From 452c334ec7988ef353fb6f1d7dc14a61c8bd1927 Mon Sep 17 00:00:00 2001 From: ichoubani Date: Tue, 7 Dec 2021 14:41:32 +0100 Subject: [PATCH] Implementation Of Plugin Formalism --- src/gdl_startup_sample | 0 src/idl/HFI_UC_CC/get_hfibolo_list.pro | 0 src/idl/HFI_UC_CC/hfi_color_correction_dustem.pro | 0 src/idl/HFI_UC_CC/hfi_read_bandpass.pro | 0 src/idl/Other/read_draine.pro | 0 src/idl/Other/read_draine_qabs.pro | 0 src/idl/all_dustem_dependencies.xcat | 0 src/idl/bg.pro | 0 src/idl/bg_mpfit.pro | 0 src/idl/dustem_cc.pro | 0 src/idl/dustem_cc_mips_vs_handbook.pro | 0 src/idl/dustem_collect_wav.pro | 0 src/idl/dustem_compute_gb_sed.pro | 0 src/idl/dustem_compute_gb_sed_fast.pro | 0 src/idl/dustem_compute_polsed.pro | 89 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++----------- src/idl/dustem_compute_sed.pro | 27 +++++++++++++++------------ src/idl/dustem_create_continuum.pro | 21 ++++++++++++++++++++- src/idl/dustem_create_freefree.pro | 6 +++++- 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a/src/idl/HFI_UC_CC/hfi_color_correction_dustem.pro +++ b/src/idl/HFI_UC_CC/hfi_color_correction_dustem.pro diff --git a/src/idl/HFI_UC_CC/hfi_read_bandpass.pro b/src/idl/HFI_UC_CC/hfi_read_bandpass.pro old mode 100644 new mode 100755 index 7dc3d5d..7dc3d5d --- a/src/idl/HFI_UC_CC/hfi_read_bandpass.pro +++ b/src/idl/HFI_UC_CC/hfi_read_bandpass.pro diff --git a/src/idl/Other/read_draine.pro b/src/idl/Other/read_draine.pro old mode 100644 new mode 100755 index 640bcd1..640bcd1 --- a/src/idl/Other/read_draine.pro +++ b/src/idl/Other/read_draine.pro diff --git a/src/idl/Other/read_draine_qabs.pro b/src/idl/Other/read_draine_qabs.pro old mode 100644 new mode 100755 index 440e82b..440e82b --- a/src/idl/Other/read_draine_qabs.pro +++ b/src/idl/Other/read_draine_qabs.pro diff --git a/src/idl/all_dustem_dependencies.xcat b/src/idl/all_dustem_dependencies.xcat old mode 100644 new mode 100755 index 8157fd8..8157fd8 --- a/src/idl/all_dustem_dependencies.xcat +++ b/src/idl/all_dustem_dependencies.xcat diff --git a/src/idl/bg.pro b/src/idl/bg.pro old mode 100644 new mode 100755 index 7a1f2a9..7a1f2a9 --- a/src/idl/bg.pro +++ b/src/idl/bg.pro diff --git a/src/idl/bg_mpfit.pro b/src/idl/bg_mpfit.pro old mode 100644 new mode 100755 index f4be62e..f4be62e --- a/src/idl/bg_mpfit.pro +++ b/src/idl/bg_mpfit.pro diff --git a/src/idl/dustem_cc.pro b/src/idl/dustem_cc.pro old mode 100644 new mode 100755 index be271a7..be271a7 --- a/src/idl/dustem_cc.pro +++ b/src/idl/dustem_cc.pro diff --git a/src/idl/dustem_cc_mips_vs_handbook.pro b/src/idl/dustem_cc_mips_vs_handbook.pro old mode 100644 new mode 100755 index 29f8686..29f8686 --- a/src/idl/dustem_cc_mips_vs_handbook.pro +++ b/src/idl/dustem_cc_mips_vs_handbook.pro diff --git a/src/idl/dustem_collect_wav.pro b/src/idl/dustem_collect_wav.pro old mode 100644 new mode 100755 index b81c87e..b81c87e --- a/src/idl/dustem_collect_wav.pro +++ b/src/idl/dustem_collect_wav.pro diff --git a/src/idl/dustem_compute_gb_sed.pro b/src/idl/dustem_compute_gb_sed.pro old mode 100644 new mode 100755 index c803506..c803506 --- a/src/idl/dustem_compute_gb_sed.pro +++ b/src/idl/dustem_compute_gb_sed.pro diff --git a/src/idl/dustem_compute_gb_sed_fast.pro b/src/idl/dustem_compute_gb_sed_fast.pro old mode 100644 new mode 100755 index cc5ed50..cc5ed50 --- a/src/idl/dustem_compute_gb_sed_fast.pro +++ b/src/idl/dustem_compute_gb_sed_fast.pro diff --git a/src/idl/dustem_compute_polsed.pro b/src/idl/dustem_compute_polsed.pro old mode 100644 new mode 100755 index e6f3644..f398098 --- a/src/idl/dustem_compute_polsed.pro +++ b/src/idl/dustem_compute_polsed.pro @@ -1,4 +1,4 @@ -FUNCTION dustem_compute_polsed,p_dim,stp,_extra=extra,out_st=out_st +FUNCTION dustem_compute_polsed,p_dim,stp,_extra=extra,out_st=out_st,dustem_qsed,dustem_used,Q_sed,U_sed ;+ ; NAME: @@ -42,20 +42,75 @@ IF keyword_set(help) THEN BEGIN ENDIF IF not keyword_set(stp) THEN BEGIN - ;st=dustem_run(p_dim) - dustem_create_functions,p_dim/(*(*!dustem_fit).param_init_values),res=res stp=dustem_run(p_dim) + dustem_activate_plugins,p_dim/(*(*!dustem_fit).param_init_values),res=res,stp ENDIF -If keyword_set(result) THEN result=st -fact = 1.e4*1.E20/(4.*!pi)/(3.e8/1.e-6/stp.polsed.wav)*1.e20/1.e7 + +If keyword_set(result) THEN result=stp +fact = 1.e4*1.E20/(4.*!pi)/(3.e8/1.e-6/(stp.polsed).wav)*1.e20/1.e7 spec = stp.polsed.em_tot * fact ;stop + +;ADDING PLUGIN TO SPECTRUM---------------- +for i=0L,n_tags(*!dustem_scope)-1 do begin +if total(strsplit((*!dustem_scope).(i),'+',/extract) eq 'ADD_POLSED') then begin +if tag_exist(*!dustem_scope,'SYNCHROTRON') then begin +;little segment for the polarization fraction of synchrotron +indx=where((*(*!dustem_fit).param_descs) EQ 'dustem_create_stokes_3') +frac_synch=p_dim(indx) ; not initial value for the fake polsed. You need to find a solution +spec+=(*(*!dustem_plugin).(i))*frac_synch(0) +endif else begin +frac_synch=0.7 ;default value +spec+=(*(*!dustem_plugin).(i))*frac_synch +endelse +endif +endfor +;----------------------------------------- + + if not isarray(spec) THEN stop ;stop ;COMPUTE THE MODEL SED dustem_polsed = (*!dustem_data.polsed).values * 0. + +;MODIFYING VIA PLUGIN-------------- THIS BLOCK NEEDS TO BE UNDER THE DUSTEM_POLSED LINE +for i=0L,n_tags(*!dustem_scope)-1 do begin + +if total(strsplit((*!dustem_scope).(i),'+',/extract) eq 'MODIFY') then begin + +;making sure it's the stokes plugin that gets used here + +iidx=where(tag_names(*!dustem_scope) eq 'SYNCHROTRON',countiidx) + +IF countiidx ne 0 THEN BEGIN + +Q_dust=(*(*!dustem_plugin).(i))(0:n_elements((*(*!dustem_plugin).(i)))/4-1) +U_dust=(*(*!dustem_plugin).(i))(n_elements((*(*!dustem_plugin).(i)))/4:n_elements((*(*!dustem_plugin).(i)))/2-1) +Q_synch=(*(*!dustem_plugin).(i))(n_elements((*(*!dustem_plugin).(i)))/2:3*n_elements((*(*!dustem_plugin).(i)))/4-1) +U_synch=(*(*!dustem_plugin).(i))(3*n_elements((*(*!dustem_plugin).(i)))/4:*) + +ENDIF ELSE BEGIN +Q_dust=(*(*!dustem_plugin).(i))(0:n_elements((*(*!dustem_plugin).(i)))/2-1) +U_dust=(*(*!dustem_plugin).(i))(n_elements((*(*!dustem_plugin).(i)))/2:*) +Q_synch=Q_dust*0 +U_synch=U_dust*0 +ENDELSE + +;THE ABOVE VARIABLES SHOULD BE ACCESSED NATURALLY IN THE MPFIT_RUN.PRO +Q_sed=Q_dust*fact+Q_synch +U_sed=U_dust*fact+U_synch + +;data the dustem_wrap will use +dustem_qsed = dustem_polsed +dustem_used = dustem_polsed + +endif +endfor +;------------------------------------------- + + ;stop IF !dustem_do_cc NE 0 AND !dustem_never_do_cc EQ 0 THEN BEGIN message,'DOING color correction calculations',/info @@ -64,13 +119,19 @@ ENDIF ELSE BEGIN ENDELSE ind_polsed=where((*!dustem_data.polsed).filt_names NE 'SPECTRUM',count_polsed) - -IF count_polsed NE 0 THEN BEGIN + +IF count_polsed NE 0 THEN BEGIN ; INCLUDE COLOR CORRECTIONS OF (Q,U) for dust & synch filter_names=((*!dustem_data.polsed).filt_names)(ind_polsed) - ;FOR ii=0L,n_elements(filter_names)-1 DO BEGIN - spolsed=dustem_cc(stp.sed.wav,spec,filter_names,cc=cc) - ;ENDFOR - dustem_polsed(ind_polsed)=spolsed + + spolsed=dustem_cc(stp.sed.wav,spec,filter_names,cc=cc) & dustem_polsed(ind_polsed)=spolsed + + + ;PLUGIN 'STOKES' W/ scope='MODIFY' PART------------------------------------ + + if isa(dustem_qsed) then sqsed=dustem_cc(stp.sed.wav,Q_sed,filter_names,cc=cc) & dustem_qsed(ind_polsed)=sqsed + if isa(dustem_used) then sused=dustem_cc(stp.sed.wav,U_sed,filter_names,cc=cc) & dustem_used(ind_polsed)=sused + ;-------------------------------------------------------------------------- + ENDIF ;For spectrum data points, interpolate in log-log @@ -79,9 +140,15 @@ ENDIF ind_spec=where((*!dustem_data.polsed).filt_names EQ 'SPECTRUM',count_spec) IF count_spec NE 0 THEN BEGIN dustem_polsed(ind_spec)=interpol(spec,stp.wav,(((*!dustem_data.polsed).wav)(ind_spec))) + + ;STOKES PARAMS TREATMENT + if isa(dustem_qsed) then dustem_qsed(ind_spec)=interpol(Q_sed,stp.wav,(((*!dustem_data.polsed).wav)(ind_spec))) + if isa(dustem_used) then dustem_used(ind_spec)=interpol(U_sed,stp.wav,(((*!dustem_data.polsed).wav)(ind_spec))) + ENDIF out_st=stp + ;clean pointers heap_gc diff --git a/src/idl/dustem_compute_sed.pro b/src/idl/dustem_compute_sed.pro old mode 100644 new mode 100755 index 051d2be..5efd333 --- a/src/idl/dustem_compute_sed.pro +++ b/src/idl/dustem_compute_sed.pro @@ -1,4 +1,4 @@ -FUNCTION dustem_compute_sed,p_dim,st,cont=cont,freefree=freefree,synchrotron=synchrotron,_extra=extra,out_st=out_st,wave0=wave0 +FUNCTION dustem_compute_sed,p_dim,st,_extra=extra,out_st=out_st,wave0=wave0 ;+ ; NAME: @@ -42,16 +42,12 @@ IF keyword_set(help) THEN BEGIN goto,the_end ENDIF -;stop IF not keyword_set(st) THEN BEGIN - ;st=dustem_run(p_dim) - IF !dustem_idl_continuum THEN cont=dustem_create_continuum() - IF !dustem_idl_freefree THEN freefree=dustem_create_freefree() - IF !dustem_idl_synchrotron THEN synchrotron=dustem_create_synchrotron() - dustem_create_functions,p_dim/(*(*!dustem_fit).param_init_values),cont=cont,freefree=freefree,synchrotron=synchrotron,res=res + st=dustem_run(p_dim) - ;stop + dustem_activate_plugins,p_dim/(*(*!dustem_fit).param_init_values),res=res,st + ENDIF ;If keyword_set(result) THEN result=st @@ -60,10 +56,17 @@ if not keyword_set(wave0) then wave0 = 0. ; Convert into MJy/sr/1d20 fact = 1.e4*1.E20/(4.*!pi)/(3.e8/1.e-6/st.sed.wav)*1.e20/1.e7 spec = st.sed.em_tot * fact -IF !dustem_idl_continuum THEN spec=spec+cont -IF !dustem_idl_freefree THEN spec=spec+freefree -IF !dustem_idl_synchrotron THEN spec=spec+synchrotron + +;ADDING PLUGIN TO SPECTRUM---------------- +;if n_tags(!dustem_data.sed) gt 1 then begin ; executing only when !dustem_data.sed is set meaning that this allows for the creation of fake seds +for i=0L,n_tags(*!dustem_scope)-1 do begin +if total(strsplit((*!dustem_scope).(i),'+',/extract) eq 'ADD_SED') then spec+=(*(*!dustem_plugin).(i)) +endfor +;endif +;------------------------------------------ + if not isarray(spec) THEN stop + ;COMPUTE THE MODEL SED dustem_sed = (*!dustem_data.sed).values * 0. @@ -81,7 +84,7 @@ IF count_sed NE 0 THEN BEGIN ;ENDFOR dustem_sed[ind_sed]=ssed ENDIF ELSE BEGIN - print,"**** WARNING **** NO FILTER defined in DATA for COLOUR CORRECTION" + print,"**** WARNING **** NO FILTER defined in DATA for COLOUR CORRECTION" ENDELSE ;For spectrum data points, interpolate in log-log diff --git a/src/idl/dustem_create_continuum.pro b/src/idl/dustem_create_continuum.pro old mode 100644 new mode 100755 index 7b6ccd0..506fb5c --- a/src/idl/dustem_create_continuum.pro +++ b/src/idl/dustem_create_continuum.pro @@ -1,4 +1,4 @@ -FUNCTION dustem_create_continuum,key=key,val=val,help=help +FUNCTION dustem_create_continuum,key=key,val=val,scope,help=help ;+ ; NAME: @@ -34,6 +34,7 @@ FUNCTION dustem_create_continuum,key=key,val=val,help=help ; Written by JPB ;- + IF keyword_set(help) THEN BEGIN doc_library,'dustem_create_continuum' output=0. @@ -46,11 +47,16 @@ ENDIF temp=1000. ampl=1.d-2 + + IF keyword_set(key) THEN BEGIN a=where(key EQ 1,count1) b=where(key EQ 2,count2) + IF count1 NE 0 then temp=(val(a))(0) IF count2 NE 0 then ampl=(val(b))(0) + + ENDIF IF !dustem_which EQ 'DESERT' THEN BEGIN @@ -63,6 +69,19 @@ ENDELSE norm = max(dustem_planck_function(temp,lambir)) output = ampl*dustem_planck_function(temp,lambir)/norm + +; if keyword_set(scopes) then begin +; k=execute(scopes) +; k=execute('((*!dustem_plugins).nir_continuum)=l') ; maybe some changes will have to be done at the dustem_init level +; print, 'l is:' +; print, l +; help, l +; endif +; if not keyword_set (scopes) && ((*!dustem_plugins).nir_continuum) eq '' then ((*!dustem_plugins).nir_continuum)=['ADD_SED'] ; DEFAULT VALUE FOR THIS PLUGIN + +scope=((*!dustem_scope).continuum) ; FUNCTION RETURNS SCOPE +;if keyword_set(scope) then + the_end: RETURN,output diff --git a/src/idl/dustem_create_freefree.pro b/src/idl/dustem_create_freefree.pro old mode 100644 new mode 100755 index 7090c68..1ce12d8 --- a/src/idl/dustem_create_freefree.pro +++ b/src/idl/dustem_create_freefree.pro @@ -1,4 +1,4 @@ -FUNCTION dustem_create_freefree,key=key,val=val,help=help +FUNCTION dustem_create_freefree,key=key,val=val,scope,help=help ;+ ; NAME: @@ -101,6 +101,10 @@ CASE use_method OF END ENDCASE + +scope=((*!dustem_scope).free_free) +;if keyword_set(scope) then + the_end: RETURN,output diff --git a/src/idl/dustem_create_functions.pro b/src/idl/dustem_create_functions.pro deleted file mode 100644 index 54e0d48..0000000 --- a/src/idl/dustem_create_functions.pro +++ /dev/null @@ -1,49 +0,0 @@ -PRO dustem_create_functions,p_min,cont=cont,freefree=freefree,synchrotron=synchrotron,res=res - -p_dim = p_min * (*(*!dustem_fit).param_init_values) - -f=1 -FOR i=0L,n_elements(p_min)-1 DO BEGIN - ;stop - parameter_type=dustem_parameter_description2type((*(*!dustem_fit).param_descs)[i],string_name=string_name) - ;IF ((*(*!dustem_fit).param_func)(i) NE 0.) THEN BEGIN ;test if this is a parameter for a pluggin - IF parameter_type EQ 'PLUGIN' THEN BEGIN ;test if this is a parameter for a plugin - ftn = strmid((*(*!dustem_fit).param_descs)(i), 0, strlen((*(*!dustem_fit).param_descs)(i))-2) ;caution, this would not allow more than 9 parameters - tmp = (where(*(*!dustem_fit).param_func eq f, count)) - PDO_tmp = (*(*!dustem_fit).param_descs)(tmp) - p_dim_tmp = p_dim(tmp) - index = fltarr(count) & value = fltarr(count) - FOR k=0, count-1 DO BEGIN - index[k] = strmid(PDO_tmp[k],0,1,/REV ) - value[k] = p_dim_tmp[k] - ENDFOR - IF ftn EQ 'dustem_create_ionfrac' THEN BEGIN - key_ionfrac=index - val_ionfrac=value - ENDIF - IF ftn NE 'dustem_create_continuum' and ftn NE 'dustem_create_freefree' and ftn NE 'dustem_create_synchrotron' THEN BEGIN - str='res='+ftn+'(key=index,val=value)' - toto=execute(str) - IF !dustem_verbose NE 0 THEN message,str,/info - ENDIF ELSE BEGIN - IF ftn EQ 'dustem_create_continuum' THEN BEGIN - str='cont='+ftn+'(key=index,val=value)' - toto=execute(str) - IF !dustem_verbose NE 0 THEN message,str,/info - ENDIF - IF ftn EQ 'dustem_create_freefree' THEN BEGIN - str='freefree='+ftn+'(key=index,val=value)' - toto=execute(str) - IF !dustem_verbose NE 0 THEN message,str,/info - ENDIF - IF ftn EQ 'dustem_create_synchrotron' THEN BEGIN - str='synchrotron='+ftn+'(key=index,val=value)' - toto=execute(str) - IF !dustem_verbose NE 0 THEN message,str,/info - ENDIF - ENDELSE - f=f+1 & i=i+count-1 - ENDIF -ENDFOR - -END diff --git a/src/idl/dustem_create_ionfrac.pro b/src/idl/dustem_create_ionfrac.pro old mode 100644 new mode 100755 index 30c6387..30c6387 --- a/src/idl/dustem_create_ionfrac.pro +++ b/src/idl/dustem_create_ionfrac.pro diff --git a/src/idl/dustem_create_synchrotron.pro b/src/idl/dustem_create_synchrotron.pro old mode 100644 new mode 100755 index a3cc5a5..37c9eca --- a/src/idl/dustem_create_synchrotron.pro +++ b/src/idl/dustem_create_synchrotron.pro @@ -1,10 +1,10 @@ -FUNCTION dustem_create_synchrotron,key=key,val=val,help=help +FUNCTION dustem_create_synchrotron,key=key,val=val,scope,help=help ;+ ; NAME: ; dustem_create_synchrotron ; PURPOSE: -; DUSTEM pluggin to compute synchrotron emission +; DUSTEM plugin to compute synchrotron emission ; CATEGORY: ; DUSTEM Wrapper ; CALLING SEQUENCE: @@ -42,31 +42,38 @@ ENDIF ;default values of input parameters s=3 ;power spectrum of CR E distribution -A=1. ;Synchrotron radiation amplitude at 10 mm +A=1 ;Synchrotron radiation amplitude at 10 mm + IF keyword_set(key) THEN BEGIN a=where(key EQ 1,count1) b=where(key EQ 2,count2) - IF count1 NE 0 then s=(val(a))(0) - IF count2 NE 0 then A=(val(b))(0) -ENDIF + IF count1 NE 0 then s=(val(a))(0) ;else s=3 + IF count2 NE 0 then A=(val(b))(0) ;else A=1 +ENDIF + IF !dustem_which EQ 'DESERT' THEN BEGIN lambir=((*!dustem_params).gemissiv.lambir) ENDIF ELSE BEGIN lambir=((*!dustem_params).lambda.lambda) ENDELSE + cmic=3.e14 nu=cmic/lambir lambir_ref=10000. + + ;see Deschenes et al 2008, eq 6 -synch=nu^(-(s+3.)/2.) -norm=interpol(synch,lambir,lambir_ref) -synch=synch/norm*A +output=nu^(-(s+3.)/2.) +norm=interpol(output,lambir,lambir_ref) +output=A*output/norm + -output=synch +scope=((*!dustem_scope).synchrotron) +;if keyword_set(scope) then the_end: RETURN,output diff --git a/src/idl/dustem_data_tag.pro b/src/idl/dustem_data_tag.pro old mode 100644 new mode 100755 index b5df190..b5df190 --- a/src/idl/dustem_data_tag.pro +++ b/src/idl/dustem_data_tag.pro diff --git a/src/idl/dustem_define_isrf_stellar_modifyer_variable.pro b/src/idl/dustem_define_isrf_stellar_modifyer_variable.pro old mode 100644 new mode 100755 index 18ce5be..18ce5be --- a/src/idl/dustem_define_isrf_stellar_modifyer_variable.pro +++ b/src/idl/dustem_define_isrf_stellar_modifyer_variable.pro diff --git a/src/idl/dustem_extsed_plot.pro b/src/idl/dustem_extsed_plot.pro old mode 100644 new mode 100755 index 8037803..8037803 --- a/src/idl/dustem_extsed_plot.pro +++ b/src/idl/dustem_extsed_plot.pro diff --git a/src/idl/dustem_filter2fluxconv.pro b/src/idl/dustem_filter2fluxconv.pro old mode 100644 new mode 100755 index 2085f92..2085f92 --- a/src/idl/dustem_filter2fluxconv.pro +++ b/src/idl/dustem_filter2fluxconv.pro diff --git a/src/idl/dustem_filter2freq.pro b/src/idl/dustem_filter2freq.pro old mode 100644 new mode 100755 index dfe60c4..dfe60c4 --- a/src/idl/dustem_filter2freq.pro +++ b/src/idl/dustem_filter2freq.pro diff --git a/src/idl/dustem_filter2instru.pro b/src/idl/dustem_filter2instru.pro old mode 100644 new mode 100755 index 9cc49e3..9cc49e3 --- a/src/idl/dustem_filter2instru.pro +++ b/src/idl/dustem_filter2instru.pro diff --git a/src/idl/dustem_filter2reso.pro b/src/idl/dustem_filter2reso.pro old mode 100644 new mode 100755 index 0e10339..0e10339 --- a/src/idl/dustem_filter2reso.pro +++ b/src/idl/dustem_filter2reso.pro diff --git a/src/idl/dustem_filter2sig2.pro b/src/idl/dustem_filter2sig2.pro old mode 100644 new mode 100755 index fe47b21..fe47b21 --- a/src/idl/dustem_filter2sig2.pro +++ b/src/idl/dustem_filter2sig2.pro diff --git a/src/idl/dustem_filter2sigabs.pro b/src/idl/dustem_filter2sigabs.pro old mode 100644 new mode 100755 index 6ae939c..6ae939c --- a/src/idl/dustem_filter2sigabs.pro +++ b/src/idl/dustem_filter2sigabs.pro diff --git a/src/idl/dustem_filter2unit.pro b/src/idl/dustem_filter2unit.pro old mode 100644 new mode 100755 index 87278d4..87278d4 --- a/src/idl/dustem_filter2unit.pro +++ b/src/idl/dustem_filter2unit.pro diff --git a/src/idl/dustem_filter2wav.pro b/src/idl/dustem_filter2wav.pro old mode 100644 new mode 100755 index 40cd0b7..40cd0b7 --- a/src/idl/dustem_filter2wav.pro +++ b/src/idl/dustem_filter2wav.pro diff --git a/src/idl/dustem_filter_init.pro b/src/idl/dustem_filter_init.pro old mode 100644 new mode 100755 index 3fc40a3..baeea41 --- a/src/idl/dustem_filter_init.pro +++ b/src/idl/dustem_filter_init.pro @@ -85,7 +85,7 @@ IF not keyword_set(dir) THEN BEGIN 'DESERT':dir_in=!dustem_soft_dir+'DESERT_POST_ISO_MORE/' 'COMPIEGNE': dir_in=!dustem_soft_dir+'MC_DAT/' 'VERSTRAETE': dir_in=!dustem_soft_dir+'d_3.5/' - 'WEB3p8': dir_in=!dustem_soft_dir + 'WEB3p8': dir_in=!dustem_soft_dir ; I CHANGED THIS and put it back to its original form ELSE: dir_in=!dustem_soft_dir+'/Data/les_DAT/' ENDCASE ENDIF ELSE BEGIN diff --git a/src/idl/dustem_fit.pro b/src/idl/dustem_fit.pro old mode 100644 new mode 100755 index 1c6cc7a..1c6cc7a --- a/src/idl/dustem_fit.pro +++ b/src/idl/dustem_fit.pro diff --git a/src/idl/dustem_fit_J13.pro b/src/idl/dustem_fit_J13.pro old mode 100644 new mode 100755 index a697090..a697090 --- a/src/idl/dustem_fit_J13.pro +++ b/src/idl/dustem_fit_J13.pro diff --git a/src/idl/dustem_fit_modified_bb_readme.pro b/src/idl/dustem_fit_modified_bb_readme.pro old mode 100644 new mode 100755 index d266e6f..d266e6f --- a/src/idl/dustem_fit_modified_bb_readme.pro +++ b/src/idl/dustem_fit_modified_bb_readme.pro diff --git a/src/idl/dustem_fit_redshift_readme.pro b/src/idl/dustem_fit_redshift_readme.pro old mode 100644 new mode 100755 index 88d9b40..88d9b40 --- a/src/idl/dustem_fit_redshift_readme.pro +++ b/src/idl/dustem_fit_redshift_readme.pro diff --git a/src/idl/dustem_fit_sed.pro b/src/idl/dustem_fit_sed.pro old mode 100644 new mode 100755 index aed17e9..aed17e9 --- a/src/idl/dustem_fit_sed.pro +++ b/src/idl/dustem_fit_sed.pro diff --git a/src/idl/dustem_fit_sed_extsed_readme.pro b/src/idl/dustem_fit_sed_extsed_readme.pro old mode 100644 new mode 100755 index 36a9efe..0588fa9 --- a/src/idl/dustem_fit_sed_extsed_readme.pro +++ b/src/idl/dustem_fit_sed_extsed_readme.pro @@ -92,29 +92,41 @@ st=dustem_set_data(ext=extsed,sed=spec,rchi2_weight=rchi2_weight,f_HI=f_HI) ;=== Set which parameters you want to fit pd = [ $ + 'dustem_create_continuum_2',$ + 'dustem_create_powerlaw_1',$ '(*!dustem_params).gas.G0', $ ;G0 '(*!dustem_params).grains(0).mdust_o_mh',$ ;PAH0 mass fraction '(*!dustem_params).grains(1).mdust_o_mh',$ ;PAH1 mass fraction '(*!dustem_params).grains(2).mdust_o_mh' $ ;amCBEx ] -p_truth=[1.,7.8000E-04,7.8000E-04,1.6500E-04] +p_truth=[0.002,0.5,1.,7.8000E-04,7.8000E-04,1.6500E-04] ;=== set initial value of parameters you want to fit ;iv=p_truth ;exact solution -iv=p_truth+[0.,3.e-5,1.e-5,-2.e-5] ;shifted from solution +iv=p_truth+[0.01,0.07,0.,3.e-5,1.e-5,-2.e-5] ;shifted from solution + +ulimed=[0, 0 ,0 , 0 ,0 ,0 ] +llimed=[1 ,1 ,1 , 1 ,1 ,1 ] +llims =[0. ,0., 0. ,0. ,0. ,0.] + + +; +dustem_init_plugins, pd ;will have to be uncommented for this procedure to work. + + -ulimed=[0 , 0 ,0 ,0 ] -llimed=[1 , 1 ,1 ,1 ] -llims =[0. ,0. ,0. ,0.] ;== SET THE FITTED PARAMETERS (now done in dustem_init_parinfo) dustem_init_parinfo,pd,iv,up_limited=ulimed,lo_limited=llimed,up_limits=ulims,lo_limits=llims + + + ;=== RUN fit -tol=1.e-10 -xtol=1.e-10 -Nitermax=2 ;maximum number of iteration. This is the criterium which will stop the fit procedure +tol=1.e-5 +xtol=1.e-5 +Nitermax=6 ;maximum number of iteration. This is the criterium which will stop the fit procedure IF keyword_set(itermax) THEN Nitermax=itermax xrange=[1.,2.e4] diff --git a/src/idl/dustem_fit_sed_polsed_readme.pro b/src/idl/dustem_fit_sed_polsed_readme.pro old mode 100644 new mode 100755 index 5e3a124..4b20775 --- a/src/idl/dustem_fit_sed_polsed_readme.pro +++ b/src/idl/dustem_fit_sed_polsed_readme.pro @@ -68,29 +68,63 @@ sed.filter=filters sed.wave=dustem_filter2wav(filters) sed.instru=dustem_filter2instru(filters) polsed=sed -st=dustem_set_data(ext=ext,polsed=polsed,polext=polext,sed=sed,polfrac=polfrac,rchi2_weight=rchi2_weight,f_HI=f_HI) +;polext=sed + +;stokes fake parameters +qsed=sed +used=sed + +; ;stokes extinction fake parameters +; qext=sed +; uext=sed + +st=dustem_set_data(ext=ext,polsed=polsed,polext=polext,sed=sed,polfrac=polfrac,rchi2_weight=rchi2_weight,f_HI=f_HI,qsed=qsed,used=used,qext=qext,uext=uext) ;=== Set which parameters you want to fit pd = [ $ '(*!dustem_params).G0', $ ;G0 '(*!dustem_params).grains(0).mdust_o_mh',$ ;PAH0 mass fraction '(*!dustem_params).grains(1).mdust_o_mh',$ ;PAH1 mass fraction - '(*!dustem_params).grains(2).mdust_o_mh' $ ;amCBEx + '(*!dustem_params).grains(2).mdust_o_mh',$ ;amCBEx + 'dustem_create_synchrotron_2',$ + 'dustem_create_stokes_1',$ ;Polarization angle psi_ref_dust + 'dustem_create_stokes_2',$;Polarization angle psi_ref_synch + 'dustem_create_stokes_3'$;Polarization fraction of synchrotron spectrum + ;'dustem_create_stext_1'$;Polarization angle in extinction PSI_ext ] -p_truth=[1.,7.8000E-04,7.8000E-04,1.6500E-04] +p_truth=[1.,7.8000E-04,7.8000E-04,1.6500E-04,5e-3,70,20,0.2] +;p_truth=[1.,7.8000E-04,7.8000E-04,1.6500E-04,25] + + + + + +dustem_init_plugins, pd ;=== set initial value of parameters you want to fit ;iv=p_truth ;exact solution -iv=p_truth+[0.,3.e-5,1.e-5,-2.e-5] ;shifted from solution +iv=p_truth+[0.,3.e-5,1.e-5,-2.e-5,5e-2,5,5,0.2];shifted from solution + +;iv=p_truth+[0.,3.e-5,1.e-5,-2.e-5,5];shifted from solution + + +ulimed=[0 ,0 ,0 ,0 ,0 ,0 , 0 ,0] ;Polarization angles exist in the range [0-180] degress + +;ulimed=[0 ,0 ,0 ,0 ,0] ;Polarization angles exist in the range [0-180] degress -ulimed=[0 , 0 ,0 ,0 ] -llimed=[1 , 1 ,1 ,1 ] -llims =[0. ,0. ,0. ,0.] + +llimed=[1 , 1 ,1 ,1 ,1 ,1 ,1 ,1] +;llimed=[1 , 1 ,1 ,1 ,1] + +llims =[0. ,0. ,0. ,0. , 0. ,0. ,0. ,0.] +;llims =[0. ,0. ,0. ,0. ,0.] ;== SET THE FITTED PARAMETERS (now done in dustem_init_parinfo) dustem_init_parinfo,pd,iv,up_limited=ulimed,lo_limited=llimed,up_limits=ulims,lo_limits=llims +;dustem_init_fixed_params,fpd,fiv + ;(*!dustem_params).grains[0].TYPE_KEYWORDS='logn-chrg-spin' ;(*!dustem_params).grains[1].TYPE_KEYWORDS='logn-chrg-spin' ;(*!dustem_params).grains[4].TYPE_KEYWORDS='pol-plaw-ed' @@ -102,19 +136,50 @@ help,!run_pol sed.spec=dustem_compute_sed(p_truth,sst,_extra=extra) ;sst is not set on purpose, for dustem_compute_sed to compute the sed using fortran code sed.error=(sed.spec*0.1);>0.1 -polsed.spec=dustem_compute_polsed(p_truth,sstp,_extra=extra) ;sst is not set on purpose, for dustem_compute_sed to compute the sed using fortran code +polsed.spec=dustem_compute_polsed(p_truth,sstp,_extra=extra,dustem_qsed,dustem_used) ;sst is not set on purpose, for dustem_compute_sed to compute the sed using fortran code polsed.error=(polsed.spec*0.1) + +;creating fake polext + +;polext.spec=dustem_compute_polext(p_truth,ssttp,dustem_qext,dustem_uext) +;polext.error=(polext.spec*0.1) +; + + +;SET qsed and used data +qsed.spec=dustem_qsed +qsed.error=qsed.spec*0.1 + + +used.spec=dustem_used +used.error=used.spec*0.1 + + +; ;SET qext and uext data +; qext.spec=dustem_qext +; qext.error=qext.spec*0.1 +; +; +; uext.spec=dustem_uext +; uext.error=uext.spec*0.1 +; + ;=== SET THE OBSERVATION STRUCTURE ind=where(sed.wave GE 0.1) -st=dustem_set_data(polsed=polsed[ind],sed=sed[ind]) +st=dustem_set_data(polsed=polsed[ind],sed=sed[ind],qsed=qsed[ind],used=used[ind]) +;st=dustem_set_data(sed=sed[ind],polext=polext[ind],qext=qext[ind],uext=uext[ind]) ;=== RUN fit -tol=1.e-10 -xtol=1.e-10 -Nitermax=5 ;maximum number of iteration. This is the criterium which will stop the fit procedure +tol=1.e-12 +xtol=1.e-12 +Nitermax=0 ; just an initialization +for i=0L,n_tags(!dustem_data)-1 do begin +if ptr_valid(!dustem_data.(i)) then Nitermax+=1 +endfor +;Nitermax=4 ;maximum number of iteration. This is the criterion which will stop the fit procedure xrange=[1.,2.e4] yrange=[1e-4,1.e3] @@ -180,3 +245,4 @@ print,'dustem_mpfit_sed executed in ',t2-t1,' sec' the_end: END + diff --git a/src/idl/dustem_fit_sed_readme.pro b/src/idl/dustem_fit_sed_readme.pro old mode 100644 new mode 100755 index 64caf9e..6bff6b3 --- a/src/idl/dustem_fit_sed_readme.pro +++ b/src/idl/dustem_fit_sed_readme.pro @@ -129,6 +129,7 @@ CASE use_model OF pd = [ $ ;'(*!dustem_params).gas.G0', $ ;G0 'dustem_create_continuum_2', $ ;intensity of NIR continuum + ;'!dustem_isrf_star_add[0].distance', $ ;distance of first stellar contribution to ISRF '!dustem_isrf_star_add[0].amplitude', $ ;amplitude of first stellar contribution to ISRF '(*!dustem_params).grains(0).mdust_o_mh',$ ;PAH0 mass fraction @@ -138,17 +139,18 @@ CASE use_model OF '(*!dustem_params).grains(4).mdust_o_mh' $ ] ;initial parameter values for parameters to be fitted - iv = [ $ + iv = [ $ ;1.0, $ - 0.002, $ ;intensity of NIR continuum - ;0.003, $ ;distance of first stellar contribution to ISRF - 1.e-3, $ ;amplitude of first stellar contribution to ISRF - 7.8e-4, $ ;mass fraction of PAH0 - 7.8e-4, $ ;mass fraction of PAH1 + 0.002, $ ;intensity of NIR continuum + ;0.003, $ ;distance of first stellar contribution to ISRF + 1.e-3, $ ;amplitude of first stellar contribution to ISRF + 7.8e-4, $ ;mass fraction of PAH0 + 7.8e-4, $ ;mass fraction of PAH1 1.65e-4, $ ;mass fraction of amCBEx 1.45e-3, $ ;mass fraction of amCBEx 7.8e-3 $ ;mass fraction of ] + Npar=n_elements(pd) ulimed=replicate(0,Npar) llimed=replicate(1,Npar) @@ -222,9 +224,11 @@ CASE use_model OF ENDCASE dustem_init,model=use_model,pol=polarization + !dustem_verbose=1 !dustem_show_plot=1 + ;=== Read sample SED ;=== Composite SED from Compiegne et al 2010, gathered by C. Bot dir=!dustem_wrap_soft_dir+'/Data/SEDs/' @@ -237,6 +241,7 @@ ind=where(spec.instru EQ 'FIRAS',count) IF count NE 0 THEN spec(ind).error=0.2*spec(ind).spec + ;=== SET THE OBSERVATION STRUCTURE st=dustem_set_data(sed=spec) @@ -245,6 +250,11 @@ dustem_init_parinfo,pd,iv,up_limited=ulimed,lo_limited=llimed,up_limits=ulims,lo dustem_init_fixed_params,fpd,fiv +dustem_init_plugins, pd ;initializing the scopes of the plugins to be read later + + + + ;=== RUN fit tol=1.e-14 use_Nitermax=2 ;maximum number of iteration. This is the criterium which will stop the fit procedure diff --git a/src/idl/dustem_fit_sed_spinning_readme.pro b/src/idl/dustem_fit_sed_spinning_readme.pro old mode 100644 new mode 100755 index c4dd0d0..c4dd0d0 --- a/src/idl/dustem_fit_sed_spinning_readme.pro +++ b/src/idl/dustem_fit_sed_spinning_readme.pro diff --git a/src/idl/dustem_fit_spin_test_readme.pro b/src/idl/dustem_fit_spin_test_readme.pro old mode 100644 new mode 100755 index 55315d1..55315d1 --- a/src/idl/dustem_fit_spin_test_readme.pro +++ b/src/idl/dustem_fit_spin_test_readme.pro diff --git a/src/idl/dustem_gb_plot_fit_sed.pro b/src/idl/dustem_gb_plot_fit_sed.pro old mode 100644 new mode 100755 index 8244950..8244950 --- a/src/idl/dustem_gb_plot_fit_sed.pro +++ b/src/idl/dustem_gb_plot_fit_sed.pro diff --git a/src/idl/dustem_get_filter_name.pro b/src/idl/dustem_get_filter_name.pro old mode 100644 new mode 100755 index eb84b0c..eb84b0c --- a/src/idl/dustem_get_filter_name.pro +++ b/src/idl/dustem_get_filter_name.pro diff --git a/src/idl/dustem_grains_colors.pro b/src/idl/dustem_grains_colors.pro old mode 100644 new mode 100755 index ca0f4dc..ca0f4dc --- a/src/idl/dustem_grains_colors.pro +++ b/src/idl/dustem_grains_colors.pro diff --git a/src/idl/dustem_greybody_mpfit.pro b/src/idl/dustem_greybody_mpfit.pro old mode 100644 new mode 100755 index 3bd4639..3bd4639 --- a/src/idl/dustem_greybody_mpfit.pro +++ b/src/idl/dustem_greybody_mpfit.pro diff --git a/src/idl/dustem_init.pro b/src/idl/dustem_init.pro old mode 100644 new mode 100755 index 80fa7e9..ae051fd --- a/src/idl/dustem_init.pro +++ b/src/idl/dustem_init.pro @@ -97,9 +97,14 @@ if keyword_set(pol) then begin ext: ptr_new(), $ polext: ptr_new(), $ polsed: ptr_new(), $ - polfrac: ptr_new() $ + polfrac: ptr_new(), $ ; after this line you can put the new variables to fit + qsed: ptr_new(), $ + used: ptr_new(), $ + qext: ptr_new(), $ + uext: ptr_new() $ } - rchi2_weight = {sed: 0.,ext: 0.,polext: 0.,polsed: 0.,polfrac:0.} +; rchi2_weight = {sed: 0.,ext: 0.,polext: 0.,polsed: 0.,polfrac:0.} ;old line + rchi2_weight = {sed: 0.,ext: 0.,polext: 0.,polsed: 0.,polfrac:0.,qsed:0.,used:0.,qext:0.,uext:0.} endif else begin defsysv, '!dustem_data', { $ ;Data to fit @@ -152,10 +157,23 @@ defsysv, '!dustem_params', ptr_new() ;Contains the values of all Desert Model pa ; 2:call to dustem_create_ionfrac with the SIZE_xxx.DAT files ;ENDIF + + +;WE DO NOT NEED THESE VARIABLES ANYMORE BUT HAVEN'T TESTED YET defsysv, '!dustem_idl_continuum', 0. defsysv, '!dustem_idl_freefree', 0. defsysv, '!dustem_idl_synchrotron', 0. +; +; +; ;a new plugin will have to be added to this list +; stt={synchrotron:ptr_new(),free_free:ptr_new(), nir_continuum:ptr_new(), grey_body:ptr_new()} +; defsysv, '!dustem_plugins', ptr_new(stt) + + + + + defsysv,'!dustem_filters',ptr_new() ;filter information (filled by dustem_filter_init.pro) ;; IDL> help,*!dustem_filters,/str ;; ** Structure <1b95608>, 17 tags, length=8232, data length=8118, refs=1: @@ -237,7 +255,9 @@ IF not keyword_set(dir) THEN BEGIN ; 'VERSTRAETE': dir_in=!dustem_wrap_soft_dir+'/Data/d_3.5/' 'VERSTRAETE': dir_in=!dustem_wrap_soft_dir+'/Data/LV_DAT/' 'WEB3p8': dir_in=!dustem_soft_dir - ELSE: dir_in=!dustem_wrap_soft_dir+'/Data/les_DAT/' + ;'WEB4p3': dir_in=!dustem_soft_dir ; I ADDED THIS + ;'WEB4p3': dir_in='/Users/ilyeschoubani/Soft_Librairies/DUSTEM/Data/les_DAT/' ;dir_in=!dustem_soft_dir+ '/Data/' ; I added this + ELSE: dir_in=!dustem_wrap_soft_dir+'/Data/les_DAT/';!dustem_wrap_soft_dir+'/Data/les_DAT/';I CHANGED THIS!!!! ENDCASE ENDIF ELSE BEGIN dir_in=dir @@ -270,7 +290,7 @@ CASE !dustem_which OF spawn,'rm -rf '+!dustem_res+'/les_RES' ENDIF END - 'WEB3p8':BEGIN + 'WEB3p8':BEGIN ; I CHANGED THIS IF file_test(!dustem_dat,/dir) THEN BEGIN spawn,'rm -rf '+!dustem_dat+'/data' spawn,'rm -rf '+!dustem_dat+'/hcap' @@ -295,7 +315,7 @@ CASE !dustem_which OF spawn,'mkdir '+!dustem_res+'/les_RES' ENDIF END - 'WEB3p8':BEGIN + 'WEB3p8':BEGIN ; IN CHANGED THIS AS WELL IF file_test(!dustem_dat,/dir) THEN BEGIN spawn,'mkdir '+!dustem_dat+'/data' spawn,'mkdir '+!dustem_dat+'/hcap' @@ -326,7 +346,7 @@ ENDIF dustem_filter_init,dir=dir ;=== test plugins -plugins_desc_file=getenv('DUSTEM_SOFT_DIR')+'plugins_description.xcat' +plugins_desc_file=getenv('DUSTEM_WRAP_SOFT_DIR')+'/plugins_description.xcat' ;added a slash and changed DUSTEM_SOFT_DIR to DUSTEM_WRAP_SOFT_DIR plugins_st=read_xcat(plugins_desc_file,/silent) Nplugins=n_elements(plugins_st) FOR i=0L,Nplugins-1 DO BEGIN diff --git a/src/idl/dustem_init_fixed_params.pro b/src/idl/dustem_init_fixed_params.pro old mode 100644 new mode 100755 index 939145b..32e4a92 --- a/src/idl/dustem_init_fixed_params.pro +++ b/src/idl/dustem_init_fixed_params.pro @@ -24,7 +24,8 @@ dustem_set_func_ind,fpd,fiv ind=where(fpd NE '',count) IF count NE 0 THEN BEGIN dustem_set_params,[fiv] - dustem_create_functions,[fiv]/(*(*!dustem_fit).param_init_values) + ;dustem_create_functions,[fiv]/(*(*!dustem_fit).param_init_values) + dustem_activate_plugins,[fiv]/(*(*!dustem_fit).param_init_values) dustem_set_params,[fiv] ENDIF diff --git a/src/idl/dustem_init_parinfo.pro b/src/idl/dustem_init_parinfo.pro old mode 100644 new mode 100755 index 75168b1..6761cd8 --- a/src/idl/dustem_init_parinfo.pro +++ b/src/idl/dustem_init_parinfo.pro @@ -4,6 +4,8 @@ PRO dustem_init_parinfo,pd,iv, $ relstep=relstep,step=step (*!dustem_fit).param_descs=ptr_new(pd) +;A chance to include a plugin dependency here since pd is not really used in this routine + (*!dustem_fit).param_init_values=ptr_new(iv) ;stop dustem_set_func_ind,pd,iv diff --git a/src/idl/dustem_init_st.pro b/src/idl/dustem_init_st.pro old mode 100644 new mode 100755 index 236c8a2..236c8a2 --- a/src/idl/dustem_init_st.pro +++ b/src/idl/dustem_init_st.pro diff --git a/src/idl/dustem_initialize_sed.pro b/src/idl/dustem_initialize_sed.pro old mode 100644 new mode 100755 index 14dac54..14dac54 --- a/src/idl/dustem_initialize_sed.pro +++ b/src/idl/dustem_initialize_sed.pro diff --git a/src/idl/dustem_instru2filters.pro b/src/idl/dustem_instru2filters.pro old mode 100644 new mode 100755 index 03ecf88..03ecf88 --- a/src/idl/dustem_instru2filters.pro +++ b/src/idl/dustem_instru2filters.pro diff --git a/src/idl/dustem_mpfit_data.pro b/src/idl/dustem_mpfit_data.pro old mode 100644 new mode 100755 index d3fabd5..d3fabd5 --- a/src/idl/dustem_mpfit_data.pro +++ b/src/idl/dustem_mpfit_data.pro diff --git a/src/idl/dustem_mpfit_run.pro b/src/idl/dustem_mpfit_run.pro old mode 100644 new mode 100755 index 028b192..c3a385d --- a/src/idl/dustem_mpfit_run.pro +++ b/src/idl/dustem_mpfit_run.pro @@ -47,45 +47,52 @@ IF keyword_set(help) THEN BEGIN ENDIF p_dim=p_min*(*(*!dustem_fit).param_init_values) -;Run dustem with as an interface to mpfitfun -;==== JPB: not sure why this is required since plugins will be called in dustem_create_functions below ... -;IF !dustem_idl_continuum THEN cont=dustem_create_continuum() -;IF !dustem_idl_freefree THEN freefree=dustem_create_freefree() -;IF !dustem_idl_synchrotron THEN synchrotron=dustem_create_synchrotron() - -;CALL THE DUSTEM_CREATE FUNCTIONS -dustem_create_functions,p_dim/(*(*!dustem_fit).param_init_values),cont=cont,freefree=freefree,synchrotron=synchrotron,res=res - -;if ISRF has been modified and IONFRAC has not been modified, then call dustem_create_ionfrac -;NF on October 2009 : handling of DUSTEM_CREATE_IONFRAC has been changed -;this call only if IONFRACPAH master-keyword in GRAIN.DAT -;Removed for now (JPB). Use of ionfrac should be fully revisited. IF !run_ionfrac gt 0. THEN toto = dustem_create_ionfrac() + ;RUN THE MODEL AND GET THE SPECTRUM st = dustem_run(p_dim) st_model=dustem_read_all(!dustem_soft_dir) +dustem_activate_plugins,p_dim/(*(*!dustem_fit).param_init_values),res=res,st + + chi2_sed = 0 chi2_ext = 0 chi2_polext = 0 chi2_polsed = 0 -chi2_polfrac = 0 +chi2_polfrac = 0 +chi2_qsed =0 +chi2_used =0 +chi2_qext =0 +chi2_uext =0 rchi2_sed = 0 rchi2_ext = 0 rchi2_polext = 0 rchi2_polsed = 0 rchi2_polfrac = 0 +rchi2_qsed =0 +rchi2_used =0 +rchi2_qext =0 +rchi2_uext =0 wrchi2_sed = 0 wrchi2_ext = 0 wrchi2_polext = 0 wrchi2_polsed = 0 wrchi2_polfrac = 0 +wrchi2_qsed =0 +wrich2_used =0 +wrchi2_qext =0 +wrich2_uext =0 n_sed = 0 n_ext = 0 n_polext = 0 n_polsed = 0 n_polfrac = 0 +n_qsed =0 +n_used =0 +n_qext =0 +n_uext =0 win = 0 @@ -104,8 +111,10 @@ FOR i_tag=0,count_data_tag-1 DO BEGIN CASE tagnames(ind_data_tag(i_tag)) OF 'SED' : BEGIN - - dustem_sed = dustem_compute_sed(p_dim,st,cont=cont,freefree=freefree,synchrotron=synchrotron) + + ;PLUGIN IS ADDED INSIDE DUSTEM_COMPUTE_SED + + dustem_sed = dustem_compute_sed(p_dim,st);dustem_compute_sed(p_dim,st,cont=cont,freefree=freefree,synchrotron=synchrotron) chi2_sed = total(((*!dustem_data.sed).values-dustem_sed)^2/(*!dustem_data.sed).sigma^2) n_sed = n_elements((*!dustem_data.sed).values) rchi2_sed = chi2_sed / n_sed @@ -126,8 +135,17 @@ FOR i_tag=0,count_data_tag-1 DO BEGIN ; Plot if needed IF !dustem_show_plot NE 0 THEN BEGIN - window,0 - dustem_plot_fit_sed,st,dustem_sed,cont,freefree,synchrotron,_extra=extra,res=p_min*(*(*!dustem_fit).param_init_values),chi2=(*!dustem_fit).chi2,rchi2=(*!dustem_fit).rchi2 + ;title='DUSTEM WRAP('+strtrim(string(win),2)+')' + window,win,title='DUSTEM WRAP (SED)' + + + ;cgwindow,WMULTI=[2,2,1],/CURRENT + + + ;dustem_plot_fit_sed,st,dustem_sed,cont,freefree,synchrotron,_extra=extra,res=p_min*(*(*!dustem_fit).param_init_values),chi2=(*!dustem_fit).chi2,rchi2=(*!dustem_fit).rchi2 + dustem_plot_fit_sed,st,dustem_sed,_extra=extra,res=p_min*(*(*!dustem_fit).param_init_values),chi2=(*!dustem_fit).chi2,rchi2=(*!dustem_fit).rchi2 + + ;stop ENDIF @@ -136,8 +154,17 @@ FOR i_tag=0,count_data_tag-1 DO BEGIN END 'EXT' : BEGIN - + + ;ADDING PLUGIN TO SPECTRUM---------------- + ;if n_tags(!dustem_data.ext) gt 1 then begin + for i=0L,n_tags(*!dustem_scope)-1 do begin + if total(strsplit((*!dustem_scope).(i),'+',/extract) eq 'ADD_EXT') then st.ext.ext_tot+=(*(*!dustem_plugin).(i)) + endfor + ;endif + ;------------------------------------------ + dustem_ext = interpol(st.ext.ext_tot,st.ext.wav,(*!dustem_data.ext).wav) + chi2_ext = total(((*!dustem_data.ext).values-dustem_ext)^2/(*!dustem_data.ext).sigma^2) n_ext = n_elements((*!dustem_data.ext).values) rchi2_ext = chi2_ext / n_ext @@ -154,7 +181,7 @@ FOR i_tag=0,count_data_tag-1 DO BEGIN yr=[1.e-26,1.e-21] dustem_plot_ext,st,yr=yr,/ysty,xr=xr,/xsty,ps=filename,win=win,mergePAH=mergePAH,/donotclose,multi=1 dustem_plot_ext,st,yr=yr,/ysty,xr=xr,/xsty,ps=filename,win=win,mergePAH=mergePAH,multi=2 - + win+=1 ;dustem_plot_ext,st,/UV,yr=[0,2.5],/ysty,xr=[0,10],/xsty,win=win xr=[0.2,10] @@ -179,10 +206,10 @@ FOR i_tag=0,count_data_tag-1 DO BEGIN endif IF !run_lin then begin - - dustem_polext = interpol(st.polext.ext_tot,st.polext.wav,(*!dustem_data.polext).wav) + + dustem_polext = dustem_compute_polext(p_dim,st,dustem_qext,dustem_uext,Q_ext,U_ext) chi2_polext = total(((*!dustem_data.polext).values-dustem_polext)^2/(*!dustem_data.polext).sigma^2) - n_polext = n_elements((*!dustem_data.polext).values) + n_polext = n_elements((*!dustem_data.polext).values) rchi2_polext = chi2_polext / n_polext wrchi2_polext = rchi2_polext * !fit_rchi2_weight.polext print,"chi2 POLEXT = ",chi2_polext," rchi2 POLEXT = ",rchi2_polext;," weighted rchi2 POLEXT=",wrchi2_polext @@ -227,21 +254,22 @@ FOR i_tag=0,count_data_tag-1 DO BEGIN ; Plot if needed IF !dustem_show_plot NE 0 THEN BEGIN - ; Polarization fraction in the UV-IR - win+=1 - - dustem_plot_polar,st,aligned=st_model.align.grains.aligned,yr=[0,0.15],/ysty,xr=[0.1,4],/xsty,win=win - +; ; Polarization fraction in the UV-IR +; win+=1 +; +; dustem_plot_polar,st,p_dim,aligned=st_model.align.grains.aligned,yr=[0,0.15],/ysty,xr=[0.1,50],/xsty,win=win;multi=0,ps=filename +; ; ; Polarisation curve (Serkowski) - win+=1 - xr=[0.1,50] - yr=[5e-25,5e-23] - dustem_plot_polar,st,aligned=st_model.align.grains.aligned,/UV,yr=yr,/ysty,xr=xr,/xsty,ps=filename,win=win,cont=cont,freefree=freefree,synchrotron=synchrotron,/donotclose,multi=1 - dustem_plot_polar,st,aligned=st_model.align.grains.aligned,/UV,yr=yr,/ysty,xr=xr,/xsty,ps=filename,win=win,cont=cont,freefree=freefree,synchrotron=synchrotron,multi=2 + win+=1 + ;xr=[0.3,1e4] + xr=[1e-4,3.5] + yr=[1e-30,5e-24] + dustem_plot_polar,st,p_dim,aligned=st_model.align.grains.aligned,/UV,yr=yr,/ysty,xr=xr,/xsty,ps=filename,win=win,/donotclose,multi=1 + dustem_plot_polar,st,p_dim,aligned=st_model.align.grains.aligned,/UV,yr=yr,/ysty,xr=xr,/xsty,ps=filename,win=win,multi=2 - win+=1 - dustem_plot_fpol,win=win,xr=[10,1000],yr=[0,1.1] - +; win+=1 +; dustem_plot_fpol,win=win,xr=[10,1000],yr=[0,1.1] +; ENDIF @@ -253,50 +281,60 @@ FOR i_tag=0,count_data_tag-1 DO BEGIN END - 'POLFRAC': BEGIN - - IF !run_lin then begin - - dustem_polsed = dustem_compute_polsed(p_dim,st.polsed,cont=cont,freefree=freefree,synchrotron=synchrotron) - dustem_sed_tmp = dustem_compute_sed(p_dim,st,cont=cont,freefree=freefree,synchrotron=synchrotron) - dustem_sed = dustem_polsed - ind_filt=where((*!dustem_data.polsed).filt_names NE 'SPECTRUM',count_filt) - for i = 0, count_filt-1 do begin - j=where((*!dustem_data.polsed).filt_names(ind_filt(i)) eq (*!dustem_data.sed).filt_names,count) - if count eq 1 then dustem_sed(i) = dustem_sed_tmp(j(0)) - endfor - dustem_polfrac = dustem_polsed/dustem_sed - - ; We normalize at 353GHz - ;x=min(((*!dustem_data.polfrac).wav-850)^2,j353) - ;dustem_polfrac = dustem_polfrac/dustem_polfrac(j353)*(*!dustem_data.polfrac).values(j353) - - chi2_polfrac = total(((*!dustem_data.polfrac).values-dustem_polfrac)^2/(*!dustem_data.polfrac).sigma^2) - n_polfrac = n_elements((*!dustem_data.polfrac).values) - rchi2_polfrac = chi2_polfrac / n_polfrac - wrchi2_polfrac = rchi2_polfrac * !fit_rchi2_weight.polfrac - print,"chi2 POLFRAC = ",chi2_polfrac," rchi2 POLFRAC = ",rchi2_polfrac;," weighted rchi2 POLFRAC=",wrchi2_polfrac - ;print,"chi2 per wl: ",((*!dustem_data.polfrac).values-dustem_polfrac)^2/(*!dustem_data.polfrac).sigma^2 - - dustem_out = [ dustem_out, dustem_polfrac ] - - ; Plot if needed - IF !dustem_show_plot NE 0 THEN BEGIN - - ; Also show prediction for polarized P/I - win+=1 - dustem_plot_polar,st,aligned=st_model.align.grains.aligned,/Pfrac,win=win,cont=cont,freefree=freefree,synchrotron=synchrotron,yr=[0,0.25],/ysty,xr=[10,5d3] - - ENDIF - - ENDIF - - END - +;USE OF POLFRAC DEPRECATED--------------------------------------- + +; 'POLFRAC': BEGIN +; +; ;PLUGIN IS ADDED INSIDE DUSTEM_COMPUTE_POLSED AND DUSTEM_COMPUTE_SED +; +; IF !run_lin then begin +; +; dustem_polsed = dustem_compute_polsed(p_dim,st);dustem_compute_polsed(p_dim,st.polsed,cont=cont,freefree=freefree,synchrotron=synchrotron) +; dustem_sed_tmp = dustem_compute_sed(p_dim,st);dustem_compute_sed(p_dim,st,cont=cont,freefree=freefree,synchrotron=synchrotron) +; dustem_sed = dustem_polsed +; ind_filt=where((*!dustem_data.polsed).filt_names NE 'SPECTRUM',count_filt) +; for i = 0, count_filt-1 do begin +; j=where((*!dustem_data.polsed).filt_names(ind_filt(i)) eq (*!dustem_data.sed).filt_names,count) +; if count eq 1 then dustem_sed(i) = dustem_sed_tmp(j(0)) +; endfor +; dustem_polfrac = dustem_polsed/dustem_sed +; +; ; We normalize at 353GHz +; ;x=min(((*!dustem_data.polfrac).wav-850)^2,j353) +; ;dustem_polfrac = dustem_polfrac/dustem_polfrac(j353)*(*!dustem_data.polfrac).values(j353) +; +; chi2_polfrac = total(((*!dustem_data.polfrac).values-dustem_polfrac)^2/(*!dustem_data.polfrac).sigma^2) +; n_polfrac = n_elements((*!dustem_data.polfrac).values) +; rchi2_polfrac = chi2_polfrac / n_polfrac +; wrchi2_polfrac = rchi2_polfrac * !fit_rchi2_weight.polfrac +; print,"chi2 POLFRAC = ",chi2_polfrac," rchi2 POLFRAC = ",rchi2_polfrac;," weighted rchi2 POLFRAC=",wrchi2_polfrac +; ;print,"chi2 per wl: ",((*!dustem_data.polfrac).values-dustem_polfrac)^2/(*!dustem_data.polfrac).sigma^2 +; +; dustem_out = [ dustem_out, dustem_polfrac ] +; +; ; Plot if needed +; IF !dustem_show_plot NE 0 THEN BEGIN +; +; ; Also show prediction for polarized P/I +; win+=1 +; dustem_plot_polar,st,aligned=st_model.align.grains.aligned,/Pfrac,win=win,yr=[0,0.25],/ysty,xr=[10,5d3];dustem_plot_polar,st,aligned=st_model.align.grains.aligned,/Pfrac,win=win,cont=cont,freefree=freefree,synchrotron=synchrotron,yr=[0,0.25],/ysty,xr=[10,5d3] +; +; ENDIF +; +; ENDIF +; +; END + + +;----------------------------------------------------------------- 'POLSED': BEGIN + + ;PLUGIN IS ADDED INSIDE DUSTEM_COMPUTE_SED + IF !run_lin THEN BEGIN - dustem_polsed = dustem_compute_polsed(p_dim,st,cont=cont,freefree=freefree,synchrotron=synchrotron) + dustem_polsed = dustem_compute_polsed(p_dim,st,dustem_qsed,dustem_used,Q_sed,U_sed);dustem_compute_polsed(p_dim,st,cont=cont,freefree=freefree,synchrotron=synchrotron) + chi2_polsed = total(((*!dustem_data.polsed).values-dustem_polsed)^2/(*!dustem_data.polsed).sigma^2) n_polsed = n_elements((*!dustem_data.polsed).values) rchi2_polsed = chi2_polsed / n_polsed @@ -304,20 +342,229 @@ FOR i_tag=0,count_data_tag-1 DO BEGIN message,"chi2 POLSED = "+strtrim(chi2_polsed,2)+" rchi2 POLSED = "+strtrim(rchi2_polsed,2),/continue;," weighted rchi2 POLSED=",wrchi2_polsed print,"chi2 per wl: ",((*!dustem_data.polsed).values-dustem_polsed)^2/(*!dustem_data.polsed).sigma^2 ;print,"SNR per wl: ",(*!dustem_data.polsed).values/(*!dustem_data.polsed).sigma - - dustem_out = [ dustem_out, dustem_polsed ] + + dustem_out = [ dustem_out, dustem_polsed ] ; classic command + ;----------------------------------------------- + ; Plot if needed IF !dustem_show_plot NE 0 THEN BEGIN win+=1 - xr=[10,5e3] +; + xr=[10,8e3] yr=[1e-34,1e-28] - dustem_plot_polar,st,aligned=st_model.align.grains.aligned,/SED,ps=filename,win=win,cont=cont,freefree=freefree,synchrotron=synchrotron,xr=xr,yr=yr,/xsty,/donotclose,multi=1 - dustem_plot_polar,st,aligned=st_model.align.grains.aligned,/SED,ps=filename,win=win,cont=cont,freefree=freefree,synchrotron=synchrotron,xr=xr,yr=yr,/xsty,multi=2 + + + dustem_plot_polar,st,p_dim,aligned=st_model.align.grains.aligned,/SED,ps=filename,win=win,cont=cont,freefree=freefree,synchrotron=synchrotron,xr=xr,yr=yr,/xsty,/donotclose,multi=1 + dustem_plot_polar,st,p_dim,aligned=st_model.align.grains.aligned,/SED,ps=filename,win=win,cont=cont,freefree=freefree,synchrotron=synchrotron,xr=xr,yr=yr,/xsty,multi=2 + + + ENDIF ENDIF END - - ELSE : stop + + 'QSED': BEGIN + + ;PLUGIN IS ADDED INSIDE DUSTEM_COMPUTE_SED + chi2_qsed =total(((*!dustem_data.qsed).values-dustem_qsed)^2/(*!dustem_data.qsed).sigma^2) + n_qsed = n_elements((*!dustem_data.qsed).values) + rchi2_qsed = chi2_qsed / n_qsed + wrchi2_qsed = rchi2_qsed * !fit_rchi2_weight.qsed + dustem_out = [ dustem_out, dustem_qsed ] ; classic command + message,"chi2 QSED = "+strtrim(chi2_qsed,2)+" rchi2 QSED = "+strtrim(rchi2_qsed,2),/continue;," weighted rchi2 POLSED=",wrchi2_polsed + print,"chi2 per wl: ",((*!dustem_data.qsed).values-dustem_qsed)^2/(*!dustem_data.qsed).sigma^2 + + + + if !dustem_show_plot NE 0 then begin + fact = (3.e10/(1.e-4*(st.polsed.wav)))/1.d40 + fact1 = (3.e10/(1.e-4*((*!dustem_data.qsed).wav)))/1.d40 ; for data plotting + + + win+=1 + window ,win ,title='DUSTEM WRAP (QSED)' + titstq='Stokes Q Polarization Intensity' + ytitstq=textoidl('\nuQ_\nu/N_H (W/m^2/sr/H)') + xtit=textoidl('\lambda (\mum)') + xr=[10,8e3] + normpol=Q_sed*fact + normpol1=dustem_qsed*fact1 + ;normpol1=(*!dustem_data.qsed).values*fact1 + + yr=[1e-34,1e-28] + indq=where(Q_sed lt 0, countq) + ylog=1 + if countq ne 0 then begin + ylog=0 + yr=[-5e-31,5e-31] + endif + + + cgplot,st.polsed.wav,Q_sed*fact,xtit='',ytit=ytitstq,tit=titstq,ylog=ylog,/xlog,xr=xr,yr=yr,/ys,/xs,position=[0.17,0.35,0.93,0.93],xtickformat='(A1)' + cgoplot,st.polsed.wav,Q_sed*fact,color='black' + cgoplot,(*!dustem_data.qsed).wav,(*!dustem_data.qsed).values*fact1,color='Tomato',psym=16,symsize=1,thick=2 + err_bar,(*!dustem_data.qsed).wav,(*!dustem_data.qsed).values*fact1,yrms=3.*((*!dustem_data.qsed).sigma)/2.*fact1,color=cgColor('Tomato') + cgoplot,(*!dustem_data.qsed).wav,dustem_qsed*fact1,psym=6,color='red',symsize=2 + + cgplot,st.polsed.wav,Q_sed*fact/normpol,xtit=xtit,ytit='Normalized',tit='',/xlog,xr=xr,/ys,/xs,yr=[0,2],ylog=0,position=[0.17,0.14,0.93,0.35],/noerase,yticks=2,ymino=5,xticklen=0.1 + cgoplot,st.polsed.wav,Q_sed*fact/normpol,color='black' + cgoplot,(*!dustem_data.qsed).wav,(*!dustem_data.qsed).values*fact1/normpol1,color='Tomato',psym=16,symsize=1,thick=2 + err_bar,(*!dustem_data.qsed).wav,(*!dustem_data.qsed).values*fact1/normpol1,yrms=3.*((*!dustem_data.qsed).sigma)/2.*fact1/normpol1,color=cgColor('Tomato') + + endif + + END + + 'USED': BEGIN + + ;PLUGIN IS ADDED INSIDE DUSTEM_COMPUTE_SED + chi2_used =total(((*!dustem_data.used).values-dustem_used)^2/(*!dustem_data.used).sigma^2) + n_used = n_elements((*!dustem_data.used).values) + rchi2_used = chi2_used / n_used + wrchi2_used = rchi2_used * !fit_rchi2_weight.used + dustem_out = [ dustem_out, dustem_used] ; classic command + message,"chi2 USED = "+strtrim(chi2_used,2)+" rchi2 USED = "+strtrim(rchi2_used,2),/continue;," weighted rchi2 POLSED=",wrchi2_polsed + print,"chi2 per wl: ",((*!dustem_data.used).values-dustem_used)^2/(*!dustem_data.used).sigma^2 + + + if !dustem_show_plot ne 0 then begin + fact = (3.e10/(1.e-4*(st.polsed.wav)))/1.d40 + fact1 = (3.e10/(1.e-4*((*!dustem_data.used).wav)))/1.d40 ; for data plotting + + + win+=1 + window ,win ,title='DUSTEM WRAP (USED)' + titstu='Stokes U Polarization Intensity' + ytitstu=textoidl('\nuU_\nu/N_H (W/m^2/sr/H)') + xtit=textoidl('\lambda (\mum)') + xr=[10,8e3] + normpol2=U_sed*fact + normpol3=dustem_used*fact1 + ;yr=[min(normpol2)-min(normpol2)/10,max(normpol2)+max(normpol2)*10] + + yr=[1e-34,1e-28] + indu=where(U_sed lt 0, countu) + ylog=1 + if countu ne 0 then begin + ylog=0 + yr=[-5e-31,5e-31] + endif + + cgplot,st.polsed.wav,U_sed*fact,xtit='',ytit=ytitstu,tit=titstu,ylog=ylog,/xlog,xr=xr,yr=yr,/ys,/xs,position=[0.17,0.35,0.93,0.93],xtickformat='(A1)',color='black' + cgoplot,st.polsed.wav,U_sed*fact,color='black' + cgoplot,(*!dustem_data.used).wav,(*!dustem_data.used).values*fact1,color='Teal',psym=16,symsize=1,thick=2 + err_bar,(*!dustem_data.used).wav,(*!dustem_data.used).values*fact1,yrms=3.*((*!dustem_data.used).sigma)/2.*fact1,color=cgColor('Teal') + cgoplot,(*!dustem_data.used).wav,dustem_used*fact1,psym=6,color='red',symsize=2 + + + + cgplot,st.polsed.wav,U_sed*fact/normpol2,xtit=xtit,ytit='Normalized',tit='',/xlog,xr=xr,/ys,/xs,yr=[0,2],ylog=0,position=[0.17,0.14,0.93,0.35],/noerase,yticks=2,ymino=5,xticklen=0.1 + cgoplot,st.polsed.wav,U_sed*fact/normpol2,color='black' + cgoplot,(*!dustem_data.used).wav,(*!dustem_data.used).values*fact1/normpol3,color='Teal',psym=16,symsize=1,thick=2 + err_bar,(*!dustem_data.used).wav,(*!dustem_data.used).values*fact1/normpol3,yrms=3.*((*!dustem_data.used).sigma)/2.*fact1/normpol3,color=cgColor('Teal') + + ;cgwindow, 'plot', + + endif + END + + + + + 'QEXT': BEGIN ; Q - EXTINCTION CROSS SECTION + + chi2_qext =total(((*!dustem_data.qext).values-dustem_qext)^2/(*!dustem_data.qext).sigma^2) + n_qext = n_elements((*!dustem_data.qext).values) + rchi2_qext = chi2_qext / n_qext + wrchi2_qext = rchi2_qext * !fit_rchi2_weight.qext + dustem_out = [ dustem_out, dustem_qext] ; classic command + message,"chi2 QEXT = "+strtrim(chi2_qext,2)+" rchi2 QEXT = "+strtrim(rchi2_qext,2),/continue;," weighted rchi2 POLSED=",wrchi2_polsed + print,"chi2 per wl: ",((*!dustem_data.qext).values-dustem_qext)^2/(*!dustem_data.qext).sigma^2 + if !dustem_show_plot ne 0 then begin + + win+=1 + window ,win ,title='DUSTEM WRAP (QEXT)' + titqex='Q-polarized Cross-section' + ytitqex=textoidl('\sigma_{Q}/N_H (cm^2/H)') + xtit=textoidl('\lambda^{-1} (\mum^{-1})') + ;xr=[0.3,1e4] + xr=[1e-4,3.5] + + yr=[1e-34,5e-24] + indqex=where(Q_ext lt 0, countqex) + ylog=1 + if countqex ne 0 then begin + ylog=0 + yr=[-9e-27,5e-27] + endif + normpol = st.polext.ext_tot * 0. + 1.d21 + cgplot,1/st.polext.wav,Q_ext,xtit='',ytit=ytitqex,tit=titqex,ylog=ylog,/xlog,xr=xr,yr=yr,/ys,/xs,position=[0.17,0.35,0.93,0.93],xtickformat='(A1)',color='black' + cgoplot,1/st.polext.wav,Q_ext/normpol,color='black' + cgoplot,1/(*!dustem_data.qext).wav,(*!dustem_data.qext).values/normpol,color='Indian Red',psym=16,symsize=1,thick=2 + err_bar,1/(*!dustem_data.qext).wav,(*!dustem_data.qext).values/normpol,yrms=3.*((*!dustem_data.qext).sigma)/2/normpol,color=cgColor('Indian Red') + cgoplot,1/(*!dustem_data.qext).wav,dustem_qext/normpol,psym=6,color='red',symsize=2 + + + + cgplot,1/st.polsed.wav,Q_ext/Q_ext,xtit=xtit,ytit='Normalized',tit='',/xlog,xr=xr,/ys,/xs,yr=[0,2],ylog=0,position=[0.17,0.14,0.93,0.35],/noerase,yticks=2,ymino=5,xticklen=0.1 + cgoplot,1/st.polsed.wav,Q_ext/Q_ext,color='black' + cgoplot,1/(*!dustem_data.qext).wav,(*!dustem_data.qext).values/dustem_qext,color='Indian Red',psym=16,symsize=1,thick=2 + err_bar,1/(*!dustem_data.qext).wav,(*!dustem_data.qext).values/dustem_qext,yrms=3.*((*!dustem_data.qext).sigma)/2.,color=cgColor('Indian Red') + + endif + + END +; + 'UEXT': BEGIN + + + chi2_uext =total(((*!dustem_data.uext).values-dustem_uext)^2/(*!dustem_data.uext).sigma^2) + n_uext = n_elements((*!dustem_data.uext).values) + rchi2_uext = chi2_uext / n_uext + wrchi2_uext = rchi2_uext * !fit_rchi2_weight.uext + dustem_out = [ dustem_out, dustem_uext] ; classic command + message,"chi2 UEXT = "+strtrim(chi2_uext,2)+" rchi2 UEXT = "+strtrim(rchi2_uext,2),/continue;," weighted rchi2 POLSED=",wrchi2_polsed + print,"chi2 per wl: ",((*!dustem_data.uext).values-dustem_uext)^2/(*!dustem_data.uext).sigma^2 + if !dustem_show_plot ne 0 then begin + + win+=1 + window ,win ,title='DUSTEM WRAP (UEXT)' + tituex='U-polarized Cross-section' + ytituex=textoidl('\sigma_{U}/N_H (cm^2/H)') + xtit=textoidl('\lambda^{-1} (\mum^{-1})') + ;xr=[0.3,1e4] + xr=[1e-4,3.5] + + yr=[1e-34,5e-24] + induex=where(U_ext lt 0, countuex) + ylog=1 + if countuex ne 0 then begin + ylog=0 + yr=[-9e-27,5e-27] + endif + normpol = st.polext.ext_tot * 0. + 1.d21 + cgplot,1/st.polext.wav,U_ext,xtit='',ytit=ytituex,tit=tituex,ylog=ylog,/xlog,xr=xr,yr=yr,/ys,/xs,position=[0.17,0.35,0.93,0.93],xtickformat='(A1)',color='black' + cgoplot,1/st.polext.wav,U_ext/normpol,color='black' + cgoplot,1/(*!dustem_data.uext).wav,(*!dustem_data.uext).values/normpol,color='Steel Blue',psym=16,symsize=1,thick=2 + err_bar,1/(*!dustem_data.uext).wav,(*!dustem_data.uext).values/normpol,yrms=3.*((*!dustem_data.uext).sigma)/2/normpol,color=cgColor('Steel Blue') + cgoplot,1/(*!dustem_data.uext).wav,dustem_uext/normpol,psym=6,color='red',symsize=2 + + + + cgplot,1/st.polsed.wav,U_ext/U_ext,xtit=xtit,ytit='Normalized',tit='',/xlog,xr=xr,/ys,/xs,yr=[0,2],ylog=0,position=[0.17,0.14,0.93,0.35],/noerase,yticks=2,ymino=5,xticklen=0.1 + cgoplot,1/st.polsed.wav,U_ext/U_ext,color='black' + cgoplot,1/(*!dustem_data.uext).wav,(*!dustem_data.uext).values/dustem_uext,color='Steel Blue',psym=16,symsize=1,thick=2 + err_bar,1/(*!dustem_data.uext).wav,(*!dustem_data.uext).values/dustem_uext,yrms=3.*((*!dustem_data.uext).sigma)/2/normpol,color=cgColor('Steel Blue') + + endif + + + + + END + + + ELSE : stop ENDCASE @@ -344,23 +591,49 @@ if !fit_rchi2_weight.polext ne 0 then begin total_rchi2 += rchi2_polext endif if !fit_rchi2_weight.polsed ne 0 then begin - total_n += n_polsed - total_chi2 += chi2_polsed - total_rchi2 += rchi2_polsed + total_n += n_polsed + total_chi2 += chi2_polsed + total_rchi2 += rchi2_polsed endif if !fit_rchi2_weight.polfrac ne 0 then begin total_n += n_polfrac total_chi2 += chi2_polfrac total_rchi2 += rchi2_polfrac endif +if !fit_rchi2_weight.qsed ne 0 then begin + total_n += n_qsed + total_chi2 += chi2_qsed + total_rchi2 += rchi2_qsed +endif +if !fit_rchi2_weight.used ne 0 then begin + total_n += n_used + total_chi2 += chi2_used + total_rchi2 += rchi2_used endif +if !fit_rchi2_weight.qext ne 0 then begin + total_n += n_qext + total_chi2 += chi2_qext + total_rchi2 += rchi2_qext +endif +if !fit_rchi2_weight.uext ne 0 then begin + total_n += n_uext + total_chi2 += chi2_uext + total_rchi2 += rchi2_uext +endif + +endif + total_wchi2 = chi2_ext * !fit_rchi2_weight.ext $ + chi2_sed * !fit_rchi2_weight.sed if !run_pol then begin total_wchi2 += chi2_polext * !fit_rchi2_weight.polext $ + chi2_polsed * !fit_rchi2_weight.polsed $ - + chi2_polfrac * !fit_rchi2_weight.polfrac + + chi2_polfrac * !fit_rchi2_weight.polfrac $ + + chi2_qsed * !fit_rchi2_weight.qsed $ + + chi2_used * !fit_rchi2_weight.used $ + + chi2_qext * !fit_rchi2_weight.qext $ + + chi2_uext * !fit_rchi2_weight.uext endif message,'======================================================================',/continue @@ -373,7 +646,7 @@ if !run_pol then print,"Weights",!fit_rchi2_weight.ext,!fit_rchi2_weight.sed,!f else print,"Weights",!fit_rchi2_weight.ext,!fit_rchi2_weight.sed print,"Mean weighted reduced chi2 = ", total_wchi2/(total_n-DOF) print,"Unweighted reduced Total chi2 = ", total_chi2/(total_n-DOF) -print,"Unweighted mean reduced chi2 = ", total_rchi2/4*total_n/(total_n-DOF) +print,"Unweighted mean reduced chi2 = ", total_rchi2/4*total_n/(total_n-DOF);total_rchi2/4*total_n/(total_n-DOF) original message,'======================================================================',/continue ;print,"Total reduced chi2 = ", (wrchi2_sed+wrchi2_ext+wrchi2_polext+wrchi2_polsed+wrchi2_polfrac)/(n_sed+n_ext+n_polext+n_polsed+n_polfrac-DOF) diff --git a/src/idl/dustem_mpfit_sed.pro b/src/idl/dustem_mpfit_sed.pro old mode 100644 new mode 100755 index 60386bc..60386bc --- a/src/idl/dustem_mpfit_sed.pro +++ b/src/idl/dustem_mpfit_sed.pro diff --git a/src/idl/dustem_nir_continuum.pro b/src/idl/dustem_nir_continuum.pro old mode 100644 new mode 100755 index 35957de..df94c8f --- a/src/idl/dustem_nir_continuum.pro +++ b/src/idl/dustem_nir_continuum.pro @@ -55,6 +55,7 @@ ENDIF scope=['ADD_SED'] + lambir=((*!dustem_params).lambda.lambda) ;=== normalize spectrum to the requested amplitude. diff --git a/src/idl/dustem_parameter_description2type.pro b/src/idl/dustem_parameter_description2type.pro old mode 100644 new mode 100755 index a18783c..a18783c --- a/src/idl/dustem_parameter_description2type.pro +++ b/src/idl/dustem_parameter_description2type.pro diff --git a/src/idl/dustem_planck_function.pro b/src/idl/dustem_planck_function.pro old mode 100644 new mode 100755 index ea2bbe6..ea2bbe6 --- a/src/idl/dustem_planck_function.pro +++ b/src/idl/dustem_planck_function.pro diff --git a/src/idl/dustem_plot_data_sed.pro b/src/idl/dustem_plot_data_sed.pro old mode 100644 new mode 100755 index 6d79b0d..6d79b0d --- a/src/idl/dustem_plot_data_sed.pro +++ b/src/idl/dustem_plot_data_sed.pro diff --git a/src/idl/dustem_plot_ext.pro b/src/idl/dustem_plot_ext.pro old mode 100644 new mode 100755 index 298c81a..deda9cc --- a/src/idl/dustem_plot_ext.pro +++ b/src/idl/dustem_plot_ext.pro @@ -172,8 +172,19 @@ ENDIF ELSE BEGIN cgoplot,xrange,(st.ext.abs_grain(i)+st.ext.sca_grain(i))/norm,color=colors(i+1),psym=psym,line=ls(i+1) ENDELSE ENDFOR - ;oplot,xrange,(abs_tot+sca_tot)/norm,psym=psym - cgoplot,xrange,(abs_tot+sca_tot)/norm,psym=psym + ;cgoplot,xrange,(abs_tot+sca_tot)/norm,psym=psym + + ;cgoplot,xrange,(abs_tot+sca_tot+powerlaw)/norm,psym=psym + + cgoplot,xrange,(st.ext.ext_tot)/norm,psym=psym + + + ; LINES OF CODE TO PLOT THE NEW ADDED PLUGINS TO THE EXTINCTION WILL HAVE TO BE ADDED HERE + + cgoplot,xrange,(*(*!dustem_plugin).powerlaw)/norm,psym=psym,color='cadetblue' + + + IF !dustem_show_plot EQ 2 or multi EQ 2 THEN BEGIN norm = interpol(st.ext.ext_tot,st.ext.wav,(*!dustem_data.ext).wav) diff --git a/src/idl/dustem_plot_ext_notgood.pro b/src/idl/dustem_plot_ext_notgood.pro old mode 100644 new mode 100755 index 83a365d..83a365d --- a/src/idl/dustem_plot_ext_notgood.pro +++ b/src/idl/dustem_plot_ext_notgood.pro diff --git a/src/idl/dustem_plot_extinction.pro b/src/idl/dustem_plot_extinction.pro old mode 100644 new mode 100755 index 3a47a9c..3a47a9c --- a/src/idl/dustem_plot_extinction.pro +++ b/src/idl/dustem_plot_extinction.pro diff --git a/src/idl/dustem_plot_fit_extsed.pro b/src/idl/dustem_plot_fit_extsed.pro old mode 100644 new mode 100755 index 8621f68..8621f68 --- a/src/idl/dustem_plot_fit_extsed.pro +++ b/src/idl/dustem_plot_fit_extsed.pro diff --git a/src/idl/dustem_plot_fit_sed.pro b/src/idl/dustem_plot_fit_sed.pro old mode 100644 new mode 100755 index d6d6701..9b6b634 --- a/src/idl/dustem_plot_fit_sed.pro +++ b/src/idl/dustem_plot_fit_sed.pro @@ -1,9 +1,9 @@ -PRO dustem_plot_fit_sed,st,sed,cont,freefree,synchrotron, $ - res=res,errors=errors,chi2=chi2,rchi2=rchi2, $ - no_spec_error=no_spec_error, $ - help=help,win=win,ps=ps, $ - legend_xpos=legend_xpos,legend_ypos=legend_ypos,legend_offset=legend_offset, $ - _extra=_extra + PRO dustem_plot_fit_sed,st,sed, $ + res=res,errors=errors,chi2=chi2,rchi2=rchi2, $ + no_spec_error=no_spec_error, $ + help=help,win=win,ps=ps, $ + legend_xpos=legend_xpos,legend_ypos=legend_ypos,legend_offset=legend_offset, $ + _extra=_extra ;+ ; NAME: @@ -55,12 +55,13 @@ IF keyword_set(help) THEN BEGIN ENDIF IF keyword_set(ps) THEN BEGIN - set_plot, 'PS' - device, filename=ps, /color, /encapsulated -ENDIF ;ELSE BEGIN -; set_plot,'X' -; IF keyword_set(win) then window,win -;ENDELSE + set_plot, 'PS' + device, filename=ps, /color, /encapsulated +ENDIF ELSE BEGIN + + set_plot,'X' + IF keyword_set(win) then window,win +ENDELSE fact = 1.e4*1.E20/(4.*!pi)/(3.e8/1.e-6/st.sed.wav)*1.e20/1.e7 @@ -86,47 +87,17 @@ IF not keyword_set(line_tot) THEN BEGIN ENDIF ELSE BEGIN use_line_tot=line_tot ENDELSE -;color and linestyle for continuum -IF not keyword_set(col_cont) THEN BEGIN - ;use_col_cont=30 - use_col_cont='Navy' -ENDIF ELSE BEGIN - use_col_count=col_cont -ENDELSE -IF not keyword_set(line_cont) THEN BEGIN - use_line_cont=0 -ENDIF ELSE BEGIN - use_line_cont=line_cont -ENDELSE -;color and linestyle for freefree -IF not keyword_set(col_freefree) THEN BEGIN - ;use_col_cont=30 - use_col_freefree='Dark Red' -ENDIF ELSE BEGIN - use_col_freefree=col_freefree -ENDELSE -IF not keyword_set(line_freefree) THEN BEGIN - use_line_freefree=0 -ENDIF ELSE BEGIN - use_line_freefree=line_freefree -ENDELSE -IF not keyword_set(col_synchrotron) THEN BEGIN - ;use_col_cont=30 - use_col_synchrotron='Dark Red' -ENDIF ELSE BEGIN - use_col_synchrotron=col_synchrotron -ENDELSE -IF not keyword_set(line_synchrotron) THEN BEGIN - use_line_synchrotron=0 -ENDIF ELSE BEGIN - use_line_synchrotron=line_synchrotron -ENDELSE -;spec = st.sed.em_tot * fact + cont + spec = st.sed.em_tot * fact -IF !dustem_idl_continuum THEN spec=spec+cont -IF !dustem_idl_freefree THEN spec=spec+freefree -IF !dustem_idl_synchrotron THEN spec=spec+synchrotron + +;ADDING PLUGIN(S) TO SPECTRUM---------------- +;if n_tags(!dustem_data.sed) gt 1 then begin +for i=0L,n_tags(*!dustem_scope)-1 do begin +if total(strsplit((*!dustem_scope).(i),'+',/extract) eq 'ADD_SED') then spec+=(*(*!dustem_plugin).(i)) +endfor +;endif +;------------------------------------------ ;stop @@ -141,8 +112,18 @@ use_lines=replicate(0,Ngrains) norm = sed * 0. + 1 +xr=[1,10000] +yr=[1e-5,1e3] + ;====== PLOT THE SED -cgplot,(*!dustem_data.sed).wav,(*!dustem_data.sed).values/norm,/nodata,_extra=_extra +cgplot,(*!dustem_data.sed).wav,(*!dustem_data.sed).values/norm,/nodata,xtit='',ytit=textoidl('Brightness/N_H (MJy/sr/H)'),tit='Spectral Energy Distribution',ylog=1,/xlog,xr=xr,yr=yr,/ys,/xs,position=[0.17,0.35,0.93,0.93],xtickformat='(A1)' + + +;cgplot,st.polsed.wav,Q_sed*fact,xtit='',ytit=ytitstq,tit=titstq,ylog=ylog,/xlog,xr=xr,yr=yr,/ys,/xs,position=[0.17,0.35,0.95,0.95],xtickformat='(A1)' + +;this is where you will add the normalized sed + + ind_filt=where((*!dustem_data.sed).filt_names NE 'SPECTRUM',count_filt) ind_spec=where((*!dustem_data.sed).filt_names EQ 'SPECTRUM',count_spec) ;=== Plot the data @@ -151,7 +132,7 @@ IF count_spec NE 0 THEN BEGIN xx=((*!dustem_data.sed).wav)[ind_spec] yy=((*!dustem_data.sed).values)[ind_spec]/norm[ind_spec] rms=3.*((*!dustem_data.sed).sigma)[ind_spec]/2./norm[ind_spec] - cgoplot,xx,yy,psym=8,_extra=extra,syms=0.5,color=use_col_sed_spec + cgoplot,xx,yy,psym=8,syms=0.5,color=use_col_sed_spec IF not keyword_set(no_spec_error) THEN BEGIN cgerrplot,xx,yy-rms,yy+rms,color=use_col_sed_spec ;err_bar,((*!dustem_data.sed).wav)(ind_spec),((*!dustem_data.sed).values)(ind_spec)/norm(ind_spec),yrms=3.*((*!dustem_data.sed).sigma)(ind_spec)/2./norm(ind_spec) @@ -163,9 +144,9 @@ IF count_filt NE 0 THEN BEGIN yy=((*!dustem_data.sed).values)[ind_filt]/norm[ind_filt] rms=3.*((*!dustem_data.sed).sigma)[ind_filt]/2./norm[ind_filt] plotsym,0,/fill - cgoplot,xx,yy,psym=8,_extra=extra,color=use_col_data_filt + cgoplot,xx,yy,psym=8,color='Dodger Blue';use_col_data_filt ;err_bar,((*!dustem_data.sed).wav)(ind_filt),((*!dustem_data.sed).values)(ind_filt)/norm(ind_filt),yrms=3.*((*!dustem_data.sed).sigma)(ind_filt)/2./norm(ind_filt),color=use_col_data_filt - cgerrplot,xx,yy-rms,yy+rms,color=use_col_data_filt + cgerrplot,xx,yy-rms,yy+rms,color='Dodger Blue';use_col_data_filt ENDIF ;=== Plot the computed SED IF count_filt NE 0 THEN BEGIN @@ -190,26 +171,32 @@ ENDELSE FOR i=0L,Ngrains-1 DO BEGIN cgoplot,st.sed.wav,st.sed.(i+1)*fact/norm,color=use_cols[i],linestyle=use_lines[i] ENDFOR -;NIR continuum -IF !dustem_idl_continuum THEN BEGIN - cgoplot,st.sed.wav,cont,color=use_col_cont,linestyle=use_line_cont + + +;PLOTTING OF THE PLUGIN(S)--------------- +IF tag_exist(*!dustem_scope,'CONTINUUM') THEN BEGIN + cgoplot,st.sed.wav,(*(*!dustem_plugin).continuum),color='Navy',linestyle=3 ENDIF -IF !dustem_idl_freefree THEN BEGIN - cgoplot,st.sed.wav,freefree,color=use_col_freefree,linestyle=use_line_freefree +IF tag_exist(*!dustem_scope,'FREE_FREE') THEN BEGIN + cgoplot,st.sed.wav,(*(*!dustem_plugin).freefree),color='Dark Red',linestyle=3 ENDIF -IF !dustem_idl_synchrotron THEN BEGIN - cgoplot,st.sed.wav,synchrotron,color=use_col_synchrotron,linestyle=use_line_synchrotron +IF tag_exist(*!dustem_scope,'SYNCHROTRON') THEN BEGIN + cgoplot,st.sed.wav,(*(*!dustem_plugin).synchrotron),color='Crimson',linestyle=3 ENDIF + cgoplot,st.sed.wav,spec/norm,color=use_col_tot,linestyle=use_line_tot +;plot the normalized data as well. +;---------------------------------------- ;==== print the legend frmt0='(A26)' frmt1='(1E10.2)' frmt2='(F7.2)' -use_legend_xpos=0.8 -use_legend_ypos=0.8 +use_legend_xpos=0.59 +use_legend_ypos=0.92 use_legend_offset=0.03 ;This is the offset between lines of the legend in normalized units legend_charsize=1.0 +k=0 IF keyword_set(legend_xpos) THEN use_legend_xpos=legend_xpos IF keyword_set(legend_ypos) THEN use_legend_ypos=legend_ypos IF keyword_set(legend_offset) THEN use_legend_offset=legend_offset @@ -226,20 +213,40 @@ IF keyword_set(res) THEN BEGIN IF keyword_set(errors) THEN BEGIN str=str+textoidl('\pm')+string(errors(i),format=frmt1) ENDIF - yypos=use_legend_ypos-(i+1)*use_legend_offset - xyouts,use_legend_xpos,yypos,str,color=0,/normal,charsize=legend_charsize + + if STRUPCASE(strmid(strtrim(parameter_description,2),0,6)) eq 'DUSTEM' then begin + yypos=use_legend_ypos-(i-k)*use_legend_offset + xxpos=use_legend_xpos*0.52 + endif else begin + yypos=use_legend_ypos-(i+1)*use_legend_offset + xxpos=use_legend_xpos + k=i + endelse + ;yypos=use_legend_ypos-(i+1)*use_legend_offset + xyouts,xxpos,yypos,str,color=0,/normal,charsize=legend_charsize ENDFOR ;stop ENDIF IF keyword_set(chi2) THEN BEGIN - yypos=use_legend_ypos-(Npar+1)*use_legend_offset - xyouts,use_legend_xpos,yypos,string('chi2=',format=frmt0)+string(chi2,format=frmt2),color=0,/normal,charsize=legend_charsize + xxpos=use_legend_xpos*0.11 + yypos=use_legend_ypos-(1)*use_legend_offset + xyouts,xxpos,yypos,string('chi2=',format=frmt0)+string(chi2,format=frmt2),color=0,/normal,charsize=legend_charsize ENDIF IF keyword_set(rchi2) THEN BEGIN - yypos=use_legend_ypos-(Npar+2)*use_legend_offset - xyouts,use_legend_xpos,yypos,string('red. chi2=',format=frmt0)+string(rchi2,format=frmt2),color=0,/normal,charsize=legend_charsize + xxpos=use_legend_xpos*0.11 + yypos=use_legend_ypos-(2)*use_legend_offset + xyouts,xxpos,yypos,string('red. chi2=',format=frmt0)+string(rchi2,format=frmt2),color=0,/normal,charsize=legend_charsize ENDIF +xtit=textoidl('\lambda (\mum)') +cgplot,(*!dustem_data.sed).wav,(*!dustem_data.sed).values/sed,/nodata,xtit=xtit,ytit='Normalized',tit='',/xlog,xr=xr,/ys,/xs,yr=[0,2],ylog=0,position=[0.17,0.14,0.93,0.35],/noerase,yticks=2,ymino=5,xticklen=0.1 +;plot the normalized data as well. +cgoplot,(*!dustem_data.sed).wav,(*!dustem_data.sed).values/sed,psym=16,symsize=1,thick=2,color='Dodger Blue' +cgoplot,st.sed.wav,spec/spec,color='black' +cgerrplot,((*!dustem_data.sed).wav),((*!dustem_data.sed).values)/sed-3.*((*!dustem_data.sed).sigma)/2./sed,((*!dustem_data.sed).values)/sed+3.*((*!dustem_data.sed).sigma)/2./sed,color='Dodger Blue' + + + IF keyword_set(ps) THEN BEGIN device,/close set_plot,'X' diff --git a/src/idl/dustem_plot_fpol.pro b/src/idl/dustem_plot_fpol.pro old mode 100644 new mode 100755 index 59b9e7d..0666f51 --- a/src/idl/dustem_plot_fpol.pro +++ b/src/idl/dustem_plot_fpol.pro @@ -6,7 +6,7 @@ if not keyword_set(multi) then multi = 0 nsz_max = 200 ; Read DUSTEM_wrap fit files -if not keyword_set(dir_in) then dir_in = !dustem_dat +if not keyword_set(dir_in) then dir_in = !dustem_soft_dir ;!dustem_dat because it was looking for a file only there. My might need to be revised I'm not sure if multi ne 2 then begin if keyword_set(ps) then begin @@ -18,11 +18,14 @@ endif else begin endelse endif -;st_grains=dustem_read_grain(dir_in+'data/'+(*!dustem_inputs).grain,/silent) -st_grains=dustem_read_grain(dir_in+'data/'+'GRAIN.DAT',/silent) +st_grains=dustem_read_grain(dir_in+'data/'+(*!dustem_inputs).grain,/silent) +;st_grains=dustem_read_grain(dir_in+'data/'+'GRAIN.DAT',/silent) -ngrains = st_grains.ngrains -colors=dustem_grains_colors(Ngrains,ls,ps=ps) +;ngrains = st_grains.ngrains I WILL BE REPLACING THIS LINE +ngrains= ((*!dustem_params).ngrains) + + +colors=dustem_grains_colors(ngrains,ls,ps=ps) ;j=where(polfile ne '', count) ;if count le 1 then begin @@ -41,15 +44,15 @@ amax = 1e8 nrad = 20000 a = amin * exp(alog(amax/amin)/(nrad-1)*indgen(nrad)) -if multi eq 0 then plot,a,a,/nodata,xr=xr,yr=yr,/xs,/ys,xtit=xtit,ytit=ytit,tit='',/xlog -if multi eq 2 then plot,a,a,/nodata,xr=xr,yr=yr,/xs,/ys,xtit=xtit,ytit=ytit,tit='',/xlog,position=[0.17,0.14,0.95,0.45],/noerase,ymino=2,xticklen=0.07 +if multi eq 0 then cgplot,a,a,/nodata,xr=xr,yr=yr,/xs,/ys,xtit=xtit,ytit=ytit,tit=tit,/xlog +if multi eq 2 then cgplot,a,a,/nodata,xr=xr,yr=yr,/xs,/ys,xtit=xtit,ytit=ytit,tit='',/xlog,position=[0.17,0.14,0.95,0.45],/noerase,ymino=2,xticklen=0.07 st_align=dustem_read_align(dir_in+'data/',st_grains,silent=silent) for i=0,ngrains-1 do begin if st_align.grains(i).aligned then begin f_pol = 0.5*st_align.grains(i).plev * (1 + TANH((alog(a*1e-3/(st_align.grains(i).athresh))) / st_align.grains(i).pstiff ) ) - oplot,a,f_pol, line=ls(i+1),col=colors(i+1) + cgoplot,a,f_pol, line=ls(i+1),color='black';,col=colors(i+1) ; this line should be tested with multiple polarizing grain species endif endfor diff --git a/src/idl/dustem_plot_legend.pro b/src/idl/dustem_plot_legend.pro old mode 100644 new mode 100755 index 9715d00..9715d00 --- a/src/idl/dustem_plot_legend.pro +++ b/src/idl/dustem_plot_legend.pro diff --git a/src/idl/dustem_plot_nuinu_em.pro b/src/idl/dustem_plot_nuinu_em.pro old mode 100644 new mode 100755 index e751422..e751422 --- a/src/idl/dustem_plot_nuinu_em.pro +++ b/src/idl/dustem_plot_nuinu_em.pro diff --git a/src/idl/dustem_plot_polar.pro b/src/idl/dustem_plot_polar.pro old mode 100644 new mode 100755 index 0805452..356a7be --- a/src/idl/dustem_plot_polar.pro +++ b/src/idl/dustem_plot_polar.pro @@ -1,4 +1,4 @@ -PRO dustem_plot_polar,st,ps=ps,_Extra=extra,help=help,UV=UV,SED=SED,Pfrac=Pfrac,print_ratio=print_ratio,win=win,cont=cont,xr=xr,yr=yr,donotclose=donotclose,aligned=aligned,noerrbars=noerrbars,multi=multi,almabands=almabands,nsmooth=nsmooth +PRO dustem_plot_polar,st,p_dim,ps=ps,_Extra=extra,help=help,UV=UV,SED=SED,Pfrac=Pfrac,print_ratio=print_ratio,win=win,xr=xr,yr=yr,donotclose=donotclose,aligned=aligned,noerrbars=noerrbars,multi=multi,almabands=almabands,nsmooth=nsmooth ;+ ; NAME: @@ -61,7 +61,9 @@ if multi ne 2 then begin device, filename=ps, /color, /encapsulated endif else begin set_plot,'X' - if keyword_set(win) then window,win + if keyword_set(win) then begin + if ptr_valid(!dustem_data.polsed) then window,win,title='DUSTEM WRAP (POLSED)' else window,win,title='DUSTEM WRAP (POLEXT)' + endif endelse endif @@ -70,12 +72,11 @@ endif use_col_sed_filt = 70 use_col_data_filt = 250 -;Ngrains=n_tags(st.sed)-2 -Ngrains=(*!dustem_params).Ngrains +Ngrains=n_tags(st.sed)-2 colors=dustem_grains_colors(Ngrains,ls,ps=ps) -xtit=textoidl('\lambda (\mum)') +if ptr_valid(!dustem_data.polsed) then xtit=textoidl('\lambda (\mum)') else xtit=textoidl('\lambda^{-1} (\mum^{-1})') ;ext_tot=st.ext.abs_grain(0)*0. ;polext_tot=st.polext.abs_grain(0)*0. @@ -88,6 +89,7 @@ xtit=textoidl('\lambda (\mum)') defsysv,'!dustem_data',exists=data_exists IF ptr_valid(!dustem_data.polext) THEN BEGIN + interpolext = interpol(st.polext.ext_tot,st.polext.wav,(*!dustem_data.polext).wav) IF keyword_set(print_ratio) THEN BEGIN ; Correction de couleur cc = 1.11 @@ -123,12 +125,12 @@ IF ptr_valid(!dustem_data.polext) THEN BEGIN ; 1 W/m2/sr/1d20H = 1e-17 erg/s/sr/H ENDIF IF ptr_valid(!dustem_data.polsed) THEN BEGIN - dustem_polsed = dustem_compute_polsed(p_dim,st.polsed,cont=cont) + dustem_polsed = dustem_compute_polsed(p_dim,st);dustem_compute_polsed(p_dim,st.polsed,cont=cont) x=min(((*!dustem_data.polsed).wav-850)^2,jmin) P353 = dustem_polsed(jmin) P353_data = (*!dustem_data.polsed).values(jmin) - dustem_sed = dustem_compute_sed(p_dim,st,cont=cont) + dustem_sed = dustem_compute_sed(p_dim,st);dustem_compute_sed(p_dim,st,cont=cont) x=min(((*!dustem_data.sed).wav-850)^2,jmin) I353 = dustem_sed(jmin) I353_data = (*!dustem_data.sed).values(jmin) @@ -189,16 +191,15 @@ IF ptr_valid(!dustem_data.polext) THEN BEGIN ;print ENDIF ENDIF -ENDIF ELSE BEGIN + IF keyword_set(UV) THEN BEGIN - if not keyword_set(ps) then tit='Dustem polarization cross-section' + if not keyword_set(ps) then tit='Polarization Cross-section' ytit=textoidl('\sigma_{pol}/N_H (cm^2/H)') if ptr_valid(!dustem_data.polext) then begin - if !dustem_show_plot EQ 2 or multi eq 2 then begin ;normpol = polext_tot normpol = st.polext.ext_tot - dustem_polext = interpol(st.polext.ext_tot,st.polext.wav,(*!dustem_data.polext).wav) + dustem_polext = interpol(st.polext.ext_tot,st.polext.wav,(*!dustem_data.polext).wav) yr=[0.,2.] ylog = 0 endif else begin @@ -207,33 +208,51 @@ ENDIF ELSE BEGIN ylog = 1 endelse - if multi eq 0 then plot_oo,st.polext.wav,st.polext.ext_tot/normpol,/nodata,_Extra=extra,xtit=xtit,ytit=ytit,tit=tit,xr=xr,yr=yr,ylog=ylog - if multi eq 1 then plot_oo,st.polext.wav,st.polext.ext_tot/normpol,/nodata,_Extra=extra,xtit='',ytit=ytit,tit=tit,xr=xr,yr=yr,ylog=ylog,position=[0.17,0.35,0.95,0.95],xtickformat='(A1)' - if multi eq 2 then plot_oo,st.polext.wav,st.polext.ext_tot/normpol,/nodata,_Extra=extra,xtit=xtit,ytit='Normalized',tit='',xr=xr,yr=[-1,2],ylog=ylog,position=[0.17,0.14,0.95,0.35],/noerase,yticks=3,ymino=5,xticklen=0.1 - - + if multi eq 0 then cgplot,st.polext.wav,st.polext.ext_tot/normpol,/nodata,xtit=xtit,ytit=ytit,tit=tit,xr=xr,yr=yr,ylog=ylog,xlog=1 + if multi eq 1 then cgplot,st.polext.wav,st.polext.ext_tot/normpol,/nodata,_Extra=extra,xtit='',ytit=ytit,tit=tit,xr=xr,yr=yr,ylog=ylog,position=[0.17,0.35,0.93,0.93],xtickformat='(A1)' ,xlog=1 + if multi eq 2 then cgplot,st.polext.wav,st.polext.ext_tot/normpol,/nodata,_Extra=extra,xtit=xtit,ytit='Normalized',tit='',xr=xr,yr=[0,2],ylog=ylog,position=[0.17,0.14,0.93,0.35],/noerase,yticks=3,ymino=5,xticklen=0.1,xlog=1 + + FOR i=0L,Ngrains-1 DO BEGIN - if aligned(i) then oplot,st.polext.wav,(st.polext.abs_grain(i)+st.polext.sca_grain(i))/normpol,color=colors(i+1),psym=psym,line=ls(i+1) + if aligned(i) then cgoplot,1/st.polext.wav,(st.polext.abs_grain(i)+st.polext.sca_grain(i))/normpol,color=colors(i+1),psym=psym,line=ls(i+1) ENDFOR - if total(aligned gt 0) then oplot,st.polext.wav,st.polext.ext_tot/normpol,psym=psym - + if total(aligned gt 0) then cgoplot,1/st.polext.wav,st.polext.ext_tot/normpol,psym=psym + if data_exists then BEGIN if ptr_valid(!dustem_data.polext) then begin plotsym,0,/FILL - oplot, (*!dustem_data.polext).wav,(*!dustem_data.polext).values/dustem_polext,ps=4 - if not keyword_set(noerrbars) then err_bar,(*!dustem_data.polext).wav,(*!dustem_data.polext).values/dustem_polext,yrms=(*!dustem_data.polext).sigma/dustem_polext + cgoplot,1/(*!dustem_data.polext).wav,(*!dustem_data.polext).values/dustem_polext,psym=16,color='Olive Drab' + if multi ne 2 then cgoplot,1/(*!dustem_data.polext).wav,interpolext/dustem_polext,psym=6,syms=2,color='red' + if not keyword_set(noerrbars) then err_bar,(*!dustem_data.polext).wav,(*!dustem_data.polext).values/dustem_polext,yrms=(*!dustem_data.polext).sigma/dustem_polext,col=cgColor('Olive Drab') endif ENDIF ENDIF ENDIF -ENDELSE + if multi eq 0 then begin + if not keyword_set(ps) then tit='Polarization fraction in extinction' + ytit='Polarization fraction' + cgplot,st.polext.wav,st.polext.ext_tot/st.ext.ext_tot,/nodata,_Extra=extra,xtit=xtit,ytit=ytit,tit=tit,xr=xr,yr=yr + FOR i=0L,Ngrains-1 DO BEGIN + cgoplot,st.polext.wav,smooth((st.polext.abs_grain(i)+st.polext.sca_grain(i))/(st.ext.abs_grain(i)+st.ext.sca_grain(i)),nsmooth),color=colors(i+1),psym=psym,line=ls(i+1) + ENDFOR + if total(aligned gt 0) then cgoplot,st.polext.wav,st.polext.ext_tot/st.ext.ext_tot,psym=psym + cgoplot,st.polsed.wav,st.polsed.(Ngrains+1)/st.sed.(Ngrains+1),psym=psym,linestyle=2 + + if data_exists and ptr_valid(!dustem_data.polext) and ptr_valid(!dustem_data.ext) then begin + values_ext_for_polext = interpol((*!dustem_data.ext).values,(*!dustem_data.ext).wav,(*!dustem_data.polext).wav) + sigma_ext_for_polext = interpol((*!dustem_data.ext).sigma ,(*!dustem_data.ext).wav,(*!dustem_data.polext).wav) + if not keyword_set(noerrbars) then err_bar,(*!dustem_data.polext).wav,(*!dustem_data.polext).values/values_ext_for_polext, $ + yrms=1./values_ext_for_polext * (*!dustem_data.polext).sigma + (*!dustem_data.polext).values/values_ext_for_polext^2 * sigma_ext_for_polext + endif + endif +ENDIF IF ptr_valid(!dustem_data.polsed) THEN BEGIN - if not keyword_set(ps) then tit='Polarization intensity in emission' - ytit='Polarization intensity' + if not keyword_set(ps) then tit='Polarization Intensity';' in emission' + ytit='Polarization Intensity' ;is this line used? ytit=textoidl('\nuP_\nu/N_H (W/m^2/sr/H)') - + ; Convert from erg/s/H into W/m2/sr/H fact=1./(4.*!pi)*1.e17/1d20 @@ -250,18 +269,22 @@ IF ptr_valid(!dustem_data.polsed) THEN BEGIN if not keyword_set(yr) then yr=[1e-34,1e-30] endelse - if multi eq 0 then cgplot,st.polsed.wav,/nodata,st.polsed.(Ngrains+1)*fact/normpol,xtit=xtit,ytit=ytit,tit=tit,ylog=ylog,/xlog,xr=xr,yr=yr,/ys,/xs - if multi eq 1 then cgplot,st.polsed.wav,/nodata,st.polsed.(Ngrains+1)*fact/normpol,xtit='',ytit=ytit,tit=tit,ylog=ylog,/xlog,xr=xr,yr=yr,/ys,/xs,position=[0.17,0.35,0.95,0.95],xtickformat='(A1)' - if multi eq 2 then cgplot,st.polsed.wav,/nodata,st.polsed.(Ngrains+1)*fact/normpol,xtit=xtit,ytit='Normalized',tit='',/xlog,xr=xr,/ys,/xs,yr=[0,2],ylog=0,position=[0.17,0.14,0.95,0.35],/noerase,yticks=2,ymino=5,xticklen=0.1 + if multi eq 0 then cgplot,st.polsed.wav,/nodata,st.polsed.(Ngrains+1)*fact/normpol,xtit=xtit,ytit=ytit,tit=tit,ylog=ylog,/xlog,xr=xr,yr=yr,/ys,/xs + if multi eq 1 then cgplot,st.polsed.wav,/nodata,st.polsed.(Ngrains+1)*fact/normpol,xtit='',ytit=ytit,tit=tit,ylog=ylog,/xlog,xr=xr,yr=yr,/ys,/xs,position=[0.17,0.35,0.93,0.93],xtickformat='(A1)' + if multi eq 2 then cgplot,st.polsed.wav,/nodata,st.polsed.(Ngrains+1)*fact/normpol,xtit=xtit,ytit='Normalized',tit='',/xlog,xr=xr,/ys,/xs,yr=[0,2],ylog=0,position=[0.17,0.14,0.93,0.35],/noerase,yticks=2,ymino=5,xticklen=0.1 + + for i = 0, Ngrains-1 do begin - if aligned(i) then cgoplot,st.polsed.wav,st.polsed.(i+1)*fact/normpol,color=colors(i+1),psym=psym,line=ls(i+1) + if aligned(i) then cgoplot,st.polsed.wav,st.polsed.(i+1)*fact/normpol,color=colors(i+1),psym=psym,line=ls(i+1) ;investigate this line of the plotting of the different components in polarization endfor - if (total(aligned) gt 0) then cgoplot,st.polsed.wav,st.polsed.(Ngrains+1)*fact/normpol - + + if total(aligned gt 0) && multi ne 2 then cgoplot,st.polsed.wav,st.polsed.(Ngrains+1)*fact/normpol,color='Teal' + if total(aligned gt 0) && multi eq 2 then cgoplot,st.polsed.wav,st.polsed.(Ngrains+1)*fact/normpol,color='black' + if data_exists then BEGIN if ptr_valid(!dustem_data.polsed) then begin - + ind_filt=where((*!dustem_data.polsed).filt_names NE 'SPECTRUM',count_filt) ;=== Plot the data IF count_filt NE 0 THEN BEGIN @@ -272,24 +295,42 @@ IF ptr_valid(!dustem_data.polsed) THEN BEGIN ; Convert data which Pnu in MJy/sr/1d20 into nu*Pnu in W/m2/sr/1d20 fact = (3.e10/(1.e-4*(*!dustem_data.polsed).wav(ind_filt)))/1.d40 endelse - dustem_polsed = dustem_compute_polsed(p_dim,st,cont=cont)*fact + dustem_polsed = dustem_compute_polsed(p_dim,st)*fact;dustem_compute_polsed(p_dim,st,cont=cont)*fact + if !dustem_show_plot EQ 2 or multi eq 2 then begin normpol = dustem_polsed endif else begin normpol = dustem_polsed * 0. + 1 endelse plotsym,0,/FILL - cgoplot,((*!dustem_data.polsed).wav)(ind_filt),((*!dustem_data.polsed).values)(ind_filt)*fact/normpol(ind_filt),psym=8,_extra=extra,color=use_col_sed_filt,symsize=0.7 - if not keyword_set(noerrbars) then err_bar,((*!dustem_data.polsed).wav)(ind_filt),((*!dustem_data.polsed).values)(ind_filt)*fact/normpol(ind_filt),yrms=3.*((*!dustem_data.polsed).sigma)(ind_filt)/2.*fact/normpol(ind_filt),color=use_col_sed_filt + + cgoplot,((*!dustem_data.polsed).wav)(ind_filt),((*!dustem_data.polsed).values)(ind_filt)*fact/normpol(ind_filt),psym=8,_extra=extra,color='Orchid',thick=2;use_col_sed_filt + if multi ne 2 then cgoplot,((*!dustem_data.polsed).wav),dustem_polsed/normpol,psym=6,color='red',symsize=2 + + + if not keyword_set(noerrbars) then err_bar,((*!dustem_data.polsed).wav)(ind_filt),((*!dustem_data.polsed).values)(ind_filt)*fact/normpol(ind_filt),yrms=3.*((*!dustem_data.polsed).sigma)(ind_filt)/2.*fact/normpol(ind_filt),color=cgColor('Orchid');use_col_sed_filt ; PLot color corrected POLSED if keyword_set(ps) then plotsym,8,thick=8 else plotsym,8 if multi eq 0 then cgoplot,((*!dustem_data.polsed).wav)(ind_filt),dustem_polsed(ind_filt)/normpol(ind_filt),psym=8,syms=2,_extra=extra,col='red' ENDIF + + IF tag_exist(*!dustem_scope,'SYNCHROTRON') THEN BEGIN + indx=where((*(*!dustem_fit).param_descs) EQ 'dustem_create_stokes_3',counttx) + + if total(counttx) then frac_synch=p_dim(indx) else frac_synch=0.7 ;THIS LINE IS TO TAKE INTO ACCOUNT WHEN THE AMPLITUDE OF THE SYNCHROTRON IS FROZEN + + cgoplot,st.polsed.wav,(*(*!dustem_plugin).synchrotron)*frac_synch(0)*(3.e10/(1.e-4*(st.polsed.wav)))/1.d40,color='Crimson',linestyle=3 + cgoplot,st.polsed.wav,st.polsed.em_tot*1./(4.*!pi)*1.e17/1d20+((*(*!dustem_plugin).synchrotron))*frac_synch(0)*(3.e10/(1.e-4*(st.polsed.wav)))/1.d40,color='black' + + ENDIF + endif - endif - -endif else BEGIN + + + + endif +endif ;else BEGIN if keyword_set(Pfrac) then begin ; Also show prediction for polarized SED @@ -324,7 +365,7 @@ endif else BEGIN if keyword_set(ps) then plotsym,8,thick=8 else plotsym,8 dustem_polsed = dustem_compute_polsed(p_dim,st.polsed) - dustem_sed_tmp = dustem_compute_sed(p_dim,st,cont=cont) + dustem_sed_tmp = dustem_compute_sed(p_dim,st);dustem_compute_sed(p_dim,st,cont=cont) dustem_sed = dustem_polsed for i = 0, count_filt-1 do begin j=where((*!dustem_data.polsed).filt_names(ind_filt(i)) eq (*!dustem_data.sed).filt_names,count) @@ -335,32 +376,18 @@ endif else BEGIN endif - endif else begin - - if not keyword_set(ps) then tit='Polarization fraction in extinction' - ytit='Polarization fraction' - plot_oi,st.polext.wav,st.polext.ext_tot/st.ext.ext_tot,/nodata,_Extra=extra,xtit=xtit,ytit=ytit,tit=tit,xr=xr,yr=yr - FOR i=0L,Ngrains-1 DO BEGIN - oplot,st.polext.wav,smooth((st.polext.abs_grain(i)+st.polext.sca_grain(i))/(st.ext.abs_grain(i)+st.ext.sca_grain(i)),nsmooth),color=colors(i+1),psym=psym,line=ls(i+1) - ENDFOR - if (total(aligned) gt 0) then oplot,st.polext.wav,st.polext.ext_tot/st.ext.ext_tot,psym=psym - oplot,st.polsed.wav,st.polsed.(Ngrains+1)/st.sed.(Ngrains+1),psym=psym,linestyle=2 + endif ;else begin - if data_exists and ptr_valid(!dustem_data.polext) and ptr_valid(!dustem_data.ext) then begin - values_ext_for_polext = interpol((*!dustem_data.ext).values,(*!dustem_data.ext).wav,(*!dustem_data.polext).wav) - sigma_ext_for_polext = interpol((*!dustem_data.ext).sigma ,(*!dustem_data.ext).wav,(*!dustem_data.polext).wav) - if not keyword_set(noerrbars) then err_bar,(*!dustem_data.polext).wav,(*!dustem_data.polext).values/values_ext_for_polext, $ - yrms=1./values_ext_for_polext * (*!dustem_data.polext).sigma + (*!dustem_data.polext).values/values_ext_for_polext^2 * sigma_ext_for_polext - endif - endelse -endelse +; endelse +; endelse -if keyword_set(ps) and not keyword_set(donotclose) then begin +if keyword_set(ps) && not keyword_set(donotclose) then begin device,/close set_plot,'X' endif + the_end: END diff --git a/src/idl/dustem_plot_sdist.pro b/src/idl/dustem_plot_sdist.pro old mode 100644 new mode 100755 index 293eb5b..293eb5b --- a/src/idl/dustem_plot_sdist.pro +++ b/src/idl/dustem_plot_sdist.pro diff --git a/src/idl/dustem_radiance.pro b/src/idl/dustem_radiance.pro old mode 100644 new mode 100755 index 3fd4807..3fd4807 --- a/src/idl/dustem_radiance.pro +++ b/src/idl/dustem_radiance.pro diff --git a/src/idl/dustem_rap_xisrf.pro b/src/idl/dustem_rap_xisrf.pro old mode 100644 new mode 100755 index b3f06e7..b3f06e7 --- a/src/idl/dustem_rap_xisrf.pro +++ b/src/idl/dustem_rap_xisrf.pro diff --git a/src/idl/dustem_read_align.pro b/src/idl/dustem_read_align.pro old mode 100644 new mode 100755 index 2fa9cd2..2fa9cd2 --- a/src/idl/dustem_read_align.pro +++ b/src/idl/dustem_read_align.pro diff --git a/src/idl/dustem_read_all.pro b/src/idl/dustem_read_all.pro old mode 100644 new mode 100755 index 3634c30..cd9108e --- a/src/idl/dustem_read_all.pro +++ b/src/idl/dustem_read_all.pro @@ -14,7 +14,7 @@ FUNCTION dustem_read_all,dir_in,silent=silent,help=help ; OPTIONAL INPUT PARAMETERS: ; None ; OUTPUTS: -; st: input structure +; st: input structures ; OPTIONAL OUTPUT PARAMETERS: ; None ; ACCEPTED KEY-WORDS: @@ -45,7 +45,7 @@ IF keyword_set(help) THEN BEGIN ENDIF ;IF getenv('DUSTEM_WHICH') EQ 'WEB3p8' THEN BEGIN -IF !dustem_which EQ 'WEB3p8' THEN BEGIN +IF !dustem_which EQ 'WEB3p8' THEN BEGIN ; I CHANGED THIS AS WELL st=dustem_read_all_web3p8(dir_in,silent=silent) goto,ionfrac ENDIF @@ -62,7 +62,7 @@ st_grains=dustem_read_grain(file,silent=silent) ;stop -file=dir_in+'TAILLE.DAT' +file=dir_in+'TAILLE.DAT' ;I put this back to its original form st_taille=dustem_read_taille(file,silent=silent) file=dir_in+'PROPMASS.DAT' diff --git a/src/idl/dustem_read_all_lv.pro b/src/idl/dustem_read_all_lv.pro old mode 100644 new mode 100755 index 4b52f16..4b52f16 --- a/src/idl/dustem_read_all_lv.pro +++ b/src/idl/dustem_read_all_lv.pro diff --git a/src/idl/dustem_read_all_res.pro b/src/idl/dustem_read_all_res.pro old mode 100644 new mode 100755 index 6f85fc0..6f85fc0 --- a/src/idl/dustem_read_all_res.pro +++ b/src/idl/dustem_read_all_res.pro diff --git a/src/idl/dustem_read_all_web3p8.pro b/src/idl/dustem_read_all_web3p8.pro old mode 100644 new mode 100755 index 1cf8739..1cf8739 --- a/src/idl/dustem_read_all_web3p8.pro +++ b/src/idl/dustem_read_all_web3p8.pro diff --git a/src/idl/dustem_read_calor.pro b/src/idl/dustem_read_calor.pro old mode 100644 new mode 100755 index ae8df29..ae8df29 --- a/src/idl/dustem_read_calor.pro +++ b/src/idl/dustem_read_calor.pro diff --git a/src/idl/dustem_read_calor_lv.pro b/src/idl/dustem_read_calor_lv.pro old mode 100644 new mode 100755 index 4f65d9a..4f65d9a --- a/src/idl/dustem_read_calor_lv.pro +++ b/src/idl/dustem_read_calor_lv.pro diff --git a/src/idl/dustem_read_chrg.pro b/src/idl/dustem_read_chrg.pro old mode 100644 new mode 100755 index 8bb386e..8bb386e --- a/src/idl/dustem_read_chrg.pro +++ b/src/idl/dustem_read_chrg.pro diff --git a/src/idl/dustem_read_circ_vg.pro b/src/idl/dustem_read_circ_vg.pro old mode 100644 new mode 100755 index afa6acb..afa6acb --- a/src/idl/dustem_read_circ_vg.pro +++ b/src/idl/dustem_read_circ_vg.pro diff --git a/src/idl/dustem_read_dustem.pro b/src/idl/dustem_read_dustem.pro old mode 100644 new mode 100755 index f9aa64f..f9aa64f --- a/src/idl/dustem_read_dustem.pro +++ b/src/idl/dustem_read_dustem.pro diff --git a/src/idl/dustem_read_dustem_lv.pro b/src/idl/dustem_read_dustem_lv.pro old mode 100644 new mode 100755 index 1774e21..1774e21 --- a/src/idl/dustem_read_dustem_lv.pro +++ b/src/idl/dustem_read_dustem_lv.pro diff --git a/src/idl/dustem_read_dustem_lv.pro.~1.1.~ b/src/idl/dustem_read_dustem_lv.pro.~1.1.~ old mode 100644 new mode 100755 index 5f8fafe..5f8fafe --- a/src/idl/dustem_read_dustem_lv.pro.~1.1.~ +++ b/src/idl/dustem_read_dustem_lv.pro.~1.1.~ diff --git a/src/idl/dustem_read_ext_lv.pro b/src/idl/dustem_read_ext_lv.pro old mode 100644 new mode 100755 index 7a5e252..7a5e252 --- a/src/idl/dustem_read_ext_lv.pro +++ b/src/idl/dustem_read_ext_lv.pro diff --git a/src/idl/dustem_read_filters.pro b/src/idl/dustem_read_filters.pro old mode 100644 new mode 100755 index 5809e35..5809e35 --- a/src/idl/dustem_read_filters.pro +++ b/src/idl/dustem_read_filters.pro diff --git a/src/idl/dustem_read_gas.pro b/src/idl/dustem_read_gas.pro old mode 100644 new mode 100755 index dcf00c9..dcf00c9 --- a/src/idl/dustem_read_gas.pro +++ b/src/idl/dustem_read_gas.pro diff --git a/src/idl/dustem_read_gemissiv.pro b/src/idl/dustem_read_gemissiv.pro old mode 100644 new mode 100755 index 33547cf..33547cf --- a/src/idl/dustem_read_gemissiv.pro +++ b/src/idl/dustem_read_gemissiv.pro diff --git a/src/idl/dustem_read_grain.pro b/src/idl/dustem_read_grain.pro old mode 100644 new mode 100755 index 8e3ab58..76cee01 --- a/src/idl/dustem_read_grain.pro +++ b/src/idl/dustem_read_grain.pro @@ -1,5 +1,7 @@ FUNCTION dustem_read_grain,file,silent=silent,key_str=key_str,G0=G0,help=help + + ;+ ; NAME: ; dustem_read_grain @@ -86,7 +88,7 @@ ENDIF defsysv,'!run_tls',0. ; Global flag to know if TLS is being run CASE !dustem_which OF - 'WEB3p8': BEGIN + 'WEB3p8': BEGIN frmt='(A,D,D,D,D,D,I,A)' ;count # of lines openr,unit,file,/get_lun diff --git a/src/idl/dustem_read_ionfrac.pro b/src/idl/dustem_read_ionfrac.pro old mode 100644 new mode 100755 index 7ec2fae..7ec2fae --- a/src/idl/dustem_read_ionfrac.pro +++ b/src/idl/dustem_read_ionfrac.pro diff --git a/src/idl/dustem_read_isrf.pro b/src/idl/dustem_read_isrf.pro old mode 100644 new mode 100755 index 7842887..7842887 --- a/src/idl/dustem_read_isrf.pro +++ b/src/idl/dustem_read_isrf.pro diff --git a/src/idl/dustem_read_lambda.pro b/src/idl/dustem_read_lambda.pro old mode 100644 new mode 100755 index c5bed69..c5bed69 --- a/src/idl/dustem_read_lambda.pro +++ b/src/idl/dustem_read_lambda.pro diff --git a/src/idl/dustem_read_mix.pro b/src/idl/dustem_read_mix.pro old mode 100644 new mode 100755 index 33f60e5..33f60e5 --- a/src/idl/dustem_read_mix.pro +++ b/src/idl/dustem_read_mix.pro diff --git a/src/idl/dustem_read_pol.pro b/src/idl/dustem_read_pol.pro old mode 100644 new mode 100755 index 54508f1..54508f1 --- a/src/idl/dustem_read_pol.pro +++ b/src/idl/dustem_read_pol.pro diff --git a/src/idl/dustem_read_propmass.pro b/src/idl/dustem_read_propmass.pro old mode 100644 new mode 100755 index 49be39d..49be39d --- a/src/idl/dustem_read_propmass.pro +++ b/src/idl/dustem_read_propmass.pro diff --git a/src/idl/dustem_read_qabs.pro b/src/idl/dustem_read_qabs.pro old mode 100644 new mode 100755 index 9e05ea5..9e05ea5 --- a/src/idl/dustem_read_qabs.pro +++ b/src/idl/dustem_read_qabs.pro diff --git a/src/idl/dustem_read_qabs_desert.pro b/src/idl/dustem_read_qabs_desert.pro old mode 100644 new mode 100755 index dbf4ae3..dbf4ae3 --- a/src/idl/dustem_read_qabs_desert.pro +++ b/src/idl/dustem_read_qabs_desert.pro diff --git a/src/idl/dustem_read_qabs_lv.pro b/src/idl/dustem_read_qabs_lv.pro old mode 100644 new mode 100755 index 4957bf8..4957bf8 --- a/src/idl/dustem_read_qabs_lv.pro +++ b/src/idl/dustem_read_qabs_lv.pro diff --git a/src/idl/dustem_read_secteffir.pro b/src/idl/dustem_read_secteffir.pro old mode 100644 new mode 100755 index b12bdb7..b12bdb7 --- a/src/idl/dustem_read_secteffir.pro +++ b/src/idl/dustem_read_secteffir.pro diff --git a/src/idl/dustem_read_secteffuv.pro b/src/idl/dustem_read_secteffuv.pro old mode 100644 new mode 100755 index e8c3ab3..e8c3ab3 --- a/src/idl/dustem_read_secteffuv.pro +++ b/src/idl/dustem_read_secteffuv.pro diff --git a/src/idl/dustem_read_size.pro b/src/idl/dustem_read_size.pro old mode 100644 new mode 100755 index 8cc1bc6..8cc1bc6 --- a/src/idl/dustem_read_size.pro +++ b/src/idl/dustem_read_size.pro diff --git a/src/idl/dustem_read_specem.pro b/src/idl/dustem_read_specem.pro old mode 100644 new mode 100755 index 816a34d..816a34d --- a/src/idl/dustem_read_specem.pro +++ b/src/idl/dustem_read_specem.pro diff --git a/src/idl/dustem_read_spin.pro b/src/idl/dustem_read_spin.pro old mode 100644 new mode 100755 index 7fc52f6..7fc52f6 --- a/src/idl/dustem_read_spin.pro +++ b/src/idl/dustem_read_spin.pro diff --git a/src/idl/dustem_read_taille.pro b/src/idl/dustem_read_taille.pro old mode 100644 new mode 100755 index d94d96c..d94d96c --- a/src/idl/dustem_read_taille.pro +++ b/src/idl/dustem_read_taille.pro diff --git a/src/idl/dustem_read_tls.pro b/src/idl/dustem_read_tls.pro old mode 100644 new mode 100755 index 9373550..9373550 --- a/src/idl/dustem_read_tls.pro +++ b/src/idl/dustem_read_tls.pro diff --git a/src/idl/dustem_restore_sed_fit.pro b/src/idl/dustem_restore_sed_fit.pro old mode 100644 new mode 100755 index 07ff5e5..07ff5e5 --- a/src/idl/dustem_restore_sed_fit.pro +++ b/src/idl/dustem_restore_sed_fit.pro diff --git a/src/idl/dustem_restore_system_variables.pro b/src/idl/dustem_restore_system_variables.pro old mode 100644 new mode 100755 index 638c72e..638c72e --- a/src/idl/dustem_restore_system_variables.pro +++ b/src/idl/dustem_restore_system_variables.pro diff --git a/src/idl/dustem_run.pro b/src/idl/dustem_run.pro old mode 100644 new mode 100755 index 66d5b88..66d5b88 --- a/src/idl/dustem_run.pro +++ b/src/idl/dustem_run.pro diff --git a/src/idl/dustem_run.pro.~1.8.~ b/src/idl/dustem_run.pro.~1.8.~ old mode 100644 new mode 100755 index fa67677..fa67677 --- a/src/idl/dustem_run.pro.~1.8.~ +++ b/src/idl/dustem_run.pro.~1.8.~ diff --git a/src/idl/dustem_run_readme.pro b/src/idl/dustem_run_readme.pro old mode 100644 new mode 100755 index 094661a..e6f371e --- a/src/idl/dustem_run_readme.pro +++ b/src/idl/dustem_run_readme.pro @@ -79,9 +79,9 @@ IF not keyword_set(dir) THEN BEGIN 'DESERT':dir='DESERT_POST_ISO_MORE/' 'COMPIEGNE': dir='MC_DAT/' 'VERSTRAETE': dir='d_3.5/' - 'VERSTRAETE': dir='LV_DAT/' -; 'WEB3p8': dir_in='dustem3.8_web/' - 'WEB3p8': dir_in=!dustem_soft_dir + 'VERSTRAETE': dir='LV_DAT/' ;why two of them? + ;'WEB3p8': dir_in='dustem3.8_web/' + 'WEB3p8': dir_in=!dustem_soft_dir ; I changed this ELSE: dir='les_DAT/' ENDCASE ENDIF diff --git a/src/idl/dustem_save_sed_fit.pro b/src/idl/dustem_save_sed_fit.pro old mode 100644 new mode 100755 index f5dd26b..f5dd26b --- a/src/idl/dustem_save_sed_fit.pro +++ b/src/idl/dustem_save_sed_fit.pro diff --git a/src/idl/dustem_save_system_variables.pro b/src/idl/dustem_save_system_variables.pro old mode 100644 new mode 100755 index d724ec0..d724ec0 --- a/src/idl/dustem_save_system_variables.pro +++ b/src/idl/dustem_save_system_variables.pro diff --git a/src/idl/dustem_sed_plot.pro b/src/idl/dustem_sed_plot.pro old mode 100644 new mode 100755 index 4d8811c..2c8d21b --- a/src/idl/dustem_sed_plot.pro +++ b/src/idl/dustem_sed_plot.pro @@ -5,9 +5,13 @@ IF not keyword_set(function_name) THEN BEGIN ;stop ;== JPB: st used to come out from here ;even when not set. Had to replavce by out_st ... - dustem_sed=dustem_compute_sed(p_min,st=st,cont=cont,freefree=freefree,synchrotron=synchrotron,out_st=out_st) + + ;dustem_sed=dustem_compute_sed(p_min,st=st,cont=cont,freefree=freefree,synchrotron=synchrotron,out_st=out_st) + dustem_sed=dustem_compute_sed(p_min,st=st,out_st=out_st) + st=out_st - dustem_plot_fit_sed,st,dustem_sed,cont,freefree,synchrotron,_extra=_extra,legend_xpos=legend_xpos,legend_ypos=legend_ypos + ;dustem_plot_fit_sed,st,dustem_sed,cont,freefree,synchrotron,_extra=_extra,legend_xpos=legend_xpos,legend_ypos=legend_ypos + dustem_plot_fit_sed,st,dustem_sed,_extra=_extra,legend_xpos=legend_xpos,legend_ypos=legend_ypos IF keyword_set(pol) THEN BEGIN stop ;dustem_polsed=dustem_compute_polsed(p_min,st=pst,cont=cont,freefree=freefree,synchrotron=synchrotron,out_st=out_st) diff --git a/src/idl/dustem_set_data.pro b/src/idl/dustem_set_data.pro old mode 100644 new mode 100755 index 0e41b5f..74ed9a7 --- a/src/idl/dustem_set_data.pro +++ b/src/idl/dustem_set_data.pro @@ -1,4 +1,4 @@ -FUNCTION dustem_set_data,help=help,ext=ext,polsed=polsed,polext=polext,sed=sed,polfrac=polfrac,rchi2_weight=rchi2_weight,f_HI=f_HI +FUNCTION dustem_set_data,help=help,ext=ext,polsed=polsed,polext=polext,sed=sed,polfrac=polfrac,rchi2_weight=rchi2_weight,f_HI=f_HI,qsed=qsed,used=used,qext=qext, uext=uext ;+ ; NAME: @@ -56,6 +56,12 @@ ENDIF if keyword_set(polext) then !dustem_data.polext = ptr_new() if keyword_set(polsed) then !dustem_data.polsed = ptr_new() if keyword_set(polfrac) then !dustem_data.polfrac = ptr_new() +if keyword_set(qsed) then !dustem_data.qsed = ptr_new() +if keyword_set(used) then !dustem_data.used = ptr_new() +if keyword_set(qext) then !dustem_data.qext = ptr_new() +if keyword_set(uext) then !dustem_data.uext = ptr_new() + + IF keyword_set(sed) THEN BEGIN wavs=sed.wave @@ -95,6 +101,84 @@ IF keyword_set(polsed) THEN BEGIN ;VGe ENDIF + +IF keyword_set(qsed) THEN BEGIN + wavs=qsed.wave + ;=== Impose central wavelengths for photometric channels + ind=where(qsed.filter NE 'SPECTRUM',count) + IF count NE 0 THEN BEGIN + wavs(ind)=dustem_filter2wav(qsed(ind).filter) + ENDIF + ;=== define observations structure + obs_st={instru_names:qsed.instru,filt_names:qsed.filter,wav:wavs, values:qsed.spec,sigma:qsed.error} + ;=== fill !dustem_data + !dustem_data.qsed = ptr_new(obs_st) + ;VGe + ; If f_HI is specified, multiply the data by f_HI + if keyword_set(f_HI) then if f_HI gt 0 then $ + (*!dustem_data.qsed).values *= f_HI + ;VGe +ENDIF + +IF keyword_set(used) THEN BEGIN + wavs=used.wave + ;=== Impose central wavelengths for photometric channels + ind=where(used.filter NE 'SPECTRUM',count) + IF count NE 0 THEN BEGIN + wavs(ind)=dustem_filter2wav(used(ind).filter) + ENDIF + ;=== define observations structure + obs_st={instru_names:used.instru,filt_names:used.filter,wav:wavs, values:used.spec,sigma:used.error} + ;=== fill !dustem_data + !dustem_data.used = ptr_new(obs_st) + ;VGe + ; If f_HI is specified, multiply the data by f_HI + if keyword_set(f_HI) then if f_HI gt 0 then $ + (*!dustem_data.used).values *= f_HI + ;VGe +ENDIF + + + +IF keyword_set(qext) THEN BEGIN + wavs=qext.wave + ;=== Impose central wavelengths for photometric channels + ind=where(qext.filter NE 'SPECTRUM',count) + IF count NE 0 THEN BEGIN + wavs(ind)=dustem_filter2wav(qext(ind).filter) + ENDIF + ;=== define observations structure + obs_st={instru_names:qext.instru,filt_names:qext.filter,wav:wavs, values:qext.spec,sigma:qext.error} + ;=== fill !dustem_data + !dustem_data.qext = ptr_new(obs_st) + ;VGe + ; If f_HI is specified, multiply the data by f_HI + if keyword_set(f_HI) then if f_HI gt 0 then $ + (*!dustem_data.qext).values *= f_HI + ;VGe +ENDIF + +IF keyword_set(uext) THEN BEGIN + wavs=uext.wave + ;=== Impose central wavelengths for photometric channels + ind=where(uext.filter NE 'SPECTRUM',count) + IF count NE 0 THEN BEGIN + wavs(ind)=dustem_filter2wav(uext(ind).filter) + ENDIF + ;=== define observations structure + obs_st={instru_names:uext.instru,filt_names:uext.filter,wav:wavs, values:uext.spec,sigma:uext.error} + ;=== fill !dustem_data + !dustem_data.uext = ptr_new(obs_st) + ;VGe + ; If f_HI is specified, multiply the data by f_HI + if keyword_set(f_HI) then if f_HI gt 0 then $ + (*!dustem_data.uext).values *= f_HI + ;VGe +ENDIF + + + + IF keyword_set(polfrac) THEN BEGIN wavs=polfrac.wave ;=== Impose central wavelengths for photometric channels @@ -135,11 +219,19 @@ IF keyword_set(ext) THEN BEGIN !dustem_data.ext = ptr_new(obs_st) ENDIF + + + + !fit_rchi2_weight.sed=1. !fit_rchi2_weight.ext=1. if keyword_set(polext) then !fit_rchi2_weight.polext=1. if keyword_set(polsed) then !fit_rchi2_weight.polsed=1. if keyword_set(polfrac) then !fit_rchi2_weight.polfrac=1. +if keyword_set(qsed) then !fit_rchi2_weight.qsed=1. +if keyword_set(used) then !fit_rchi2_weight.used=1. +if keyword_set(qext) then !fit_rchi2_weight.qext=1. +if keyword_set(uext) then !fit_rchi2_weight.uext=1. IF keyword_set(rchi2_weight) THEN begin !fit_rchi2_weight.sed = rchi2_weight.sed @@ -147,6 +239,10 @@ IF keyword_set(rchi2_weight) THEN begin if keyword_set(polext) then !fit_rchi2_weight.polext = rchi2_weight.polext if keyword_set(polsed) then !fit_rchi2_weight.polsed = rchi2_weight.polsed if keyword_set(polfrac) then !fit_rchi2_weight.polfrac = rchi2_weight.polfrac + if keyword_set(qsed) then !fit_rchi2_weight.qsed = rchi2_weight.qsed + if keyword_set(used) then !fit_rchi2_weight.used = rchi2_weight.used + if keyword_set(qext) then !fit_rchi2_weight.qext = rchi2_weight.qext + if keyword_set(uext) then !fit_rchi2_weight.uext = rchi2_weight.uext endif return,ptr_new(obs_st) diff --git a/src/idl/dustem_set_func_ind.pro b/src/idl/dustem_set_func_ind.pro old mode 100644 new mode 100755 index 5b4eadc..bf71ab4 --- a/src/idl/dustem_set_func_ind.pro +++ b/src/idl/dustem_set_func_ind.pro @@ -33,6 +33,9 @@ PRO dustem_set_func_ind,pd,iv ;- nparam = n_elements(*(*!dustem_fit).param_descs) + + + ;!func_ind=ptr_new(fltarr(nparam)) ;SORT THE PARAMETERS @@ -45,11 +48,17 @@ nparam = n_elements(*(*!dustem_fit).param_descs) PDO = ptr_new(pd) ;param_desc ordered (PDO) IDO = ptr_new(iv) ;init_desc ordered (IDO) + + ;==== DEAL WITH THE ISRF<->IONFRAC DEPENDENCY fct = strarr(nparam) + + FOR i=0L,nparam-1 DO BEGIN fct[i] = strmid((*PDO)(i),0,strlen((*PDO)(i))-2.) ENDFOR + + wisrf = where(fct eq 'dustem_create_isrf' or fct eq 'dustem_create_isrf2',cisrf) ;DUSTEM_CREATE_ISRF is being called as a param ? IF cisrf NE 0 THEN BEGIN wionf = where(fct EQ 'dustem_create_ionfrac',cionf) ; DUSTEM_CREATE_IONFRAC is being called as a param ? @@ -66,20 +75,42 @@ IF cisrf NE 0 THEN BEGIN ENDIF ENDIF + + +;REPLACE THIS BLOCK + ;=== added by JPB on June 1st 2021 to set !dustem_idl_continuum when needed -ind=where(fct EQ 'dustem_create_continuum',count) -IF count NE 0 THEN !dustem_idl_continuum=1 -ind=where(fct EQ 'dustem_create_freefree',count) -IF count NE 0 THEN !dustem_idl_freefree=1 -ind=where(fct EQ 'dustem_create_synchrotron',count) -IF count NE 0 THEN !dustem_idl_synchrotron=1 +; ind=where(fct EQ 'dustem_create_continuum',count) +; IF count NE 0 THEN !dustem_idl_continuum=1 +; ind=where(fct EQ 'dustem_create_freefree',count) +; IF count NE 0 THEN !dustem_idl_freefree=1 +; ind=where(fct EQ 'dustem_create_synchrotron',count) +; IF count NE 0 THEN !dustem_idl_synchrotron=1 ;stop +; +; +; ind=where(fctpl EQ 'dustem_create_continuum',count) +; IF count NE 0 THEN !dustem_idl_continuum=1 +; ind=where(fctpl EQ 'dustem_create_freefree',count) +; IF count NE 0 THEN !dustem_idl_freefree=1 +; ind=where(fctpl EQ 'dustem_create_synchrotron',count) +; IF count NE 0 THEN !dustem_idl_synchrotron=1 +; +; + + + ;=== SET (*!dustem_fit).param_func VALUES ; (*!dustem_fit).param_func = 0 for the normal Fortran parameters ; (*!dustem_fit).param_func = 1 for the first plugin function ; (*!dustem_fit).param_func = 2 for the second plugin function ; etc ... + +;if we were to change the use of key and values this part will have to be modified +;to account for the fact that the string includes more than one keyword after the parameter string + + (*!dustem_fit).param_func=ptr_new(replicate(0.,nparam)) ind = 1. fct_prev = '' @@ -96,4 +127,5 @@ FOR i=0L,nparam-1 DO BEGIN ENDIF ENDFOR + END diff --git a/src/idl/dustem_set_params.pro b/src/idl/dustem_set_params.pro old mode 100644 new mode 100755 index 6e40c44..6450877 --- a/src/idl/dustem_set_params.pro +++ b/src/idl/dustem_set_params.pro @@ -30,8 +30,18 @@ FOR i=0L,Nparams-1 DO BEGIN 'PLUGIN': BEGIN length=strlen((*(*!dustem_fit).param_descs)(i)) strr=strmid((*(*!dustem_fit).param_descs)(i),14,length-16) ;This is not very clean programming .... + + ;strr= strupcase(strmid(strmid((*(*!dustem_fit).param_descs)(i),0,strlen((*(*!dustem_fit).param_descs)(i))-2),14)) + + k=where(tag_names(*!dustem_scope) eq strupcase(strr), countt) + + ; stop - IF strr NE 'continuum' AND strr NE 'freefree' AND strr NE 'synchrotron' THEN BEGIN ;This is not very clean programming .... + + ;IF strr NE 'continuum' AND strr NE 'freefree' AND strr NE 'synchrotron' AND strr NE 'powerlaw' THEN BEGIN ;This is not very clean programming .... + + IF countt EQ 0 THEN BEGIN + IF strr eq 'isrf2' then strr = 'isrf' IF !dustem_which EQ 'VERSTRAETE' THEN BEGIN ddir=!dustem_dat+'les_DAT/' diff --git a/src/idl/dustem_sort_params.pro b/src/idl/dustem_sort_params.pro old mode 100644 new mode 100755 index 1a36343..1a36343 --- a/src/idl/dustem_sort_params.pro +++ b/src/idl/dustem_sort_params.pro diff --git a/src/idl/dustem_variational_study_readme.pro b/src/idl/dustem_variational_study_readme.pro old mode 100644 new mode 100755 index 267f2dc..267f2dc --- a/src/idl/dustem_variational_study_readme.pro +++ b/src/idl/dustem_variational_study_readme.pro diff --git a/src/idl/dustem_write_align.pro b/src/idl/dustem_write_align.pro old mode 100644 new mode 100755 index 1490fa9..1490fa9 --- a/src/idl/dustem_write_align.pro +++ b/src/idl/dustem_write_align.pro diff --git a/src/idl/dustem_write_all.pro b/src/idl/dustem_write_all.pro old mode 100644 new mode 100755 index 70137c1..1aba60a --- a/src/idl/dustem_write_all.pro +++ b/src/idl/dustem_write_all.pro @@ -52,7 +52,7 @@ IF !dustem_which EQ 'VERSTRAETE' THEN BEGIN ENDIF ;IF getenv('DUSTEM_WHICH') EQ 'WEB3p8' THEN BEGIN -IF !dustem_which EQ 'WEB3p8' THEN BEGIN +IF !dustem_which EQ 'WEB3p8' THEN BEGIN ; changed this as well dustem_write_all_web3p8,st,dir_out goto,sortie ENDIF diff --git a/src/idl/dustem_write_all.pro.~1.5.~ b/src/idl/dustem_write_all.pro.~1.5.~ old mode 100644 new mode 100755 index 70137c1..70137c1 --- a/src/idl/dustem_write_all.pro.~1.5.~ +++ b/src/idl/dustem_write_all.pro.~1.5.~ diff --git a/src/idl/dustem_write_all_lv.pro b/src/idl/dustem_write_all_lv.pro old mode 100644 new mode 100755 index 6035776..6035776 --- a/src/idl/dustem_write_all_lv.pro +++ b/src/idl/dustem_write_all_lv.pro diff --git a/src/idl/dustem_write_all_web3p8.pro b/src/idl/dustem_write_all_web3p8.pro old mode 100644 new mode 100755 index 8b6aa6f..221da32 --- a/src/idl/dustem_write_all_web3p8.pro +++ b/src/idl/dustem_write_all_web3p8.pro @@ -1,8 +1,8 @@ PRO dustem_write_all_web3p8,st,dir_out -dir_out_dat=dir_out+'/data/' -dir_out_qabs=dir_out+'/oprop/' -dir_out_capa=dir_out+'/hcap/' +dir_out_dat=dir_out+'data/' +dir_out_qabs=dir_out+'oprop/' +dir_out_capa=dir_out+'hcap/' ;== ISRF file_out=dir_out_dat+'ISRF.DAT' @@ -14,11 +14,14 @@ dustem_write_lambda,file_out,st.lambda ;== GRAIN file_out=dir_out_dat+'GRAIN.DAT' + dustem_write_grain_web3p8,file_out,st.grains ;== GAS file_out=dir_out_dat+'GAS.DAT' -dustem_write_gas,file_out,st.gas +print, tag_names(st) +print, n_tags(st) +dustem_write_gas,file_out,st.GAS ;stop diff --git a/src/idl/dustem_write_calor.pro b/src/idl/dustem_write_calor.pro old mode 100644 new mode 100755 index 954488d..954488d --- a/src/idl/dustem_write_calor.pro +++ b/src/idl/dustem_write_calor.pro diff --git a/src/idl/dustem_write_calor_lv.pro b/src/idl/dustem_write_calor_lv.pro old mode 100644 new mode 100755 index 6aaeebb..6aaeebb --- a/src/idl/dustem_write_calor_lv.pro +++ b/src/idl/dustem_write_calor_lv.pro diff --git a/src/idl/dustem_write_chrg.pro b/src/idl/dustem_write_chrg.pro old mode 100644 new mode 100755 index 90feea2..90feea2 --- a/src/idl/dustem_write_chrg.pro +++ b/src/idl/dustem_write_chrg.pro diff --git a/src/idl/dustem_write_gas.pro b/src/idl/dustem_write_gas.pro old mode 100644 new mode 100755 index 59ef59e..eb9f326 --- a/src/idl/dustem_write_gas.pro +++ b/src/idl/dustem_write_gas.pro @@ -15,6 +15,7 @@ PRO dustem_write_gas,file,st ; -1.3000e-05 12.0107e0 1e0 1.54 ;stop +; I'm going to modify this Ncomments=n_elements(st.comments) diff --git a/src/idl/dustem_write_gemissiv.pro b/src/idl/dustem_write_gemissiv.pro old mode 100644 new mode 100755 index 7311c1a..7311c1a --- a/src/idl/dustem_write_gemissiv.pro +++ b/src/idl/dustem_write_gemissiv.pro diff --git a/src/idl/dustem_write_grain.pro b/src/idl/dustem_write_grain.pro old mode 100644 new mode 100755 index bd374f1..aceb4ab --- a/src/idl/dustem_write_grain.pro +++ b/src/idl/dustem_write_grain.pro @@ -3,7 +3,7 @@ PRO dustem_write_grain,file,st ;stop message,'Obsolete',/continue -stop +;stop OPENW,unit,file,/get_lun diff --git a/src/idl/dustem_write_grain_lv.pro b/src/idl/dustem_write_grain_lv.pro old mode 100644 new mode 100755 index 8f13696..8f13696 --- a/src/idl/dustem_write_grain_lv.pro +++ b/src/idl/dustem_write_grain_lv.pro diff --git a/src/idl/dustem_write_grain_web3p8.pro b/src/idl/dustem_write_grain_web3p8.pro old mode 100644 new mode 100755 index e4256b9..e4256b9 --- a/src/idl/dustem_write_grain_web3p8.pro +++ b/src/idl/dustem_write_grain_web3p8.pro diff --git a/src/idl/dustem_write_grain_web3p8.pro.~1.2.~ b/src/idl/dustem_write_grain_web3p8.pro.~1.2.~ old mode 100644 new mode 100755 index a7b723b..a7b723b --- a/src/idl/dustem_write_grain_web3p8.pro.~1.2.~ +++ b/src/idl/dustem_write_grain_web3p8.pro.~1.2.~ diff --git a/src/idl/dustem_write_ionfrac.pro b/src/idl/dustem_write_ionfrac.pro old mode 100644 new mode 100755 index d7931eb..d7931eb --- a/src/idl/dustem_write_ionfrac.pro +++ b/src/idl/dustem_write_ionfrac.pro diff --git a/src/idl/dustem_write_isrf.pro b/src/idl/dustem_write_isrf.pro old mode 100644 new mode 100755 index 2e15f13..2e15f13 --- a/src/idl/dustem_write_isrf.pro +++ b/src/idl/dustem_write_isrf.pro diff --git a/src/idl/dustem_write_isrf_lv.pro b/src/idl/dustem_write_isrf_lv.pro old mode 100644 new mode 100755 index 657b3a2..657b3a2 --- a/src/idl/dustem_write_isrf_lv.pro +++ b/src/idl/dustem_write_isrf_lv.pro diff --git a/src/idl/dustem_write_lambda.pro b/src/idl/dustem_write_lambda.pro old mode 100644 new mode 100755 index 832a529..832a529 --- a/src/idl/dustem_write_lambda.pro +++ b/src/idl/dustem_write_lambda.pro diff --git a/src/idl/dustem_write_mix.pro b/src/idl/dustem_write_mix.pro old mode 100644 new mode 100755 index ec3ec38..ec3ec38 --- a/src/idl/dustem_write_mix.pro +++ b/src/idl/dustem_write_mix.pro diff --git a/src/idl/dustem_write_pol.pro b/src/idl/dustem_write_pol.pro old mode 100644 new mode 100755 index b142b58..b142b58 --- a/src/idl/dustem_write_pol.pro +++ b/src/idl/dustem_write_pol.pro diff --git a/src/idl/dustem_write_propmass.pro b/src/idl/dustem_write_propmass.pro old mode 100644 new mode 100755 index b07746e..b07746e --- a/src/idl/dustem_write_propmass.pro +++ b/src/idl/dustem_write_propmass.pro diff --git a/src/idl/dustem_write_qabs.pro 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a/src/idl_misc/JPBLib_for_Dustemwrap/Healpix_additions/healp_drizzle.pro b/src/idl_misc/JPBLib_for_Dustemwrap/Healpix_additions/healp_drizzle.pro old mode 100644 new mode 100755 index 1079440..1079440 --- a/src/idl_misc/JPBLib_for_Dustemwrap/Healpix_additions/healp_drizzle.pro +++ b/src/idl_misc/JPBLib_for_Dustemwrap/Healpix_additions/healp_drizzle.pro diff --git a/src/idl_misc/JPBLib_for_Dustemwrap/Healpix_additions/healp_drizzle2.pro b/src/idl_misc/JPBLib_for_Dustemwrap/Healpix_additions/healp_drizzle2.pro old mode 100644 new mode 100755 index cf273ce..cf273ce --- a/src/idl_misc/JPBLib_for_Dustemwrap/Healpix_additions/healp_drizzle2.pro +++ b/src/idl_misc/JPBLib_for_Dustemwrap/Healpix_additions/healp_drizzle2.pro diff --git a/src/idl_misc/JPBLib_for_Dustemwrap/Healpix_additions/healp_drizzle3.pro b/src/idl_misc/JPBLib_for_Dustemwrap/Healpix_additions/healp_drizzle3.pro old mode 100644 new mode 100755 index 650016a..650016a --- 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a/src/idl_misc/JPBLib_for_Dustemwrap/Healpix_additions/healp_fits_interpix2.pro b/src/idl_misc/JPBLib_for_Dustemwrap/Healpix_additions/healp_fits_interpix2.pro old mode 100644 new mode 100755 index 2e8d7e0..2e8d7e0 --- a/src/idl_misc/JPBLib_for_Dustemwrap/Healpix_additions/healp_fits_interpix2.pro +++ b/src/idl_misc/JPBLib_for_Dustemwrap/Healpix_additions/healp_fits_interpix2.pro diff --git a/src/idl_misc/JPBLib_for_Dustemwrap/Healpix_additions/healp_outer_outline.pro b/src/idl_misc/JPBLib_for_Dustemwrap/Healpix_additions/healp_outer_outline.pro old mode 100644 new mode 100755 index 3b19030..3b19030 --- a/src/idl_misc/JPBLib_for_Dustemwrap/Healpix_additions/healp_outer_outline.pro +++ b/src/idl_misc/JPBLib_for_Dustemwrap/Healpix_additions/healp_outer_outline.pro diff --git a/src/idl_misc/JPBLib_for_Dustemwrap/Healpix_additions/healp_phi_theta2coo.pro b/src/idl_misc/JPBLib_for_Dustemwrap/Healpix_additions/healp_phi_theta2coo.pro old mode 100644 new mode 100755 index 34b1167..34b1167 --- a/src/idl_misc/JPBLib_for_Dustemwrap/Healpix_additions/healp_phi_theta2coo.pro +++ b/src/idl_misc/JPBLib_for_Dustemwrap/Healpix_additions/healp_phi_theta2coo.pro diff --git a/src/idl_misc/JPBLib_for_Dustemwrap/Healpix_additions/healp_smooth.pro b/src/idl_misc/JPBLib_for_Dustemwrap/Healpix_additions/healp_smooth.pro old mode 100644 new mode 100755 index 14c0542..14c0542 --- a/src/idl_misc/JPBLib_for_Dustemwrap/Healpix_additions/healp_smooth.pro +++ b/src/idl_misc/JPBLib_for_Dustemwrap/Healpix_additions/healp_smooth.pro diff --git a/src/idl_misc/JPBLib_for_Dustemwrap/Healpix_additions/healpix2fitsheader.pro b/src/idl_misc/JPBLib_for_Dustemwrap/Healpix_additions/healpix2fitsheader.pro old mode 100644 new mode 100755 index b110a1c..b110a1c --- a/src/idl_misc/JPBLib_for_Dustemwrap/Healpix_additions/healpix2fitsheader.pro +++ b/src/idl_misc/JPBLib_for_Dustemwrap/Healpix_additions/healpix2fitsheader.pro diff --git a/src/idl_misc/JPBLib_for_Dustemwrap/Healpix_additions/inter_poly_box.pro 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a/src/idl_misc/JPBLib_for_Dustemwrap/Healpix_additions/sort_by_phase.pro b/src/idl_misc/JPBLib_for_Dustemwrap/Healpix_additions/sort_by_phase.pro old mode 100644 new mode 100755 index 5525383..5525383 --- a/src/idl_misc/JPBLib_for_Dustemwrap/Healpix_additions/sort_by_phase.pro +++ b/src/idl_misc/JPBLib_for_Dustemwrap/Healpix_additions/sort_by_phase.pro diff --git a/src/idl_misc/JPBLib_for_Dustemwrap/Healpix_additions/struct2outline.pro b/src/idl_misc/JPBLib_for_Dustemwrap/Healpix_additions/struct2outline.pro old mode 100644 new mode 100755 index 4f9462f..4f9462f --- a/src/idl_misc/JPBLib_for_Dustemwrap/Healpix_additions/struct2outline.pro +++ b/src/idl_misc/JPBLib_for_Dustemwrap/Healpix_additions/struct2outline.pro diff --git a/src/idl_misc/JPBLib_for_Dustemwrap/Healpix_additions/structarray2outline.pro b/src/idl_misc/JPBLib_for_Dustemwrap/Healpix_additions/structarray2outline.pro old mode 100644 new mode 100755 index d85cb2d..d85cb2d --- a/src/idl_misc/JPBLib_for_Dustemwrap/Healpix_additions/structarray2outline.pro +++ b/src/idl_misc/JPBLib_for_Dustemwrap/Healpix_additions/structarray2outline.pro diff --git a/src/idl_misc/JPBLib_for_Dustemwrap/Healpix_additions/test_drizz_healpix2healpix.pro b/src/idl_misc/JPBLib_for_Dustemwrap/Healpix_additions/test_drizz_healpix2healpix.pro old mode 100644 new mode 100755 index 65f0c56..65f0c56 --- a/src/idl_misc/JPBLib_for_Dustemwrap/Healpix_additions/test_drizz_healpix2healpix.pro +++ b/src/idl_misc/JPBLib_for_Dustemwrap/Healpix_additions/test_drizz_healpix2healpix.pro diff --git a/src/idl_misc/JPBLib_for_Dustemwrap/Healpix_additions/triangles_inter.pro b/src/idl_misc/JPBLib_for_Dustemwrap/Healpix_additions/triangles_inter.pro old mode 100644 new mode 100755 index a15a7c1..a15a7c1 --- a/src/idl_misc/JPBLib_for_Dustemwrap/Healpix_additions/triangles_inter.pro +++ b/src/idl_misc/JPBLib_for_Dustemwrap/Healpix_additions/triangles_inter.pro diff --git a/src/idl_misc/JPBLib_for_Dustemwrap/Healpix_additions/try_drizzle.pro b/src/idl_misc/JPBLib_for_Dustemwrap/Healpix_additions/try_drizzle.pro old mode 100644 new mode 100755 index 720a1c3..720a1c3 --- a/src/idl_misc/JPBLib_for_Dustemwrap/Healpix_additions/try_drizzle.pro +++ b/src/idl_misc/JPBLib_for_Dustemwrap/Healpix_additions/try_drizzle.pro diff --git a/src/idl_misc/JPBLib_for_Dustemwrap/Healpix_additions/try_drizzle.scr b/src/idl_misc/JPBLib_for_Dustemwrap/Healpix_additions/try_drizzle.scr old mode 100644 new mode 100755 index 2ef10b6..2ef10b6 --- a/src/idl_misc/JPBLib_for_Dustemwrap/Healpix_additions/try_drizzle.scr +++ b/src/idl_misc/JPBLib_for_Dustemwrap/Healpix_additions/try_drizzle.scr diff --git a/src/idl_misc/JPBLib_for_Dustemwrap/Healpix_additions/try_drizzle_iris.pro b/src/idl_misc/JPBLib_for_Dustemwrap/Healpix_additions/try_drizzle_iris.pro old mode 100644 new mode 100755 index 2845cce..2845cce --- a/src/idl_misc/JPBLib_for_Dustemwrap/Healpix_additions/try_drizzle_iris.pro +++ b/src/idl_misc/JPBLib_for_Dustemwrap/Healpix_additions/try_drizzle_iris.pro diff --git a/src/idl_misc/JPBLib_for_Dustemwrap/Healpix_additions/ud_grade_cut4.pro b/src/idl_misc/JPBLib_for_Dustemwrap/Healpix_additions/ud_grade_cut4.pro old mode 100644 new mode 100755 index 370dab1..370dab1 --- a/src/idl_misc/JPBLib_for_Dustemwrap/Healpix_additions/ud_grade_cut4.pro +++ b/src/idl_misc/JPBLib_for_Dustemwrap/Healpix_additions/ud_grade_cut4.pro diff --git a/src/idl_misc/JPBLib_for_Dustemwrap/Help/Html/CVS/Entries b/src/idl_misc/JPBLib_for_Dustemwrap/Help/Html/CVS/Entries old mode 100644 new mode 100755 index 62dfd9d..62dfd9d --- a/src/idl_misc/JPBLib_for_Dustemwrap/Help/Html/CVS/Entries +++ b/src/idl_misc/JPBLib_for_Dustemwrap/Help/Html/CVS/Entries diff --git a/src/idl_misc/JPBLib_for_Dustemwrap/Help/Html/CVS/Repository b/src/idl_misc/JPBLib_for_Dustemwrap/Help/Html/CVS/Repository old mode 100644 new mode 100755 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a/src/idl_misc/JPBLib_for_Dustemwrap/ISSA/issa_all_pos.xcat +++ b/src/idl_misc/JPBLib_for_Dustemwrap/ISSA/issa_all_pos.xcat diff --git a/src/idl_misc/JPBLib_for_Dustemwrap/Image_Display/Aladin/aladin.pro b/src/idl_misc/JPBLib_for_Dustemwrap/Image_Display/Aladin/aladin.pro old mode 100644 new mode 100755 index 7a4fcff..7a4fcff --- a/src/idl_misc/JPBLib_for_Dustemwrap/Image_Display/Aladin/aladin.pro +++ b/src/idl_misc/JPBLib_for_Dustemwrap/Image_Display/Aladin/aladin.pro diff --git a/src/idl_misc/JPBLib_for_Dustemwrap/Image_Display/Pistou/add_pistou_sphere_xml.pro b/src/idl_misc/JPBLib_for_Dustemwrap/Image_Display/Pistou/add_pistou_sphere_xml.pro old mode 100644 new mode 100755 index f0e6497..f0e6497 --- a/src/idl_misc/JPBLib_for_Dustemwrap/Image_Display/Pistou/add_pistou_sphere_xml.pro +++ b/src/idl_misc/JPBLib_for_Dustemwrap/Image_Display/Pistou/add_pistou_sphere_xml.pro diff --git a/src/idl_misc/JPBLib_for_Dustemwrap/Image_Display/Pistou/do_pistou_color_tables.pro 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a/src/idl_misc/JPBLib_for_Dustemwrap/Image_Display/Pistou/gen_pistou_session1_v1.0b.xml +++ b/src/idl_misc/JPBLib_for_Dustemwrap/Image_Display/Pistou/gen_pistou_session1_v1.0b.xml diff --git a/src/idl_misc/JPBLib_for_Dustemwrap/Image_Display/Pistou/gen_pistou_session1_v1.0bad.xml b/src/idl_misc/JPBLib_for_Dustemwrap/Image_Display/Pistou/gen_pistou_session1_v1.0bad.xml old mode 100644 new mode 100755 index cbdb32f..cbdb32f --- a/src/idl_misc/JPBLib_for_Dustemwrap/Image_Display/Pistou/gen_pistou_session1_v1.0bad.xml +++ b/src/idl_misc/JPBLib_for_Dustemwrap/Image_Display/Pistou/gen_pistou_session1_v1.0bad.xml diff --git a/src/idl_misc/JPBLib_for_Dustemwrap/Image_Display/Pistou/make_pistou_color_table_xml.pro b/src/idl_misc/JPBLib_for_Dustemwrap/Image_Display/Pistou/make_pistou_color_table_xml.pro old mode 100644 new mode 100755 index c3e93e4..c3e93e4 --- a/src/idl_misc/JPBLib_for_Dustemwrap/Image_Display/Pistou/make_pistou_color_table_xml.pro +++ 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--git a/src/idl_misc/coyote_for_Dustemwrap/cggetcolorstate.pro b/src/idl_misc/coyote_for_Dustemwrap/cggetcolorstate.pro old mode 100644 new mode 100755 index b705172..b705172 --- a/src/idl_misc/coyote_for_Dustemwrap/cggetcolorstate.pro +++ b/src/idl_misc/coyote_for_Dustemwrap/cggetcolorstate.pro diff --git a/src/idl_misc/coyote_for_Dustemwrap/cggoogle_metersperpixel.pro b/src/idl_misc/coyote_for_Dustemwrap/cggoogle_metersperpixel.pro old mode 100644 new mode 100755 index 697fec0..697fec0 --- a/src/idl_misc/coyote_for_Dustemwrap/cggoogle_metersperpixel.pro +++ b/src/idl_misc/coyote_for_Dustemwrap/cggoogle_metersperpixel.pro diff --git a/src/idl_misc/coyote_for_Dustemwrap/cggooglemapmarker__define.pro b/src/idl_misc/coyote_for_Dustemwrap/cggooglemapmarker__define.pro old mode 100644 new mode 100755 index a82eb20..a82eb20 --- a/src/idl_misc/coyote_for_Dustemwrap/cggooglemapmarker__define.pro +++ b/src/idl_misc/coyote_for_Dustemwrap/cggooglemapmarker__define.pro diff --git a/src/idl_misc/coyote_for_Dustemwrap/cggooglemapwidget.pro b/src/idl_misc/coyote_for_Dustemwrap/cggooglemapwidget.pro old mode 100644 new mode 100755 index 7bf349b..7bf349b --- a/src/idl_misc/coyote_for_Dustemwrap/cggooglemapwidget.pro +++ b/src/idl_misc/coyote_for_Dustemwrap/cggooglemapwidget.pro diff --git a/src/idl_misc/coyote_for_Dustemwrap/cggooglemapwidget__define.pro b/src/idl_misc/coyote_for_Dustemwrap/cggooglemapwidget__define.pro old mode 100644 new mode 100755 index 0da6e1b..0da6e1b --- a/src/idl_misc/coyote_for_Dustemwrap/cggooglemapwidget__define.pro +++ b/src/idl_misc/coyote_for_Dustemwrap/cggooglemapwidget__define.pro diff --git a/src/idl_misc/coyote_for_Dustemwrap/cggraphicskeywords__define.pro b/src/idl_misc/coyote_for_Dustemwrap/cggraphicskeywords__define.pro old mode 100644 new mode 100755 index cf60c6b..cf60c6b --- a/src/idl_misc/coyote_for_Dustemwrap/cggraphicskeywords__define.pro +++ b/src/idl_misc/coyote_for_Dustemwrap/cggraphicskeywords__define.pro diff --git a/src/idl_misc/coyote_for_Dustemwrap/cggreek.pro b/src/idl_misc/coyote_for_Dustemwrap/cggreek.pro old mode 100644 new mode 100755 index 2262c69..2262c69 --- a/src/idl_misc/coyote_for_Dustemwrap/cggreek.pro +++ b/src/idl_misc/coyote_for_Dustemwrap/cggreek.pro diff --git a/src/idl_misc/coyote_for_Dustemwrap/cghasimagemagick.pro b/src/idl_misc/coyote_for_Dustemwrap/cghasimagemagick.pro old mode 100644 new mode 100755 index 677fd96..677fd96 --- a/src/idl_misc/coyote_for_Dustemwrap/cghasimagemagick.pro +++ b/src/idl_misc/coyote_for_Dustemwrap/cghasimagemagick.pro diff --git a/src/idl_misc/coyote_for_Dustemwrap/cghistogram.pro b/src/idl_misc/coyote_for_Dustemwrap/cghistogram.pro old mode 100644 new mode 100755 index a62156d..a62156d --- a/src/idl_misc/coyote_for_Dustemwrap/cghistogram.pro +++ b/src/idl_misc/coyote_for_Dustemwrap/cghistogram.pro diff --git a/src/idl_misc/coyote_for_Dustemwrap/cghistoplot.pro b/src/idl_misc/coyote_for_Dustemwrap/cghistoplot.pro old mode 100644 new mode 100755 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a/src/idl_misc/coyote_for_Dustemwrap/cgjulian2date.pro b/src/idl_misc/coyote_for_Dustemwrap/cgjulian2date.pro old mode 100644 new mode 100755 index 7f9f057..7f9f057 --- a/src/idl_misc/coyote_for_Dustemwrap/cgjulian2date.pro +++ b/src/idl_misc/coyote_for_Dustemwrap/cgjulian2date.pro diff --git a/src/idl_misc/coyote_for_Dustemwrap/cgkml2kmz.pro b/src/idl_misc/coyote_for_Dustemwrap/cgkml2kmz.pro old mode 100644 new mode 100755 index b97604a..b97604a --- a/src/idl_misc/coyote_for_Dustemwrap/cgkml2kmz.pro +++ b/src/idl_misc/coyote_for_Dustemwrap/cgkml2kmz.pro diff --git a/src/idl_misc/coyote_for_Dustemwrap/cgkml_feature__define.pro b/src/idl_misc/coyote_for_Dustemwrap/cgkml_feature__define.pro old mode 100644 new mode 100755 index b1fef56..b1fef56 --- a/src/idl_misc/coyote_for_Dustemwrap/cgkml_feature__define.pro +++ b/src/idl_misc/coyote_for_Dustemwrap/cgkml_feature__define.pro diff --git a/src/idl_misc/coyote_for_Dustemwrap/cgkml_file__define.pro 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