
22 | + | |
23 | +SCRIPT_DIR=`pwd` | |
24 | + | |
25 | +TMP_DIR=$SCRIPT_DIR"/tmp" | |
26 | + | |
27 | +mkdir -p $TMP_DIR | |
28 | +mkdir -p $INSTALL_DIR | |
29 | + | |
30 | +echo "--------"; | |
31 | +echo "| ZLIB |"; | |
32 | +echo "--------"; | |
33 | + | |
34 | +tar xzf $ZLIB_ARCHIVE_PATH -C $TMP_DIR | |
35 | +if [[ $? != 0 ]]; then echo "[ERROR] Cannot decompress zlib archive"; exit $?; fi | |
36 | + | |
37 | +cd $TMP_DIR"/"$ZLIB_ARCHIVE_NAME | |
38 | + | |
39 | +./configure --prefix=$INSTALL_DIR | |
40 | +if [[ $? != 0 ]]; then echo "[ERROR] Cannot configure zlib"; exit $?; fi | |
41 | +make | |
42 | +if [[ $? != 0 ]]; then echo "[ERROR] Cannot compile zlib"; exit $?; fi | |
43 | +make install | |
44 | +if [[ $? != 0 ]]; then echo "[ERROR] Cannot install zlib"; exit $?; fi | |
45 | + | |
46 | +echo "---------"; | |
47 | +echo "| MPICH |"; | |
48 | +echo "---------"; | |
49 | + | |
50 | +cd $SCRIPT_DIR | |
51 | +tar xzf $MPICH_ARCHIVE_PATH -C $TMP_DIR | |
52 | +if [[ $? != 0 ]]; then echo "[ERROR] Cannot decompress MPICH archive"; exit $?; fi | |
53 | + | |
54 | +cd $TMP_DIR"/"$MPICH_ARCHIVE_NAME | |
55 | + | |
56 | +./configure CFLAGS="-D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64" --disable-fortran --prefix=$INSTALL_DIR |& tee c.txt | |
57 | +if [[ $? != 0 ]]; then echo "[ERROR] Cannot configure MPICH"; exit $?; fi | |
58 | +make 2>&1 | tee m.txt | |
59 | +if [[ $? != 0 ]]; then echo "[ERROR] Cannot compile MPICH"; exit $?; fi | |
60 | +make install |& tee mi.txt | |
61 | +if [[ $? != 0 ]]; then echo "[ERROR] Cannot install MPICH"; exit $?; fi | |
62 | + | |
63 | +export PATH=$INSTALL_DIR"/bin":$PATH | |
64 | +export LD_LIBRARY_PATH=$INSTALL_DIR"/lib":$LD_LIBRARY_PATH | |
65 | + | |
66 | +echo "------------------------------"; | |
67 | +echo "| HDF5 with parallel support |"; | |
68 | +echo "------------------------------"; | |
69 | + | |
70 | +cd $SCRIPT_DIR | |
71 | +tar xf $HDF5_ARCHIVE_PATH -C $TMP_DIR | |
72 | +if [[ $? != 0 ]]; then echo "[ERROR] Cannot decompress HDF5 archive"; exit $?; fi | |
73 | + | |
74 | +cd $TMP_DIR"/"$HDF5_ARCHIVE_NAME | |
75 | + | |
76 | +CC=$INSTALL_DIR/bin/mpicc ./configure --prefix=$INSTALL_DIR --enable-parallel --disable-fortran --with-zlib=$INSTALL_DIR | |
77 | +if [[ $? != 0 ]]; then echo "[ERROR] Cannot configure HDF5"; exit $?; fi | |
78 | +make | |
79 | +if [[ $? != 0 ]]; then echo "[ERROR] Cannot compile HDF5"; exit $?; fi | |
80 | +make check | |
81 | +if [[ $? != 0 ]]; then echo "[ERROR] Check error with HDF5"; exit $?; fi | |
82 | +make install | |
83 | +if [[ $? != 0 ]]; then echo "[ERROR] Cannot install HDF5"; exit $?; fi | |
84 | + | |
85 | +echo "--------------------------------"; | |
86 | +echo "| NetCDF with parallel support |"; | |
87 | +echo "--------------------------------"; | |
88 | + | |
89 | +cd $SCRIPT_DIR | |
90 | +tar xzf $NETCDF_ARCHIVE_PATH -C $TMP_DIR | |
91 | +if [[ $? != 0 ]]; then echo "[ERROR] Cannot decompress NetCDF archive"; exit $?; fi | |
92 | + | |
93 | +cd $TMP_DIR"/"$NETCDF_ARCHIVE_NAME | |
94 | + | |
95 | +CPPFLAGS=-I$INSTALL_DIR/include LDFLAGS=-L$INSTALL_DIR/lib ./configure --prefix=$INSTALL_DIR | |
96 | +if [[ $? != 0 ]]; then echo "[ERROR] Cannot configure NetCDF"; exit $?; fi | |
97 | +make | |
98 | +if [[ $? != 0 ]]; then echo "[ERROR] Cannot compile NetCDF"; exit $?; fi | |
99 | +make check | |
100 | +if [[ $? != 0 ]]; then echo "[ERROR] Check error with NetCDF"; exit $?; fi | |
101 | +make install | |
102 | +if [[ $? != 0 ]]; then echo "[ERROR] Cannot install NetCDF"; exit $?; fi | |
103 | + | |
104 | +echo "[DONE]" | |
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netcdf/netcdf-4.3.2.tar.gz deleted
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