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src/idl/dustemcgwin_dataset.pro 237 KB
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PRO dustemcgwin_dataset, st, dustem_interp, dustem_spec, extra_spec, dataset=dataset, norm=norm, refresh=refresh, nodata=nodata, position=position,positive_only=positive_only, negative_only=negative_only, _extra=_extra
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;############################################################################################
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if !run_pol then begin
    if isa(position) then begin
        if keyword_set(norm) then pospltxt = [position(0)+0.02,position(3)-0.02] else pospltxt = [position(0)+0.02,position(3)-0.03]  
    endif
endif else begin
    if isa(position) then pospltxt = [position(0)+0.02,position(3)-0.05] ;hard-coded but we can find a way 
endelse 

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wavs=dustem_get_wavelengths()
n_plgns = n_tags(*!dustem_plugin)
Ngrains=(*!dustem_params).Ngrains
use_cols=dustem_grains_colors(Ngrains,/cgplot)
use_cols[1]='Cornflower'
fact = 1.e4*(*!dustem_HCD)/(4.*!pi)/(3.e8/1.e-6/st.sed.wav)*1.e20/1.e7 ; st.sed.wav and st.polsed.wav should remain the same
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degtorad = !pi/180 ;factor that the arctan will be devided by in order to have an axis in degrees. Talk to JP maybe he wants angle in radians.
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clrs_plgns = ['Rosy Brown','Gold','Light Coral','Slate Blue','Dark Khaki','Salmon','Dark Green'] ;FOR NOW
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;NB: plugins need to have different colors for extinction because they are not the same plugins. New array required.

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scopes=tag_names((*!dustem_plugin))
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tgnms_extra = tag_names(_extra)
ind_xr = where(strmid(tgnms_extra,0,2) eq 'XR')
ind_yr = where(strmid(tgnms_extra,0,2) eq 'YR')
if ind_xr EQ -1 then xr=[1.00E+00,1.00E+05] else xr=(_extra.(ind_xr))
if ind_yr EQ -1 then yr=[5.00E-03,1.00E+08] else yr=(_extra.(ind_yr))
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frmt0='(A46)'
frmt1='(1E11.4)'
frmt2='(10F10.2)'
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;############################################################################################
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;NB: SUSPETING A MAJR ERROR IN THE MATCHING OF STRUCTURE (FOR THE PLOTTING OF THE HIDDEN POINTS)
;INVERTING ALL THE INDICES THAT ARE CONCERNED BY THIS. 
;THIS CAN CREATE ERRORS (EVEN THOUGH IT WAS WRONG AND WORKE) SO REMEMBER YOU DID THIS. 

  


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if keyword_set(dataset) then begin
;!run_pol is implied for QSED/USED/POLSED etc...
    Case strupcase(dataset) of 
    
        'SED': begin
            
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            vectw=DINDGEN(1001)*(alog10(1E7) - alog10(1E5))/(1000 - 1L) + alog10(1E5)
            vectw=10^vectw[1:*]
            vectw=[wavs,vectw]
            vectx=vectw*0+1
            
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            idx_filt=where((*!dustem_data.sed).filt_names NE 'SPECTRUM',ct_filt)
            idx_spec=where((*!dustem_data.sed).filt_names EQ 'SPECTRUM',ct_spec)
            
            ;#1) get the plotting keywords (pertaining to each data set) @here when the _extra structure is ready
            
            if keyword_set(nodata) then begin ;when the data is not present
            
                if keyword_set(norm) then begin ;normalized plot
                    
                    xtit=textoidl('\lambda (\mum)')
                    if !run_pol then xtit = ''
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                    cgplot,vectw,vectx,/xlog,/ys,xs=1,pos=position,noerase=1,xtickformat='(A1)',color='Black',xr=xr,xtit=xtit,yr=[0.0,2.0],yticks=2,ymino=2,xticklen=0.1,ytickformat='(F6.2)',charsize=1.0
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                    xyouts,pospltxt[0],pospltxt[1],textoidl('norm'),color=0,/normal,charsize=1.1                        
                
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                endif ;else begin ;normal plot
                
                if not keyword_set(norm) then begin
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                    ;/NODATA    
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                    cgplot,wavs,wavs,/nodata,/ylog,/xlog,/ys,xs=9,pos=position,noerase=1,charsize=1.15,xtickformat='(A1)',color='Powder Blue',xr=xr,xtit='',yr=yr,psym=8,syms=0.8  
                    cgaxis, xaxis=1 ,xlog=1 ,xrange=((!const.c*1E6/xr)*1E-9),charsize=1.15,title=textoidl('\nu (GHz)'),xticklen=0.05,xminor=10
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                    xyouts,pospltxt[0],pospltxt[1],textoidl('I_{\nu} (MJy/sr)'),color=0,/normal,charsize=1.3;,charthick=2.0
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                ;endelse  
                endif
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            endif ;else begin ;when the data is present - to be replaced by if to test as a solution to the refreshing problem
            if not keyword_set(nodata) then begin
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                if keyword_set(norm) then begin 
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                    if keyword_set(refresh) then begin ;The data points in the plot that are being refreshed 
                        
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                        IF ct_spec NE 0 THEN BEGIN
                            xx=((*!dustem_data.sed).wav)[idx_spec]
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                            yy=dustem_interp[idx_spec]
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                            rms=3.*((*!dustem_data.sed).sigma)(idx_spec)/2.
                            cgoplot,xx,((*!dustem_data.sed).values)[idx_spec]/yy,color='Powder Blue',psym=16,syms=0.8,noerase=1,pos=position
                            cgerrplot,((*!dustem_data.sed).wav)(idx_spec),(((*!dustem_data.sed).values)[idx_spec]-rms)/yy,(((*!dustem_data.sed).values)[idx_spec]+rms)/yy,color='Powder Blue'
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                        ENDIF
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                        IF ct_filt NE 0 THEN BEGIN
                            xx=((*!dustem_data.sed).wav)[idx_filt]
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                            yy=dustem_interp[idx_filt]
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                            rms=3.*((*!dustem_data.sed).sigma)(idx_filt)/2. 
                            cgoplot,xx,((*!dustem_data.sed).values)[idx_filt]/yy,psym=16,color='Dodger Blue',syms=0.8,noerase=1,pos=position
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                            cgerrplot,((*!dustem_data.sed).wav)(idx_filt),(((*!dustem_data.sed).values)[idx_filt]-rms)/yy,(((*!dustem_data.sed).values)[idx_filt]+rms)/yy,color='Dodger Blue';,/overplot 
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                        ENDIF
                            
                        
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                    endif ;else begin ;The data points in the plot that remain unchanged ; UNNECESSARY BLOCK but needede to limit erros when calls are made with missing keywords.
                        ;stop
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                    if not keyword_set(refresh) then begin 
                        ;stop   
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                        xtit=textoidl('\lambda (\mum)')
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                        if !run_pol then begin
                            xtit = ''
                            xtickformat='(A1)'
                        endif else xtickformat='(F10.2)' ;MAYBE YOU'LL CHANGE THIS FORMAT TO EXPONENTIAL NOTATION
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                        cgplot,vectw,vectx,/xlog,/ys,xs=1,pos=position,noerase=1,xtickformat=xtickformat,color='Black',xr=xr,xtit=xtit,yr=[0.0,2.0],yticks=2,ymino=2,xticklen=0.1,ytickformat='(F6.2)',charsize=1.0
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                        xyouts,pospltxt[0],pospltxt[1],textoidl('norm'),color=0,/normal,charsize=1.1
                    
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                    ;endelse
                    endif
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                endif ;else begin ; normal plot
                if not keyword_set(norm) then begin        
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                    if keyword_set(refresh) then begin ;The data points in the plot are being refreshed
                        
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                        ;Plotting of the spectra of the dust species
                        FOR i=0L,Ngrains-1 DO BEGIN
                            cgoplot,st.sed.wav,st.sed.(i+1)*fact,color=use_cols[i],pos=position,noerase=1
                        ENDFOR
                        
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                        ;Plotting of the plugins.
                        for i=0L,n_plgns-1 do begin
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                            if isa((*!dustem_plugin).(0).spec) then begin 
                            
                                IF total(strsplit((*(*!dustem_plugin).(i).scope),'+',/extract) EQ 'ADD_SED') THEN begin
                                    cgoplot,st.sed.wav,((*(*!dustem_plugin).(i).spec)[*,0]),color=clrs_plgns[i],pos=position,noerase=1,linestyle=2               
                                ENDIF
                                
                            endif
                            
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                        endfor
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                        ;PLotting of the interpolates corresponding to spectrum and filter points
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                        IF ct_spec NE 0 THEN BEGIN
                        
                            xx=((*!dustem_data.sed).wav)[idx_spec]
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                            yy=dustem_interp[idx_spec]
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                            cgoplot,xx,yy,color='Indian Red',pos=position,psym=7,syms=1,noerase=1   
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                        ENDIF
                        
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                        IF ct_filt NE 0 THEN BEGIN
                            xx=((*!dustem_data.sed).wav)[idx_filt]
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                            yy=dustem_interp[idx_filt]
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                            cgoplot,xx,yy,color='red',pos=position,psym=6,syms=2,noerase=1
                        ENDIF
                        
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                        ;Plotting of the total dust emission spectrum
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                        cgoplot,st.sed.wav,dustem_spec,pos=position,noerase=1,/xlog,/ys,/xs,/ylog
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                    endif ;else begin ;The data points in the plot that remain unchanged.
                        ;stop
                    if not keyword_set(refresh) then begin
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                        ;Spectrum points are treated before for plotting reasons. 
                        if ct_spec ne 0 then begin 
                            
                            ;Plotting of spectrum data points (to be fitted)
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                            cgplot,((*!dustem_data.sed).wav)(idx_spec),((*!dustem_data.sed).values)(idx_spec),/ylog,/xlog,/ys,xs=9,pos=position,noerase=1,xtit=' ',charsize=1.15,xtickformat='(A1)',color='Powder Blue',xr=xr,yr=yr,psym=16,syms=0.8,ytickformat='dstmwrp_exp'                
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                            ;Plotting of the spectrum error points
                            rms=3.*((*!dustem_data.sed).sigma)(idx_spec)/2.
                            cgerrplot,((*!dustem_data.sed).wav)(idx_spec),((*!dustem_data.sed).values)(idx_spec)-rms,((*!dustem_data.sed).values)(idx_spec)+rms,color='Powder Blue'

                        endif
                        
                        if ct_filt ne 0 then begin
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                            ;Plotting of filter data points (to be fitted) + testing for prior plotting                         
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                            if ct_spec ne 0 then cgoplot,((*!dustem_data.sed).wav)(idx_filt),((*!dustem_data.sed).values)(idx_filt),charsize=1.15,color='Dodger Blue',psym=16,syms=0.8,pos=position,/ys,xs=9,noerase=1,xtickformat='(A1)',xr=xr,yr=yr,ytickformat='dstmwrp_exp',/ylog,/xlog else $
                                cgplot,((*!dustem_data.sed).wav)(idx_filt),((*!dustem_data.sed).values)(idx_filt),charsize=1.15,color='Dodger Blue',psym=16,syms=0.8,pos=position,/ys,xs=9,noerase=1,xtickformat='(A1)',xtit=' ',xr=xr,yr=yr,ytickformat='dstmwrp_exp',/ylog,/xlog
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                            ;Plotting of the filter error points
                            rms=3.*((*!dustem_data.sed).sigma)(idx_filt)/2.;/dustem_sed(idx_filt)
                            cgerrplot,((*!dustem_data.sed).wav)(idx_filt),((*!dustem_data.sed).values)(idx_filt)-rms,((*!dustem_data.sed).values)(idx_filt)+rms,color='Dodger Blue'
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                        endif
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                        ;Plotting of frequency axis
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                        cgaxis, xaxis=1, xlog=1, xs=1, xminor=10, xticklen=0.05, xrange=((!const.c*1E6/(_extra.(ind_xr)))*1E-9),charsize=1.15,title=textoidl('\nu (GHz)')
                        
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                        xyouts,pospltxt[0],pospltxt[1],textoidl('I_{\nu} (MJy/sr)'),color=0,/normal,charsize=1.3;,charthick=2.0
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                        ;Locating all the hidden data points (spectrum+filter)
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                        match2,((*!dustem_data.sed).wav),((*!dustem_show.sed).wav),show_sedpts,fit_sedpts ;only show_sedpts is needed
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                        idx_rmv_sed=where(show_sedpts eq -1, ct_hdnpts) ; indices of the points to hide
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                        ;Locating the hidden spectrum and filter data points                                        
                        idx_filt_hdn = where((((*!dustem_show.sed).filt_names))(idx_rmv_sed) NE 'SPECTRUM',ct_filt_hdn)
                        idx_spec_hdn = where(((*!dustem_show.sed).filt_names)(idx_rmv_sed) EQ 'SPECTRUM',ct_spec_hdn)
                         
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                        if ct_hdnpts ne 0 then begin ;Hidden data points are present 
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                            ;stop
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                            if ct_spec_hdn ne 0 then begin
                                ;Plotting of hidden spectrum data points
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                                cgoplot,(((*!dustem_show.sed).wav)[idx_rmv_sed])(idx_spec_hdn),(((*!dustem_show.sed).values)[idx_rmv_sed])(idx_spec_hdn),pos=position,/ylog,/xlog,/ys,xs=9,noerase=1,charsize=1.15,xtickformat='(A1)',color='Black',xr=xr,yr=yr,psym=16,syms=0.8
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                                ;Plotting of hidden spectrum error points
                                rms=3.*(((*!dustem_show.sed).sigma)[idx_rmv_sed])(idx_spec_hdn)/2.
                                cgerrplot,(((*!dustem_show.sed).wav)[idx_rmv_sed])(idx_spec_hdn),(((*!dustem_show.sed).values)[idx_rmv_sed])(idx_spec_hdn)-rms,(((*!dustem_show.sed).values)[idx_rmv_sed])(idx_spec_hdn)+rms,color='Black'
                            endif                                            
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                            if ct_filt_hdn then begin
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                            ;Plotting of hidden filter data points 
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                                cgoplot,(((*!dustem_show.sed).wav)[idx_rmv_sed])(idx_filt_hdn),(((*!dustem_show.sed).values)[idx_rmv_sed])(idx_filt_hdn),pos=position,/ylog,/xlog,/ys,xs=9,noerase=1,charsize=1.15,xtickformat='(A1)',color='Black',xr=xr,yr=yr,psym=16,syms=0.8                                           
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                                ;Plotting of hidden filter error point
                                rms=3.*(((*!dustem_show.sed).sigma)[idx_rmv_sed])(idx_filt_hdn)/2.
                                cgerrplot,(((*!dustem_show.sed).wav)[idx_rmv_sed])(idx_filt_hdn),(((*!dustem_show.sed).values)[idx_rmv_sed])(idx_filt_hdn)-rms,(((*!dustem_show.sed).values)[idx_rmv_sed])(idx_filt_hdn)+rms,color='Black'
                                
                            endif
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                        endif    
                        
                        
                    
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                    ;endelse 
                    endif
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                ;endelse 
                endif            
            ;endelse
            endif 
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        ;stop    
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        end
        
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        'EXT': begin ;BE VERY CAREFUL THE EXTINCTION STRUCTURE AS REDERED BY DUSTEM IS DIFFERENT THAN THE EMISSION ONE
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;             ;So far manually changing xr and yr.
;             
;             xr=[0.01,30]
;             yr=[1.00E-06,10]
            
            vectw=DINDGEN(1001)*(alog10(1E7) - alog10(1E5))/(1000 - 1L) + alog10(1E5)
            vectw=10^vectw[1:*]
            vectw=[wavs,vectw]
            vectx=vectw*0+1
            
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            idx_filt=where((*!dustem_data.ext).filt_names NE 'SPECTRUM',ct_filt)
            idx_spec=where((*!dustem_data.ext).filt_names EQ 'SPECTRUM',ct_spec)
            
            ;#1) get the plotting keywords (pertaining to each data set) @here when the _extra structure is ready
            
            if keyword_set(nodata) then begin ;when the data is not present
            
                if keyword_set(norm) then begin ;normalized plot
                    
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                    xtit=textoidl('1/\lambda (\mum^{-1})')
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                    if !run_pol then xtit = ''
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                    cgplot,1/vectw,vectx,/xlog,/ys,xs=1,pos=position,noerase=1,xtickformat='(A1)',color='Black',xr=xr,xtit=xtit,yr=[0.0,2.0],yticks=2,ymino=2,xticklen=0.1,ytickformat='(F6.2)',charsize=1.0
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                    xyouts,pospltxt[0],pospltxt[1],textoidl('norm'),color=0,/normal,charsize=1.1                        
                
                endif ;else begin ;normal plot
                
                if not keyword_set(norm) then begin
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                    ;/NODATA    
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                    cgplot,wavs,wavs,/nodata,/ylog,/xlog,/ys,xs=9,pos=position,noerase=1,charsize=1.15,xtickformat='(A1)',color='Powder Blue',xr=xr,xtit='',yr=yr,psym=8,syms=0.8  
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                    cgaxis, xaxis=1 ,xlog=1 ,xrange=((!const.c*1E6*xr)*1E-9),charsize=1.15,title=textoidl('\nu (GHz)'),xticklen=0.05,xminor=10
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                    xyouts,pospltxt[0],pospltxt[1],textoidl('\tau_{EXT}'),color=0,/normal,charsize=1.3;,charthick=2.0
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                ;endelse  
                endif
            
            endif ;else begin ;when the data is present - to be replaced by if to test as a solution to the refreshing problem
            if not keyword_set(nodata) then begin
                if keyword_set(norm) then begin 
                    
                    if keyword_set(refresh) then begin ;The data points in the plot that are being refreshed 
                        
                        IF ct_spec NE 0 THEN BEGIN
                            xx=((*!dustem_data.ext).wav)[idx_spec]
                            yy=dustem_interp[idx_spec]
                            rms=3.*((*!dustem_data.ext).sigma)(idx_spec)/2.
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                            indzero = where(yy NE 0, ct_zero)
                            IF ct_zero NE 0 THEN BEGIN
                                cgoplot,(1/xx)[indzero],(((*!dustem_data.ext).values)[idx_spec])[indzero]/yy[indzero],color='Powder Blue',psym=16,syms=0.8,noerase=1,pos=position
                                cgerrplot,(1/((*!dustem_data.ext).wav)(idx_spec))[indzero],((((*!dustem_data.ext).values)[idx_spec])[indzero]-rms[indzero])/yy[indzero],((((*!dustem_data.ext).values)[idx_spec])[indzero]+rms[indzero])/yy[indzero],color='Powder Blue'
                            ENDIF
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                        ENDIF
                        
                        IF ct_filt NE 0 THEN BEGIN ; There are no filter points for now...
                            xx=((*!dustem_data.ext).wav)[idx_filt]
                            yy=dustem_interp[idx_filt]
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                            rms=3.*((*!dustem_data.ext).sigma)(idx_filt)/2.
                            indzero = where(yy NE 0, ct_zero)
                            IF ct_zero NE 0 THEN BEGIN
                                cgoplot,(1/xx)[indzero],(((*!dustem_data.ext).values)[idx_filt])[indzero]/yy[indzero],psym=16,color='Dodger Blue',syms=0.8,noerase=1,pos=position
                                cgerrplot,(1/((*!dustem_data.ext).wav)(idx_filt))[indzero],((((*!dustem_data.ext).values)[idx_filt])[indzero]-rms[indzero])/yy[indzero],((((*!dustem_data.ext).values)[idx_filt])[indzero]+rms[indzero])/yy[indzero],color='Dodger Blue';,/overplot 
                            ENDIF
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                        ENDIF
                            
                        
                    endif ;else begin ;The data points in the plot that remain unchanged ; UNNECESSARY BLOCK but needede to limit erros when calls are made with missing keywords.
                        ;stop
                        
                    if not keyword_set(refresh) then begin 
                        ;stop   
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                        xtit=textoidl('1/\lambda (\mum^{-1})')
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                        if !run_pol then begin
                            xtit = ''
                            xtickformat='(A1)'
                        endif else xtickformat='(F10.2)' ;MAYBE YOU'LL CHANGE THIS FORMAT TO EXPONENTIAL NOTATION
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                        cgplot,1/vectw,vectx,/xlog,/ys,xs=1,pos=position,noerase=1,xtickformat=xtickformat,color='Black',xr=xr,xtit=xtit,yr=[0.0,2.0],yticks=2,ymino=2,xticklen=0.1,ytickformat='(F6.2)',charsize=1.0
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                        xyouts,pospltxt[0],pospltxt[1],textoidl('norm'),color=0,/normal,charsize=1.1
                    
                    ;endelse
                    endif
                    
                
                endif ;else begin ; normal plot
                if not keyword_set(norm) then begin        
                    if keyword_set(refresh) then begin ;The data points in the plot are being refreshed
                        
                        ;not so sure about the multiplicative factor
                        
                        ;Plotting of the spectra of the dust species
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                        FOR i=0L,Ngrains-1 DO BEGIN
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                            cgoplot,1/st.ext.wav,transpose((st.ext.(1))[i,*]+(st.ext.(2))[i,*])*(*!dustem_HCD)/1.0e21,color=use_cols[i],pos=position,noerase=1
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                        ENDFOR
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                        ;Plotting of the plugins.
                        for i=0L,n_plgns-1 do begin
                            
                            if isa((*!dustem_plugin).(0).spec) then begin 
                            
                                IF total(strsplit((*(*!dustem_plugin).(i).scope),'+',/extract) EQ 'ADD_EXT') THEN begin
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                                    cgoplot,1/st.ext.wav,((*(*!dustem_plugin).(i).spec)[*,0]),color=clrs_plgns[i],pos=position,noerase=1,linestyle=2               
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                                ENDIF
                                
                            endif
                            
                        endfor
                        
                                                
                        ;PLotting of the interpolates corresponding to spectrum and filter points
                           
                        IF ct_spec NE 0 THEN BEGIN
                        
                            xx=((*!dustem_data.ext).wav)[idx_spec]
                            yy=dustem_interp[idx_spec]
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                            cgoplot,1/xx,yy,color='Indian Red',pos=position,psym=7,syms=1,noerase=1   
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                        ENDIF
                        
                        
                        IF ct_filt NE 0 THEN BEGIN
                            xx=((*!dustem_data.ext).wav)[idx_filt]
                            yy=dustem_interp[idx_filt]
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                            cgoplot,1/xx,yy,color='red',pos=position,psym=6,syms=2,noerase=1
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                        ENDIF
                        
                        
                        ;Plotting of the total dust emission spectrum
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                        cgoplot,1/st.ext.wav,dustem_spec,pos=position,noerase=1,/xlog,/ys,/xs,/ylog
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                    endif ;else begin ;The data points in the plot that remain unchanged.
                        ;stop
                    if not keyword_set(refresh) then begin
                        ;Spectrum points are treated before for plotting reasons. 
                        if ct_spec ne 0 then begin 
                            
                            ;Plotting of spectrum data points (to be fitted)
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                            cgplot,1/((*!dustem_data.ext).wav)(idx_spec),((*!dustem_data.ext).values)(idx_spec),/ylog,/xlog,/ys,xs=9,pos=position,noerase=1,xtit=' ',charsize=1.15,xtickformat='(A1)',color='Powder Blue',xr=xr,yr=yr,psym=16,syms=0.8,ytickformat='dstmwrp_exp'                
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                            ;Plotting of the spectrum error points
                            rms=3.*((*!dustem_data.ext).sigma)(idx_spec)/2.
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                            cgerrplot,1/((*!dustem_data.ext).wav)(idx_spec),((*!dustem_data.ext).values)(idx_spec)-rms,((*!dustem_data.ext).values)(idx_spec)+rms,color='Powder Blue'
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                        endif
                        
                        if ct_filt ne 0 then begin
                        
                            ;Plotting of filter data points (to be fitted) + testing for prior plotting                         
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                            if ct_spec ne 0 then cgoplot,1/((*!dustem_data.ext).wav)(idx_filt),((*!dustem_data.ext).values)(idx_filt),charsize=1.15,color='Dodger Blue',psym=16,syms=0.8,pos=position,/ys,xs=9,noerase=1,xtickformat='(A1)',xr=xr,yr=yr,ytickformat='dstmwrp_exp',/ylog,/xlog else $
                                cgplot,1/((*!dustem_data.ext).wav)(idx_filt),((*!dustem_data.ext).values)(idx_filt),charsize=1.15,color='Dodger Blue',psym=16,syms=0.8,pos=position,/ys,xs=9,noerase=1,xtickformat='(A1)',xtit=' ',xr=xr,yr=yr,ytickformat='dstmwrp_exp',/ylog,/xlog
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                            ;Plotting of the filter error points
                            rms=3.*((*!dustem_data.ext).sigma)(idx_filt)/2.;/dustem_sed(idx_filt)
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                            cgerrplot,1/((*!dustem_data.ext).wav)(idx_filt),((*!dustem_data.ext).values)(idx_filt)-rms,((*!dustem_data.ext).values)(idx_filt)+rms,color='Dodger Blue'
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                        endif
                        
                        
                        ;Plotting of frequency axis
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                        cgaxis, xaxis=1, xlog=1, xs=1, xminor=10, xticklen=0.05, xrange=((!const.c*1E6*xr)*1E-9),charsize=1.15,title=textoidl('\nu (GHz)')
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                        xyouts,pospltxt[0],pospltxt[1],textoidl('\tau_{EXT}'),color=0,/normal,charsize=1.3;,charthick=2.0
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                        ;Locating all the hidden data points (spectrum+filter)
                        match2,((*!dustem_data.ext).wav),((*!dustem_show.ext).wav),show_sedpts,fit_sedpts ;only show_sedpts is needed
                        idx_rmv_sed=where(show_sedpts eq -1, ct_hdnpts) ; indices of the points to hide
                        ;Locating the hidden spectrum and filter data points                                        
                        idx_filt_hdn = where((((*!dustem_show.ext).filt_names))(idx_rmv_sed) NE 'SPECTRUM',ct_filt_hdn)
                        idx_spec_hdn = where(((*!dustem_show.ext).filt_names)(idx_rmv_sed) EQ 'SPECTRUM',ct_spec_hdn)
                         
                        if ct_hdnpts ne 0 then begin ;Hidden data points are present 
                            ;stop
                            if ct_spec_hdn ne 0 then begin
                                ;Plotting of hidden spectrum data points
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                                cgoplot,1/(((*!dustem_show.ext).wav)[idx_rmv_sed])(idx_spec_hdn),(((*!dustem_show.ext).values)[idx_rmv_sed])(idx_spec_hdn),pos=position,/ylog,/xlog,/ys,xs=9,noerase=1,charsize=1.15,xtickformat='(A1)',color='Black',xr=xr,yr=yr,psym=16,syms=0.8
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                                ;Plotting of hidden spectrum error points
                                rms=3.*(((*!dustem_show.ext).sigma)[idx_rmv_sed])(idx_spec_hdn)/2.
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                                cgerrplot,1/(((*!dustem_show.ext).wav)[idx_rmv_sed])(idx_spec_hdn),(((*!dustem_show.ext).values)[idx_rmv_sed])(idx_spec_hdn)-rms,(((*!dustem_show.ext).values)[idx_rmv_sed])(idx_spec_hdn)+rms,color='Black'
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                            endif                                            
                            
                            if ct_filt_hdn then begin
                            ;Plotting of hidden filter data points 
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                                cgoplot,1/(((*!dustem_show.ext).wav)[idx_rmv_sed])(idx_filt_hdn),(((*!dustem_show.ext).values)[idx_rmv_sed])(idx_filt_hdn),pos=position,/ylog,/xlog,/ys,xs=9,noerase=1,charsize=1.15,xtickformat='(A1)',color='Black',xr=xr,yr=yr,psym=16,syms=0.8                                           
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                                ;Plotting of hidden filter error point
                                rms=3.*(((*!dustem_show.ext).sigma)[idx_rmv_sed])(idx_filt_hdn)/2.
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                                cgerrplot,1/(((*!dustem_show.ext).wav)[idx_rmv_sed])(idx_filt_hdn),(((*!dustem_show.ext).values)[idx_rmv_sed])(idx_filt_hdn)-rms,(((*!dustem_show.ext).values)[idx_rmv_sed])(idx_filt_hdn)+rms,color='Black'
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                            endif
                                                           
                        endif    
                        
                        
                    
                    ;endelse 
                    endif
                
                
                ;endelse 
                endif            
            ;endelse
            endif
          
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        end
        
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        'POLEXT': begin 
            
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            vectw=DINDGEN(1001)*(alog10(1E7) - alog10(1E5))/(1000 - 1L) + alog10(1E5)
            vectw=10^vectw[1:*]
            vectw=[wavs,vectw]
            vectx=vectw*0+1
            
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            idx_filt=where((*!dustem_data.polext).filt_names NE 'SPECTRUM',ct_filt)
            idx_spec=where((*!dustem_data.polext).filt_names EQ 'SPECTRUM',ct_spec)
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            ;#1) get the plotting keywords (pertaining to each data set) @here when the _extra structure is ready
            
            if keyword_set(nodata) then begin ;when the data is not present
            
                if keyword_set(norm) then begin ;normalized plot
                    
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                    xtit=textoidl('1/\lambda (\mum^{_1})')
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                    if !run_pol then xtit = ''
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477
                    cgplot,1/vectw,vectx,/xlog,/ys,xs=1,pos=position,noerase=1,xtickformat='(A1)',color='Black',xr=xr,xtit=xtit,yr=[0.0,2.0],yticks=2,ymino=2,xticklen=0.1,ytickformat='(F6.2)',charsize=1.0
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                    xyouts,pospltxt[0],pospltxt[1],textoidl('norm'),color=0,/normal,charsize=1.1                        
                
                endif else begin ;normal plot
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                    ;/NODATA
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                    cgplot,wavs,wavs,/nodata,/ylog,/xlog,/ys,xs=9,pos=position,noerase=1,charsize=1.15,xtickformat='(A1)',color='Powder Blue',xr=xr,xtit='',yr=yr,psym=8,syms=0.8  
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                    cgaxis, xaxis=1 ,xlog=1 ,xrange=((!const.c*1E6*xr)*1E-9),charsize=1.15,title=textoidl('\nu (GHz)'),xticklen=0.05,xminor=10
                    xyouts,pospltxt[0],pospltxt[1],textoidl('\tau_{PEXT}'),color=0,/normal,charsize=1.3;,charthick=2.0
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                endelse  
                
            
            endif else begin ;when the data is present 
            
                if keyword_set(norm) then begin 
                    
                    if keyword_set(refresh) then begin ;The data points in the plot that are being refreshed 
                        
                        IF ct_spec NE 0 THEN BEGIN
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                            xx=((*!dustem_data.polext).wav)[idx_spec]
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                            yy=dustem_interp[idx_spec]
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                            rms=3.*((*!dustem_data.polext).sigma)(idx_spec)/2.
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                            indzero = where(yy NE 0, ct_zero)
                            
                            IF ct_zero NE 0 THEN BEGIN
                            
                                cgoplot,(1/xx)[indzero],(((*!dustem_data.polext).values)[idx_spec])[indzero]/yy[indzero],color='Powder Blue',psym=16,syms=0.8,noerase=1,pos=position
                                cgerrplot,(1/((*!dustem_data.polext).wav)(idx_spec))[indzero],((((*!dustem_data.polext).values)[idx_spec])[indzero]-rms[indzero])/yy[indzero],((((*!dustem_data.polext).values)[idx_spec])[indzero]+rms[indzero])/yy[indzero],color='Powder Blue'
                            
                            ENDIF
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                        ENDIF
                        
                        IF ct_filt NE 0 THEN BEGIN
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                            xx=((*!dustem_data.polext).wav)[idx_filt]
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                            yy=dustem_interp[idx_filt]
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                            rms=3.*((*!dustem_data.polext).sigma)(idx_filt)/2.
                            indzero = where(yy NE 0, ct_zero)
                            IF ct_zero NE 0 THEN BEGIN
                             
                                cgoplot,(1/xx)[indzero],(((*!dustem_data.polext).values)[idx_filt])[indzero]/yy[indzero],psym=16,color='Dodger Blue',syms=0.8,noerase=1,pos=position
                                cgerrplot,(1/((*!dustem_data.polext).wav)(idx_filt))[indzero],((((*!dustem_data.polext).values)[idx_filt])[indzero]-rms[indzero])/yy[indzero],((((*!dustem_data.polext).values)[idx_filt])[indzero]+rms[indzero])/yy[indzero],color='Dodger Blue';,/overplot 
                            
                            ENDIF
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                        ENDIF
                            
                        
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524
                    endif else begin ;The data points in the plot that remain unchanged ; UNNECESSARY BLOCK but needed to limit erros when calls are made with missing keywords.
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526
                        xtit=textoidl('1/\lambda (\mum^{-1})')
18e4331f   Ilyes Choubani   general update (f...
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                        if !run_pol then xtit = ''
afde94a3   Ilyes Choubani   general update
528
                        cgplot,1/vectw,vectx,/xlog,/ys,xs=1,pos=position,noerase=1,xtickformat='(A1)',color='Black',xr=xr,xtit=xtit,yr=[0.0,2.0],yticks=2,ymino=2,xticklen=0.1,ytickformat='(F6.2)',charsize=1.0
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                        xyouts,pospltxt[0],pospltxt[1],textoidl('norm'),color=0,/normal,charsize=1.1
                    
                    endelse
                    
                
                endif else begin ; normal plot
                        
                    if keyword_set(refresh) then begin ;The data points in the plot are being refreshed
                        
                        ;Plotting of the spectra of the dust species
                        FOR i=0L,Ngrains-1 DO BEGIN
07372e26   Ilyes Choubani   Corrected huge pl...
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                            vecto = transpose(((st.polext.(1))[i,*]+(st.polext.(2))[i,*]))
                            cgoplot,1/st.polext.wav,vecto*(*!dustem_HCD)/1.0e21,color=use_cols[i],pos=position,noerase=1
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                        ENDFOR
                        
                        ;stop
                                                
                        ;Plotting of the plugins.
                        for i=0L,n_plgns-1 do begin
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                            If isa((*!dustem_plugin).(0).spec) then begin
67bd858a   Ilyes Choubani   Replication of th...
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                                IF total(strsplit((*(*!dustem_plugin).(i).scope),'+',/extract) EQ 'ADD_POLEXT') THEN begin
afde94a3   Ilyes Choubani   general update
550
                                    cgoplot,1/st.polext.wav,sqrt(((*(*!dustem_plugin).(i).spec)[*,1])^2+((*(*!dustem_plugin).(i).spec)[*,2])^2),color=clrs_plgns[i],pos=position,noerase=1,linestyle=2               
3c479f24   Ilyes Choubani   Allowing to fix p...
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                                ENDIF 
                            endif
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                        endfor
                                                
                        ;PLotting of the interpolates corresponding to spectrum and filter points
                           
                        IF ct_spec NE 0 THEN BEGIN
                        
67bd858a   Ilyes Choubani   Replication of th...
559
                            xx=((*!dustem_data.polext).wav)[idx_spec]
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                            yy=dustem_interp[idx_spec]
afde94a3   Ilyes Choubani   general update
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                            cgoplot,1/xx,yy,color='Indian Red',pos=position,psym=7,syms=2,noerase=1   
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                        ENDIF
                        
                        
                        IF ct_filt NE 0 THEN BEGIN
67bd858a   Ilyes Choubani   Replication of th...
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                            xx=((*!dustem_data.polext).wav)[idx_filt]
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                            yy=dustem_interp[idx_filt]
afde94a3   Ilyes Choubani   general update
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                            cgoplot,1/xx,yy,color='red',pos=position,psym=6,syms=2,noerase=1
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                        ENDIF
                        
                        ;Plotting of the total dust emission spectru
afde94a3   Ilyes Choubani   general update
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                        cgoplot,1/st.polext.wav,dustem_spec,pos=position,noerase=1,/xlog,/ys,/xs,/ylog
5f04fa07   Ilyes Choubani   general update
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                        ;cgoplot,st.polsed.wav,st.polsed.em_tot*fact,pos=position,noerase=1,/xlog,/ys,/xs,/ylog
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                    endif else begin ;The data points in the plot that remain unchanged.
                        
                        ;Spectrum points are treated before for plotting reasons. 
                        if ct_spec ne 0 then begin 
                            
                            ;Plotting of spectrum data points (to be fitted)
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                            cgplot,1/((*!dustem_data.polext).wav)(idx_spec),((*!dustem_data.polext).values)(idx_spec),/ylog,/xlog,/ys,xs=9,pos=position,noerase=1,xtit=' ',charsize=1.15,xtickformat='(A1)',color='Powder Blue',xr=xr,yr=yr,psym=8,syms=0.8,ytickformat='dstmwrp_exp'                
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                            ;Plotting of the spectrum error points
67bd858a   Ilyes Choubani   Replication of th...
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                            rms=3.*((*!dustem_data.polext).sigma)(idx_spec)/2.
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                            cgerrplot,1/((*!dustem_data.polext).wav)(idx_spec),((*!dustem_data.polext).values)(idx_spec)-rms,((*!dustem_data.polext).values)(idx_spec)+rms,color='Powder Blue'
18e4331f   Ilyes Choubani   general update (f...
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                        endif
                        
                        if ct_filt ne 0 then begin
                            plotsym,0,/fill
                            ;Plotting of filter data points (to be fitted) + testing for prior plotting                         
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                            if ct_spec ne 0 then cgoplot,1/((*!dustem_data.polext).wav)(idx_filt),((*!dustem_data.polext).values)(idx_filt),charsize=1.15,color='Dodger Blue',psym=8,syms=0.8,pos=position,/ys,xs=9,noerase=1,xtickformat='(A1)',xr=xr,yr=yr,ytickformat='dstmwrp_exp',/ylog,/xlog else $
                                cgplot,1/((*!dustem_data.polext).wav)(idx_filt),((*!dustem_data.polext).values)(idx_filt),charsize=1.15,color='Dodger Blue',psym=8,syms=0.8,pos=position,/ys,xs=9,noerase=1,xtickformat='(A1)',xtit=' ',xr=xr,yr=yr,ytickformat='dstmwrp_exp',/ylog,/xlog
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                            ;Plotting of the filter error points
67bd858a   Ilyes Choubani   Replication of th...
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                            rms=3.*((*!dustem_data.polext).sigma)(idx_filt)/2.;/dustem_polsed(idx_filt)
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                            cgerrplot,1/((*!dustem_data.polext).wav)(idx_filt),((*!dustem_data.polext).values)(idx_filt)-rms,((*!dustem_data.polext).values)(idx_filt)+rms,color='Dodger Blue'
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                        endif
                        
                        
                        ;Plotting of frequency axis
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                        cgaxis, xaxis=1, xlog=1, xs=1, xminor=10, xticklen=0.05, xrange=((!const.c*1E6*xr)*1E-9),charsize=1.15,title=textoidl('\nu (GHz)')
18e4331f   Ilyes Choubani   general update (f...
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94c4dffa   Ilyes Choubani   update + fixes fo...
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                        xyouts,pospltxt[0],pospltxt[1],textoidl('\tau_{PEXT}'),color=0,/normal,charsize=1.3;,charthick=2.0
18e4331f   Ilyes Choubani   general update (f...
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                        ;Locating all the hidden data points (spectrum+filter)
67bd858a   Ilyes Choubani   Replication of th...
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                        match2,((*!dustem_data.polext).wav),((*!dustem_show.polext).wav),show_polsedpts,fit_polsedpts ;only show_polsedpts is needed
                        idx_rmv_polsed=where(show_polsedpts eq -1, ct_hdnpts) ; indices of the points to hide  - not renaming this and keeping the polsed notation
2df3360b   Ilyes Choubani   Correcting error:...
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                        ;Locating the hidden spectrum and filter data points                                        
67bd858a   Ilyes Choubani   Replication of th...
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                        idx_filt_hdn = where((((*!dustem_show.polext).filt_names))(idx_rmv_polsed) NE 'SPECTRUM',ct_filt_hdn)
                        idx_spec_hdn = where(((*!dustem_show.polext).filt_names)(idx_rmv_polsed) EQ 'SPECTRUM',ct_spec_hdn)
2df3360b   Ilyes Choubani   Correcting error:...
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1355825c   Ilyes Choubani   General update
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                        ;stop
18e4331f   Ilyes Choubani   general update (f...
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                        if ct_hdnpts ne 0 then begin ;Hidden data points are present 
                            ;stop
18e4331f   Ilyes Choubani   general update (f...
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                            if ct_spec_hdn ne 0 then begin
                                ;Plotting of hidden spectrum data points
afde94a3   Ilyes Choubani   general update
622
                                cgoplot,1/(((*!dustem_show.polext).wav)[idx_rmv_polsed])(idx_spec_hdn),(((*!dustem_show.polext).values)[idx_rmv_polsed])(idx_spec_hdn),pos=position,/ylog,/xlog,/ys,xs=9,noerase=1,charsize=1.15,xtickformat='(A1)',color='Black',xr=xr,yr=yr,psym=8,syms=0.8
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                                ;Plotting of hidden spectrum error points
67bd858a   Ilyes Choubani   Replication of th...
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                                rms=3.*(((*!dustem_show.polext).sigma)[idx_rmv_polsed])(idx_spec_hdn)/2.
afde94a3   Ilyes Choubani   general update
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                                cgerrplot,1/(((*!dustem_show.polext).wav)[idx_rmv_polsed])(idx_spec_hdn),(((*!dustem_show.polext).values)[idx_rmv_polsed])(idx_spec_hdn)-rms,(((*!dustem_show.polext).values)[idx_rmv_polsed])(idx_spec_hdn)+rms,color='Black'
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                            endif                                            
                            
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629
                            if ct_filt_hdn ne 0 then begin
18e4331f   Ilyes Choubani   general update (f...
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                            ;Plotting of hidden filter data points 
afde94a3   Ilyes Choubani   general update
631
                                cgoplot,1/(((*!dustem_show.polext).wav)[idx_rmv_polsed])(idx_filt_hdn),(((*!dustem_show.polext).values)[idx_rmv_polsed])(idx_filt_hdn),pos=position,/ylog,/xlog,/ys,xs=9,noerase=1,charsize=1.15,xtickformat='(A1)',color='Black',xr=xr,yr=yr,psym=8,syms=0.8                                           
18e4331f   Ilyes Choubani   general update (f...
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                                ;Plotting of hidden filter error point
67bd858a   Ilyes Choubani   Replication of th...
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                                rms=3.*(((*!dustem_show.polext).sigma)[idx_rmv_polsed])(idx_filt_hdn)/2.
afde94a3   Ilyes Choubani   general update
635
                                cgerrplot,1/(((*!dustem_show.polext).wav)[idx_rmv_polsed])(idx_filt_hdn),(((*!dustem_show.polext).values)[idx_rmv_polsed])(idx_filt_hdn)-rms,(((*!dustem_show.polext).values)[idx_rmv_polsed])(idx_filt_hdn)+rms,color='Black'
18e4331f   Ilyes Choubani   general update (f...
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                            endif
                                                           
                        endif    
                        
                        
                    
                    endelse 
                
                
                
                endelse 
            
            endelse
        
67bd858a   Ilyes Choubani   Replication of th...
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b5314324   Ilyes Choubani   updating the plot...
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        end
        
67bd858a   Ilyes Choubani   Replication of th...
654
        'POLSED': begin 
1bc09467   Ilyes Choubani   fixed issue with ...
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            vectw=DINDGEN(1001)*(alog10(1E7) - alog10(1E5))/(1000 - 1L) + alog10(1E5)
            vectw=10^vectw[1:*]
            vectw=[wavs,vectw]
            vectx=vectw*0+1
67bd858a   Ilyes Choubani   Replication of th...
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            idx_filt=where((*!dustem_data.polsed).filt_names NE 'SPECTRUM',ct_filt)
            idx_spec=where((*!dustem_data.polsed).filt_names EQ 'SPECTRUM',ct_spec)
1355825c   Ilyes Choubani   General update
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            ;#1) get the plotting keywords (pertaining to each data set) @here when the _extra structure is ready
            
            if keyword_set(nodata) then begin ;when the data is not present
            
67bd858a   Ilyes Choubani   Replication of th...
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                if keyword_set(norm) then begin ;normalized plot
                    
                    xtit=textoidl('\lambda (\mum)')
                    if !run_pol then xtit = ''
1bc09467   Ilyes Choubani   fixed issue with ...
673
                    cgplot,vectw,vectx,/xlog,/ys,xs=1,pos=position,noerase=1,xtickformat='(A1)',color='Black',xr=xr,xtit=xtit,yr=[0.0,2.0],yticks=2,ymino=2,xticklen=0.1,ytickformat='(F6.2)',charsize=1.0
67bd858a   Ilyes Choubani   Replication of th...
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                    xyouts,pospltxt[0],pospltxt[1],textoidl('norm'),color=0,/normal,charsize=1.1                        
                
                endif else begin ;normal plot
                    
                    cgplot,wavs,wavs,/nodata,/ylog,/xlog,/ys,xs=9,pos=position,noerase=1,charsize=1.15,xtickformat='(A1)',color='Powder Blue',xr=xr,xtit='',yr=yr,psym=8,syms=0.8  
                    cgaxis, xaxis=1 ,xlog=1 ,xrange=((!const.c*1E6/xr)*1E-9),charsize=1.15,title=textoidl('\nu (GHz)'),xticklen=0.05,xminor=10
                    xyouts,pospltxt[0],pospltxt[1],textoidl('P_{\nu} (MJy/sr)'),color=0,/normal,charsize=1.3;,charthick=2.0
                  
                endelse  
                
            
            endif else begin ;when the data is present 
            
                if keyword_set(norm) then begin 
                    
                    if keyword_set(refresh) then begin ;The data points in the plot that are being refreshed 
1355825c   Ilyes Choubani   General update
690
                        
67bd858a   Ilyes Choubani   Replication of th...
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                        IF ct_spec NE 0 THEN BEGIN
                            xx=((*!dustem_data.polsed).wav)[idx_spec]
                            yy=dustem_interp[idx_spec]
                            rms=3.*((*!dustem_data.polsed).sigma)(idx_spec)/2.
94c4dffa   Ilyes Choubani   update + fixes fo...
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                            indzero = where(yy NE 0, ct_zero)
                            IF ct_zero NE 0 THEN BEGIN
                                cgoplot,xx[indzero],(((*!dustem_data.polsed).values)[idx_spec])[indzero]/yy[indzero],color='Powder Blue',psym=16,syms=0.8,noerase=1,pos=position
                                cgerrplot,(((*!dustem_data.polsed).wav)(idx_spec))[indzero],((((*!dustem_data.polsed).values)[idx_spec])[indzero]-rms[indzero])/yy[indzero],((((*!dustem_data.polsed).values)[idx_spec])[indzero]+rms[indzero])/yy[indzero],color='Powder Blue'
                            ENDIF
67bd858a   Ilyes Choubani   Replication of th...
700
                        ENDIF
1355825c   Ilyes Choubani   General update
701
                        
67bd858a   Ilyes Choubani   Replication of th...
702
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                        IF ct_filt NE 0 THEN BEGIN
                            xx=((*!dustem_data.polsed).wav)[idx_filt]
                            yy=dustem_interp[idx_filt]
94c4dffa   Ilyes Choubani   update + fixes fo...
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                            rms=3.*((*!dustem_data.polsed).sigma)(idx_filt)/2.
                            indzero = where(yy NE 0, ct_zero)
                            IF ct_zero NE 0 THEN BEGIN 
                                cgoplot,xx[indzero],(((*!dustem_data.polsed).values)[idx_filt])[indzero]/yy[indzero],psym=16,color='Dodger Blue',syms=0.8,noerase=1,pos=position
                                cgerrplot,(((*!dustem_data.polsed).wav)(idx_filt))[indzero],((((*!dustem_data.polsed).values)[idx_filt])[indzero]-rms[indzero])/yy[indzero],((((*!dustem_data.polsed).values)[idx_filt])[indzero]+rms[indzero])/yy[indzero],color='Dodger Blue';,/overplot 
                            ENDIF
67bd858a   Ilyes Choubani   Replication of th...
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                        ENDIF
                            
1355825c   Ilyes Choubani   General update
713
                        
67bd858a   Ilyes Choubani   Replication of th...
714
                    endif else begin ;The data points in the plot that remain unchanged ; UNNECESSARY BLOCK but needed to limit erros when calls are made with missing keywords.
1bc09467   Ilyes Choubani   fixed issue with ...
715
                        
67bd858a   Ilyes Choubani   Replication of th...
716
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                        xtit=textoidl('\lambda (\mum)')
                        if !run_pol then xtit = ''
afde94a3   Ilyes Choubani   general update
718
                        cgplot,vectw,vectx,/xlog,/ys,xs=1,pos=position,noerase=1,xtickformat='(A1)',color='Black',xr=xr,xtit=xtit,yr=[0.0,2.0],yticks=2,ymino=2,xticklen=0.1,ytickformat='(F6.2)',charsize=1.0
67bd858a   Ilyes Choubani   Replication of th...
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                        xyouts,pospltxt[0],pospltxt[1],textoidl('norm'),color=0,/normal,charsize=1.1
                    
                    endelse
                    
                
                endif else begin ; normal plot
1355825c   Ilyes Choubani   General update
725
                        
67bd858a   Ilyes Choubani   Replication of th...
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                    if keyword_set(refresh) then begin ;The data points in the plot are being refreshed
                        
                        ;Plotting of the spectra of the dust species
                        FOR i=0L,Ngrains-1 DO BEGIN
                            cgoplot,st.polsed.wav,st.polsed.(i+1)*fact,color=use_cols[i],pos=position,noerase=1
                        ENDFOR
                        
                        ;stop
                                                
                        ;Plotting of the plugins.
                        for i=0L,n_plgns-1 do begin
                            If isa((*!dustem_plugin).(0).spec) then begin
                                IF total(strsplit((*(*!dustem_plugin).(i).scope),'+',/extract) EQ 'ADD_POLSED') THEN begin
                                    cgoplot,st.polsed.wav,sqrt(((*(*!dustem_plugin).(i).spec)[*,1])^2+((*(*!dustem_plugin).(i).spec)[*,2])^2),color=clrs_plgns[i],pos=position,noerase=1,linestyle=2               
                                ENDIF 
                            endif
                        endfor
                                                
                        ;PLotting of the interpolates corresponding to spectrum and filter points
                           
                        IF ct_spec NE 0 THEN BEGIN
                        
                            xx=((*!dustem_data.polsed).wav)[idx_spec]
                            yy=dustem_interp[idx_spec]
                            cgoplot,xx,yy,color='Indian Red',pos=position,psym=7,syms=2,noerase=1   
                        ENDIF
                        
                        
                        IF ct_filt NE 0 THEN BEGIN
                            xx=((*!dustem_data.polsed).wav)[idx_filt]
                            yy=dustem_interp[idx_filt]
                            cgoplot,xx,yy,color='red',pos=position,psym=6,syms=2,noerase=1
                        ENDIF
                        
                        ;Plotting of the total dust emission spectru
                        cgoplot,st.polsed.wav,dustem_spec,pos=position,noerase=1,/xlog,/ys,/xs,/ylog
                        ;cgoplot,st.polsed.wav,st.polsed.em_tot*fact,pos=position,noerase=1,/xlog,/ys,/xs,/ylog
                                        
                                
                    endif else begin ;The data points in the plot that remain unchanged.
                        
                        ;Spectrum points are treated before for plotting reasons. 
                        if ct_spec ne 0 then begin 
                            
                            ;Plotting of spectrum data points (to be fitted)
                            cgplot,((*!dustem_data.polsed).wav)(idx_spec),((*!dustem_data.polsed).values)(idx_spec),/ylog,/xlog,/ys,xs=9,pos=position,noerase=1,xtit=' ',charsize=1.15,xtickformat='(A1)',color='Powder Blue',xr=xr,yr=yr,psym=8,syms=0.8,ytickformat='dstmwrp_exp'                
                            
                            ;Plotting of the spectrum error points
                            rms=3.*((*!dustem_data.polsed).sigma)(idx_spec)/2.
                            cgerrplot,((*!dustem_data.polsed).wav)(idx_spec),((*!dustem_data.polsed).values)(idx_spec)-rms,((*!dustem_data.polsed).values)(idx_spec)+rms,color='Powder Blue'

                        endif
                        
                        if ct_filt ne 0 then begin
                            plotsym,0,/fill
                            ;Plotting of filter data points (to be fitted) + testing for prior plotting                         
                            if ct_spec ne 0 then cgoplot,((*!dustem_data.polsed).wav)(idx_filt),((*!dustem_data.polsed).values)(idx_filt),charsize=1.15,color='Dodger Blue',psym=8,syms=0.8,pos=position,/ys,xs=9,noerase=1,xtickformat='(A1)',xr=xr,yr=yr,ytickformat='dstmwrp_exp',/ylog,/xlog else $
                                cgplot,((*!dustem_data.polsed).wav)(idx_filt),((*!dustem_data.polsed).values)(idx_filt),charsize=1.15,color='Dodger Blue',psym=8,syms=0.8,pos=position,/ys,xs=9,noerase=1,xtickformat='(A1)',xtit=' ',xr=xr,yr=yr,ytickformat='dstmwrp_exp',/ylog,/xlog
                            
                            
                            ;Plotting of the filter error points
                            rms=3.*((*!dustem_data.polsed).sigma)(idx_filt)/2.;/dustem_polsed(idx_filt)
                            cgerrplot,((*!dustem_data.polsed).wav)(idx_filt),((*!dustem_data.polsed).values)(idx_filt)-rms,((*!dustem_data.polsed).values)(idx_filt)+rms,color='Dodger Blue'
                            
                        endif
                        
                        
                        ;Plotting of frequency axis
                        cgaxis, xaxis=1, xlog=1, xs=1, xminor=10, xticklen=0.05, xrange=((!const.c*1E6/(_extra.(ind_xr)))*1E-9),charsize=1.15,title=textoidl('\nu (GHz)')
                        
                        xyouts,pospltxt[0],pospltxt[1],textoidl('P_{\nu} (MJy/sr)'),color=0,/normal,charsize=1.3;,charthick=2.0
                         
                        ;Locating all the hidden data points (spectrum+filter)
                        match2,((*!dustem_data.polsed).wav),((*!dustem_show.polsed).wav),show_polsedpts,fit_polsedpts ;only show_polsedpts is needed
                        idx_rmv_polsed=where(show_polsedpts eq -1, ct_hdnpts) ; indices of the points to hide
                        ;Locating the hidden spectrum and filter data points                                        
                        idx_filt_hdn = where((((*!dustem_show.polsed).filt_names))(idx_rmv_polsed) NE 'SPECTRUM',ct_filt_hdn)
                        idx_spec_hdn = where(((*!dustem_show.polsed).filt_names)(idx_rmv_polsed) EQ 'SPECTRUM',ct_spec_hdn)
                        
                        ;stop
                        if ct_hdnpts ne 0 then begin ;Hidden data points are present 
                            ;stop
                            
                            if ct_spec_hdn ne 0 then begin
                                ;Plotting of hidden spectrum data points
                                cgoplot,(((*!dustem_show.polsed).wav)[idx_rmv_polsed])(idx_spec_hdn),(((*!dustem_show.polsed).values)[idx_rmv_polsed])(idx_spec_hdn),pos=position,/ylog,/xlog,/ys,xs=9,noerase=1,charsize=1.15,xtickformat='(A1)',color='Black',xr=xr,yr=yr,psym=8,syms=0.8
                                
                                ;Plotting of hidden spectrum error points
                                rms=3.*(((*!dustem_show.polsed).sigma)[idx_rmv_polsed])(idx_spec_hdn)/2.
                                cgerrplot,(((*!dustem_show.polsed).wav)[idx_rmv_polsed])(idx_spec_hdn),(((*!dustem_show.polsed).values)[idx_rmv_polsed])(idx_spec_hdn)-rms,(((*!dustem_show.polsed).values)[idx_rmv_polsed])(idx_spec_hdn)+rms,color='Black'
                            endif                                            
                            
                            if ct_filt_hdn ne 0 then begin
                            ;Plotting of hidden filter data points 
                                cgoplot,(((*!dustem_show.polsed).wav)[idx_rmv_polsed])(idx_filt_hdn),(((*!dustem_show.polsed).values)[idx_rmv_polsed])(idx_filt_hdn),pos=position,/ylog,/xlog,/ys,xs=9,noerase=1,charsize=1.15,xtickformat='(A1)',color='Black',xr=xr,yr=yr,psym=8,syms=0.8                                           
                                
                                ;Plotting of hidden filter error point
                                rms=3.*(((*!dustem_show.polsed).sigma)[idx_rmv_polsed])(idx_filt_hdn)/2.
                                cgerrplot,(((*!dustem_show.polsed).wav)[idx_rmv_polsed])(idx_filt_hdn),(((*!dustem_show.polsed).values)[idx_rmv_polsed])(idx_filt_hdn)-rms,(((*!dustem_show.polsed).values)[idx_rmv_polsed])(idx_filt_hdn)+rms,color='Black'
                                
                            endif
                                                           
                        endif    
                        
                        
                    
                    endelse 
                
                
                
                endelse 
            
            endelse
        
        end
        
        'POLFRAC': begin 
        
            idx_filt=where((*!dustem_data.polfrac).filt_names NE 'SPECTRUM',ct_filt)
            idx_spec=where((*!dustem_data.polfrac).filt_names EQ 'SPECTRUM',ct_spec)
            
            
            if keyword_set(nodata) then begin ;when the data is not present
            
                    xtit = ''
                    cgplot,wavs,wavs*0.,/nodata,/xlog,/ys,xs=1,pos=position,noerase=1,charsize=1.15,xtickformat='(A1)',color='Powder Blue',xr=xr,xtit='',yr=[1.00E-04,50.00],/ylog,psym=8,syms=0.8  
07372e26   Ilyes Choubani   Corrected huge pl...
852
                    xyouts,pospltxt[0],pospltxt[1],textoidl('p (%)'),color=0,/normal,charsize=1.3;,charthick=2.0
67bd858a   Ilyes Choubani   Replication of th...
853
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857
858
859
860
861
862
863
864
865
866
867
868
                 
            endif else begin ;when the data is present ; normal plot     
                        
                    if keyword_set(refresh) then begin ;The data points in the plot are being refreshed
                        
                        ;##################TAKEN FROM SED
                        
                        ;Plotting of the spectra of the dust species
                        
                        ;I THINK I WILL HAVE AN ERROR HERE BECAUSE I WILL HAVE TO DIVIDE TWO ARRAYS FOR EACH DUST SPECIES. 
                        ; (st.polsed.(i+1)/st.sed.(i+1))*fact
                        ;There is an issue with the fact that there are grain species that are not polarized
                        ;test and set a counter? YES FOR NOW 
                        ;
                        
                        FOR i=0L,Ngrains-1 DO BEGIN
1355825c   Ilyes Choubani   General update
869
                            
5f04fa07   Ilyes Choubani   general update
870
                            testneq = where(st.polsed.(i+1) ne 0,countneq)
1355825c   Ilyes Choubani   General update
871
                            
5f04fa07   Ilyes Choubani   general update
872
873
874
                            if countneq ne 0 then begin 
                                vecfin = st.polsed.(i+1)*0.0
                                
07372e26   Ilyes Choubani   Corrected huge pl...
875
876
                                vecfin[testneq] = ((st.polsed.(i+1))[testneq])*fact[testneq]/extra_spec[testneq];(st.sed.em_tot)[testneq];;(st.sed.em_tot)[testneq];spec[testneq];(st.sed.(i+1))[testneq];*fact;(st.sed.(i+1))[testneq]
                                
5f04fa07   Ilyes Choubani   general update
877
878
                                cgoplot,st.polsed.wav,vecfin*100,pos=position,noerase=1,color=use_cols[i],xr=xr,/xlog,/ylog,ytickformat='(A1)',yr=[1.00E-04,50.00]
                            endif   
1355825c   Ilyes Choubani   General update
879
880
881
                        ENDFOR
                       
                        ;Plotting of the plugins. 
5f04fa07   Ilyes Choubani   general update
882
                         
1355825c   Ilyes Choubani   General update
883
                        for i=0L,n_plgns-1 do begin
5f04fa07   Ilyes Choubani   general update
884
                            
3c479f24   Ilyes Choubani   Allowing to fix p...
885
886
887
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890
891
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893
                            if isa((*!dustem_plugin).(0).spec) then begin
                            
                                IF total(strsplit((*(*!dustem_plugin).(i).scope),'+',/extract) EQ 'ADD_POLSED') THEN begin
                                    vecfin = st.polsed.em_tot*0.0
                                    vecfin[testneq] = sqrt((((*(*!dustem_plugin).(i).spec)[*,1])^2)[testneq]+(((*(*!dustem_plugin).(i).spec)[*,2])^2)[testneq])/((*(*!dustem_plugin).(i).spec)[*,0])[testneq]        
                                    cgoplot,st.polsed.wav,vecfin*100,color=clrs_plgns[i],pos=position,noerase=1,linestyle=2               
                                
                                ENDIF
                            endif
1355825c   Ilyes Choubani   General update
894
                            
1355825c   Ilyes Choubani   General update
895
896
                        endfor
                       
5f04fa07   Ilyes Choubani   general update
897
898
                       ;STOPPED HERE. CHECK QSED NOW. MOVING ON NOW. 
                       
1355825c   Ilyes Choubani   General update
899
900
901
902
903
904
                        
                         ;PLotting of the interpolates corresponding to spectrum and filter points
                        
                         IF ct_spec NE 0 THEN BEGIN
                         
                             xx=((*!dustem_data.polfrac).wav)[idx_spec]
5f04fa07   Ilyes Choubani   general update
905
                             yy=dustem_interp[idx_spec]
fcb6eade   Ilyes Choubani   general update - ...
906
                             cgoplot,xx,yy*100,color='Indian Red',pos=position,psym=7,syms=2,noerase=1   
1355825c   Ilyes Choubani   General update
907
908
909
910
911
                         ENDIF
                         
                         
                         IF ct_filt NE 0 THEN BEGIN
                             xx=((*!dustem_data.polfrac).wav)[idx_filt]
5f04fa07   Ilyes Choubani   general update
912
                             yy=dustem_interp[idx_filt]
1355825c   Ilyes Choubani   General update
913
914
915
916
917
                             cgoplot,xx,yy*100,color='red',pos=position,psym=6,syms=2,noerase=1
                         ENDIF
                         
                         
                         ;Plotting of the total dust emission spectrum
afde94a3   Ilyes Choubani   general update
918
                         cgoplot,st.polsed.wav,dustem_spec*100,pos=position,noerase=1,/xlog,/ys,/xs               
1355825c   Ilyes Choubani   General update
919
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926
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                    endif else begin ;The data points in the plot that remain unchanged.
                        
                        
                        ;Plotting of frequency axis
                        ;cgaxis, xaxis=1, xlog=1, xs=1, xminor=10, xticklen=0.05, xrange=((!const.c*1E6/(_extra.(ind_xr)))*1E-9),charsize=1.15,title=textoidl('\nu (GHz)')
                        
                        
                        ;Spectrum points are treated before for plotting reasons. 
9cb38725   Ilyes Choubani   Fixed tests relat...
928
                        
1355825c   Ilyes Choubani   General update
929
930
931
                        if ct_spec ne 0 then begin 
                            
                            ;Plotting of spectrum data points (to be fitted)
5f04fa07   Ilyes Choubani   general update
932
                            cgplot,((*!dustem_data.polfrac).wav)(idx_spec),((*!dustem_data.polfrac).values)(idx_spec)*100,/xlog,/ylog,/ys,xs=1,pos=position,noerase=1,xtit=' ',charsize=1.15,xtickformat='(A1)',color='Powder Blue',xr=xr,yr=[1.00E-04,50.00],psym=16,syms=0.8;,ytickformat='dstmwrp_exp'                
1355825c   Ilyes Choubani   General update
933
934
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937
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939
940
941
942
                            
                            ;Plotting of the spectrum error points
                            rms=3.*((*!dustem_data.polfrac).sigma)(idx_spec)/2.
                            cgerrplot,((*!dustem_data.polfrac).wav)(idx_spec),(((*!dustem_data.polfrac).values)(idx_spec)-rms)*100,(((*!dustem_data.polfrac).values)(idx_spec)+rms)*100,color='Powder Blue'

                        endif
                        
                        if ct_filt ne 0 then begin
                        
                            ;Plotting of filter data points (to be fitted) + testing for prior plotting                         
5f04fa07   Ilyes Choubani   general update
943
944
                            if ct_spec ne 0 then cgoplot,((*!dustem_data.polfrac).wav)(idx_filt),((*!dustem_data.polfrac).values)(idx_filt)*100,charsize=1.15,color='Dodger Blue',psym=16,syms=0.8,pos=position,/ys,xs=1,noerase=1,xtickformat='(A1)',xr=xr,yr=[1.00E-04,50.00],/xlog,/ylog else $;,ytickformat='dstmwrp_exp'
                                cgplot,((*!dustem_data.polfrac).wav)(idx_filt),((*!dustem_data.polfrac).values)(idx_filt)*100,charsize=1.15,color='Dodger Blue',psym=16,syms=0.8,pos=position,/ys,xs=1,noerase=1,xtickformat='(A1)',xtit=' ',xr=xr,yr=[1.00E-04,50.00],/xlog,/ylog;,ytickformat='dstmwrp_exp'
1355825c   Ilyes Choubani   General update
945
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954
                            
                            
                            ;Plotting of the filter error points
                            rms=3.*((*!dustem_data.polfrac).sigma)(idx_filt)/2.;/dustem_polfrac(idx_filt)
                            cgerrplot,((*!dustem_data.polfrac).wav)(idx_filt),(((*!dustem_data.polfrac).values)(idx_filt)-rms)*100,(((*!dustem_data.polfrac).values)(idx_filt)+rms)*100,color='Dodger Blue'
                            
                        endif
                        
                        
                        
07372e26   Ilyes Choubani   Corrected huge pl...
955
                        xyouts,pospltxt[0],pospltxt[1],textoidl('p (%)'),color=0,/normal,charsize=1.3;,charthick=2.0
1355825c   Ilyes Choubani   General update
956
957
958
959
                         
                        ;Locating all the hidden data points (spectrum+filter)
                        
                        ;The filtering has been done prior (in the primary routine)
abebbdf3   Ilyes Choubani   General update: A...
960
                        match2,((*!dustem_data.polfrac).wav),((*!dustem_show.polfrac).wav),show_polfracpts,fit_polfracpts ;only show_polfracpts is needed
1355825c   Ilyes Choubani   General update
961
962
                        idx_rmv_polfrac=where(show_polfracpts eq -1, ct_hdnpts) ; indices of the points to hide
                        ;stop
2df3360b   Ilyes Choubani   Correcting error:...
963
964
965
                        ;Locating the hidden spectrum and filter data points                                        
                        idx_filt_hdn = where(((*!dustem_show.polfrac).filt_names)(idx_rmv_polfrac) NE 'SPECTRUM',ct_filt_hdn)
                        idx_spec_hdn = where(((*!dustem_show.polfrac).filt_names)(idx_rmv_polfrac) EQ 'SPECTRUM',ct_spec_hdn)
1355825c   Ilyes Choubani   General update
966
967
                        if ct_hdnpts ne 0 then begin ;Hidden data points are present 
                            ;stop
1355825c   Ilyes Choubani   General update
968
969
970
                            
                            if ct_spec_hdn ne 0 then begin
                                ;Plotting of hidden spectrum data points
5f04fa07   Ilyes Choubani   general update
971
                                cgplot,(((*!dustem_show.polfrac).wav)[idx_rmv_polfrac])(idx_spec_hdn),(((*!dustem_show.polfrac).values)[idx_rmv_polfrac])(idx_spec_hdn)*100,pos=position,/xlog,/ylog,/ys,xs=1,noerase=1,charsize=1.15,xtickformat='(A1)',color='Black',xr=xr,yr=[1.00E-04,50.00],psym=8,syms=0.8
1355825c   Ilyes Choubani   General update
972
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975
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979
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981
                                
                                ;Plotting of hidden spectrum error points
                                rms=3.*(((*!dustem_show.polfrac).sigma)[idx_rmv_polfrac])(idx_spec_hdn)/2.
                                cgerrplot,(((*!dustem_show.polfrac).wav)[idx_rmv_polfrac])(idx_spec_hdn),((((*!dustem_show.polfrac).values)[idx_rmv_polfrac])(idx_spec_hdn)-rms)*100,((((*!dustem_show.polfrac).values)[idx_rmv_polfrac])(idx_spec_hdn)+rms)*100,color='Black'
                            endif                                           
                            
                            if ct_filt_hdn ne 0 then begin
                                ;stop
                                plotsym,0, /fill
                                ;Plotting of hidden filter data points 
5f04fa07   Ilyes Choubani   general update
982
                                cgplot,(((*!dustem_show.polfrac).wav)[idx_rmv_polfrac])(idx_filt_hdn),(((*!dustem_show.polfrac).values)[idx_rmv_polfrac])(idx_filt_hdn)*100,pos=position,/xlog,/ylog,/ys,xs=1,noerase=1,charsize=1.15,xtickformat='(A1)',color='Black',xr=xr,yr=[1.00E-04,50.00],psym=8,syms=0.8                                           
1355825c   Ilyes Choubani   General update
983
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                                ;stop
                                ;Plotting of hidden filter error point
                                rms=3.*(((*!dustem_show.polfrac).sigma)[idx_rmv_polfrac])(idx_filt_hdn)/2.
                                cgerrplot,(((*!dustem_show.polfrac).wav)[idx_rmv_polfrac])(idx_filt_hdn),((((*!dustem_show.polfrac).values)[idx_rmv_polfrac])(idx_filt_hdn)-rms)*100,((((*!dustem_show.polfrac).values)[idx_rmv_polfrac])(idx_filt_hdn)+rms)*100,color='Black'
                                 
                            endif 
                                                           
                        endif 
                        
                    
                    endelse 
                
            endelse 
b5314324   Ilyes Choubani   updating the plot...
996
997
998
        
        end
        
fdc0dcfe   Ilyes Choubani   adding forgotten ...
999
        'FPOLEXT': BEGIN ; For completeness (not sure of the physical usefulness of this qauntity )
67bd858a   Ilyes Choubani   Replication of th...
1000
        
67bd858a   Ilyes Choubani   Replication of th...
1001
1002
            idx_filt=where((*!dustem_data.fpolext).filt_names NE 'SPECTRUM',ct_filt)
            idx_spec=where((*!dustem_data.fpolext).filt_names EQ 'SPECTRUM',ct_spec)
18e4331f   Ilyes Choubani   general update (f...
1003
            
18e4331f   Ilyes Choubani   general update (f...
1004
1005
1006
1007
            
            if keyword_set(nodata) then begin ;when the data is not present
            
                    xtit = ''
94c4dffa   Ilyes Choubani   update + fixes fo...
1008
1009
                    cgplot,wavs,wavs*0.,/nodata,/xlog,/ys,xs=1,pos=position,noerase=1,charsize=1.15,xtickformat='(A1)',color='Powder Blue',xr=xr,xtit='',yr=[1.00E-04,10.00],/ylog,psym=8,syms=0.8  
                    xyouts,pospltxt[0],pospltxt[1],textoidl('\tau_{PEXT}/\tau_{EXT} (%)'),color=0,/normal,charsize=1.3;,charthick=2.0
18e4331f   Ilyes Choubani   general update (f...
1010
1011
1012
1013
1014
1015
1016
1017
                 
            endif else begin ;when the data is present ; normal plot     
                        
                    if keyword_set(refresh) then begin ;The data points in the plot are being refreshed
                        
                        ;##################TAKEN FROM SED
                        
                        ;Plotting of the spectra of the dust species
67bd858a   Ilyes Choubani   Replication of th...
1018
1019
1020
1021
1022
1023
1024
                        
                        ;I THINK I WILL HAVE AN ERROR HERE BECAUSE I WILL HAVE TO DIVIDE TWO ARRAYS FOR EACH DUST SPECIES. 
                        ; (st.polsed.(i+1)/st.sed.(i+1))*fact
                        ;There is an issue with the fact that there are grain species that are not polarized
                        ;test and set a counter? YES FOR NOW 
                        ;
                        
18e4331f   Ilyes Choubani   general update (f...
1025
                        FOR i=0L,Ngrains-1 DO BEGIN
5f04fa07   Ilyes Choubani   general update
1026
                            
07372e26   Ilyes Choubani   Corrected huge pl...
1027
1028
1029
                            vecto = transpose((st.polext.(1))[i,*]+(st.polext.(2))[i,*])
                            
                            testneq = where(vecto ne 0,countneq)
67bd858a   Ilyes Choubani   Replication of th...
1030
1031
                            
                            if countneq ne 0 then begin 
07372e26   Ilyes Choubani   Corrected huge pl...
1032
                                vecfin = vecto*0.0
5f04fa07   Ilyes Choubani   general update
1033
                                
07372e26   Ilyes Choubani   Corrected huge pl...
1034
                                vecfin[testneq] = (vecto[testneq])*(*!dustem_HCD)/1.0e21/extra_spec[testneq];(st.sed.em_tot)[testneq];spec[testneq];(st.sed.(i+1))[testneq];*fact;(st.sed.(i+1))[testneq]
67bd858a   Ilyes Choubani   Replication of th...
1035
                                 
94c4dffa   Ilyes Choubani   update + fixes fo...
1036
                                cgoplot,1/st.polext.wav,vecfin*100,pos=position,noerase=1,color=use_cols[i],xr=xr,/xlog,/ylog,ytickformat='(A1)',yr=[1.00E-04,10.00]
67bd858a   Ilyes Choubani   Replication of th...
1037
                            endif   
18e4331f   Ilyes Choubani   general update (f...
1038
                        ENDFOR
67bd858a   Ilyes Choubani   Replication of th...
1039
1040
1041
                       
                        ;Plotting of the plugins. 
                         
18e4331f   Ilyes Choubani   general update (f...
1042
                        for i=0L,n_plgns-1 do begin
3c479f24   Ilyes Choubani   Allowing to fix p...
1043
1044
                            
                            if isa((*!dustem_plugin).(0).spec) then begin
67bd858a   Ilyes Choubani   Replication of th...
1045
1046
1047
1048
                            
                                IF total(strsplit((*(*!dustem_plugin).(i).scope),'+',/extract) EQ 'ADD_POLEXT') THEN begin
                                    vecfin = st.polext.ext_tot*0.0
                                    vecfin[testneq] = sqrt((((*(*!dustem_plugin).(i).spec)[*,1])^2)[testneq]+(((*(*!dustem_plugin).(i).spec)[*,2])^2)[testneq])/((*(*!dustem_plugin).(i).spec)[*,0])[testneq]        
afde94a3   Ilyes Choubani   general update
1049
                                    cgoplot,1/st.polext.wav,vecfin*100,color=clrs_plgns[i],pos=position,noerase=1,linestyle=2               
67bd858a   Ilyes Choubani   Replication of th...
1050
                                
3c479f24   Ilyes Choubani   Allowing to fix p...
1051
                                ENDIF
67bd858a   Ilyes Choubani   Replication of th...
1052
1053
                            endif
                            
18e4331f   Ilyes Choubani   general update (f...
1054
                        endfor
67bd858a   Ilyes Choubani   Replication of th...
1055
1056
1057
                       
                       ;STOPPED HERE. CHECK QSED NOW. MOVING ON NOW. 
                       
18e4331f   Ilyes Choubani   general update (f...
1058
1059
1060
1061
1062
                        
                         ;PLotting of the interpolates corresponding to spectrum and filter points
                        
                         IF ct_spec NE 0 THEN BEGIN
                         
67bd858a   Ilyes Choubani   Replication of th...
1063
                             xx=((*!dustem_data.fpolext).wav)[idx_spec]
5f04fa07   Ilyes Choubani   general update
1064
                             yy=dustem_interp[idx_spec]
afde94a3   Ilyes Choubani   general update
1065
                             cgoplot,1/xx,yy*100,color='Indian Red',pos=position,psym=7,syms=2,noerase=1   
18e4331f   Ilyes Choubani   general update (f...
1066
1067
1068
1069
                         ENDIF
                         
                         
                         IF ct_filt NE 0 THEN BEGIN
67bd858a   Ilyes Choubani   Replication of th...
1070
                             xx=((*!dustem_data.fpolext).wav)[idx_filt]
5f04fa07   Ilyes Choubani   general update
1071
                             yy=dustem_interp[idx_filt]
afde94a3   Ilyes Choubani   general update
1072
                             cgoplot,1/xx,yy*100,color='red',pos=position,psym=6,syms=2,noerase=1
18e4331f   Ilyes Choubani   general update (f...
1073
1074
1075
1076
                         ENDIF
                         
                         
                         ;Plotting of the total dust emission spectrum
afde94a3   Ilyes Choubani   general update
1077
                         cgoplot,1/st.polext.wav,dustem_spec*100,pos=position,noerase=1,/xlog,/ys,/xs
67bd858a   Ilyes Choubani   Replication of th...
1078
                                        
18e4331f   Ilyes Choubani   general update (f...
1079
1080
1081
1082
1083
1084
1085
1086
1087
                                
                    endif else begin ;The data points in the plot that remain unchanged.
                        
                        
                        ;Plotting of frequency axis
                        ;cgaxis, xaxis=1, xlog=1, xs=1, xminor=10, xticklen=0.05, xrange=((!const.c*1E6/(_extra.(ind_xr)))*1E-9),charsize=1.15,title=textoidl('\nu (GHz)')
                        
                        
                        ;Spectrum points are treated before for plotting reasons. 
67bd858a   Ilyes Choubani   Replication of th...
1088
                        
18e4331f   Ilyes Choubani   general update (f...
1089
1090
1091
                        if ct_spec ne 0 then begin 
                            
                            ;Plotting of spectrum data points (to be fitted)
94c4dffa   Ilyes Choubani   update + fixes fo...
1092
                            cgplot,1/((*!dustem_data.fpolext).wav)(idx_spec),((*!dustem_data.fpolext).values)(idx_spec)*100,/xlog,/ylog,/ys,xs=1,pos=position,noerase=1,xtit=' ',charsize=1.15,xtickformat='(A1)',color='Powder Blue',xr=xr,yr=[1.00E-04,10.00],psym=16,syms=0.8;,ytickformat='dstmwrp_exp'                
18e4331f   Ilyes Choubani   general update (f...
1093
1094
                            
                            ;Plotting of the spectrum error points
67bd858a   Ilyes Choubani   Replication of th...
1095
                            rms=3.*((*!dustem_data.fpolext).sigma)(idx_spec)/2.
afde94a3   Ilyes Choubani   general update
1096
                            cgerrplot,1/((*!dustem_data.fpolext).wav)(idx_spec),(((*!dustem_data.fpolext).values)(idx_spec)-rms)*100,(((*!dustem_data.fpolext).values)(idx_spec)+rms)*100,color='Powder Blue'
18e4331f   Ilyes Choubani   general update (f...
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                        endif
                        
                        if ct_filt ne 0 then begin
                        
                            ;Plotting of filter data points (to be fitted) + testing for prior plotting                         
94c4dffa   Ilyes Choubani   update + fixes fo...
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                            if ct_spec ne 0 then cgoplot,1/((*!dustem_data.fpolext).wav)(idx_filt),((*!dustem_data.fpolext).values)(idx_filt)*100,charsize=1.15,color='Dodger Blue',psym=16,syms=0.8,pos=position,/ys,xs=1,noerase=1,xtickformat='(A1)',xr=xr,yr=[1.00E-04,10.00],/xlog,/ylog else $;,ytickformat='dstmwrp_exp'
                                cgplot,1/((*!dustem_data.fpolext).wav)(idx_filt),((*!dustem_data.fpolext).values)(idx_filt)*100,charsize=1.15,color='Dodger Blue',psym=16,syms=0.8,pos=position,/ys,xs=1,noerase=1,xtickformat='(A1)',xtit=' ',xr=xr,yr=[1.00E-04,10.00],/xlog,/ylog;,ytickformat='dstmwrp_exp'
18e4331f   Ilyes Choubani   general update (f...
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                            ;Plotting of the filter error points
67bd858a   Ilyes Choubani   Replication of th...
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                            rms=3.*((*!dustem_data.fpolext).sigma)(idx_filt)/2.;/dustem_polfrac(idx_filt)
afde94a3   Ilyes Choubani   general update
1109
                            cgerrplot,1/((*!dustem_data.fpolext).wav)(idx_filt),(((*!dustem_data.fpolext).values)(idx_filt)-rms)*100,(((*!dustem_data.fpolext).values)(idx_filt)+rms)*100,color='Dodger Blue'
67bd858a   Ilyes Choubani   Replication of th...
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                        endif
                        
                        
                        
94c4dffa   Ilyes Choubani   update + fixes fo...
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                        xyouts,pospltxt[0],pospltxt[1],textoidl('\tau_{PEXT}/\tau_{EXT} (%)'),color=0,/normal,charsize=1.3;,charthick=2.0
67bd858a   Ilyes Choubani   Replication of th...
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                        ;Locating all the hidden data points (spectrum+filter)
                        
                        ;The filtering has been done prior (in the primary routine)
                        match2,((*!dustem_data.fpolext).wav),((*!dustem_show.fpolext).wav),show_polfracpts,fit_polfracpts ;only show_polfracpts is needed
                        idx_rmv_polfrac=where(show_polfracpts eq -1, ct_hdnpts) ; indices of the points to hide; 
                        ;stop
                        ;Locating the hidden spectrum and filter data points                                        
                        idx_filt_hdn = where(((*!dustem_show.fpolext).filt_names)(idx_rmv_polfrac) NE 'SPECTRUM',ct_filt_hdn)
                        idx_spec_hdn = where(((*!dustem_show.fpolext).filt_names)(idx_rmv_polfrac) EQ 'SPECTRUM',ct_spec_hdn)
                        if ct_hdnpts ne 0 then begin ;Hidden data points are present 
                            ;stop
                            
                            if ct_spec_hdn ne 0 then begin
                                ;Plotting of hidden spectrum data points
94c4dffa   Ilyes Choubani   update + fixes fo...
1131
                                cgplot,1/(((*!dustem_show.fpolext).wav)[idx_rmv_polfrac])(idx_spec_hdn),(((*!dustem_show.fpolext).values)[idx_rmv_polfrac])(idx_spec_hdn)*100,pos=position,/xlog,/ylog,/ys,xs=1,noerase=1,charsize=1.15,xtickformat='(A1)',color='Black',xr=xr,yr=[1.00E-04,10.00],psym=8,syms=0.8
67bd858a   Ilyes Choubani   Replication of th...
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                                ;Plotting of hidden spectrum error points
                                rms=3.*(((*!dustem_show.fpolext).sigma)[idx_rmv_polfrac])(idx_spec_hdn)/2.
1bc09467   Ilyes Choubani   fixed issue with ...
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                                cgerrplot,1/(((*!dustem_show.fpolext).wav)[idx_rmv_polfrac])(idx_spec_hdn),((((*!dustem_show.fpolext).values)[idx_rmv_polfrac])(idx_spec_hdn)-rms)*100,((((*!dustem_show.fpolext).values)[idx_rmv_polfrac])(idx_spec_hdn)+rms)*100,color='Black'
67bd858a   Ilyes Choubani   Replication of th...
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                            endif                                           
                            
                            if ct_filt_hdn ne 0 then begin
                                ;stop
                                plotsym,0, /fill
                                ;Plotting of hidden filter data points 
94c4dffa   Ilyes Choubani   update + fixes fo...
1142
                                cgplot,1/(((*!dustem_show.fpolext).wav)[idx_rmv_polfrac])(idx_filt_hdn),(((*!dustem_show.fpolext).values)[idx_rmv_polfrac])(idx_filt_hdn)*100,pos=position,/xlog,/ylog,/ys,xs=1,noerase=1,charsize=1.15,xtickformat='(A1)',color='Black',xr=xr,yr=[1.00E-04,10.00],psym=8,syms=0.8                                           
67bd858a   Ilyes Choubani   Replication of th...
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                                ;stop
                                ;Plotting of hidden filter error point
                                rms=3.*(((*!dustem_show.fpolext).sigma)[idx_rmv_polfrac])(idx_filt_hdn)/2.
1bc09467   Ilyes Choubani   fixed issue with ...
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                                cgerrplot,1/(((*!dustem_show.fpolext).wav)[idx_rmv_polfrac])(idx_filt_hdn),((((*!dustem_show.fpolext).values)[idx_rmv_polfrac])(idx_filt_hdn)-rms)*100,((((*!dustem_show.fpolext).values)[idx_rmv_polfrac])(idx_filt_hdn)+rms)*100,color='Black'
67bd858a   Ilyes Choubani   Replication of th...
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                            endif 
                                                           
                        endif 
                        
                    
                    endelse 
                
            endelse
        
        
        END
        
        
     
        'PSI_EM': begin ;will be copying code from qsed and hopefully it will work. NB: THIS IS FALSE . YOU DO NOT NEED A LOGARITHMIC AXIS
            
67bd858a   Ilyes Choubani   Replication of th...
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            idx_filt=where((*!dustem_data.psi_em).filt_names NE 'SPECTRUM',ct_filt)
            idx_spec=where((*!dustem_data.psi_em).filt_names EQ 'SPECTRUM',ct_spec)
            
            ;#1) get the plotting keywords (pertaining to each data set) @here when the _extra structure is ready
            
            if keyword_set(nodata) then begin ;when the data is not present
            
                    xtit = ''
                    cgplot,wavs,wavs*0.,/nodata,/xlog,/ys,xs=1,pos=position,noerase=1,charsize=1.15,xtickformat='(A1)',color='Powder Blue',xr=xr,xtit='',yr=[-90.00,90.00],psym=8,syms=0.8  
07372e26   Ilyes Choubani   Corrected huge pl...
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                    xyouts,pospltxt[0],pospltxt[1],textoidl('\Psi (deg)'),color=0,/normal,charsize=1.3;,charthick=2.0
67bd858a   Ilyes Choubani   Replication of th...
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            endif else begin ;when the data is present ; normal plot     
                        
                    if keyword_set(refresh) then begin ;The data points in the plot are being refreshed
                        
                        ;##################TAKEN FROM SED
                        
                        ;Plotting of the spectra of the dust species
                        FOR i=0L,Ngrains-1 DO BEGIN
                            testneq = where(st.polsed.(i+1) ne 0,countneq)
                            if countneq ne 0 then begin
                                vecfin = st.polsed.(i+1)*0.0
                            
07372e26   Ilyes Choubani   Corrected huge pl...
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                                vecfin[testneq] = ((st.polsed.(i+1))[testneq])/(st.sed.(i+1))[testneq];extra_spec[testneq];(st.sed.em_tot)[testneq];spec[testneq] ;removed multiplication by 'fact'. 
67bd858a   Ilyes Choubani   Replication of th...
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07372e26   Ilyes Choubani   Corrected huge pl...
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                                ;*****NB: These two lines will have to be modified if the polarization angle varies with the dust species and/or with wavelength
                                polar_ippsi2iqu,st.sed.(i+1)*fact,specqgrain,specugrain,vecfin,replicate(!dustem_psi,n_elements(vecfin)) ;temporary solution
f2caf3f1   Ilyes Choubani   Debugging some er...
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                                ;You can replace the -0 values by 0 in order to avoid atan giving wrong values 
                                testnzero = where(specqgrain EQ -0., ct_nzero)
                                if ct_nzero ne 0 then specqgrain[testnzero] = 0
                                
                                cgoplot,st.polsed.wav,0.5*atan(specugrain, specqgrain)/!dtor,pos=position,noerase=1,color=use_cols[i],xr=xr,/xlog,ytickformat='(A1)',yr=[-90.00,90.00]
                                ;cgoplot,st.polsed.wav,replicate(!dustem_psi,n_elements(vecfin)),pos=position,noerase=1,color=use_cols[i],xr=xr,/xlog,ytickformat='(A1)',yr=[-90.00,90.00]
67bd858a   Ilyes Choubani   Replication of th...
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                            endif 
                        ENDFOR
1bc09467   Ilyes Choubani   fixed issue with ...
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67bd858a   Ilyes Choubani   Replication of th...
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                        ;Plotting of the plugins.
                        for i=0L,n_plgns-1 do begin
                            
                            if isa((*!dustem_plugin).(0).spec) then begin
                                IF total(strsplit((*(*!dustem_plugin).(i).scope),'+',/extract) EQ 'ADD_POLSED') THEN begin
                                    ;dustem_plot_mlog,st.polsed.wav,(*(*!dustem_plugin).(i))[*,1],ppositions=position, /overplot, noerase=1, color=clrs_plgns[i], linestyle=2,xr=xr,/xlog
d7a2d8eb   Ilyes Choubani   typo
1207
                                    cgoplot,st.polsed.wav,0.5*atan((*(*!dustem_plugin).(i).spec)[*,2],(*(*!dustem_plugin).(i).spec)[*,1])/degtorad,pos=position,noerase=1, color=clrs_plgns[i], linestyle=2 ,xr=xr,/xlog,ytickformat='(A1)',yr=[-90.00,90.00]   
67bd858a   Ilyes Choubani   Replication of th...
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                                ENDIF
                            ENDIF
                        endfor
1bc09467   Ilyes Choubani   fixed issue with ...
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67bd858a   Ilyes Choubani   Replication of th...
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                         ;PLotting of the interpolates corresponding to spectrum and filter points
                        
                         IF ct_spec NE 0 THEN BEGIN
                         
                             xx=((*!dustem_data.psi_em).wav)[idx_spec]
                             yy=dustem_interp[idx_spec]
                             cgoplot,xx,yy,color='Indian Red',pos=position,psym=7,syms=2,noerase=1   
                         ENDIF
1bc09467   Ilyes Choubani   fixed issue with ...
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67bd858a   Ilyes Choubani   Replication of th...
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                         IF ct_filt NE 0 THEN BEGIN
                             xx=((*!dustem_data.psi_em).wav)[idx_filt]
                             yy=dustem_interp[idx_filt]
                             cgoplot,xx,yy,color='red',pos=position,psym=6,syms=2,noerase=1
                         ENDIF
1bc09467   Ilyes Choubani   fixed issue with ...
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67bd858a   Ilyes Choubani   Replication of th...
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                         ;Plotting of the total dust emission spectrum
                         ;cgoplot,st.sed.wav,0.5*atan(specu,specq)/degtorad,pos=position,noerase=1,/xlog,/ys,/xs
                         cgoplot,st.sed.wav,dustem_spec,pos=position,noerase=1,/xlog,/ys,/xs               
1bc09467   Ilyes Choubani   fixed issue with ...
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67bd858a   Ilyes Choubani   Replication of th...
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                    endif else begin ;The data points in the plot that remain unchanged.
                        
                        
                        ;Plotting of frequency axis
                        ;cgaxis, xaxis=1, xlog=1, xs=1, xminor=10, xticklen=0.05, xrange=((!const.c*1E6/(_extra.(ind_xr)))*1E-9),charsize=1.15,title=textoidl('\nu (GHz)')
                        
                        
                        ;Spectrum points are treated before for plotting reasons. 
                        if ct_spec ne 0 then begin 
                            
                            ;Plotting of spectrum data points (to be fitted)
                            cgplot,((*!dustem_data.psi_em).wav)(idx_spec),((*!dustem_data.psi_em).values)(idx_spec),/xlog,/ys,xs=1,pos=position,noerase=1,xtit=' ',charsize=1.15,xtickformat='(A1)',color='Powder Blue',xr=xr,yr=[-90.00,90.00],psym=16,syms=0.8;,ytickformat='dstmwrp_exp'                
                            
                            ;Plotting of the spectrum error points
                            rms=3.*((*!dustem_data.psi_em).sigma)(idx_spec)/2.
                            cgerrplot,((*!dustem_data.psi_em).wav)(idx_spec),((*!dustem_data.psi_em).values)(idx_spec)-rms,((*!dustem_data.psi_em).values)(idx_spec)+rms,color='Powder Blue'

                        endif
                        
                        if ct_filt ne 0 then begin
                        
                            ;Plotting of filter data points (to be fitted) + testing for prior plotting                         
                            if ct_spec ne 0 then cgoplot,((*!dustem_data.psi_em).wav)(idx_filt),((*!dustem_data.psi_em).values)(idx_filt),charsize=1.15,color='Dodger Blue',psym=16,syms=0.8,pos=position,/ys,xs=1,noerase=1,xtickformat='(A1)',xr=xr,yr=[-90.00,90.00],/xlog else $;,ytickformat='dstmwrp_exp'
                                cgplot,((*!dustem_data.psi_em).wav)(idx_filt),((*!dustem_data.psi_em).values)(idx_filt),charsize=1.15,color='Dodger Blue',psym=16,syms=0.8,pos=position,/ys,xs=1,noerase=1,xtickformat='(A1)',xtit=' ',xr=xr,yr=[-90.00,90.00],/xlog;,ytickformat='dstmwrp_exp'
                            
                            
                            ;Plotting of the filter error points
                            rms=3.*((*!dustem_data.psi_em).sigma)(idx_filt)/2.;/dustem_psi_em(idx_filt)
                            cgerrplot,((*!dustem_data.psi_em).wav)(idx_filt),((*!dustem_data.psi_em).values)(idx_filt)-rms,((*!dustem_data.psi_em).values)(idx_filt)+rms,color='Dodger Blue'
                            
                        endif
                        
                        
                        
07372e26   Ilyes Choubani   Corrected huge pl...
1267
                        xyouts,pospltxt[0],pospltxt[1],textoidl('\Psi (deg)'),color=0,/normal,charsize=1.3;,charthick=2.0
67bd858a   Ilyes Choubani   Replication of th...
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                        ;Locating all the hidden data points (spectrum+filter)
                        
                        ;The filtering has been done prior (in the primary routine)
                        match2,((*!dustem_data.psi_em).wav),((*!dustem_show.psi_em).wav),show_psi_empts,fit_psi_empts ;only show_psi_empts is needed
                        idx_rmv_psi_em=where(show_psi_empts eq -1, ct_hdnpts) ; indices of the points to hide
                        ;stop
                        ;Locating the hidden spectrum and filter data points                                        
                        idx_filt_hdn = where(((*!dustem_show.psi_em).filt_names)(idx_rmv_psi_em) NE 'SPECTRUM',ct_filt_hdn)
                        idx_spec_hdn = where(((*!dustem_show.psi_em).filt_names)(idx_rmv_psi_em) EQ 'SPECTRUM',ct_spec_hdn)
                        if ct_hdnpts ne 0 then begin ;Hidden data points are present 
                            ;stop
                            
                            if ct_spec_hdn ne 0 then begin
                                ;Plotting of hidden spectrum data points
                                cgplot,(((*!dustem_show.psi_em).wav)[idx_rmv_psi_em])(idx_spec_hdn),(((*!dustem_show.psi_em).values)[idx_rmv_psi_em])(idx_spec_hdn),pos=position,/xlog,/ys,xs=1,noerase=1,charsize=1.15,xtickformat='(A1)',color='Black',xr=xr,yr=[-90.00,90.00],psym=8,syms=0.8
                                
                                ;Plotting of hidden spectrum error points
                                rms=3.*(((*!dustem_show.psi_em).sigma)[idx_rmv_psi_em])(idx_spec_hdn)/2.
                                cgerrplot,(((*!dustem_show.psi_em).wav)[idx_rmv_psi_em])(idx_spec_hdn),(((*!dustem_show.psi_em).values)[idx_rmv_psi_em])(idx_spec_hdn)-rms,(((*!dustem_show.psi_em).values)[idx_rmv_psi_em])(idx_spec_hdn)+rms,color='Black'
                            endif                                           
                            
                            if ct_filt_hdn ne 0 then begin
                                ;stop
                                plotsym,0, /fill
                                ;Plotting of hidden filter data points 
                                cgplot,(((*!dustem_show.psi_em).wav)[idx_rmv_psi_em])(idx_filt_hdn),(((*!dustem_show.psi_em).values)[idx_rmv_psi_em])(idx_filt_hdn),pos=position,/xlog,/ys,xs=1,noerase=1,charsize=1.15,xtickformat='(A1)',color='Black',xr=xr,yr=[-90.00,90.00],psym=8,syms=0.8                                           
                                ;stop
                                ;Plotting of hidden filter error point
                                rms=3.*(((*!dustem_show.psi_em).sigma)[idx_rmv_psi_em])(idx_filt_hdn)/2.
                                cgerrplot,(((*!dustem_show.psi_em).wav)[idx_rmv_psi_em])(idx_filt_hdn),(((*!dustem_show.psi_em).values)[idx_rmv_psi_em])(idx_filt_hdn)-rms,(((*!dustem_show.psi_em).values)[idx_rmv_psi_em])(idx_filt_hdn)+rms,color='Black'
                                 
                            endif 
                                                           
                        endif 
                        
                        
                           
                        ;stop
                        
                        
                        
                        
                        
                        
                    
                    endelse 
                
                
                
                ;endelse 
            
            endelse 
        ;stop
           
           
        end
        
        'PSI_EXT': begin ;MODIFYING THIS NOW - You should write a plugin for the modification of polarized extinction so that !dustem_psi_ext is different than !dustem_psi. 
        
        
            idx_filt=where((*!dustem_data.psi_ext).filt_names NE 'SPECTRUM',ct_filt)
            idx_spec=where((*!dustem_data.psi_ext).filt_names EQ 'SPECTRUM',ct_spec)
            
            ;#1) get the plotting keywords (pertaining to each data set) @here when the _extra structure is ready
            
            if keyword_set(nodata) then begin ;when the data is not present
            
                    xtit = ''
                    cgplot,wavs,wavs*0.,/nodata,/xlog,/ys,xs=1,pos=position,noerase=1,charsize=1.15,xtickformat='(A1)',color='Powder Blue',xr=xr,xtit='',yr=[-90.00,90.00],psym=8,syms=0.8  
f2caf3f1   Ilyes Choubani   Debugging some er...
1338
                    xyouts,pospltxt[0],pospltxt[1],textoidl('\Psi_{EXT} (deg)'),color=0,/normal,charsize=1.3;,charthick=2.0
67bd858a   Ilyes Choubani   Replication of th...
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            endif else begin ;when the data is present ; normal plot     
                        
                    if keyword_set(refresh) then begin ;The data points in the plot are being refreshed
                        
                        ;##################TAKEN FROM SED
                        
                        ;Plotting of the spectra of the dust species
                        FOR i=0L,Ngrains-1 DO BEGIN
07372e26   Ilyes Choubani   Corrected huge pl...
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                            vecto = transpose((st.polext.(1))[i,*]+(st.polext.(2))[i,*])
                            vecte = transpose(((st.ext.(1))[i,*]+(st.ext.(2))[i,*]))
                            testneq = where(vecto ne 0,countneq)
f2caf3f1   Ilyes Choubani   Debugging some er...
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                            ;testing whether the polext values contain negative ones
                            testpos = where(vecto LT 0, countpos)
                            IF countpos NE 0 THEN vecto[testpos] = 0
                          
67bd858a   Ilyes Choubani   Replication of th...
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                            if countneq ne 0 then begin
67bd858a   Ilyes Choubani   Replication of th...
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f2caf3f1   Ilyes Choubani   Debugging some er...
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                                vecfin = vecto*0.0
67bd858a   Ilyes Choubani   Replication of th...
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07372e26   Ilyes Choubani   Corrected huge pl...
1360
                                vecfin[testneq] = (vecto[testneq])/vecte[testneq];extra_spec[testneq];(st.sed.em_tot)[testneq];spec[testneq] ;removed multiplication by 'fact'. 
67bd858a   Ilyes Choubani   Replication of th...
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f2caf3f1   Ilyes Choubani   Debugging some er...
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                                polar_ippsi2iqu,vecte*(*!dustem_HCD)/1.0e21,specqgrain,specugrain,vecfin,replicate(!dustem_psi_ext,n_elements(vecfin)) ;temporary solution
                                 
afde94a3   Ilyes Choubani   general update
1364
                                cgoplot,1/st.polext.wav,0.5*atan(specugrain,specqgrain)/degtorad,pos=position,noerase=1,color=use_cols[i],xr=xr,/xlog,ytickformat='(A1)',yr=[-90.00,90.00]
67bd858a   Ilyes Choubani   Replication of th...
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                            endif 
                        ENDFOR
f2caf3f1   Ilyes Choubani   Debugging some er...
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                        ;Plotting of the plugins.
                        for i=0L,n_plgns-1 do begin
                            
                            if isa((*!dustem_plugin).(0).spec) then begin
                                IF total(strsplit((*(*!dustem_plugin).(i).scope),'+',/extract) EQ 'ADD_POLEXT') THEN begin
                                    ;dustem_plot_mlog,st.polsed.wav,(*(*!dustem_plugin).(i))[*,1],ppositions=position, /overplot, noerase=1, color=clrs_plgns[i], linestyle=2,xr=xr,/xlog
afde94a3   Ilyes Choubani   general update
1374
                                    cgoplot_mlog,1/st.polext.wav,0.5*atan((*(*!dustem_plugin).(i).spec)[*,2],(*(*!dustem_plugin).(i).spec)[*,1])/degtorad,pos=position,noerase=1, color=clrs_plgns[i], linestyle=2 ,xr=xr,/xlog,ytickformat='(A1)',yr=[-90.00,90.00]   
67bd858a   Ilyes Choubani   Replication of th...
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                                ENDIF
                            ENDIF
                        endfor
                        
                         ;PLotting of the interpolates corresponding to spectrum and filter points
                        
                         IF ct_spec NE 0 THEN BEGIN
                         
                             xx=((*!dustem_data.psi_ext).wav)[idx_spec]
                             yy=dustem_interp[idx_spec]
1bc09467   Ilyes Choubani   fixed issue with ...
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                             cgoplot,1/xx,yy,color='Indian Red',pos=position,psym=7,syms=2,noerase=1   
67bd858a   Ilyes Choubani   Replication of th...
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                         ENDIF
                         
                         
                         IF ct_filt NE 0 THEN BEGIN
                             xx=((*!dustem_data.psi_ext).wav)[idx_filt]
                             yy=dustem_interp[idx_filt]
1bc09467   Ilyes Choubani   fixed issue with ...
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                             cgoplot,1/xx,yy,color='red',pos=position,psym=6,syms=2,noerase=1
67bd858a   Ilyes Choubani   Replication of th...
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                         ENDIF
                         
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                         ;Plotting of the total dust emission spectrum
                         ;cgoplot,st.sed.wav,0.5*atan(specu,specq)/degtorad,pos=position,noerase=1,/xlog,/ys,/xs
1bc09467   Ilyes Choubani   fixed issue with ...
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                         cgoplot,1/st.ext.wav,dustem_spec,pos=position,noerase=1,/xlog,/ys,/xs               
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                    endif else begin ;The data points in the plot that remain unchanged.
                        
                        
                        ;Plotting of frequency axis
                        ;cgaxis, xaxis=1, xlog=1, xs=1, xminor=10, xticklen=0.05, xrange=((!const.c*1E6/(_extra.(ind_xr)))*1E-9),charsize=1.15,title=textoidl('\nu (GHz)')
                        
                        
                        ;Spectrum points are treated before for plotting reasons. 
                        if ct_spec ne 0 then begin 
                            
                            ;Plotting of spectrum data points (to be fitted)
07372e26   Ilyes Choubani   Corrected huge pl...
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                            cgplot,1/((*!dustem_data.psi_ext).wav)(idx_spec),((*!dustem_data.psi_ext).values)(idx_spec),/xlog,/ys,xs=1,pos=position,noerase=1,xtit=' ',charsize=1.15,xtickformat='(A1)',color='Powder Blue',xr=xr,yr=[-90.00,90.00],psym=16,syms=0.8;,ytickformat='dstmwrp_exp'                
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                            ;Plotting of the spectrum error points
                            rms=3.*((*!dustem_data.psi_ext).sigma)(idx_spec)/2.
1bc09467   Ilyes Choubani   fixed issue with ...
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                            cgerrplot,1/((*!dustem_data.psi_ext).wav)(idx_spec),((*!dustem_data.psi_ext).values)(idx_spec)-rms,((*!dustem_data.psi_ext).values)(idx_spec)+rms,color='Powder Blue'
67bd858a   Ilyes Choubani   Replication of th...
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                        endif
                        
                        if ct_filt ne 0 then begin
                        
                            ;Plotting of filter data points (to be fitted) + testing for prior plotting                         
1bc09467   Ilyes Choubani   fixed issue with ...
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                            if ct_spec ne 0 then cgoplot,1/((*!dustem_data.psi_ext).wav)(idx_filt),((*!dustem_data.psi_ext).values)(idx_filt),charsize=1.15,color='Dodger Blue',psym=16,syms=0.8,pos=position,/ys,xs=1,noerase=1,xtickformat='(A1)',xr=xr,yr=[-90.00,90.00],/xlog else $;,ytickformat='dstmwrp_exp'
                                cgplot,1/((*!dustem_data.psi_ext).wav)(idx_filt),((*!dustem_data.psi_ext).values)(idx_filt),charsize=1.15,color='Dodger Blue',psym=16,syms=0.8,pos=position,/ys,xs=1,noerase=1,xtickformat='(A1)',xtit=' ',xr=xr,yr=[-90.00,90.00],/xlog;,ytickformat='dstmwrp_exp'
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                            ;Plotting of the filter error points
                            rms=3.*((*!dustem_data.psi_ext).sigma)(idx_filt)/2.;/dustem_psi_em(idx_filt)
1bc09467   Ilyes Choubani   fixed issue with ...
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                            cgerrplot,1/((*!dustem_data.psi_ext).wav)(idx_filt),((*!dustem_data.psi_ext).values)(idx_filt)-rms,((*!dustem_data.psi_ext).values)(idx_filt)+rms,color='Dodger Blue'
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                        endif
                        
                        
                        
f2caf3f1   Ilyes Choubani   Debugging some er...
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                        xyouts,pospltxt[0],pospltxt[1],textoidl('\Psi_{EXT} (deg)'),color=0,/normal,charsize=1.3;,charthick=2.0
67bd858a   Ilyes Choubani   Replication of th...
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                        ;Locating all the hidden data points (spectrum+filter)
                        
                        ;The filtering has been done prior (in the primary routine)
                        match2,((*!dustem_data.psi_ext).wav),((*!dustem_show.psi_ext).wav),show_psi_empts,fit_psi_empts ;only show_psi_empts is needed
                        idx_rmv_psi_em=where(show_psi_empts eq -1, ct_hdnpts) ; indices of the points to hide
                        ;stop
                        ;Locating the hidden spectrum and filter data points                                        
                        idx_filt_hdn = where(((*!dustem_show.psi_ext).filt_names)(idx_rmv_psi_em) NE 'SPECTRUM',ct_filt_hdn) ;keeping psi_em notation for counters...
                        idx_spec_hdn = where(((*!dustem_show.psi_ext).filt_names)(idx_rmv_psi_em) EQ 'SPECTRUM',ct_spec_hdn)
                        if ct_hdnpts ne 0 then begin ;Hidden data points are present 
                            ;stop
                            
                            if ct_spec_hdn ne 0 then begin
                                ;Plotting of hidden spectrum data points
1bc09467   Ilyes Choubani   fixed issue with ...
1449
                                cgplot,1/(((*!dustem_show.psi_ext).wav)[idx_rmv_psi_em])(idx_spec_hdn),(((*!dustem_show.psi_ext).values)[idx_rmv_psi_em])(idx_spec_hdn),pos=position,/xlog,/ys,xs=1,noerase=1,charsize=1.15,xtickformat='(A1)',color='Black',xr=xr,yr=[-90.00,90.00],psym=8,syms=0.8
67bd858a   Ilyes Choubani   Replication of th...
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                                ;Plotting of hidden spectrum error points
                                rms=3.*(((*!dustem_show.psi_ext).sigma)[idx_rmv_psi_em])(idx_spec_hdn)/2.
1bc09467   Ilyes Choubani   fixed issue with ...
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                                cgerrplot,1/(((*!dustem_show.psi_ext).wav)[idx_rmv_psi_em])(idx_spec_hdn),(((*!dustem_show.psi_ext).values)[idx_rmv_psi_em])(idx_spec_hdn)-rms,(((*!dustem_show.psi_ext).values)[idx_rmv_psi_em])(idx_spec_hdn)+rms,color='Black'
67bd858a   Ilyes Choubani   Replication of th...
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                            endif                                           
                            
                            if ct_filt_hdn ne 0 then begin
                                ;stop
                                plotsym,0, /fill
                                ;Plotting of hidden filter data points 
1bc09467   Ilyes Choubani   fixed issue with ...
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                                cgplot,1/(((*!dustem_show.psi_ext).wav)[idx_rmv_psi_em])(idx_filt_hdn),(((*!dustem_show.psi_ext).values)[idx_rmv_psi_em])(idx_filt_hdn),pos=position,/xlog,/ys,xs=1,noerase=1,charsize=1.15,xtickformat='(A1)',color='Black',xr=xr,yr=[-90.00,90.00],psym=8,syms=0.8                                           
67bd858a   Ilyes Choubani   Replication of th...
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                                ;stop
                                ;Plotting of hidden filter error point
                                rms=3.*(((*!dustem_show.psi_ext).sigma)[idx_rmv_psi_em])(idx_filt_hdn)/2.
1bc09467   Ilyes Choubani   fixed issue with ...
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                                cgerrplot,1/(((*!dustem_show.psi_ext).wav)[idx_rmv_psi_em])(idx_filt_hdn),(((*!dustem_show.psi_ext).values)[idx_rmv_psi_em])(idx_filt_hdn)-rms,(((*!dustem_show.psi_ext).values)[idx_rmv_psi_em])(idx_filt_hdn)+rms,color='Black'
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                            endif 
                                                           
                        endif 
                        
                    endelse 
                
            endelse 
        
        end
        
        'QSED': begin ; THE ONE I WILL BE WORKING ON
53548c91   Ilyes Choubani   Display of frozen...
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67bd858a   Ilyes Choubani   Replication of th...
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1bc09467   Ilyes Choubani   fixed issue with ...
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            vectw=DINDGEN(1001)*(alog10(1E7) - alog10(1E5))/(1000 - 1L) + alog10(1E5)
            vectw=10^vectw[1:*]
            vectw=[wavs,vectw]
            vectx=vectw*0+1
            
67bd858a   Ilyes Choubani   Replication of th...
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            varvar=where((*!dustem_data.qsed).values GT 0, testpstv)
            varvar=where((*!dustem_data.qsed).values LT 0, testngtv)
            
07372e26   Ilyes Choubani   Corrected huge pl...
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67bd858a   Ilyes Choubani   Replication of th...
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            idx_filt=where((*!dustem_data.qsed).filt_names NE 'SPECTRUM', ct_filt)
            idx_spec=where((*!dustem_data.qsed).filt_names EQ 'SPECTRUM' , ct_spec)
            ;Plotting of frequency axis
            ;cgaxis, xaxis=1, xlog=1, xs=1, xminor=10;, xticklen=0.05, xrange=((!const.c*1E6/(_extra.(ind_xr)))*1E-9),charsize=1.15,title=textoidl('\nu (GHz)') 
            
            ;stop
            ;Locating all the hidden data points (spectrum+filter)
            match2,((*!dustem_data.qsed).wav),((*!dustem_show.qsed).wav),show_sedpts,fit_sedpts ;only show_sedpts is needed
            idx_rmv_sed=where(show_sedpts eq -1, ct_hdnpts) ; indices of the points to hide
            
            ;stop
            
            ;#1) get the plotting keywords (pertaining to each data set) @here when the _extra structure is ready
            
            if keyword_set(nodata) then begin ;when the data is not present
            
                if keyword_set(norm) then begin ;normalized plot
                    
                    xtit=textoidl('\lambda (\mum)')
                    if !run_pol then xtit = ''
1bc09467   Ilyes Choubani   fixed issue with ...
1508
                    cgplot,vectw,vectx,/xlog,/ys,xs=1,pos=position,noerase=1,xtickformat='(A1)',color='Black',xr=xr,xtit=xtit,yr=[0.0,2.0],yticks=2,ymino=2,xticklen=0.1,ytickformat='(F6.2)',charsize=1.0
67bd858a   Ilyes Choubani   Replication of th...
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                    xyouts,pospltxt[0],pospltxt[1],textoidl('norm'),color=0,/normal,charsize=1.1                        
                
                endif else begin ;normal plot
                    
                    cgplot,wavs,wavs,/nodata,/ylog,/xlog,/ys,xs=1,pos=position,noerase=1,charsize=1.15,xtickformat='(A1)',color='Powder Blue',xr=xr,xtit='',yr=yr,psym=8,syms=0.8  
                    ;cgaxis, xaxis=1 ,xlog=1 ,xrange=((!const.c*1E6/xr)*1E-9),charsize=1.15,title=textoidl('\nu (GHz)'),xticklen=0.05,xminor=10
                    xyouts,pospltxt[0],pospltxt[1],textoidl('Q_{\nu} (MJy/sr)'),color=0,/normal,charsize=1.3;,charthick=2.0
                  
                endelse  
                
            
            endif else begin ;when the data is present 
                
                if keyword_set(norm) then begin 
                    
                    if keyword_set(refresh) then begin ;The data points in the plot that are being refreshed 
                        
                        ;MAJOR LOOP OVER THE SING??? - YES BECAUSE YOU NEED TO KNOW WHICH ONE IS THE 
                
                        IF ct_spec NE 0 THEN BEGIN
                            xx=((*!dustem_data.qsed).wav)[idx_spec]
                            yy=dustem_interp[idx_spec]
                            rms=3.*((*!dustem_data.qsed).sigma)(idx_spec)/2.
f2caf3f1   Ilyes Choubani   Debugging some er...
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                            indzero = where(yy NE 0, ct_zero)
                            IF ct_zero NE 0 THEN BEGIN
                                cgoplot,xx[indzero],(((*!dustem_data.qsed).values)(idx_spec))[indzero]/yy[indzero],pos=position,psym=16,color='Powder Blue',syms=0.8,noerase=1 
                                cgerrplot,(((*!dustem_data.qsed).wav)(idx_spec))[indzero],((((*!dustem_data.qsed).values)[idx_spec])[indzero]-rms[indzero])/yy[indzero],((((*!dustem_data.qsed).values)[idx_spec])[indzero]+rms[indzero])/yy[indzero],color='Powder Blue'
                            ENDIF 
67bd858a   Ilyes Choubani   Replication of th...
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                        ENDIF
                        
                        IF ct_filt NE 0 THEN BEGIN
                            ;stop
                            xx=((*!dustem_data.qsed).wav)[idx_filt]
                            yy=dustem_interp[idx_filt]
f2caf3f1   Ilyes Choubani   Debugging some er...
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                            rms=3.*((*!dustem_data.qsed).sigma)(idx_filt)/2.
                            indzero = where(yy NE 0, ct_zero)
                            IF ct_zero NE 0 THEN BEGIN
                                cgoplot,xx[indzero],(((*!dustem_data.qsed).values)(idx_filt))[indzero]/yy[indzero],pos=position,psym=16,color='Dodger Blue',syms=0.8,noerase=1 
                                cgerrplot,(((*!dustem_data.qsed).wav)(idx_filt))[indzero],((((*!dustem_data.qsed).values)[idx_filt])[indzero]-rms[indzero])/yy[indzero],((((*!dustem_data.qsed).values)[idx_filt])[indzero]+rms[indzero])/yy[indzero],color='Dodger Blue' 
                            ENDIF
67bd858a   Ilyes Choubani   Replication of th...
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                        ENDIF
      
                        
                    endif else begin ;The data points in the plot that remain unchanged
                        ;stop
afde94a3   Ilyes Choubani   general update
1554
                        ;stitching an array of 1000 more points (up to 1E7) after the end of the dustem wavelength array (dim=800 elements)
1bc09467   Ilyes Choubani   fixed issue with ...
1555
                        
67bd858a   Ilyes Choubani   Replication of th...
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                        xtit=textoidl('\lambda (\mum)')
                        ;if !run_pol then xtit = ''
afde94a3   Ilyes Choubani   general update
1558
                        cgplot,vectw,vectx,/xlog,/ys,xs=1,pos=position,noerase=1,color='Black',xr=xr,xtit=xtit,yr=[0.0,2.0],yticks=2,ymino=2,xticklen=0.1,ytickformat='(F6.2)',charsize=1.0
67bd858a   Ilyes Choubani   Replication of th...
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                        xyouts,pospltxt[0],pospltxt[1],textoidl('norm'),color=0,/normal,charsize=1.1
                    
                    endelse
                    
                
                endif else begin ; normal plot - STOPPED HERE FOR QSED
                              
                    if keyword_set(refresh) then begin ;The data points in the plot are being refreshed
                        ;stop
                        if keyword_set(positive_only) then begin
     
                            if testpstv ne 0 then begin
                                ;stop
                                FOR i=0L,Ngrains-1 DO BEGIN
                                    
                                    testneq = where(st.polsed.(i+1) ne 0,countneq)
                                    ;stop
                                    if countneq ne 0 then begin 
                                        vecfin = st.polsed.(i+1)*0.0 ;em_tot can be used here right? 
                                        ;stop
07372e26   Ilyes Choubani   Corrected huge pl...
1579
                                        vecfin[testneq] = ((st.polsed.(i+1))[testneq])/((st.sed.(i+1))[testneq]);extra_spec[testneq];(st.sed.em_tot)[testneq];(st.sed.(i+1))[testneq];*fact;(st.sed.(i+1))[testneq]
67bd858a   Ilyes Choubani   Replication of th...
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                                        ;stop
                                        ;polar_ippsi2iqu,st.sed.(i+1)*fact,specqgrain,specugrain,st.polsed.(i+1)*fact/spec,replicate(!dustem_psi,n_elements(spec)) ;temporary solution
                                        polar_ippsi2iqu,st.sed.(i+1)*fact,specqgrain,specugrain,vecfin,replicate(!dustem_psi,n_elements(vecfin)) ;temporary solution
                                        
                                        ;stop
                                        ;dustem_plot_mlog,st.polsed.wav,specqgrain,ppositions=position,/overplot,noerase=1,color=use_cols[i],xr=xr,/xlog 
                                        dustem_plot_mlog,st.polsed.wav,specqgrain,ppositions=position,/positive_only,/overplot,noerase=1,color=use_cols[i],xr=xr,/xlog,/ylog,ytickformat='(A1)',yr=yr
                                        ;stop
                                    endif
                                    ;stop
                                ENDFOR
                                
                                for i=0L,n_plgns-1 do begin
                                    
                                    IF isa((*!dustem_plugin).(0).spec) THEN BEGIN
                                        IF total(strsplit((*(*!dustem_plugin).(i).scope),'+',/extract) EQ 'ADD_POLSED') THEN begin
                                         
                                            ;dustem_plot_mlog,st.polsed.wav,(*(*!dustem_plugin).(i))[*,1],ppositions=position, /overplot, noerase=1, color=clrs_plgns[i], linestyle=2,xr=xr,/xlog
                                            dustem_plot_mlog,st.polsed.wav,(*(*!dustem_plugin).(i).spec)[*,1],ppositions=position,/positive_only,/overplot,noerase=1, color=clrs_plgns[i], linestyle=2 ,xr=xr,/xlog,/ylog,ytickformat='(A1)',yr=yr      
                                        ENDIF
                                    ENDIF
                                endfor
                                
                                IF ct_spec NE 0 THEN BEGIN
                                    xx=((*!dustem_data.qsed).wav)[idx_spec]
                                    yy=dustem_interp[idx_spec]
                                    ;dustem_plot_mlog,xx,yy,ppositions=position,/overplot, noerase=1, color='red',psym=7,syms=2,xr=xr,/xlog
                                    dustem_plot_mlog,xx,yy,ppositions=position,/positive_only, /overplot, noerase=1, color='Indian Red',psym=7,syms=2,xr=xr,/xlog,/ylog,ytickformat='(A1)',yr=yr 
                                ENDIF
                                
                                IF ct_filt NE 0 THEN BEGIN
                                    xx=((*!dustem_data.qsed).wav)[idx_filt]
                                    yy=dustem_interp[idx_filt]
                                    ;dustem_plot_mlog,xx,yy,ppositions=position, /overplot, noerase=1, color='red',psym=6,syms=2,xr=xr,/xlog
                                    dustem_plot_mlog,xx,yy,ppositions=position,/positive_only, /overplot, noerase=1, color='red',psym=6,syms=2,xr=xr,/xlog,/ylog,ytickformat='(A1)',yr=yr
                                ENDIF
                                
                                dustem_plot_mlog,st.polsed.wav,dustem_spec,ppositions=position,/positive_only,/overplot,noerase=1,xr=xr,/xlog,/ylog,ytickformat='(A1)',yr=yr                                    
                            
                            endif
                                    
                        
                        endif
                        
                        ;stop
                        if keyword_set(negative_only) then begin
                            ;stop     
                            if testngtv ne 0 then begin
                            
                                ;stop    
                                ;Plotting of the spectra of the dust species
                                FOR i=0L,Ngrains-1 DO BEGIN
                                    testneq = where(st.polsed.(i+1) ne 0,countneq)
                                    ;stop
                                    if countneq ne 0 then begin 
                                        vecfin = st.polsed.(i+1)*0.0 ;em_tot can be used here right? 
                                        ;stop
07372e26   Ilyes Choubani   Corrected huge pl...
1637
                                        vecfin[testneq] = ((st.polsed.(i+1))[testneq])/((st.sed.(i+1))[testneq]);extra_spec[testneq];(st.sed.em_tot)[testneq];(st.sed.(i+1))[testneq];*fact;(st.sed.(i+1))[testneq] 
67bd858a   Ilyes Choubani   Replication of th...
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                                        ;stop    
                                        polar_ippsi2iqu,st.sed.(i+1)*fact,specqgrain,specugrain,vecfin,replicate(!dustem_psi,n_elements(vecfin)) ;temporary solution
                                        ;stop
                                        ;dustem_plot_mlog,st.polsed.wav,specqgrain,ppositions=position,/overplot,noerase=1,color=use_cols[i],xr=xr,/xlog 
                                        dustem_plot_mlog,st.polsed.wav,specqgrain,ppositions=position,/negative_only,/overplot,noerase=1,color=use_cols[i],xr=xr,/xlog,/ylog,ytickformat='(A1)',yr=yr
                                    endif 
                                ENDFOR
                                ;Plotting of the plugins
                                for i=0L,n_plgns-1 do begin
                                    IF isa((*!dustem_plugin).(0).spec) THEN BEGIN
                                    
                                        IF total(strsplit((*(*!dustem_plugin).(i).scope),'+',/extract) EQ 'ADD_POLSED') THEN begin
     
                                            ;dustem_plot_mlog,st.polsed.wav,(*(*!dustem_plugin).(i))[*,1],ppositions=position, /overplot, noerase=1, color=clrs_plgns[i], linestyle=2,xr=xr,/xlog
                                            dustem_plot_mlog,st.polsed.wav,(*(*!dustem_plugin).(i).spec)[*,1],ppositions=position,/negative_only,/overplot,noerase=1, color=clrs_plgns[i], linestyle=2 ,xr=xr,/xlog,/ylog,ytickformat='(A1)',yr=yr      
                                        ENDIF
                                        
                                    ENDIF
                                endfor
                                ;PLotting of the interpolates corresponding to spectrum and filter points
                                IF ct_spec NE 0 THEN BEGIN
                                    xx=((*!dustem_data.qsed).wav)[idx_spec]
                                    yy=dustem_interp[idx_spec]
                                    ;dustem_plot_mlog,xx,yy,ppositions=position,/overplot, noerase=1, color='red',psym=7,syms=2,xr=xr,/xlog
                                    dustem_plot_mlog,xx,yy,ppositions=position,/negative_only, /overplot, noerase=1, color='Indian Red',psym=7,syms=2,xr=xr,/xlog,/ylog,ytickformat='(A1)',yr=yr 
                                ENDIF
                                
                                IF ct_filt NE 0 THEN BEGIN
                                    xx=((*!dustem_data.qsed).wav)[idx_filt]
                                    yy=dustem_interp[idx_filt]
                                    ;dustem_plot_mlog,xx,yy,ppositions=position, /overplot, noerase=1, color='red',psym=6,syms=2,xr=xr,/xlog
                                    dustem_plot_mlog,xx,yy,ppositions=position,/negative_only, /overplot, noerase=1, color='red',psym=6,syms=2,xr=xr,/xlog,/ylog,ytickformat='(A1)',yr=yr
                                ENDIF
                                ;Plotting of the total dust emission spectrum
                                dustem_plot_mlog,st.polsed.wav,dustem_spec,ppositions=position,/negative_only,/overplot,noerase=1,xr=xr,/xlog,/ylog,ytickformat='(A1)',yr=yr                                    
                            
                            endif
                                    
                        
                        endif
                                                   
                      ;stop             
                    endif else begin ;The data points in the plot that remain unchanged.; DO NOT USE AN ELSE HERE. 
                        ;stop
                        ;cgaxis, xaxis=1,xlog=1, xs=1,charsize=1.5,xtickformat='(A1)'
                        xyouts,pospltxt[0],pospltxt[1],textoidl('Q_{\nu} (MJy/sr)'),color=0,/normal,charsize=1.3;,charthick=2.0  
                        ;if ct_hdnpts ne 0 then begin ;Hidden data points are present 
                            
                        ;Locating the hidden spectrum and filter data points     
                        ;SADLY I STILL DON'T HAVE A SOLUTION FOR THE PLOTTING OF NULL VALUES.                                   
                        ;idx_filt_hdn = where(((*!dustem_show.qsed).filt_names)(idx_rmv_sed) NE 'SPECTRUM',ct_filt_hdn)
                        ;idx_spec_hdn = where(((*!dustem_show.qsed).filt_names)(idx_rmv_sed) EQ 'SPECTRUM',ct_spec_hdn)
                        if ct_hdnpts then begin
                            idx_filt_hdn_pstv = where(((*!dustem_show.qsed).filt_names)(idx_rmv_sed) NE 'SPECTRUM' and ((*!dustem_show.qsed).values)(idx_rmv_sed) gt 0,ct_filt_hdn_pstv)
                            idx_spec_hdn_pstv = where(((*!dustem_show.qsed).filt_names)(idx_rmv_sed) EQ 'SPECTRUM' and ((*!dustem_show.qsed).values)(idx_rmv_sed) gt 0,ct_spec_hdn_pstv)
                            idx_filt_hdn_ngtv = where(((*!dustem_show.qsed).filt_names)(idx_rmv_sed) NE 'SPECTRUM' and ((*!dustem_show.qsed).values)(idx_rmv_sed) lt 0,ct_filt_hdn_ngtv)
                            idx_spec_hdn_ngtv = where(((*!dustem_show.qsed).filt_names)(idx_rmv_sed) EQ 'SPECTRUM' and ((*!dustem_show.qsed).values)(idx_rmv_sed) lt 0,ct_spec_hdn_ngtv)
                        endif
                        
                        
                        if keyword_set(positive_only) then begin
                            ;stop
                            if testpstv ne 0 then begin
                            ;stop
                                ;plotsym, 0
                                
                                if ct_hdnpts then begin
                                
                                    if ct_spec_hdn_pstv ne 0 then begin
                                        xx = (((*!dustem_show.qsed).wav)[idx_rmv_sed])(idx_spec_hdn_pstv)
                                        yy = (((*!dustem_show.qsed).values)[idx_rmv_sed])(idx_spec_hdn_pstv)
                                        rms=3.*(((*!dustem_show.qsed).sigma)[idx_rmv_sed])(idx_spec_hdn_pstv)/2.
                                        
                                        dustem_plot_mlog,xx,yy,ppositions=position,/positive_only,xs=1,noerase=1,charsize=1.15,xtickformat='(A1)',xr=xr,color='Black',psym=16,syms=0.8,/xlog,/ylog,yr=yr
                                        dustem_plot_mlog,xx,yy,ppositions=position,/positive_only,noerase=1,color='Black',/overplot,rms=rms,yr=yr,xtickformat='(A1)',xr=xr,xs=1,/xlog,/ylog;,psym=8,syms=0.8
                                    
                                    endif 
                                    
                                    if ct_filt_hdn_pstv ne 0 then begin
                                    
                                        xx = (((*!dustem_show.qsed).wav)[idx_rmv_sed])(idx_filt_hdn_pstv)
                                        yy = (((*!dustem_show.qsed).values)[idx_rmv_sed])(idx_filt_hdn_pstv)
                                        rms=3.*(((*!dustem_show.qsed).sigma)[idx_rmv_sed])(idx_filt_hdn_pstv)/2.
                                        
                                        dustem_plot_mlog,xx,yy,ppositions=position,/positive_only,xs=1,noerase=1,charsize=1.15,xtickformat='(A1)',xr=xr,color='Black',psym=16,syms=0.8,/xlog,/ylog,yr=yr   
                                        dustem_plot_mlog,xx,yy,ppositions=position,/positive_only,xs=1,noerase=1,color='Black',/overplot,rms=rms,xr=xr,yr=yr,xtickformat='(A1)',/xlog,/ylog;,psym=8,syms=0.8
                                    
                                    endif
                                    
                                endif
                                
                                
                                
                                if ct_spec ne 0 then begin
                                
                                    rms=3.*((*!dustem_data.qsed).sigma)(idx_spec)/2.
                                    ;dustem_plot_mlog,((*!dustem_data.qsed).wav)(idx_spec),-((*!dustem_data.qsed).values)(idx_spec),ppositions=position,charsize=1.15,color='Dodger Blue',psym=16,syms=0.8,xs=1,xr=xr,/nodata,noerase=1,/positive_only,xtickformat='(A1)',xtit='',/xlog,/ylog,yr=yr;,ytickformat='(A1)'
                                    dustem_plot_mlog,((*!dustem_data.qsed).wav)(idx_spec),((*!dustem_data.qsed).values)(idx_spec),ppositions=position,charsize=1.15,color='Dodger Blue',psym=16,syms=0.8,xs=1,xr=xr,noerase=1,/positive_only,xtickformat='(A1)',xtit='',/xlog,/ylog,yr=yr;,ytickformat='(A1)'
                                    dustem_plot_mlog,((*!dustem_data.qsed).wav)(idx_spec),((*!dustem_data.qsed).values)(idx_spec),ppositions=position,color='Dodger Blue',/positive_only,noerase=1,/overplot,rms=rms,xtit='',charsize=1.15,xtickformat='(A1)',xs=1,psym=16,syms=0.8,xr=xr,/xlog,/ylog,yr=yr,ytickformat='(A1)'     
                                 
                                endif
                                
                                if ct_filt ne 0 then begin
                                    
                                    rms=3.*((*!dustem_data.qsed).sigma)(idx_filt)/2.
                                   ; dustem_plot_mlog,((*!dustem_data.qsed).wav)(idx_filt),-1.*((*!dustem_data.qsed).values)(idx_filt),ppositions=position,charsize=1.15,color='Dodger Blue',psym=16,syms=0.8,xs=1,xr=xr,/nodata,noerase=1,/negative_only,xtickformat='(A1)',xtit='',/xlog,/ylog,yr=yr;,ytickformat='(A1)'
                                    dustem_plot_mlog,((*!dustem_data.qsed).wav)(idx_filt),((*!dustem_data.qsed).values)(idx_filt),ppositions=position,charsize=1.15,color='Dodger Blue',psym=16,syms=0.8,xs=1,xr=xr,noerase=1,/positive_only,xtickformat='(A1)',xtit='',/xlog,/ylog,yr=yr;,ytickformat='(A1)'
                                    dustem_plot_mlog,((*!dustem_data.qsed).wav)(idx_filt),((*!dustem_data.qsed).values)(idx_filt),ppositions=position,color='Dodger Blue',/positive_only,noerase=1,/overplot,rms=rms,xtit='',charsize=1.15,xtickformat='(A1)',xs=1,psym=16,syms=0.8,xr=xr,/xlog,/ylog,yr=yr,ytickformat='(A1)'
                                        
                                endif
                            endif else begin
1bc09467   Ilyes Choubani   fixed issue with ...
1749
1750
                            
                            
07372e26   Ilyes Choubani   Corrected huge pl...
1751
                                if ct_spec ne 0 then dustem_plot_mlog,((*!dustem_data.qsed).wav)(idx_spec),-((*!dustem_data.qsed).values)(idx_spec),ppositions=position,charsize=1.15,/nodata,color='Dodger Blue',psym=16,syms=0.8,xs=1,xr=xr,noerase=1,/positive_only,xtickformat='(A1)',xtit='',/xlog,/ylog,yr=yr;,ytickformat='(A1)'
1bc09467   Ilyes Choubani   fixed issue with ...
1752
                                    
67bd858a   Ilyes Choubani   Replication of th...
1753
                                
07372e26   Ilyes Choubani   Corrected huge pl...
1754
                                if ct_filt ne 0 and ct_spec eq 0 then  dustem_plot_mlog,((*!dustem_data.qsed).wav)(idx_filt),-((*!dustem_data.qsed).values)(idx_filt),/nodata,ppositions=position,charsize=1.15,color='Dodger Blue',psym=16,syms=0.8,xs=1,xr=xr,noerase=1,/positive_only,xtickformat='(A1)',xtit='',/xlog,/ylog,yr=yr;,ytickformat='(A1)'
f2caf3f1   Ilyes Choubani   Debugging some er...
1755
                                   
67bd858a   Ilyes Choubani   Replication of th...
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                            endelse                           
                        
                        endif 
                        
                        
                        if keyword_set(negative_only) then begin
                            
                            if testngtv ne 0 then begin
                                 
                                 ;plotsym, 0
                                 
                                 if ct_hdnpts then begin
                                 
                                     if ct_spec_hdn_ngtv ne 0 then begin
                                         xx = (((*!dustem_show.qsed).wav)[idx_rmv_sed])(idx_spec_hdn_ngtv)
                                         yy = (((*!dustem_show.qsed).values)[idx_rmv_sed])(idx_spec_hdn_ngtv)
                                         rms=3.*(((*!dustem_show.qsed).sigma)[idx_rmv_sed])(idx_spec_hdn_ngtv)/2.
                                         
                                         dustem_plot_mlog,xx,yy,ppositions=position,/negative_only,xs=1,noerase=1,charsize=1.15,xtickformat='(A1)',xr=xr,color='Black',psym=16,syms=0.8,/xlog,/ylog,yr=yr
                                         dustem_plot_mlog,xx,yy,ppositions=position,/negative_only,noerase=1,color='Black',/overplot,rms=rms,yr=yr,xtickformat='(A1)',xr=xr,xs=1,/xlog,/ylog;,psym=8,syms=0.8
                                     
                                     endif 
                                     
                                     if ct_filt_hdn_ngtv ne 0 then begin
                                     
                                         xx = (((*!dustem_show.qsed).wav)[idx_rmv_sed])(idx_filt_hdn_ngtv)
                                         yy = (((*!dustem_show.qsed).values)[idx_rmv_sed])(idx_filt_hdn_ngtv)
                                         rms=3.*(((*!dustem_show.qsed).sigma)[idx_rmv_sed])(idx_filt_hdn_ngtv)/2.
                                         
                                         dustem_plot_mlog,xx,yy,ppositions=position,/negative_only,xs=1,noerase=1,charsize=1.15,xtickformat='(A1)',xr=xr,color='Black',psym=16,syms=0.8,/xlog,/ylog,yr=yr   
                                         dustem_plot_mlog,xx,yy,ppositions=position,/negative_only,xs=1,noerase=1,color='Black',/overplot,rms=rms,xr=xr,yr=yr,xtickformat='(A1)',/xlog,/ylog;,psym=8,syms=0.8
                                     
                                     endif
                                
                                 endif

                                 if ct_spec ne 0 then begin
                                 
                                     rms=3.*((*!dustem_data.qsed).sigma)(idx_spec)/2.
                                     ;dustem_plot_mlog,((*!dustem_data.qsed).wav)(idx_spec),-((*!dustem_data.qsed).values)(idx_spec),ppositions=position,charsize=1.15,color='Dodger Blue',psym=16,syms=0.8,xs=1,xr=xr,/nodata,noerase=1,/negative_only,xtickformat='(A1)',xtit='',/xlog,/ylog,yr=yr;,ytickformat='(A1)'
                                    ; if ct_spec_hdn_ngtv ne 0 then dustem_plot_mlog,((*!dustem_data.qsed).wav)(idx_spec),((*!dustem_data.qsed).values)(idx_spec),ppositions=position,/overplot,charsize=1.15,color='Dodger Blue',psym=16,syms=0.8,xs=1,xr=xr,noerase=1,/negative_only,xtickformat='(A1)',xtit='',/xlog,/ylog,yr=yr else begin
                                         dustem_plot_mlog,((*!dustem_data.qsed).wav)(idx_spec),((*!dustem_data.qsed).values)(idx_spec),ppositions=position,charsize=1.15,color='Dodger Blue',psym=16,syms=0.8,xs=1,xr=xr,noerase=1,/negative_only,xtickformat='(A1)',xtit='',/xlog,/ylog,yr=yr;,ytickformat='(A1)'
                                     ;endelse;,ytickformat='(A1)'
                                     dustem_plot_mlog,((*!dustem_data.qsed).wav)(idx_spec),((*!dustem_data.qsed).values)(idx_spec),ppositions=position,color='Dodger Blue',/negative_only,noerase=1,/overplot,rms=rms,xtit='',charsize=1.15,xtickformat='(A1)',xs=1,xr=xr,/xlog,/ylog,yr=yr,ytickformat='(A1)';,psym=16,syms=0.8     
                                  
                                 endif
                                 
                                 if ct_filt ne 0 then begin
                                     
                                     rms=3.*((*!dustem_data.qsed).sigma)(idx_filt)/2.
                                    ; dustem_plot_mlog,((*!dustem_data.qsed).wav)(idx_filt),-1.*((*!dustem_data.qsed).values)(idx_filt),ppositions=position,charsize=1.15,color='Dodger Blue',psym=16,syms=0.8,xs=1,xr=xr,/nodata,noerase=1,/negative_only,xtickformat='(A1)',xtit='',/xlog,/ylog,yr=yr;,ytickformat='(A1)'
                                     ;if ct_filt_hdn_ngtv ne 0 then  dustem_plot_mlog,((*!dustem_data.qsed).wav)(idx_filt),((*!dustem_data.qsed).values)(idx_filt),ppositions=position,charsize=1.15,color='Dodger Blue',/overplot,psym=16,syms=0.8,xs=1,xr=xr,noerase=1,/negative_only,xtickformat='(A1)',xtit='',/xlog,/ylog,yr=yr else begin
                                         dustem_plot_mlog,((*!dustem_data.qsed).wav)(idx_filt),((*!dustem_data.qsed).values)(idx_filt),ppositions=position,charsize=1.15,color='Dodger Blue',psym=16,syms=0.8,xs=1,xr=xr,noerase=1,/negative_only,xtickformat='(A1)',xtit='',/xlog,/ylog,yr=yr;,ytickformat='(A1)'
                                     ;endelse ;,ytickformat='(A1)'
                                     
                                     dustem_plot_mlog,((*!dustem_data.qsed).wav)(idx_filt),((*!dustem_data.qsed).values)(idx_filt),ppositions=position,color='Dodger Blue',/negative_only,noerase=1,/overplot,rms=rms,xtit='',charsize=1.15,xtickformat='(A1)',xs=1,xr=xr,/xlog,/ylog,yr=yr,ytickformat='(A1)'
                                         
                                 endif 
                            
                            endif else begin
1bc09467   Ilyes Choubani   fixed issue with ...
1817
                            
07372e26   Ilyes Choubani   Corrected huge pl...
1818
                                if ct_spec ne 0 then dustem_plot_mlog,((*!dustem_data.qsed).wav)(idx_spec),-((*!dustem_data.qsed).values)(idx_spec),ppositions=position,charsize=1.15,/nodata,color='Dodger Blue',psym=16,syms=0.8,xs=1,xr=xr,noerase=1,/negative_only,xtickformat='(A1)',xtit='',/xlog,/ylog,yr=yr;,ytickformat='(A1)'
1bc09467   Ilyes Choubani   fixed issue with ...
1819
                                    
e0d00de0   Ilyes Choubani   removing stops
1820
                                
07372e26   Ilyes Choubani   Corrected huge pl...
1821
                                if ct_filt ne 0 and ct_spec eq 0 then  dustem_plot_mlog,((*!dustem_data.qsed).wav)(idx_filt),-((*!dustem_data.qsed).values)(idx_filt),/nodata,ppositions=position,charsize=1.15,color='Dodger Blue',psym=16,syms=0.8,xs=1,xr=xr,noerase=1,/negative_only,xtickformat='(A1)',xtit='',/xlog,/ylog,yr=yr;,ytickformat='(A1)'
f2caf3f1   Ilyes Choubani   Debugging some er...
1822
                                  
67bd858a   Ilyes Choubani   Replication of th...
1823
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                            endelse
                            ;stop
                        endif
                        
                    
                    endelse 
                
                
                
                endelse 
            
            endelse ;

        
        END
        
        'USED': begin
1bc09467   Ilyes Choubani   fixed issue with ...
1840
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            vectw=DINDGEN(1001)*(alog10(1E7) - alog10(1E5))/(1000 - 1L) + alog10(1E5)
            vectw=10^vectw[1:*]
            vectw=[wavs,vectw]
            vectx=vectw*0+1
        
67bd858a   Ilyes Choubani   Replication of th...
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            ;SIGN-RELATED PARAMETERS/LOOPS HERE?
            ;negative & positive values regardless of data type (SPECTRUM or FILTER data points)
            varvar=where((*!dustem_data.used).values LT 0, testngtv)
            varvar=where((*!dustem_data.used).values GT 0, testpstv)
            ;stop
            idx_filt=where((*!dustem_data.used).filt_names NE 'SPECTRUM', ct_filt)
            idx_spec=where((*!dustem_data.used).filt_names EQ 'SPECTRUM' , ct_spec)
            ;Plotting of frequency axis
            ;cgaxis, xaxis=1, xlog=1, xs=1, xminor=10;, xticklen=0.05, xrange=((!const.c*1E6/(_extra.(ind_xr)))*1E-9),charsize=1.15,title=textoidl('\nu (GHz)') 
            
            ;stop
            ;Locating all the hidden data points (spectrum+filter)
            match2,((*!dustem_data.used).wav),((*!dustem_show.used).wav),show_sedpts,fit_sedpts ;only show_sedpts is needed
            idx_rmv_sed=where(show_sedpts eq -1, ct_hdnpts) ; indices of the points to hide
            
            ;stop
            ;#1) get the plotting keywords (pertaining to each data set) @here when the _extra structure is ready
            
            if keyword_set(nodata) then begin ;when the data is not present
            
                if keyword_set(norm) then begin ;normalized plot
                    
                    xtit=textoidl('\lambda (\mum)')
                    if !run_pol then xtit = ''
1bc09467   Ilyes Choubani   fixed issue with ...
1870
                    cgplot,vectw,vectx,/xlog,/ys,xs=1,pos=position,noerase=1,xtickformat='(A1)',color='Black',xr=xr,xtit=xtit,yr=[0.0,2.0],yticks=2,ymino=2,xticklen=0.1,ytickformat='(F6.2)',charsize=1.0
67bd858a   Ilyes Choubani   Replication of th...
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                    xyouts,pospltxt[0],pospltxt[1],textoidl('norm'),color=0,/normal,charsize=1.1                        
                
                endif else begin ;normal plot
                    
                    cgplot,wavs,wavs,/nodata,/ylog,/xlog,/ys,xs=1,pos=position,noerase=1,charsize=1.15,xtickformat='(A1)',color='Powder Blue',xr=xr,xtit='',yr=yr,psym=8,syms=0.8  
                    ;cgaxis, xaxis=1 ,xlog=1 ,xrange=((!const.c*1E6/xr)*1E-9),charsize=1.15,title=textoidl('\nu (GHz)'),xticklen=0.05,xminor=10
                    xyouts,pospltxt[0],pospltxt[1],textoidl('U_{\nu} (MJy/sr)'),color=0,/normal,charsize=1.3;,charthick=2.0
                  
                endelse  
                
            
            endif else begin ;when the data is present 
                
                if keyword_set(norm) then begin 
                    
                    if keyword_set(refresh) then begin ;The data points in the plot that are being refreshed 
                        
                        ;MAJOR LOOP OVER THE SING??? - YES BECAUSE YOU NEED TO KNOW WHICH ONE IS THE 
                
                        IF ct_spec NE 0 THEN BEGIN
                            xx=((*!dustem_data.used).wav)[idx_spec]
                            yy=dustem_interp[idx_spec]
                            rms=3.*((*!dustem_data.used).sigma)(idx_spec)/2.
f2caf3f1   Ilyes Choubani   Debugging some er...
1894
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                            indzero = where(yy NE 0, ct_zero)
                            IF ct_zero NE 0 THEN BEGIN
                                cgoplot,xx[indzero],(((*!dustem_data.used).values)(idx_spec))[indzero]/yy[indzero],pos=position,psym=16,color='Powder Blue',syms=0.8,noerase=1 
                                cgerrplot,(((*!dustem_data.used).wav)(idx_spec))[indzero],((((*!dustem_data.used).values)[idx_spec])[indzero]-rms[indzero])/yy[indzero],((((*!dustem_data.used).values)[idx_spec])[indzero]+rms[indzero])/yy[indzero],color='Powder Blue'
                            ENDIF
67bd858a   Ilyes Choubani   Replication of th...
1899
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                        ENDIF
                        
                        IF ct_filt NE 0 THEN BEGIN
                            ;stop
                            xx=((*!dustem_data.used).wav)[idx_filt]
                            yy=dustem_interp[idx_filt]
                            rms=3.*((*!dustem_data.used).sigma)(idx_filt)/2. 
f2caf3f1   Ilyes Choubani   Debugging some er...
1906
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1910
                            indzero = where(yy NE 0, ct_zero)
                            IF ct_zero NE 0 THEN BEGIN
                                cgoplot,xx[indzero],(((*!dustem_data.used).values)(idx_filt))[indzero]/yy[indzero],pos=position,psym=16,color='Dodger Blue',syms=0.8,noerase=1 
                                cgerrplot,(((*!dustem_data.used).wav)(idx_filt))[indzero],((((*!dustem_data.used).values)[idx_filt])[indzero]-rms[indzero])/yy[indzero],((((*!dustem_data.used).values)[idx_filt])[indzero]+rms[indzero])/yy[indzero],color='Dodger Blue' 
                            ENDIF
67bd858a   Ilyes Choubani   Replication of th...
1911
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                        ENDIF
      
                        
                    endif else begin ;The data points in the plot that remain unchanged
                        ;stop
1bc09467   Ilyes Choubani   fixed issue with ...
1916
                        
67bd858a   Ilyes Choubani   Replication of th...
1917
1918
                        xtit=textoidl('\lambda (\mum)')
                        ;if !run_pol then xtit = ''
afde94a3   Ilyes Choubani   general update
1919
                        cgplot,vectw,vectx,/xlog,/ys,xs=1,pos=position,noerase=1,color='Black',xr=xr,xtit=xtit,yr=[0.0,2.0],yticks=2,ymino=2,xticklen=0.1,ytickformat='(F6.2)',charsize=1.0
67bd858a   Ilyes Choubani   Replication of th...
1920
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                        xyouts,pospltxt-[0],pospltxt[1],textoidl('norm'),color=0,/normal,charsize=1.1
                    
                    endelse
                    
                
                endif else begin ; normal plot - STOPPED HERE FOR used
                              
                    if keyword_set(refresh) then begin ;The data points in the plot are being refreshed
                        
                        if keyword_set(positive_only) then begin
     
                            if testpstv ne 0 then begin
                                ;stop
                                FOR i=0L,Ngrains-1 DO BEGIN
                                    
                                    testneq = where(st.polsed.(i+1) ne 0,countneq)
                                    
                                    if countneq ne 0 then begin 
                                        vecfin = st.polsed.(i+1)*0.0 ;em_tot can be used here right? 
                                        
07372e26   Ilyes Choubani   Corrected huge pl...
1940
                                        vecfin[testneq] = ((st.polsed.(i+1))[testneq])/((st.sed.(i+1))[testneq]);extra_spec[testneq];(st.sed.em_tot)[testneq];(st.sed.(i+1))[testneq];*fact;(st.sed.(i+1))[testneq]
67bd858a   Ilyes Choubani   Replication of th...
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                                        polar_ippsi2iqu,st.sed.(i+1)*fact,specqgrain,specugrain,vecfin,replicate(!dustem_psi,n_elements(vecfin)) ;temporary solution
                                        ;dustem_plot_mlog,st.polsed.wav,specqgrain,ppositions=position,/overplot,noerase=1,color=use_cols[i],xr=xr,/xlog 
                                        dustem_plot_mlog,st.polsed.wav,specugrain,ppositions=position,/positive_only,/overplot,noerase=1,color=use_cols[i],xr=xr,/xlog,/ylog,ytickformat='(A1)',yr=yr
                                    endif 
                                    ;stop
                                ENDFOR
                                ;stop
                                for i=0L,n_plgns-1 do begin
                                    
                                    IF isa((*!dustem_plugin).(0).spec) THEN BEGIN
                                    
                                        IF total(strsplit((*(*!dustem_plugin).(i).scope),'+',/extract) EQ 'ADD_POLSED') THEN begin
                                            
                                            ;dustem_plot_mlog,st.polsed.wav,(*(*!dustem_plugin).(i))[*,1],ppositions=position, /overplot, noerase=1, color=clrs_plgns[i], linestyle=2,xr=xr,/xlog
                                            dustem_plot_mlog,st.polsed.wav,(*(*!dustem_plugin).(i).spec)[*,2],ppositions=position,/positive_only,/overplot,noerase=1, color=clrs_plgns[i], linestyle=2 ,xr=xr,/xlog,/ylog,ytickformat='(A1)',yr=yr      
                                        ENDIF
                                        
                                    ENDIF
                                    
                                endfor
                                
                                IF ct_spec NE 0 THEN BEGIN
                                    xx=((*!dustem_data.used).wav)[idx_spec]
                                    yy=dustem_interp[idx_spec]
                                    ;dustem_plot_mlog,xx,yy,ppositions=position,/overplot, noerase=1, color='red',psym=7,syms=2,xr=xr,/xlog
                                    dustem_plot_mlog,xx,yy,ppositions=position,/positive_only, /overplot, noerase=1, color='Indian Red',psym=7,syms=2,xr=xr,/xlog,/ylog,ytickformat='(A1)',yr=yr 
                                ENDIF
                                
                                IF ct_filt NE 0 THEN BEGIN
                                    xx=((*!dustem_data.used).wav)[idx_filt]
                                    yy=dustem_interp[idx_filt]
                                    ;dustem_plot_mlog,xx,yy,ppositions=position, /overplot, noerase=1, color='red',psym=6,syms=2,xr=xr,/xlog
                                    dustem_plot_mlog,xx,yy,ppositions=position,/positive_only, /overplot, noerase=1, color='red',psym=6,syms=2,xr=xr,/xlog,/ylog,ytickformat='(A1)',yr=yr
                                ENDIF
                                
                                dustem_plot_mlog,st.polsed.wav,dustem_spec,ppositions=position,/positive_only,/overplot,noerase=1,xr=xr,/xlog,/ylog,ytickformat='(A1)',yr=yr                                    
                            
                            endif
                                    
                        
                        endif
                        
                        
                        if keyword_set(negative_only) then begin
     
                            if testngtv ne 0 then begin
                            
                                ;Plotting of the spectra of the dust species
                                FOR i=0L,Ngrains-1 DO BEGIN
                                    testneq = where(st.polsed.(i+1) ne 0,countneq)
                                    if countneq ne 0 then begin
                                        vecfin = st.polsed.(i+1)*0.0 ;em_tot can be used here right? 
                                        
07372e26   Ilyes Choubani   Corrected huge pl...
1995
                                        vecfin[testneq] = ((st.polsed.(i+1))[testneq])/((st.sed.(i+1))[testneq]);extra_spec[testneq];(st.sed.em_tot)[testneq];(st.sed.(i+1))[testneq];*fact;(st.sed.(i+1))[testneq]
67bd858a   Ilyes Choubani   Replication of th...
1996
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                                        polar_ippsi2iqu,st.sed.(i+1)*fact,specqgrain,specugrain,vecfin,replicate(!dustem_psi,n_elements(vecfin)) ;temporary solution
                                        ;polar_ippsi2iqu,st.sed.(i+1)*fact,specqgrain,specugrain,st.polsed.(i+1)/st.sed.(i+1),replicate(!dustem_psi,n_elements(spec)) ;temporary solution
                                        ;dustem_plot_mlog,st.polsed.wav,specqgrain,ppositions=position,/overplot,noerase=1,color=use_cols[i],xr=xr,/xlog 
                                        dustem_plot_mlog,st.polsed.wav,specugrain,ppositions=position,/negative_only,/overplot,noerase=1,color=use_cols[i],xr=xr,/xlog,/ylog,ytickformat='(A1)',yr=yr
                                    endif    
                                ENDFOR
                                ;Plotting of the plugins
                                FOR i=0L,n_plgns-1 do begin
                                    IF isa((*!dustem_plugin).(0).spec) THEN BEGIN
                                    
                                        IF total(strsplit((*(*!dustem_plugin).(i).scope),'+',/extract) EQ 'ADD_POLSED') THEN begin
                                            ;dustem_plot_mlog,st.polsed.wav,(*(*!dustem_plugin).(i))[*,1],ppositions=position, /overplot, noerase=1, color=clrs_plgns[i], linestyle=2,xr=xr,/xlog
                                            dustem_plot_mlog,st.polsed.wav,(*(*!dustem_plugin).(i).spec)[*,2],ppositions=position,/negative_only,/overplot,noerase=1, color=clrs_plgns[i], linestyle=2 ,xr=xr,/xlog,/ylog,ytickformat='(A1)',yr=yr      
                                        ENDIF
                                    ENDIF
                                ENDFOR
                                ;PLotting of the interpolates corresponding to spectrum and filter points
                                IF ct_spec NE 0 THEN BEGIN
                                    xx=((*!dustem_data.used).wav)[idx_spec]
                                    yy=dustem_interp[idx_spec]
                                    ;dustem_plot_mlog,xx,yy,ppositions=position,/overplot, noerase=1, color='red',psym=7,syms=2,xr=xr,/xlog
                                    dustem_plot_mlog,xx,yy,ppositions=position,/negative_only, /overplot, noerase=1, color='Indian Red',psym=7,syms=2,xr=xr,/xlog,/ylog,ytickformat='(A1)',yr=yr 
                                ENDIF
                                
                                IF ct_filt NE 0 THEN BEGIN
                                    xx=((*!dustem_data.used).wav)[idx_filt]
                                    yy=dustem_interp[idx_filt]
                                    ;dustem_plot_mlog,xx,yy,ppositions=position, /overplot, noerase=1, color='red',psym=6,syms=2,xr=xr,/xlog
                                    dustem_plot_mlog,xx,yy,ppositions=position,/negative_only, /overplot, noerase=1, color='red',psym=6,syms=2,xr=xr,/xlog,/ylog,ytickformat='(A1)',yr=yr
                                ENDIF
                                
                                ;Plotting of the total dust emission spectrum
                                dustem_plot_mlog,st.polsed.wav,dustem_spec,ppositions=position,/negative_only,/overplot,noerase=1,xr=xr,/xlog,/ylog,ytickformat='(A1)',yr=yr                                    
                            
                            endif
                                    
                        
                        endif
                                                   
                      ;stop             
                    endif else begin ;The data points in the plot that remain unchanged.
                        ;stop
                        ;cgaxis, xaxis=1,xlog=1, xs=1,charsize=1.5,xtickformat='(A1)'
                        xyouts,pospltxt[0],pospltxt[1],textoidl('U_{\nu} (MJy/sr)'),color=0,/normal,charsize=1.3;,charthick=2.0  
                        ;if ct_hdnpts ne 0 then begin ;Hidden data points are present 
                        
                        ;Locating the hidden spectrum and filter data points     
                        ;SADLY I STILL DON'T HAVE A SOLUTION FOR THE PLOTTING OF NULL VALUES.                                   
                        ;idx_filt_hdn = where(((*!dustem_show.used).filt_names)(idx_rmv_sed) NE 'SPECTRUM',ct_filt_hdn)
                        ;idx_spec_hdn = where(((*!dustem_show.used).filt_names)(idx_rmv_sed) EQ 'SPECTRUM',ct_spec_hdn)
                        if ct_hdnpts then begin
                            idx_filt_hdn_pstv = where(((*!dustem_show.used).filt_names)(idx_rmv_sed) NE 'SPECTRUM' and ((*!dustem_show.used).values)(idx_rmv_sed) gt 0,ct_filt_hdn_pstv)
                            idx_spec_hdn_pstv = where(((*!dustem_show.used).filt_names)(idx_rmv_sed) EQ 'SPECTRUM' and ((*!dustem_show.used).values)(idx_rmv_sed) gt 0,ct_spec_hdn_pstv)
                            idx_filt_hdn_ngtv = where(((*!dustem_show.used).filt_names)(idx_rmv_sed) NE 'SPECTRUM' and ((*!dustem_show.used).values)(idx_rmv_sed) lt 0,ct_filt_hdn_ngtv)
                            idx_spec_hdn_ngtv = where(((*!dustem_show.used).filt_names)(idx_rmv_sed) EQ 'SPECTRUM' and ((*!dustem_show.used).values)(idx_rmv_sed) lt 0,ct_spec_hdn_ngtv)
                        endif
                        ;stop
                        
                        if keyword_set(positive_only) then begin
                            ;stop
                            if testpstv ne 0 then begin
                            ;stop
                                plotsym, 0
                                
                                 
                                if ct_spec ne 0 then begin
                                
                                    rms=3.*((*!dustem_data.used).sigma)(idx_spec)/2.
                                    ;dustem_plot_mlog,((*!dustem_data.used).wav)(idx_spec),-((*!dustem_data.used).values)(idx_spec),ppositions=position,charsize=1.15,color='Dodger Blue',psym=16,syms=0.8,xs=1,xr=xr,/nodata,noerase=1,/positive_only,xtickformat='(A1)',xtit='',/xlog,/ylog,yr=yr;,ytickformat='(A1)'
                                    ;if ct_spec_hdn_pstv ne 0 then dustem_plot_mlog,((*!dustem_data.used).wav)(idx_spec),((*!dustem_data.used).values)(idx_spec),ppositions=position,charsize=1.15,/overplot,color='Dodger Blue',psym=16,syms=0.8,xs=1,xr=xr,noerase=1,/positive_only,xtickformat='(A1)',xtit='',/xlog,/ylog,yr=yr else begin
                                        dustem_plot_mlog,((*!dustem_data.used).wav)(idx_spec),((*!dustem_data.used).values)(idx_spec),ppositions=position,charsize=1.15,color='Dodger Blue',psym=16,syms=0.8,xs=1,xr=xr,noerase=1,/positive_only,xtickformat='(A1)',xtit='',/xlog,/ylog,yr=yr
                                    ;endelse;,ytickformat='(A1)'
                                    dustem_plot_mlog,((*!dustem_data.used).wav)(idx_spec),((*!dustem_data.used).values)(idx_spec),ppositions=position,color='Dodger Blue',/positive_only,noerase=1,/overplot,rms=rms,xtit='',xtickformat='(A1)',xs=1,xr=xr,/xlog,/ylog,yr=yr,ytickformat='(A1)'  ;,charsize=1.15,psym=16,syms=0.8
                                 
                                endif
                                
                                if ct_filt ne 0 then begin
                                    
                                    rms=3.*((*!dustem_data.used).sigma)(idx_filt)/2.
                                   ; dustem_plot_mlog,((*!dustem_data.used).wav)(idx_filt),-1.*((*!dustem_data.used).values)(idx_filt),ppositions=position,charsize=1.15,color='Dodger Blue',psym=16,syms=0.8,xs=1,xr=xr,/nodata,noerase=1,/negative_only,xtickformat='(A1)',xtit='',/xlog,/ylog,yr=yr;,ytickformat='(A1)'
                                    ;if ct_filt_hdn_pstv ne 0 then dustem_plot_mlog,((*!dustem_data.used).wav)(idx_filt),((*!dustem_data.used).values)(idx_filt),/overplot,ppositions=position,charsize=1.15,color='Dodger Blue',psym=16,syms=0.8,xs=1,xr=xr,noerase=1,/positive_only,xtickformat='(A1)',xtit='',/xlog,/ylog,yr=yr else begin
                                    dustem_plot_mlog,((*!dustem_data.used).wav)(idx_filt),((*!dustem_data.used).values)(idx_filt),ppositions=position,charsize=1.15,color='Dodger Blue',psym=16,syms=0.8,xs=1,xr=xr,noerase=1,/positive_only,xtickformat='(A1)',xtit='',/xlog,/ylog,yr=yr
                                    ;endelse;,ytickformat='(A1)'
                                    dustem_plot_mlog,((*!dustem_data.used).wav)(idx_filt),((*!dustem_data.used).values)(idx_filt),ppositions=position,color='Dodger Blue',/positive_only,noerase=1,/overplot,rms=rms,xtit='',xtickformat='(A1)',xs=1,xr=xr,/xlog,/ylog,yr=yr,ytickformat='(A1)';,charsize=1.15,psym=16,syms=0.8
                                        
                                endif
                                
                                if ct_hdnpts then begin
                                
                                    if ct_spec_hdn_pstv ne 0 then begin
                                        ;stop
                                        xx = (((*!dustem_show.used).wav)[idx_rmv_sed])(idx_spec_hdn_pstv)
                                        yy = (((*!dustem_show.used).values)[idx_rmv_sed])(idx_spec_hdn_pstv)
                                        rms=3.*(((*!dustem_show.used).sigma)[idx_rmv_sed])(idx_spec_hdn_pstv)/2.
                                        
                                        dustem_plot_mlog,xx,yy,ppositions=position,/positive_only,xs=1,noerase=1,charsize=1.15,xtickformat='(A1)',/overplot,xr=xr,color='Black',psym=16,syms=0.8,/xlog,/ylog,yr=yr
                                        dustem_plot_mlog,xx,yy,ppositions=position,/positive_only,noerase=1,color='Black',/overplot,rms=rms,yr=yr,xtickformat='(A1)',xr=xr,xs=1,/xlog,/ylog;,psym=8,syms=0.8
                                    
                                    endif 
                                    
                                    if ct_filt_hdn_pstv ne 0 then begin
                                        ;stop
                                        xx = (((*!dustem_show.used).wav)[idx_rmv_sed])(idx_filt_hdn_pstv)
                                        yy = (((*!dustem_show.used).values)[idx_rmv_sed])(idx_filt_hdn_pstv)
                                        rms=3.*(((*!dustem_show.used).sigma)[idx_rmv_sed])(idx_filt_hdn_pstv)/2.
                                        
                                        dustem_plot_mlog,xx,yy,ppositions=position,/positive_only,xs=1,noerase=1,charsize=1.15,/overplot,xtickformat='(A1)',xr=xr,color='Black',psym=16,syms=0.8,/xlog,/ylog,yr=yr   
                                        dustem_plot_mlog,xx,yy,ppositions=position,/positive_only,xs=1,noerase=1,color='Black',/overplot,rms=rms,xr=xr,yr=yr,xtickformat='(A1)',/xlog,/ylog;,psym=8,syms=0.8
                                    
                                    endif
                                endif   
                            endif else begin
1bc09467   Ilyes Choubani   fixed issue with ...
2109
                            
07372e26   Ilyes Choubani   Corrected huge pl...
2110
                                if ct_spec ne 0 then dustem_plot_mlog,((*!dustem_data.used).wav)(idx_spec),-((*!dustem_data.used).values)(idx_spec),ppositions=position,charsize=1.15,/nodata,color='Dodger Blue',psym=16,syms=0.8,xs=1,xr=xr,noerase=1,/positive_only,xtickformat='(A1)',xtit='',/xlog,/ylog,yr=yr;,ytickformat='(A1)'
1bc09467   Ilyes Choubani   fixed issue with ...
2111
2112
                                    
                                
07372e26   Ilyes Choubani   Corrected huge pl...
2113
                                if ct_filt ne 0 and ct_spec eq 0 then  dustem_plot_mlog,((*!dustem_data.used).wav)(idx_filt),-((*!dustem_data.used).values)(idx_filt),/nodata,ppositions=position,charsize=1.15,color='Dodger Blue',psym=16,syms=0.8,xs=1,xr=xr,noerase=1,/positive_only,xtickformat='(A1)',xtit='',/xlog,/ylog,yr=yr;,ytickformat='(A1)'
f2caf3f1   Ilyes Choubani   Debugging some er...
2114
                                
67bd858a   Ilyes Choubani   Replication of th...
2115
                            endelse                          
18e4331f   Ilyes Choubani   general update (f...
2116
                        
67bd858a   Ilyes Choubani   Replication of th...
2117
                        endif 
18e4331f   Ilyes Choubani   general update (f...
2118
                        
67bd858a   Ilyes Choubani   Replication of th...
2119
                        if keyword_set(negative_only) then begin
18e4331f   Ilyes Choubani   general update (f...
2120
                            ;stop
67bd858a   Ilyes Choubani   Replication of th...
2121
2122
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                            if testngtv ne 0 then begin
                                 
                                 plotsym, 0
                                 
                                 
                                 if ct_spec ne 0 then begin
                                 
                                     rms=3.*((*!dustem_data.used).sigma)(idx_spec)/2.
                                     ;dustem_plot_mlog,((*!dustem_data.used).wav)(idx_spec),-((*!dustem_data.used).values)(idx_spec),ppositions=position,charsize=1.15,color='Dodger Blue',psym=16,syms=0.8,xs=1,xr=xr,/nodata,noerase=1,/negative_only,xtickformat='(A1)',xtit='',/xlog,/ylog,yr=yr;,ytickformat='(A1)'
                                     ;if ct_spec_hdn_ngtv ne 0 then dustem_plot_mlog,((*!dustem_data.used).wav)(idx_spec),((*!dustem_data.used).values)(idx_spec),ppositions=position,/overplot,charsize=1.15,color='Dodger Blue',psym=16,syms=0.8,xs=1,xr=xr,noerase=1,/negative_only,xtickformat='(A1)',xtit='',/xlog,/ylog,yr=yr else begin
                                     dustem_plot_mlog,((*!dustem_data.used).wav)(idx_spec),((*!dustem_data.used).values)(idx_spec),ppositions=position,charsize=1.15,color='Dodger Blue',psym=16,syms=0.8,xs=1,xr=xr,noerase=1,/negative_only,xtickformat='(A1)',xtit='',/xlog,/ylog,yr=yr;,ytickformat='(A1)'
                                     ;endelse;,ytickformat='(A1)'
                                     dustem_plot_mlog,((*!dustem_data.used).wav)(idx_spec),((*!dustem_data.used).values)(idx_spec),ppositions=position,color='Dodger Blue',/negative_only,noerase=1,/overplot,rms=rms,xtit='',charsize=1.15,xtickformat='(A1)',xs=1,psym=16,syms=0.8,xr=xr,/xlog,/ylog,yr=yr,ytickformat='(A1)'     
                                  
                                 endif
                                 
                                 if ct_filt ne 0 then begin
                                     
                                     rms=3.*((*!dustem_data.used).sigma)(idx_filt)/2.
                                    ; dustem_plot_mlog,((*!dustem_data.used).wav)(idx_filt),-1.*((*!dustem_data.used).values)(idx_filt),ppositions=position,charsize=1.15,color='Dodger Blue',psym=16,syms=0.8,xs=1,xr=xr,/nodata,noerase=1,/negative_only,xtickformat='(A1)',xtit='',/xlog,/ylog,yr=yr;,ytickformat='(A1)'
                                     ;if ct_filt_hdn_ngtv ne 0 then  dustem_plot_mlog,((*!dustem_data.used).wav)(idx_filt),((*!dustem_data.used).values)(idx_filt),ppositions=position,charsize=1.15,color='Dodger Blue',/overplot,psym=16,syms=0.8,xs=1,xr=xr,noerase=1,/negative_only,xtickformat='(A1)',xtit='',/xlog,/ylog,yr=yr else begin
                                     dustem_plot_mlog,((*!dustem_data.used).wav)(idx_filt),((*!dustem_data.used).values)(idx_filt),ppositions=position,charsize=1.15,color='Dodger Blue',psym=16,syms=0.8,xs=1,xr=xr,noerase=1,/negative_only,xtickformat='(A1)',xtit='',/xlog,/ylog,yr=yr;,ytickformat='(A1)'
                                     ;endelse ;,ytickformat='(A1)'
                                     
                                     dustem_plot_mlog,((*!dustem_data.used).wav)(idx_filt),((*!dustem_data.used).values)(idx_filt),ppositions=position,color='Dodger Blue',/negative_only,noerase=1,/overplot,rms=rms,xtit='',charsize=1.15,xtickformat='(A1)',xs=1,psym=16,syms=0.8,xr=xr,/xlog,/ylog,yr=yr,ytickformat='(A1)'
                                         
                                 endif
                                 
                                 if ct_hdnpts then begin
                                 
                                     if ct_spec_hdn_ngtv ne 0 then begin
                                         xx = (((*!dustem_show.used).wav)[idx_rmv_sed])(idx_spec_hdn_ngtv)
                                         yy = (((*!dustem_show.used).values)[idx_rmv_sed])(idx_spec_hdn_ngtv)
                                         rms=3.*(((*!dustem_show.used).sigma)[idx_rmv_sed])(idx_spec_hdn_ngtv)/2.
                                         
                                         dustem_plot_mlog,xx,yy,ppositions=position,/negative_only,xs=1,noerase=1,charsize=1.15,xtickformat='(A1)',/overplot,xr=xr,color='Black',psym=16,syms=0.8,/xlog,/ylog,yr=yr
                                         dustem_plot_mlog,xx,yy,ppositions=position,/negative_only,noerase=1,color='Black',/overplot,rms=rms,yr=yr,xtickformat='(A1)',xr=xr,xs=1,/xlog,/ylog;,psym=8,syms=0.8
                                     
                                     endif 
                                     
                                     if ct_filt_hdn_ngtv ne 0 then begin
                                     
                                         xx = (((*!dustem_show.used).wav)[idx_rmv_sed])(idx_filt_hdn_ngtv)
                                         yy = (((*!dustem_show.used).values)[idx_rmv_sed])(idx_filt_hdn_ngtv)
                                         rms=3.*(((*!dustem_show.used).sigma)[idx_rmv_sed])(idx_filt_hdn_ngtv)/2.
                                         
                                         dustem_plot_mlog,xx,yy,ppositions=position,/negative_only,xs=1,noerase=1,charsize=1.15,xtickformat='(A1)',/overplot,xr=xr,color='Black',psym=16,syms=0.8,/xlog,/ylog,yr=yr   
                                         dustem_plot_mlog,xx,yy,ppositions=position,/negative_only,xs=1,noerase=1,color='Black',/overplot,rms=rms,xr=xr,yr=yr,xtickformat='(A1)',/xlog,/ylog;,psym=8,syms=0.8
                                     
                                     endif

                                 endif 
18e4331f   Ilyes Choubani   general update (f...
2173
                            
67bd858a   Ilyes Choubani   Replication of th...
2174
                            endif else begin
1bc09467   Ilyes Choubani   fixed issue with ...
2175
                            
07372e26   Ilyes Choubani   Corrected huge pl...
2176
                                if ct_spec ne 0 then dustem_plot_mlog,((*!dustem_data.used).wav)(idx_spec),-((*!dustem_data.used).values)(idx_spec),ppositions=position,charsize=1.15,/nodata,color='Dodger Blue',psym=16,syms=0.8,xs=1,xr=xr,noerase=1,/negative_only,xtickformat='(A1)',xtit='',/xlog,/ylog,yr=yr;,ytickformat='(A1)'
1bc09467   Ilyes Choubani   fixed issue with ...
2177
2178
                                    
                                
07372e26   Ilyes Choubani   Corrected huge pl...
2179
                                if ct_filt ne 0 and ct_spec eq 0 then  dustem_plot_mlog,((*!dustem_data.used).wav)(idx_filt),-((*!dustem_data.used).values)(idx_filt),/nodata,ppositions=position,charsize=1.15,color='Dodger Blue',psym=16,syms=0.8,xs=1,xr=xr,noerase=1,/negative_only,xtickformat='(A1)',xtit='',/xlog,/ylog,yr=yr;,ytickformat='(A1)'
1bc09467   Ilyes Choubani   fixed issue with ...
2180
                            
f2caf3f1   Ilyes Choubani   Debugging some er...
2181
       
67bd858a   Ilyes Choubani   Replication of th...
2182
2183
2184
                            endelse
                            ;stop
                        endif
18e4331f   Ilyes Choubani   general update (f...
2185
2186
2187
2188
2189
2190
                        
                    
                    endelse 
                
                
                
67bd858a   Ilyes Choubani   Replication of th...
2191
                endelse 
18e4331f   Ilyes Choubani   general update (f...
2192
            
67bd858a   Ilyes Choubani   Replication of th...
2193
2194
            endelse ;

b5314324   Ilyes Choubani   updating the plot...
2195
2196
2197
        
        end
        
afde94a3   Ilyes Choubani   general update
2198
        'QEXT': begin   ;Correct this like you corrected extinction...
1bc09467   Ilyes Choubani   fixed issue with ...
2199
2200
2201
2202
2203
2204
2205
2206
            
            
            vectw=DINDGEN(1001)*(alog10(1E7) - alog10(1E5))/(1000 - 1L) + alog10(1E5)
            vectw=10^vectw[1:*]
            vectw=[wavs,vectw]
            vectx=vectw*0+1
            
            
67bd858a   Ilyes Choubani   Replication of th...
2207
2208
            varvar=where((*!dustem_data.qext).values GT 0, testpstv)
            varvar=where((*!dustem_data.qext).values LT 0, testngtv)
2df3360b   Ilyes Choubani   Correcting error:...
2209
            
18e4331f   Ilyes Choubani   general update (f...
2210
            ;stop
67bd858a   Ilyes Choubani   Replication of th...
2211
2212
            idx_filt=where((*!dustem_data.qext).filt_names NE 'SPECTRUM', ct_filt)
            idx_spec=where((*!dustem_data.qext).filt_names EQ 'SPECTRUM' , ct_spec)
18e4331f   Ilyes Choubani   general update (f...
2213
2214
2215
2216
2217
            ;Plotting of frequency axis
            ;cgaxis, xaxis=1, xlog=1, xs=1, xminor=10;, xticklen=0.05, xrange=((!const.c*1E6/(_extra.(ind_xr)))*1E-9),charsize=1.15,title=textoidl('\nu (GHz)') 
            
            ;stop
            ;Locating all the hidden data points (spectrum+filter)
67bd858a   Ilyes Choubani   Replication of th...
2218
            match2,((*!dustem_data.qext).wav),((*!dustem_show.qext).wav),show_sedpts,fit_sedpts ;only show_sedpts is needed
18e4331f   Ilyes Choubani   general update (f...
2219
            idx_rmv_sed=where(show_sedpts eq -1, ct_hdnpts) ; indices of the points to hide
c8368c6e   Ilyes Choubani   updating plotting...
2220
            
5f04fa07   Ilyes Choubani   general update
2221
            ;stop
bc224f3e   Ilyes Choubani   Update of plottin...
2222
2223
2224
2225
2226
2227
2228
            
            ;#1) get the plotting keywords (pertaining to each data set) @here when the _extra structure is ready
            
            if keyword_set(nodata) then begin ;when the data is not present
            
                if keyword_set(norm) then begin ;normalized plot
                    
f2caf3f1   Ilyes Choubani   Debugging some er...
2229
                    xtit=textoidl('1/\lambda (\mum^{-1})')
bc224f3e   Ilyes Choubani   Update of plottin...
2230
                    if !run_pol then xtit = ''
1bc09467   Ilyes Choubani   fixed issue with ...
2231
                    cgplot,1/vectw,vectx,/xlog,/ys,xs=1,pos=position,noerase=1,xtickformat='(A1)',color='Black',xr=xr,xtit=xtit,yr=[0.0,2.0],yticks=2,ymino=2,xticklen=0.1,ytickformat='(F6.2)',charsize=1.0
bc224f3e   Ilyes Choubani   Update of plottin...
2232
2233
2234
2235
                    xyouts,pospltxt[0],pospltxt[1],textoidl('norm'),color=0,/normal,charsize=1.1                        
                
                endif else begin ;normal plot
                    
18e4331f   Ilyes Choubani   general update (f...
2236
2237
                    cgplot,wavs,wavs,/nodata,/ylog,/xlog,/ys,xs=1,pos=position,noerase=1,charsize=1.15,xtickformat='(A1)',color='Powder Blue',xr=xr,xtit='',yr=yr,psym=8,syms=0.8  
                    ;cgaxis, xaxis=1 ,xlog=1 ,xrange=((!const.c*1E6/xr)*1E-9),charsize=1.15,title=textoidl('\nu (GHz)'),xticklen=0.05,xminor=10
94c4dffa   Ilyes Choubani   update + fixes fo...
2238
                    xyouts,pospltxt[0],pospltxt[1],textoidl('\tau_{QEXT}'),color=0,/normal,charsize=1.3;,charthick=2.0
bc224f3e   Ilyes Choubani   Update of plottin...
2239
2240
2241
2242
2243
                  
                endelse  
                
            
            endif else begin ;when the data is present 
18e4331f   Ilyes Choubani   general update (f...
2244
                
bc224f3e   Ilyes Choubani   Update of plottin...
2245
                if keyword_set(norm) then begin 
c8368c6e   Ilyes Choubani   updating plotting...
2246
                    
bc224f3e   Ilyes Choubani   Update of plottin...
2247
2248
                    if keyword_set(refresh) then begin ;The data points in the plot that are being refreshed 
                        
07372e26   Ilyes Choubani   Corrected huge pl...
2249
                        ;MAJOR LOOP OVER THE SIGN??? - YES BECAUSE YOU NEED TO KNOW WHICH ONE IS THE 
c8368c6e   Ilyes Choubani   updating plotting...
2250
                
18e4331f   Ilyes Choubani   general update (f...
2251
                        IF ct_spec NE 0 THEN BEGIN
f2caf3f1   Ilyes Choubani   Debugging some er...
2252
                            
67bd858a   Ilyes Choubani   Replication of th...
2253
                            xx=((*!dustem_data.qext).wav)[idx_spec]
5f04fa07   Ilyes Choubani   general update
2254
                            yy=dustem_interp[idx_spec]
67bd858a   Ilyes Choubani   Replication of th...
2255
                            rms=3.*((*!dustem_data.qext).sigma)(idx_spec)/2.
f2caf3f1   Ilyes Choubani   Debugging some er...
2256
2257
2258
2259
2260
2261
2262
2263
2264
2265
2266
                            
                            ;testing so that data/yy is finite: 
                            ;avoiding zero points in yy since we divide by it
                            ;testing also if the data is full of zeros (ie: PSI=0 for U and PSI=90 for Q)
                            
                            indzero = where(yy NE 0, ct_zero)
                            if ct_zero ne 0 then begin  

                                cgoplot,(1/xx)[indzero],(((*!dustem_data.qext).values)(idx_spec))[indzero]/yy[indzero],pos=position,psym=16,color='Powder Blue',syms=0.8,noerase=1 
                                cgerrplot,(1/((*!dustem_data.qext).wav)(idx_spec))[indzero],((((*!dustem_data.qext).values)[idx_spec])[indzero]-rms[indzero])/yy[indzero],((((*!dustem_data.qext).values)[idx_spec])[indzero]+rms[indzero])/yy[indzero],color='Powder Blue'
                            endif
18e4331f   Ilyes Choubani   general update (f...
2267
2268
                        ENDIF
                        
bc224f3e   Ilyes Choubani   Update of plottin...
2269
                        IF ct_filt NE 0 THEN BEGIN
18e4331f   Ilyes Choubani   general update (f...
2270
                            ;stop
67bd858a   Ilyes Choubani   Replication of th...
2271
                            xx=((*!dustem_data.qext).wav)[idx_filt]
5f04fa07   Ilyes Choubani   general update
2272
                            yy=dustem_interp[idx_filt]
67bd858a   Ilyes Choubani   Replication of th...
2273
                            rms=3.*((*!dustem_data.qext).sigma)(idx_filt)/2. 
f2caf3f1   Ilyes Choubani   Debugging some er...
2274
2275
2276
2277
2278
                            indzero = where(yy NE 0, ct_zero)
                            IF ct_zero NE 0 THEN BEGIN
                                cgoplot,(1/xx)[indzero],(((*!dustem_data.qext).values)(idx_filt))[indzero]/yy[indzero],pos=position,psym=16,color='Dodger Blue',syms=0.8,noerase=1 
                                cgerrplot,(1/((*!dustem_data.qext).wav)(idx_filt))[indzero],((((*!dustem_data.qext).values)[idx_filt])[indzero]-rms[indzero])/yy[indzero],((((*!dustem_data.qext).values)[idx_filt])[indzero]+rms[indzero])/yy[indzero],color='Dodger Blue' 
                            ENDIF
bc224f3e   Ilyes Choubani   Update of plottin...
2279
                        ENDIF
c8368c6e   Ilyes Choubani   updating plotting...
2280
      
bc224f3e   Ilyes Choubani   Update of plottin...
2281
                        
bc224f3e   Ilyes Choubani   Update of plottin...
2282
                    endif else begin ;The data points in the plot that remain unchanged
18e4331f   Ilyes Choubani   general update (f...
2283
                        ;stop
1bc09467   Ilyes Choubani   fixed issue with ...
2284
                        
f2caf3f1   Ilyes Choubani   Debugging some er...
2285
                        xtit=textoidl('1/\lambda (\mum^{-1})')
1355825c   Ilyes Choubani   General update
2286
                        ;if !run_pol then xtit = ''
afde94a3   Ilyes Choubani   general update
2287
                        cgplot,1/vectw,vectx,/xlog,/ys,xs=1,pos=position,noerase=1,color='Black',xr=xr,xtit=xtit,yr=[0.0,2.0],yticks=2,ymino=2,xticklen=0.1,ytickformat='(F6.2)',charsize=1.0
bc224f3e   Ilyes Choubani   Update of plottin...
2288
2289
2290
2291
2292
                        xyouts,pospltxt[0],pospltxt[1],textoidl('norm'),color=0,/normal,charsize=1.1
                    
                    endelse
                    
                
07372e26   Ilyes Choubani   Corrected huge pl...
2293
                endif else begin ; normal plot 
c8368c6e   Ilyes Choubani   updating plotting...
2294
                              
bc224f3e   Ilyes Choubani   Update of plottin...
2295
                    if keyword_set(refresh) then begin ;The data points in the plot are being refreshed
5f04fa07   Ilyes Choubani   general update
2296
                        ;stop
18e4331f   Ilyes Choubani   general update (f...
2297
2298
                        if keyword_set(positive_only) then begin
     
2df3360b   Ilyes Choubani   Correcting error:...
2299
                            if testpstv ne 0 then begin
5f04fa07   Ilyes Choubani   general update
2300
                                ;stop
18e4331f   Ilyes Choubani   general update (f...
2301
                                FOR i=0L,Ngrains-1 DO BEGIN
5f04fa07   Ilyes Choubani   general update
2302
                                    
07372e26   Ilyes Choubani   Corrected huge pl...
2303
2304
2305
2306
2307
2308
2309
                                    vecto = transpose((st.polext.(1))[i,*]+(st.polext.(2))[i,*])
                                    vecte = transpose((st.ext.(1))[i,*]+(st.ext.(2))[i,*])
                                    testneq = where( vecto ne 0,countneq)
                                    ;testing on  the negative values that can originate in the fortran output (scattering cross sections)
                                    ;testneg = where(((st.polext.(1))[i,*]+(st.polext.(2))[i,*]) lt 0,countneg)
                                    
                                    
5f04fa07   Ilyes Choubani   general update
2310
2311
                                    ;stop
                                    if countneq ne 0 then begin 
07372e26   Ilyes Choubani   Corrected huge pl...
2312
                                        vecfin = vecto*0.0 ;em_tot can be used here right? 
5f04fa07   Ilyes Choubani   general update
2313
                                        ;stop
07372e26   Ilyes Choubani   Corrected huge pl...
2314
                                        vecfin[testneq] = (vecto[testneq])/vecte[testneq];extra_spec[testneq];(st.sed.em_tot)[testneq];(st.sed.(i+1))[testneq];*fact;(st.sed.(i+1))[testneq]
5f04fa07   Ilyes Choubani   general update
2315
2316
                                        ;stop
                                        ;polar_ippsi2iqu,st.sed.(i+1)*fact,specqgrain,specugrain,st.polsed.(i+1)*fact/spec,replicate(!dustem_psi,n_elements(spec)) ;temporary solution
07372e26   Ilyes Choubani   Corrected huge pl...
2317
2318
2319
                                        polar_ippsi2iqu,vecte*(*!dustem_HCD)/1.0e21,specqgrain,specugrain,vecfin,replicate(!dustem_psi_ext,n_elements(vecfin)) ;temporary solution
                                        
                                        ;if countneg ne 0 and cos(!dustem_psi_ext) gt 0 then specqgrain[testneg] = 0
5f04fa07   Ilyes Choubani   general update
2320
                                        
5f04fa07   Ilyes Choubani   general update
2321
                                        ;dustem_plot_mlog,st.polsed.wav,specqgrain,ppositions=position,/overplot,noerase=1,color=use_cols[i],xr=xr,/xlog 
1bc09467   Ilyes Choubani   fixed issue with ...
2322
                                        dustem_plot_mlog,1/st.polext.wav,specqgrain,ppositions=position,/positive_only,/overplot,noerase=1,color=use_cols[i],xr=xr,/xlog,/ylog,ytickformat='(A1)',yr=yr
07372e26   Ilyes Choubani   Corrected huge pl...
2323
                                        
5f04fa07   Ilyes Choubani   general update
2324
2325
                                    endif
                                    ;stop
18e4331f   Ilyes Choubani   general update (f...
2326
2327
2328
                                ENDFOR
                                
                                for i=0L,n_plgns-1 do begin
3c479f24   Ilyes Choubani   Allowing to fix p...
2329
2330
                                    
                                    IF isa((*!dustem_plugin).(0).spec) THEN BEGIN
67bd858a   Ilyes Choubani   Replication of th...
2331
                                        IF total(strsplit((*(*!dustem_plugin).(i).scope),'+',/extract) EQ 'ADD_POLEXT') THEN begin
3c479f24   Ilyes Choubani   Allowing to fix p...
2332
2333
                                         
                                            ;dustem_plot_mlog,st.polsed.wav,(*(*!dustem_plugin).(i))[*,1],ppositions=position, /overplot, noerase=1, color=clrs_plgns[i], linestyle=2,xr=xr,/xlog
1bc09467   Ilyes Choubani   fixed issue with ...
2334
                                            dustem_plot_mlog,1/st.polext.wav,(*(*!dustem_plugin).(i).spec)[*,1],ppositions=position,/positive_only,/overplot,noerase=1, color=clrs_plgns[i], linestyle=2 ,xr=xr,/xlog,/ylog,ytickformat='(A1)',yr=yr      
3c479f24   Ilyes Choubani   Allowing to fix p...
2335
                                        ENDIF
18e4331f   Ilyes Choubani   general update (f...
2336
2337
2338
2339
                                    ENDIF
                                endfor
                                
                                IF ct_spec NE 0 THEN BEGIN
67bd858a   Ilyes Choubani   Replication of th...
2340
                                    xx=((*!dustem_data.qext).wav)[idx_spec]
5f04fa07   Ilyes Choubani   general update
2341
                                    yy=dustem_interp[idx_spec]
18e4331f   Ilyes Choubani   general update (f...
2342
                                    ;dustem_plot_mlog,xx,yy,ppositions=position,/overplot, noerase=1, color='red',psym=7,syms=2,xr=xr,/xlog
1bc09467   Ilyes Choubani   fixed issue with ...
2343
                                    dustem_plot_mlog,1/xx,yy,ppositions=position,/positive_only, /overplot, noerase=1, color='Indian Red',psym=7,syms=2,xr=xr,/xlog,/ylog,ytickformat='(A1)',yr=yr 
18e4331f   Ilyes Choubani   general update (f...
2344
2345
2346
                                ENDIF
                                
                                IF ct_filt NE 0 THEN BEGIN
67bd858a   Ilyes Choubani   Replication of th...
2347
                                    xx=((*!dustem_data.qext).wav)[idx_filt]
5f04fa07   Ilyes Choubani   general update
2348
                                    yy=dustem_interp[idx_filt]
18e4331f   Ilyes Choubani   general update (f...
2349
                                    ;dustem_plot_mlog,xx,yy,ppositions=position, /overplot, noerase=1, color='red',psym=6,syms=2,xr=xr,/xlog
1bc09467   Ilyes Choubani   fixed issue with ...
2350
                                    dustem_plot_mlog,1/xx,yy,ppositions=position,/positive_only, /overplot, noerase=1, color='red',psym=6,syms=2,xr=xr,/xlog,/ylog,ytickformat='(A1)',yr=yr
18e4331f   Ilyes Choubani   general update (f...
2351
2352
                                ENDIF
                                
1bc09467   Ilyes Choubani   fixed issue with ...
2353
                                dustem_plot_mlog,1/st.polext.wav,dustem_spec,ppositions=position,/positive_only,/overplot,noerase=1,xr=xr,/xlog,/ylog,ytickformat='(A1)',yr=yr                                    
07372e26   Ilyes Choubani   Corrected huge pl...
2354
                                
18e4331f   Ilyes Choubani   general update (f...
2355
2356
                            endif
                                    
bc224f3e   Ilyes Choubani   Update of plottin...
2357
                        
18e4331f   Ilyes Choubani   general update (f...
2358
                        endif
bc224f3e   Ilyes Choubani   Update of plottin...
2359
                        
5f04fa07   Ilyes Choubani   general update
2360
                        ;stop
18e4331f   Ilyes Choubani   general update (f...
2361
                        if keyword_set(negative_only) then begin
5f04fa07   Ilyes Choubani   general update
2362
                            ;stop     
2df3360b   Ilyes Choubani   Correcting error:...
2363
                            if testngtv ne 0 then begin
c8368c6e   Ilyes Choubani   updating plotting...
2364
                            
5f04fa07   Ilyes Choubani   general update
2365
                                ;stop    
18e4331f   Ilyes Choubani   general update (f...
2366
2367
                                ;Plotting of the spectra of the dust species
                                FOR i=0L,Ngrains-1 DO BEGIN
07372e26   Ilyes Choubani   Corrected huge pl...
2368
2369
2370
                                    vecto = transpose(((st.polext.(1))[i,*]+(st.polext.(2))[i,*]))
                                    vecte = transpose(((st.ext.(1))[i,*]+(st.ext.(2))[i,*]))
                                    testneq = where(vecto ne 0,countneq)
5f04fa07   Ilyes Choubani   general update
2371
2372
                                    ;stop
                                    if countneq ne 0 then begin 
07372e26   Ilyes Choubani   Corrected huge pl...
2373
                                        vecfin = vecto*0.0 ;em_tot can be used here right? 
5f04fa07   Ilyes Choubani   general update
2374
                                        ;stop
07372e26   Ilyes Choubani   Corrected huge pl...
2375
                                        vecfin[testneq] = (vecto[testneq])/vecte[testneq];extra_spec[testneq];(st.sed.em_tot)[testneq];(st.sed.(i+1))[testneq];*fact;(st.sed.(i+1))[testneq] 
5f04fa07   Ilyes Choubani   general update
2376
                                        ;stop    
07372e26   Ilyes Choubani   Corrected huge pl...
2377
                                        polar_ippsi2iqu,vecte*(*!dustem_HCD)/1.0e21,specqgrain,specugrain,vecfin,replicate(!dustem_psi_ext,n_elements(vecfin)) ;temporary solution
5f04fa07   Ilyes Choubani   general update
2378
2379
                                        ;stop
                                        ;dustem_plot_mlog,st.polsed.wav,specqgrain,ppositions=position,/overplot,noerase=1,color=use_cols[i],xr=xr,/xlog 
1bc09467   Ilyes Choubani   fixed issue with ...
2380
                                        dustem_plot_mlog,1/st.polext.wav,specqgrain,ppositions=position,/negative_only,/overplot,noerase=1,color=use_cols[i],xr=xr,/xlog,/ylog,ytickformat='(A1)',yr=yr
5f04fa07   Ilyes Choubani   general update
2381
                                    endif 
18e4331f   Ilyes Choubani   general update (f...
2382
2383
2384
                                ENDFOR
                                ;Plotting of the plugins
                                for i=0L,n_plgns-1 do begin
3c479f24   Ilyes Choubani   Allowing to fix p...
2385
2386
                                    IF isa((*!dustem_plugin).(0).spec) THEN BEGIN
                                    
67bd858a   Ilyes Choubani   Replication of th...
2387
                                        IF total(strsplit((*(*!dustem_plugin).(i).scope),'+',/extract) EQ 'ADD_POLEXT') THEN begin
3c479f24   Ilyes Choubani   Allowing to fix p...
2388
2389
     
                                            ;dustem_plot_mlog,st.polsed.wav,(*(*!dustem_plugin).(i))[*,1],ppositions=position, /overplot, noerase=1, color=clrs_plgns[i], linestyle=2,xr=xr,/xlog
1bc09467   Ilyes Choubani   fixed issue with ...
2390
                                            dustem_plot_mlog,1/st.polext.wav,(*(*!dustem_plugin).(i).spec)[*,1],ppositions=position,/negative_only,/overplot,noerase=1, color=clrs_plgns[i], linestyle=2 ,xr=xr,/xlog,/ylog,ytickformat='(A1)',yr=yr      
3c479f24   Ilyes Choubani   Allowing to fix p...
2391
2392
                                        ENDIF
                                        
18e4331f   Ilyes Choubani   general update (f...
2393
2394
2395
2396
                                    ENDIF
                                endfor
                                ;PLotting of the interpolates corresponding to spectrum and filter points
                                IF ct_spec NE 0 THEN BEGIN
67bd858a   Ilyes Choubani   Replication of th...
2397
                                    xx=((*!dustem_data.qext).wav)[idx_spec]
5f04fa07   Ilyes Choubani   general update
2398
                                    yy=dustem_interp[idx_spec]
18e4331f   Ilyes Choubani   general update (f...
2399
                                    ;dustem_plot_mlog,xx,yy,ppositions=position,/overplot, noerase=1, color='red',psym=7,syms=2,xr=xr,/xlog
1bc09467   Ilyes Choubani   fixed issue with ...
2400
                                    dustem_plot_mlog,1/xx,yy,ppositions=position,/negative_only, /overplot, noerase=1, color='Indian Red',psym=7,syms=2,xr=xr,/xlog,/ylog,ytickformat='(A1)',yr=yr 
18e4331f   Ilyes Choubani   general update (f...
2401
2402
2403
                                ENDIF
                                
                                IF ct_filt NE 0 THEN BEGIN
67bd858a   Ilyes Choubani   Replication of th...
2404
                                    xx=((*!dustem_data.qext).wav)[idx_filt]
5f04fa07   Ilyes Choubani   general update
2405
                                    yy=dustem_interp[idx_filt]
18e4331f   Ilyes Choubani   general update (f...
2406
                                    ;dustem_plot_mlog,xx,yy,ppositions=position, /overplot, noerase=1, color='red',psym=6,syms=2,xr=xr,/xlog
1bc09467   Ilyes Choubani   fixed issue with ...
2407
                                    dustem_plot_mlog,1/xx,yy,ppositions=position,/negative_only, /overplot, noerase=1, color='red',psym=6,syms=2,xr=xr,/xlog,/ylog,ytickformat='(A1)',yr=yr
18e4331f   Ilyes Choubani   general update (f...
2408
2409
                                ENDIF
                                ;Plotting of the total dust emission spectrum
1bc09467   Ilyes Choubani   fixed issue with ...
2410
                                dustem_plot_mlog,1/st.polext.wav,dustem_spec,ppositions=position,/negative_only,/overplot,noerase=1,xr=xr,/xlog,/ylog,ytickformat='(A1)',yr=yr                                    
18e4331f   Ilyes Choubani   general update (f...
2411
2412
2413
                            
                            endif
                                    
bc224f3e   Ilyes Choubani   Update of plottin...
2414
                        
18e4331f   Ilyes Choubani   general update (f...
2415
2416
2417
2418
2419
2420
                        endif
                                                   
                      ;stop             
                    endif else begin ;The data points in the plot that remain unchanged.; DO NOT USE AN ELSE HERE. 
                        ;stop
                        ;cgaxis, xaxis=1,xlog=1, xs=1,charsize=1.5,xtickformat='(A1)'
94c4dffa   Ilyes Choubani   update + fixes fo...
2421
                        xyouts,pospltxt[0],pospltxt[1],textoidl('\tau_{QEXT}'),color=0,/normal,charsize=1.3;,charthick=2.0  
2df3360b   Ilyes Choubani   Correcting error:...
2422
                        ;if ct_hdnpts ne 0 then begin ;Hidden data points are present 
18e4331f   Ilyes Choubani   general update (f...
2423
                            
2df3360b   Ilyes Choubani   Correcting error:...
2424
2425
2426
2427
                        ;Locating the hidden spectrum and filter data points     
                        ;SADLY I STILL DON'T HAVE A SOLUTION FOR THE PLOTTING OF NULL VALUES.                                   
                        ;idx_filt_hdn = where(((*!dustem_show.qsed).filt_names)(idx_rmv_sed) NE 'SPECTRUM',ct_filt_hdn)
                        ;idx_spec_hdn = where(((*!dustem_show.qsed).filt_names)(idx_rmv_sed) EQ 'SPECTRUM',ct_spec_hdn)
9cb38725   Ilyes Choubani   Fixed tests relat...
2428
                        if ct_hdnpts then begin
67bd858a   Ilyes Choubani   Replication of th...
2429
2430
2431
2432
                            idx_filt_hdn_pstv = where(((*!dustem_show.qext).filt_names)(idx_rmv_sed) NE 'SPECTRUM' and ((*!dustem_show.qext).values)(idx_rmv_sed) gt 0,ct_filt_hdn_pstv)
                            idx_spec_hdn_pstv = where(((*!dustem_show.qext).filt_names)(idx_rmv_sed) EQ 'SPECTRUM' and ((*!dustem_show.qext).values)(idx_rmv_sed) gt 0,ct_spec_hdn_pstv)
                            idx_filt_hdn_ngtv = where(((*!dustem_show.qext).filt_names)(idx_rmv_sed) NE 'SPECTRUM' and ((*!dustem_show.qext).values)(idx_rmv_sed) lt 0,ct_filt_hdn_ngtv)
                            idx_spec_hdn_ngtv = where(((*!dustem_show.qext).filt_names)(idx_rmv_sed) EQ 'SPECTRUM' and ((*!dustem_show.qext).values)(idx_rmv_sed) lt 0,ct_spec_hdn_ngtv)
9cb38725   Ilyes Choubani   Fixed tests relat...
2433
                        endif
bc224f3e   Ilyes Choubani   Update of plottin...
2434
                        
c8368c6e   Ilyes Choubani   updating plotting...
2435
                        
18e4331f   Ilyes Choubani   general update (f...
2436
                        if keyword_set(positive_only) then begin
afde94a3   Ilyes Choubani   general update
2437
                            
2df3360b   Ilyes Choubani   Correcting error:...
2438
                            if testpstv ne 0 then begin
07372e26   Ilyes Choubani   Corrected huge pl...
2439
                        
9cb38725   Ilyes Choubani   Fixed tests relat...
2440
                                ;plotsym, 0
18e4331f   Ilyes Choubani   general update (f...
2441
                                
9cb38725   Ilyes Choubani   Fixed tests relat...
2442
                                if ct_hdnpts then begin
18e4331f   Ilyes Choubani   general update (f...
2443
                                
9cb38725   Ilyes Choubani   Fixed tests relat...
2444
                                    if ct_spec_hdn_pstv ne 0 then begin
67bd858a   Ilyes Choubani   Replication of th...
2445
2446
2447
                                        xx = (((*!dustem_show.qext).wav)[idx_rmv_sed])(idx_spec_hdn_pstv)
                                        yy = (((*!dustem_show.qext).values)[idx_rmv_sed])(idx_spec_hdn_pstv)
                                        rms=3.*(((*!dustem_show.qext).sigma)[idx_rmv_sed])(idx_spec_hdn_pstv)/2.
9cb38725   Ilyes Choubani   Fixed tests relat...
2448
                                        
1bc09467   Ilyes Choubani   fixed issue with ...
2449
2450
                                        dustem_plot_mlog,1/xx,yy,ppositions=position,/positive_only,xs=1,noerase=1,charsize=1.15,xtickformat='(A1)',xr=xr,color='Black',psym=16,syms=0.8,/xlog,/ylog,yr=yr
                                        dustem_plot_mlog,1/xx,yy,ppositions=position,/positive_only,noerase=1,color='Black',/overplot,rms=rms,yr=yr,xtickformat='(A1)',xr=xr,xs=1,/xlog,/ylog;,psym=8,syms=0.8
9cb38725   Ilyes Choubani   Fixed tests relat...
2451
2452
2453
2454
2455
                                    
                                    endif 
                                    
                                    if ct_filt_hdn_pstv ne 0 then begin
                                    
67bd858a   Ilyes Choubani   Replication of th...
2456
2457
2458
                                        xx = (((*!dustem_show.qext).wav)[idx_rmv_sed])(idx_filt_hdn_pstv)
                                        yy = (((*!dustem_show.qext).values)[idx_rmv_sed])(idx_filt_hdn_pstv)
                                        rms=3.*(((*!dustem_show.qext).sigma)[idx_rmv_sed])(idx_filt_hdn_pstv)/2.
9cb38725   Ilyes Choubani   Fixed tests relat...
2459
                                        
1bc09467   Ilyes Choubani   fixed issue with ...
2460
2461
                                        dustem_plot_mlog,1/xx,yy,ppositions=position,/positive_only,xs=1,noerase=1,charsize=1.15,xtickformat='(A1)',xr=xr,color='Black',psym=16,syms=0.8,/xlog,/ylog,yr=yr   
                                        dustem_plot_mlog,1/xx,yy,ppositions=position,/positive_only,xs=1,noerase=1,color='Black',/overplot,rms=rms,xr=xr,yr=yr,xtickformat='(A1)',/xlog,/ylog;,psym=8,syms=0.8
9cb38725   Ilyes Choubani   Fixed tests relat...
2462
2463
                                    
                                    endif
18e4331f   Ilyes Choubani   general update (f...
2464
                                    
18e4331f   Ilyes Choubani   general update (f...
2465
2466
                                endif
                                
9cb38725   Ilyes Choubani   Fixed tests relat...
2467
2468
                                
                                
18e4331f   Ilyes Choubani   general update (f...
2469
2470
                                if ct_spec ne 0 then begin
                                
67bd858a   Ilyes Choubani   Replication of th...
2471
                                    rms=3.*((*!dustem_data.qext).sigma)(idx_spec)/2.
18e4331f   Ilyes Choubani   general update (f...
2472
                                    ;dustem_plot_mlog,((*!dustem_data.qsed).wav)(idx_spec),-((*!dustem_data.qsed).values)(idx_spec),ppositions=position,charsize=1.15,color='Dodger Blue',psym=16,syms=0.8,xs=1,xr=xr,/nodata,noerase=1,/positive_only,xtickformat='(A1)',xtit='',/xlog,/ylog,yr=yr;,ytickformat='(A1)'
afde94a3   Ilyes Choubani   general update
2473
                                
07372e26   Ilyes Choubani   Corrected huge pl...
2474
                                    dustem_plot_mlog,1/((*!dustem_data.qext).wav)(idx_spec),((*!dustem_data.qext).values)(idx_spec),ppositions=position,charsize=1.15,color='Powder Blue',psym=16,syms=0.8,xs=1,xr=xr,noerase=1,/positive_only,xtickformat='(A1)',xtit='',/xlog,/ylog,yr=yr;,ytickformat='(A1)'
1bc09467   Ilyes Choubani   fixed issue with ...
2475
                                    
07372e26   Ilyes Choubani   Corrected huge pl...
2476
                                    dustem_plot_mlog,1/((*!dustem_data.qext).wav)(idx_spec),((*!dustem_data.qext).values)(idx_spec),ppositions=position,color='Powder Blue',/positive_only,noerase=1,/overplot,rms=rms,xtit='',charsize=1.15,xtickformat='(A1)',xs=1,psym=16,syms=0.8,xr=xr,/xlog,/ylog,yr=yr,ytickformat='(A1)'     
1bc09467   Ilyes Choubani   fixed issue with ...
2477
                                     
18e4331f   Ilyes Choubani   general update (f...
2478
2479
2480
2481
                                endif
                                
                                if ct_filt ne 0 then begin
                                    
67bd858a   Ilyes Choubani   Replication of th...
2482
                                    rms=3.*((*!dustem_data.qext).sigma)(idx_filt)/2.
18e4331f   Ilyes Choubani   general update (f...
2483
                                   ; dustem_plot_mlog,((*!dustem_data.qsed).wav)(idx_filt),-1.*((*!dustem_data.qsed).values)(idx_filt),ppositions=position,charsize=1.15,color='Dodger Blue',psym=16,syms=0.8,xs=1,xr=xr,/nodata,noerase=1,/negative_only,xtickformat='(A1)',xtit='',/xlog,/ylog,yr=yr;,ytickformat='(A1)'
1bc09467   Ilyes Choubani   fixed issue with ...
2484
2485
                                    dustem_plot_mlog,1/((*!dustem_data.qext).wav)(idx_filt),((*!dustem_data.qext).values)(idx_filt),ppositions=position,charsize=1.15,color='Dodger Blue',psym=16,syms=0.8,xs=1,xr=xr,noerase=1,/positive_only,xtickformat='(A1)',xtit='',/xlog,/ylog,yr=yr;,ytickformat='(A1)'
                                    dustem_plot_mlog,1/((*!dustem_data.qext).wav)(idx_filt),((*!dustem_data.qext).values)(idx_filt),ppositions=position,color='Dodger Blue',/positive_only,noerase=1,/overplot,rms=rms,xtit='',charsize=1.15,xtickformat='(A1)',xs=1,psym=16,syms=0.8,xr=xr,/xlog,/ylog,yr=yr,ytickformat='(A1)'
18e4331f   Ilyes Choubani   general update (f...
2486
2487
2488
2489
                                        
                                endif
                            endif else begin
                            
1bc09467   Ilyes Choubani   fixed issue with ...
2490
2491
                            
                                if ct_spec ne 0 then dustem_plot_mlog,1/((*!dustem_data.qext).wav)(idx_spec),-((*!dustem_data.qext).values)(idx_spec),ppositions=position,charsize=1.15,/nodata,color='Dodger Blue',psym=16,syms=0.8,xs=1,xr=xr,noerase=1,/positive_only,xtickformat='(A1)',xtit='',/xlog,/ylog,yr=yr;,ytickformat='(A1)'
18e4331f   Ilyes Choubani   general update (f...
2492
                                    
1bc09467   Ilyes Choubani   fixed issue with ...
2493
2494
2495
                                
                                if ct_filt ne 0 and ct_spec eq 0 then  dustem_plot_mlog,1/((*!dustem_data.qext).wav)(idx_filt),-((*!dustem_data.qext).values)(idx_filt),/nodata,ppositions=position,charsize=1.15,color='Dodger Blue',psym=16,syms=0.8,xs=1,xr=xr,noerase=1,/positive_only,xtickformat='(A1)',xtit='',/xlog,/ylog,yr=yr;,ytickformat='(A1)'
                                
f2caf3f1   Ilyes Choubani   Debugging some er...
2496

18e4331f   Ilyes Choubani   general update (f...
2497
                            endelse                           
bc224f3e   Ilyes Choubani   Update of plottin...
2498
                        
18e4331f   Ilyes Choubani   general update (f...
2499
                        endif 
bc224f3e   Ilyes Choubani   Update of plottin...
2500
                        
bc224f3e   Ilyes Choubani   Update of plottin...
2501
                        
18e4331f   Ilyes Choubani   general update (f...
2502
                        if keyword_set(negative_only) then begin
bc224f3e   Ilyes Choubani   Update of plottin...
2503
                            
2df3360b   Ilyes Choubani   Correcting error:...
2504
                            if testngtv ne 0 then begin
18e4331f   Ilyes Choubani   general update (f...
2505
                                 
9cb38725   Ilyes Choubani   Fixed tests relat...
2506
                                 ;plotsym, 0
18e4331f   Ilyes Choubani   general update (f...
2507
                                 
9cb38725   Ilyes Choubani   Fixed tests relat...
2508
                                 if ct_hdnpts then begin
18e4331f   Ilyes Choubani   general update (f...
2509
                                 
9cb38725   Ilyes Choubani   Fixed tests relat...
2510
                                     if ct_spec_hdn_ngtv ne 0 then begin
67bd858a   Ilyes Choubani   Replication of th...
2511
2512
2513
                                         xx = (((*!dustem_show.qext).wav)[idx_rmv_sed])(idx_spec_hdn_ngtv)
                                         yy = (((*!dustem_show.qext).values)[idx_rmv_sed])(idx_spec_hdn_ngtv)
                                         rms=3.*(((*!dustem_show.qext).sigma)[idx_rmv_sed])(idx_spec_hdn_ngtv)/2.
9cb38725   Ilyes Choubani   Fixed tests relat...
2514
                                         
07372e26   Ilyes Choubani   Corrected huge pl...
2515
                                         dustem_plot_mlog,1/xx,yy,ppositions=position,/negative_only,xs=1,noerase=1,charsize=1.15,xtickformat='(A1)',xr=xr,color='Black',psym=16,syms=0.8,/xlog,/ylog,yr=yr
1bc09467   Ilyes Choubani   fixed issue with ...
2516
                                         dustem_plot_mlog,1/xx,yy,ppositions=position,/negative_only,noerase=1,color='Black',/overplot,rms=rms,yr=yr,xtickformat='(A1)',xr=xr,xs=1,/xlog,/ylog;,psym=8,syms=0.8
18e4331f   Ilyes Choubani   general update (f...
2517
                                     
9cb38725   Ilyes Choubani   Fixed tests relat...
2518
2519
2520
2521
                                     endif 
                                     
                                     if ct_filt_hdn_ngtv ne 0 then begin
                                     
67bd858a   Ilyes Choubani   Replication of th...
2522
2523
2524
                                         xx = (((*!dustem_show.qext).wav)[idx_rmv_sed])(idx_filt_hdn_ngtv)
                                         yy = (((*!dustem_show.qext).values)[idx_rmv_sed])(idx_filt_hdn_ngtv)
                                         rms=3.*(((*!dustem_show.qext).sigma)[idx_rmv_sed])(idx_filt_hdn_ngtv)/2.
9cb38725   Ilyes Choubani   Fixed tests relat...
2525
                                         
1bc09467   Ilyes Choubani   fixed issue with ...
2526
2527
                                         dustem_plot_mlog,1/xx,yy,ppositions=position,/negative_only,xs=1,noerase=1,charsize=1.15,xtickformat='(A1)',xr=xr,color='Black',psym=16,syms=0.8,/xlog,/ylog,yr=yr   
                                         dustem_plot_mlog,1/xx,yy,ppositions=position,/negative_only,xs=1,noerase=1,color='Black',/overplot,rms=rms,xr=xr,yr=yr,xtickformat='(A1)',/xlog,/ylog;,psym=8,syms=0.8
9cb38725   Ilyes Choubani   Fixed tests relat...
2528
2529
2530
                                     
                                     endif
                                
18e4331f   Ilyes Choubani   general update (f...
2531
                                 endif
bc224f3e   Ilyes Choubani   Update of plottin...
2532

18e4331f   Ilyes Choubani   general update (f...
2533
2534
                                 if ct_spec ne 0 then begin
                                 
67bd858a   Ilyes Choubani   Replication of th...
2535
                                     rms=3.*((*!dustem_data.qext).sigma)(idx_spec)/2.
18e4331f   Ilyes Choubani   general update (f...
2536
                                     ;dustem_plot_mlog,((*!dustem_data.qsed).wav)(idx_spec),-((*!dustem_data.qsed).values)(idx_spec),ppositions=position,charsize=1.15,color='Dodger Blue',psym=16,syms=0.8,xs=1,xr=xr,/nodata,noerase=1,/negative_only,xtickformat='(A1)',xtit='',/xlog,/ylog,yr=yr;,ytickformat='(A1)'
9cb38725   Ilyes Choubani   Fixed tests relat...
2537
                                    ; if ct_spec_hdn_ngtv ne 0 then dustem_plot_mlog,((*!dustem_data.qsed).wav)(idx_spec),((*!dustem_data.qsed).values)(idx_spec),ppositions=position,/overplot,charsize=1.15,color='Dodger Blue',psym=16,syms=0.8,xs=1,xr=xr,noerase=1,/negative_only,xtickformat='(A1)',xtit='',/xlog,/ylog,yr=yr else begin
07372e26   Ilyes Choubani   Corrected huge pl...
2538
                                     dustem_plot_mlog,1/((*!dustem_data.qext).wav)(idx_spec),((*!dustem_data.qext).values)(idx_spec),ppositions=position,charsize=1.15,color='Powder Blue',psym=16,syms=0.8,xs=1,xr=xr,noerase=1,/negative_only,xtickformat='(A1)',xtit='',/xlog,/ylog,yr=yr;,ytickformat='(A1)'
1bc09467   Ilyes Choubani   fixed issue with ...
2539
                                         
9cb38725   Ilyes Choubani   Fixed tests relat...
2540
                                     ;endelse;,ytickformat='(A1)'
07372e26   Ilyes Choubani   Corrected huge pl...
2541
                                     dustem_plot_mlog,1/((*!dustem_data.qext).wav)(idx_spec),((*!dustem_data.qext).values)(idx_spec),ppositions=position,color='Powder Blue',/negative_only,noerase=1,/overplot,rms=rms,xtit='',charsize=1.15,xtickformat='(A1)',xs=1,xr=xr,/xlog,/ylog,yr=yr,ytickformat='(A1)';,psym=16,syms=0.8     
1bc09467   Ilyes Choubani   fixed issue with ...
2542
                                                                              
18e4331f   Ilyes Choubani   general update (f...
2543
2544
2545
2546
                                 endif
                                 
                                 if ct_filt ne 0 then begin
                                     
67bd858a   Ilyes Choubani   Replication of th...
2547
                                     rms=3.*((*!dustem_data.qext).sigma)(idx_filt)/2.
18e4331f   Ilyes Choubani   general update (f...
2548
                                    ; dustem_plot_mlog,((*!dustem_data.qsed).wav)(idx_filt),-1.*((*!dustem_data.qsed).values)(idx_filt),ppositions=position,charsize=1.15,color='Dodger Blue',psym=16,syms=0.8,xs=1,xr=xr,/nodata,noerase=1,/negative_only,xtickformat='(A1)',xtit='',/xlog,/ylog,yr=yr;,ytickformat='(A1)'
9cb38725   Ilyes Choubani   Fixed tests relat...
2549
                                     ;if ct_filt_hdn_ngtv ne 0 then  dustem_plot_mlog,((*!dustem_data.qsed).wav)(idx_filt),((*!dustem_data.qsed).values)(idx_filt),ppositions=position,charsize=1.15,color='Dodger Blue',/overplot,psym=16,syms=0.8,xs=1,xr=xr,noerase=1,/negative_only,xtickformat='(A1)',xtit='',/xlog,/ylog,yr=yr else begin
07372e26   Ilyes Choubani   Corrected huge pl...
2550
                                     dustem_plot_mlog,1/((*!dustem_data.qext).wav)(idx_filt),((*!dustem_data.qext).values)(idx_filt),ppositions=position,charsize=1.15,color='Dodger Blue',psym=16,syms=0.8,xs=1,xr=xr,noerase=1,/negative_only,xtickformat='(A1)',xtit='',/xlog,/ylog,yr=yr;,ytickformat='(A1)'
9cb38725   Ilyes Choubani   Fixed tests relat...
2551
                                     ;endelse ;,ytickformat='(A1)'
18e4331f   Ilyes Choubani   general update (f...
2552
                                     
1bc09467   Ilyes Choubani   fixed issue with ...
2553
                                     dustem_plot_mlog,1/((*!dustem_data.qext).wav)(idx_filt),((*!dustem_data.qext).values)(idx_filt),ppositions=position,color='Dodger Blue',/negative_only,noerase=1,/overplot,rms=rms,xtit='',charsize=1.15,xtickformat='(A1)',xs=1,xr=xr,/xlog,/ylog,yr=yr,ytickformat='(A1)'
18e4331f   Ilyes Choubani   general update (f...
2554
2555
                                         
                                 endif 
c8368c6e   Ilyes Choubani   updating plotting...
2556
                            
c8368c6e   Ilyes Choubani   updating plotting...
2557
                            endif else begin
1bc09467   Ilyes Choubani   fixed issue with ...
2558
2559
2560
                            
                                if ct_spec ne 0 then dustem_plot_mlog,((*!dustem_data.qext).wav)(idx_spec),-((*!dustem_data.qext).values)(idx_spec),ppositions=position,charsize=1.15,/nodata,color='Dodger Blue',psym=16,syms=0.8,xs=1,xr=xr,noerase=1,/negative_only,xtickformat='(A1)',xtit='',/xlog,/ylog,yr=yr;,ytickformat='(A1)'
                                    
18e4331f   Ilyes Choubani   general update (f...
2561
                                
1bc09467   Ilyes Choubani   fixed issue with ...
2562
                                if ct_filt ne 0 and ct_spec eq 0 then  dustem_plot_mlog,((*!dustem_data.qext).wav)(idx_filt),-((*!dustem_data.qext).values)(idx_filt),/nodata,ppositions=position,charsize=1.15,color='Dodger Blue',psym=16,syms=0.8,xs=1,xr=xr,noerase=1,/negative_only,xtickformat='(A1)',xtit='',/xlog,/ylog,yr=yr;,ytickformat='(A1)'
18e4331f   Ilyes Choubani   general update (f...
2563
                                
18e4331f   Ilyes Choubani   general update (f...
2564
                            endelse
5f04fa07   Ilyes Choubani   general update
2565
                            ;stop
18e4331f   Ilyes Choubani   general update (f...
2566
2567
2568
2569
2570
2571
2572
2573
2574
                        endif
                        
                    
                    endelse 
                
                
                
                endelse 
            
67bd858a   Ilyes Choubani   Replication of th...
2575
            endelse ; 
18e4331f   Ilyes Choubani   general update (f...
2576
        
67bd858a   Ilyes Choubani   Replication of th...
2577
        end
18e4331f   Ilyes Choubani   general update (f...
2578
        
67bd858a   Ilyes Choubani   Replication of th...
2579
2580
        'UEXT': begin
        
1bc09467   Ilyes Choubani   fixed issue with ...
2581
2582
2583
2584
            vectw=DINDGEN(1001)*(alog10(1E7) - alog10(1E5))/(1000 - 1L) + alog10(1E5)
            vectw=10^vectw[1:*]
            vectw=[wavs,vectw]
            vectx=vectw*0+1
67bd858a   Ilyes Choubani   Replication of th...
2585
2586
2587
2588
        
            varvar=where((*!dustem_data.uext).values GT 0, testpstv)
            varvar=where((*!dustem_data.uext).values LT 0, testngtv)
            
18e4331f   Ilyes Choubani   general update (f...
2589
            ;stop
67bd858a   Ilyes Choubani   Replication of th...
2590
2591
            idx_filt=where((*!dustem_data.uext).filt_names NE 'SPECTRUM', ct_filt)
            idx_spec=where((*!dustem_data.uext).filt_names EQ 'SPECTRUM' , ct_spec)
f2caf3f1   Ilyes Choubani   Debugging some er...
2592
            
18e4331f   Ilyes Choubani   general update (f...
2593
2594
2595
2596
2597
            ;Plotting of frequency axis
            ;cgaxis, xaxis=1, xlog=1, xs=1, xminor=10;, xticklen=0.05, xrange=((!const.c*1E6/(_extra.(ind_xr)))*1E-9),charsize=1.15,title=textoidl('\nu (GHz)') 
            
            ;stop
            ;Locating all the hidden data points (spectrum+filter)
67bd858a   Ilyes Choubani   Replication of th...
2598
            match2,((*!dustem_data.uext).wav),((*!dustem_show.uext).wav),show_sedpts,fit_sedpts ;only show_sedpts is needed
18e4331f   Ilyes Choubani   general update (f...
2599
2600
            idx_rmv_sed=where(show_sedpts eq -1, ct_hdnpts) ; indices of the points to hide
            
67bd858a   Ilyes Choubani   Replication of th...
2601
            
18e4331f   Ilyes Choubani   general update (f...
2602
2603
2604
            ;#1) get the plotting keywords (pertaining to each data set) @here when the _extra structure is ready
            
            if keyword_set(nodata) then begin ;when the data is not present
f2caf3f1   Ilyes Choubani   Debugging some er...
2605
                
18e4331f   Ilyes Choubani   general update (f...
2606
2607
                if keyword_set(norm) then begin ;normalized plot
                    
f2caf3f1   Ilyes Choubani   Debugging some er...
2608
                    xtit=textoidl('1/\lambda (\mum^{-1})')
18e4331f   Ilyes Choubani   general update (f...
2609
                    if !run_pol then xtit = ''
1bc09467   Ilyes Choubani   fixed issue with ...
2610
                    cgplot,1/vectw,vectx,/xlog,/ys,xs=1,pos=position,noerase=1,xtickformat='(A1)',color='Black',xr=xr,xtit=xtit,yr=[0.0,2.0],yticks=2,ymino=2,xticklen=0.1,ytickformat='(F6.2)',charsize=1.0
18e4331f   Ilyes Choubani   general update (f...
2611
2612
2613
2614
2615
2616
                    xyouts,pospltxt[0],pospltxt[1],textoidl('norm'),color=0,/normal,charsize=1.1                        
                
                endif else begin ;normal plot
                    
                    cgplot,wavs,wavs,/nodata,/ylog,/xlog,/ys,xs=1,pos=position,noerase=1,charsize=1.15,xtickformat='(A1)',color='Powder Blue',xr=xr,xtit='',yr=yr,psym=8,syms=0.8  
                    ;cgaxis, xaxis=1 ,xlog=1 ,xrange=((!const.c*1E6/xr)*1E-9),charsize=1.15,title=textoidl('\nu (GHz)'),xticklen=0.05,xminor=10
94c4dffa   Ilyes Choubani   update + fixes fo...
2617
                    xyouts,pospltxt[0],pospltxt[1],textoidl('\tau_{UEXT}'),color=0,/normal,charsize=1.3;,charthick=2.0
18e4331f   Ilyes Choubani   general update (f...
2618
2619
2620
2621
2622
2623
2624
2625
2626
2627
2628
2629
2630
                  
                endelse  
                
            
            endif else begin ;when the data is present 
                
                if keyword_set(norm) then begin 
                    
                    if keyword_set(refresh) then begin ;The data points in the plot that are being refreshed 
                        
                        ;MAJOR LOOP OVER THE SING??? - YES BECAUSE YOU NEED TO KNOW WHICH ONE IS THE 
                
                        IF ct_spec NE 0 THEN BEGIN
f2caf3f1   Ilyes Choubani   Debugging some er...
2631
                            
67bd858a   Ilyes Choubani   Replication of th...
2632
                            xx=((*!dustem_data.uext).wav)[idx_spec]
5f04fa07   Ilyes Choubani   general update
2633
                            yy=dustem_interp[idx_spec]
67bd858a   Ilyes Choubani   Replication of th...
2634
                            rms=3.*((*!dustem_data.uext).sigma)(idx_spec)/2.
f2caf3f1   Ilyes Choubani   Debugging some er...
2635
2636
2637
2638
2639
2640
                            
                            indzero = where(yy NE 0, ct_zero)
                            If ct_zero NE 0 THEN BEGIN
                                cgoplot,(1/xx)[indzero],(((*!dustem_data.uext).values)(idx_spec))[indzero]/yy[indzero],pos=position,psym=16,color='Powder Blue',syms=0.8,noerase=1 
                                cgerrplot,(1/((*!dustem_data.uext).wav)(idx_spec))[indzero],((((*!dustem_data.uext).values)[idx_spec])[indzero]-rms[indzero])/yy[indzero],((((*!dustem_data.uext).values)[idx_spec])[indzero]+rms[indzero])/yy[indzero],color='Powder Blue'
                            ENDIF
18e4331f   Ilyes Choubani   general update (f...
2641
2642
2643
2644
                        ENDIF
                        
                        IF ct_filt NE 0 THEN BEGIN
                            ;stop
67bd858a   Ilyes Choubani   Replication of th...
2645
                            xx=((*!dustem_data.uext).wav)[idx_filt]
5f04fa07   Ilyes Choubani   general update
2646
                            yy=dustem_interp[idx_filt]
67bd858a   Ilyes Choubani   Replication of th...
2647
                            rms=3.*((*!dustem_data.uext).sigma)(idx_filt)/2. 
f2caf3f1   Ilyes Choubani   Debugging some er...
2648
2649
2650
2651
2652
                            indzero = where(yy NE 0, ct_zero)
                            IF ct_zero NE 0 THEN BEGIN
                                cgoplot,(1/xx)[indzero],(((*!dustem_data.uext).values)(idx_filt))[indzero]/yy[indzero],pos=position,psym=16,color='Dodger Blue',syms=0.8,noerase=1 
                                cgerrplot,(1/((*!dustem_data.uext).wav)(idx_filt))[indzero],((((*!dustem_data.uext).values)[idx_filt])[indzero]-rms[indzero])/yy[indzero],((((*!dustem_data.uext).values)[idx_filt])[indzero]+rms[indzero])/yy[indzero],color='Dodger Blue' 
                            ENDIF
18e4331f   Ilyes Choubani   general update (f...
2653
2654
2655
2656
2657
                        ENDIF
      
                        
                    endif else begin ;The data points in the plot that remain unchanged
                        ;stop
1bc09467   Ilyes Choubani   fixed issue with ...
2658
                        
f2caf3f1   Ilyes Choubani   Debugging some er...
2659
                        xtit=textoidl('1/\lambda (\mum^{-1})')
1355825c   Ilyes Choubani   General update
2660
                        ;if !run_pol then xtit = ''
afde94a3   Ilyes Choubani   general update
2661
                        cgplot,1/vectw,vectx,/xlog,/ys,xs=1,pos=position,noerase=1,color='Black',xr=xr,xtit=xtit,yr=[0.0,2.0],yticks=2,ymino=2,xticklen=0.1,ytickformat='(F6.2)',charsize=1.0
67bd858a   Ilyes Choubani   Replication of th...
2662
                        xyouts,pospltxt[0],pospltxt[1],textoidl('norm'),color=0,/normal,charsize=1.1
18e4331f   Ilyes Choubani   general update (f...
2663
2664
2665
2666
                    
                    endelse
                    
                
67bd858a   Ilyes Choubani   Replication of th...
2667
                endif else begin ; normal plot - STOPPED HERE FOR QSED
18e4331f   Ilyes Choubani   general update (f...
2668
2669
                              
                    if keyword_set(refresh) then begin ;The data points in the plot are being refreshed
53548c91   Ilyes Choubani   Display of frozen...
2670
                        
18e4331f   Ilyes Choubani   general update (f...
2671
2672
                        if keyword_set(positive_only) then begin
     
2df3360b   Ilyes Choubani   Correcting error:...
2673
                            if testpstv ne 0 then begin
f2caf3f1   Ilyes Choubani   Debugging some er...
2674
                                
18e4331f   Ilyes Choubani   general update (f...
2675
                                FOR i=0L,Ngrains-1 DO BEGIN
07372e26   Ilyes Choubani   Corrected huge pl...
2676
2677
2678
                                
                                    vecto = transpose(((st.polext.(1))[i,*]+(st.polext.(2))[i,*]))
                                    vecte = transpose(((st.ext.(1))[i,*]+(st.ext.(2))[i,*]))
5f04fa07   Ilyes Choubani   general update
2679
                                    
07372e26   Ilyes Choubani   Corrected huge pl...
2680
                                    testneq = where( vecto ne 0,countneq)
67bd858a   Ilyes Choubani   Replication of th...
2681
                                    ;stop
5f04fa07   Ilyes Choubani   general update
2682
                                    if countneq ne 0 then begin 
07372e26   Ilyes Choubani   Corrected huge pl...
2683
                                        vecfin = vecto*0.0 ;em_tot can be used here right? 
67bd858a   Ilyes Choubani   Replication of th...
2684
                                        ;stop
07372e26   Ilyes Choubani   Corrected huge pl...
2685
                                        vecfin[testneq] = (vecto[testneq])/vecte[testneq];extra_spec[testneq];(st.sed.em_tot)[testneq];(st.sed.(i+1))[testneq];*fact;(st.sed.(i+1))[testneq]
67bd858a   Ilyes Choubani   Replication of th...
2686
2687
                                        ;stop
                                        ;polar_ippsi2iqu,st.sed.(i+1)*fact,specqgrain,specugrain,st.polsed.(i+1)*fact/spec,replicate(!dustem_psi,n_elements(spec)) ;temporary solution
07372e26   Ilyes Choubani   Corrected huge pl...
2688
                                        polar_ippsi2iqu,vecte*(*!dustem_HCD)/1.0e21,specqgrain,specugrain,vecfin,replicate(!dustem_psi_ext,n_elements(vecfin)) ;temporary solution
5f04fa07   Ilyes Choubani   general update
2689
                                        
67bd858a   Ilyes Choubani   Replication of th...
2690
                                        ;stop
5f04fa07   Ilyes Choubani   general update
2691
                                        ;dustem_plot_mlog,st.polsed.wav,specqgrain,ppositions=position,/overplot,noerase=1,color=use_cols[i],xr=xr,/xlog 
1bc09467   Ilyes Choubani   fixed issue with ...
2692
                                        dustem_plot_mlog,1/st.polext.wav,specugrain,ppositions=position,/positive_only,/overplot,noerase=1,color=use_cols[i],xr=xr,/xlog,/ylog,ytickformat='(A1)',yr=yr
67bd858a   Ilyes Choubani   Replication of th...
2693
2694
                                        ;stop
                                    endif
5f04fa07   Ilyes Choubani   general update
2695
                                    ;stop
18e4331f   Ilyes Choubani   general update (f...
2696
                                ENDFOR
67bd858a   Ilyes Choubani   Replication of th...
2697
                                
18e4331f   Ilyes Choubani   general update (f...
2698
                                for i=0L,n_plgns-1 do begin
3c479f24   Ilyes Choubani   Allowing to fix p...
2699
2700
                                    
                                    IF isa((*!dustem_plugin).(0).spec) THEN BEGIN
67bd858a   Ilyes Choubani   Replication of th...
2701
2702
                                        IF total(strsplit((*(*!dustem_plugin).(i).scope),'+',/extract) EQ 'ADD_POLEXT') THEN begin
                                         
3c479f24   Ilyes Choubani   Allowing to fix p...
2703
                                            ;dustem_plot_mlog,st.polsed.wav,(*(*!dustem_plugin).(i))[*,1],ppositions=position, /overplot, noerase=1, color=clrs_plgns[i], linestyle=2,xr=xr,/xlog
1bc09467   Ilyes Choubani   fixed issue with ...
2704
                                            dustem_plot_mlog,1/st.polext.wav,(*(*!dustem_plugin).(i).spec)[*,2],ppositions=position,/positive_only,/overplot,noerase=1, color=clrs_plgns[i], linestyle=2 ,xr=xr,/xlog,/ylog,ytickformat='(A1)',yr=yr      
3c479f24   Ilyes Choubani   Allowing to fix p...
2705
                                        ENDIF
18e4331f   Ilyes Choubani   general update (f...
2706
                                    ENDIF
18e4331f   Ilyes Choubani   general update (f...
2707
2708
2709
                                endfor
                                
                                IF ct_spec NE 0 THEN BEGIN
67bd858a   Ilyes Choubani   Replication of th...
2710
                                    xx=((*!dustem_data.uext).wav)[idx_spec]
5f04fa07   Ilyes Choubani   general update
2711
                                    yy=dustem_interp[idx_spec]
18e4331f   Ilyes Choubani   general update (f...
2712
                                    ;dustem_plot_mlog,xx,yy,ppositions=position,/overplot, noerase=1, color='red',psym=7,syms=2,xr=xr,/xlog
1bc09467   Ilyes Choubani   fixed issue with ...
2713
                                    dustem_plot_mlog,1/xx,yy,ppositions=position,/positive_only, /overplot, noerase=1, color='Indian Red',psym=7,syms=2,xr=xr,/xlog,/ylog,ytickformat='(A1)',yr=yr 
18e4331f   Ilyes Choubani   general update (f...
2714
2715
2716
                                ENDIF
                                
                                IF ct_filt NE 0 THEN BEGIN
67bd858a   Ilyes Choubani   Replication of th...
2717
                                    xx=((*!dustem_data.uext).wav)[idx_filt]
5f04fa07   Ilyes Choubani   general update
2718
                                    yy=dustem_interp[idx_filt]
18e4331f   Ilyes Choubani   general update (f...
2719
                                    ;dustem_plot_mlog,xx,yy,ppositions=position, /overplot, noerase=1, color='red',psym=6,syms=2,xr=xr,/xlog
1bc09467   Ilyes Choubani   fixed issue with ...
2720
                                    dustem_plot_mlog,1/xx,yy,ppositions=position,/positive_only, /overplot, noerase=1, color='red',psym=6,syms=2,xr=xr,/xlog,/ylog,ytickformat='(A1)',yr=yr
18e4331f   Ilyes Choubani   general update (f...
2721
2722
                                ENDIF
                                
1bc09467   Ilyes Choubani   fixed issue with ...
2723
                                dustem_plot_mlog,1/st.polext.wav,dustem_spec,ppositions=position,/positive_only,/overplot,noerase=1,xr=xr,/xlog,/ylog,ytickformat='(A1)',yr=yr                                    
18e4331f   Ilyes Choubani   general update (f...
2724
2725
2726
2727
2728
2729
                            
                            endif
                                    
                        
                        endif
                        
67bd858a   Ilyes Choubani   Replication of th...
2730
                        ;stop
18e4331f   Ilyes Choubani   general update (f...
2731
                        if keyword_set(negative_only) then begin
67bd858a   Ilyes Choubani   Replication of th...
2732
                            ;stop     
2df3360b   Ilyes Choubani   Correcting error:...
2733
                            if testngtv ne 0 then begin
c8368c6e   Ilyes Choubani   updating plotting...
2734
                            
f2caf3f1   Ilyes Choubani   Debugging some er...
2735
                                    
18e4331f   Ilyes Choubani   general update (f...
2736
2737
                                ;Plotting of the spectra of the dust species
                                FOR i=0L,Ngrains-1 DO BEGIN
07372e26   Ilyes Choubani   Corrected huge pl...
2738
2739
2740
                                    vecto = transpose(((st.polext.(1))[i,*]+(st.polext.(2))[i,*]))
                                    vecte = transpose(((st.ext.(1))[i,*]+(st.ext.(2))[i,*]))
                                    testneq = where( vecto ne 0,countneq)
67bd858a   Ilyes Choubani   Replication of th...
2741
2742
                                    ;stop
                                    if countneq ne 0 then begin 
07372e26   Ilyes Choubani   Corrected huge pl...
2743
                                        vecfin = vecto*0.0 ;em_tot can be used here right? 
67bd858a   Ilyes Choubani   Replication of th...
2744
                                        ;stop
07372e26   Ilyes Choubani   Corrected huge pl...
2745
                                        vecfin[testneq] = vecto[testneq]/vecte[testneq];extra_spec[testneq];(st.sed.em_tot)[testneq];(st.sed.(i+1))[testneq];*fact;(st.sed.(i+1))[testneq] 
67bd858a   Ilyes Choubani   Replication of th...
2746
                                        ;stop    
07372e26   Ilyes Choubani   Corrected huge pl...
2747
                                        polar_ippsi2iqu,vecte*(*!dustem_HCD)/1.0e21,specqgrain,specugrain,vecfin,replicate(!dustem_psi_ext,n_elements(vecfin)) ;temporary solution
67bd858a   Ilyes Choubani   Replication of th...
2748
                                        ;stop
5f04fa07   Ilyes Choubani   general update
2749
                                        ;dustem_plot_mlog,st.polsed.wav,specqgrain,ppositions=position,/overplot,noerase=1,color=use_cols[i],xr=xr,/xlog 
1bc09467   Ilyes Choubani   fixed issue with ...
2750
                                        dustem_plot_mlog,1/st.polext.wav,specugrain,ppositions=position,/negative_only,/overplot,noerase=1,color=use_cols[i],xr=xr,/xlog,/ylog,ytickformat='(A1)',yr=yr
67bd858a   Ilyes Choubani   Replication of th...
2751
                                    endif 
18e4331f   Ilyes Choubani   general update (f...
2752
2753
                                ENDFOR
                                ;Plotting of the plugins
67bd858a   Ilyes Choubani   Replication of th...
2754
                                for i=0L,n_plgns-1 do begin
3c479f24   Ilyes Choubani   Allowing to fix p...
2755
2756
                                    IF isa((*!dustem_plugin).(0).spec) THEN BEGIN
                                    
67bd858a   Ilyes Choubani   Replication of th...
2757
2758
                                        IF total(strsplit((*(*!dustem_plugin).(i).scope),'+',/extract) EQ 'ADD_POLEXT') THEN begin
     
3c479f24   Ilyes Choubani   Allowing to fix p...
2759
                                            ;dustem_plot_mlog,st.polsed.wav,(*(*!dustem_plugin).(i))[*,1],ppositions=position, /overplot, noerase=1, color=clrs_plgns[i], linestyle=2,xr=xr,/xlog
1bc09467   Ilyes Choubani   fixed issue with ...
2760
                                            dustem_plot_mlog,1/st.polext.wav,(*(*!dustem_plugin).(i).spec)[*,2],ppositions=position,/negative_only,/overplot,noerase=1, color=clrs_plgns[i], linestyle=2 ,xr=xr,/xlog,/ylog,ytickformat='(A1)',yr=yr      
3c479f24   Ilyes Choubani   Allowing to fix p...
2761
                                        ENDIF
67bd858a   Ilyes Choubani   Replication of th...
2762
                                        
18e4331f   Ilyes Choubani   general update (f...
2763
                                    ENDIF
67bd858a   Ilyes Choubani   Replication of th...
2764
                                endfor
18e4331f   Ilyes Choubani   general update (f...
2765
2766
                                ;PLotting of the interpolates corresponding to spectrum and filter points
                                IF ct_spec NE 0 THEN BEGIN
67bd858a   Ilyes Choubani   Replication of th...
2767
                                    xx=((*!dustem_data.uext).wav)[idx_spec]
5f04fa07   Ilyes Choubani   general update
2768
                                    yy=dustem_interp[idx_spec]
18e4331f   Ilyes Choubani   general update (f...
2769
                                    ;dustem_plot_mlog,xx,yy,ppositions=position,/overplot, noerase=1, color='red',psym=7,syms=2,xr=xr,/xlog
1bc09467   Ilyes Choubani   fixed issue with ...
2770
                                    dustem_plot_mlog,1/xx,yy,ppositions=position,/negative_only, /overplot, noerase=1, color='Indian Red',psym=7,syms=2,xr=xr,/xlog,/ylog,ytickformat='(A1)',yr=yr 
18e4331f   Ilyes Choubani   general update (f...
2771
2772
2773
                                ENDIF
                                
                                IF ct_filt NE 0 THEN BEGIN
67bd858a   Ilyes Choubani   Replication of th...
2774
                                    xx=((*!dustem_data.uext).wav)[idx_filt]
5f04fa07   Ilyes Choubani   general update
2775
                                    yy=dustem_interp[idx_filt]
18e4331f   Ilyes Choubani   general update (f...
2776
                                    ;dustem_plot_mlog,xx,yy,ppositions=position, /overplot, noerase=1, color='red',psym=6,syms=2,xr=xr,/xlog
1bc09467   Ilyes Choubani   fixed issue with ...
2777
                                    dustem_plot_mlog,1/xx,yy,ppositions=position,/negative_only, /overplot, noerase=1, color='red',psym=6,syms=2,xr=xr,/xlog,/ylog,ytickformat='(A1)',yr=yr
18e4331f   Ilyes Choubani   general update (f...
2778
                                ENDIF
18e4331f   Ilyes Choubani   general update (f...
2779
                                ;Plotting of the total dust emission spectrum
1bc09467   Ilyes Choubani   fixed issue with ...
2780
                                dustem_plot_mlog,1/st.polext.wav,dustem_spec,ppositions=position,/negative_only,/overplot,noerase=1,xr=xr,/xlog,/ylog,ytickformat='(A1)',yr=yr                                    
bc224f3e   Ilyes Choubani   Update of plottin...
2781
                            
18e4331f   Ilyes Choubani   general update (f...
2782
2783
                            endif
                                    
bc224f3e   Ilyes Choubani   Update of plottin...
2784
2785
                        
                        endif
18e4331f   Ilyes Choubani   general update (f...
2786
2787
                                                   
                      ;stop             
67bd858a   Ilyes Choubani   Replication of th...
2788
                    endif else begin ;The data points in the plot that remain unchanged.; DO NOT USE AN ELSE HERE. 
bc224f3e   Ilyes Choubani   Update of plottin...
2789
                        ;stop
18e4331f   Ilyes Choubani   general update (f...
2790
                        ;cgaxis, xaxis=1,xlog=1, xs=1,charsize=1.5,xtickformat='(A1)'
94c4dffa   Ilyes Choubani   update + fixes fo...
2791
                        xyouts,pospltxt[0],pospltxt[1],textoidl('\tau_{UEXT}'),color=0,/normal,charsize=1.3;,charthick=2.0  
2df3360b   Ilyes Choubani   Correcting error:...
2792
                        ;if ct_hdnpts ne 0 then begin ;Hidden data points are present 
67bd858a   Ilyes Choubani   Replication of th...
2793
                            
2df3360b   Ilyes Choubani   Correcting error:...
2794
2795
                        ;Locating the hidden spectrum and filter data points     
                        ;SADLY I STILL DON'T HAVE A SOLUTION FOR THE PLOTTING OF NULL VALUES.                                   
67bd858a   Ilyes Choubani   Replication of th...
2796
2797
                        ;idx_filt_hdn = where(((*!dustem_show.qsed).filt_names)(idx_rmv_sed) NE 'SPECTRUM',ct_filt_hdn)
                        ;idx_spec_hdn = where(((*!dustem_show.qsed).filt_names)(idx_rmv_sed) EQ 'SPECTRUM',ct_spec_hdn)
9cb38725   Ilyes Choubani   Fixed tests relat...
2798
                        if ct_hdnpts then begin
67bd858a   Ilyes Choubani   Replication of th...
2799
2800
2801
2802
                            idx_filt_hdn_pstv = where(((*!dustem_show.uext).filt_names)(idx_rmv_sed) NE 'SPECTRUM' and ((*!dustem_show.uext).values)(idx_rmv_sed) gt 0,ct_filt_hdn_pstv)
                            idx_spec_hdn_pstv = where(((*!dustem_show.uext).filt_names)(idx_rmv_sed) EQ 'SPECTRUM' and ((*!dustem_show.uext).values)(idx_rmv_sed) gt 0,ct_spec_hdn_pstv)
                            idx_filt_hdn_ngtv = where(((*!dustem_show.uext).filt_names)(idx_rmv_sed) NE 'SPECTRUM' and ((*!dustem_show.uext).values)(idx_rmv_sed) lt 0,ct_filt_hdn_ngtv)
                            idx_spec_hdn_ngtv = where(((*!dustem_show.uext).filt_names)(idx_rmv_sed) EQ 'SPECTRUM' and ((*!dustem_show.uext).values)(idx_rmv_sed) lt 0,ct_spec_hdn_ngtv)
9cb38725   Ilyes Choubani   Fixed tests relat...
2803
                        endif
67bd858a   Ilyes Choubani   Replication of th...
2804
                        
18e4331f   Ilyes Choubani   general update (f...
2805
2806
                        
                        if keyword_set(positive_only) then begin
f2caf3f1   Ilyes Choubani   Debugging some er...
2807
                            
2df3360b   Ilyes Choubani   Correcting error:...
2808
                            if testpstv ne 0 then begin
f2caf3f1   Ilyes Choubani   Debugging some er...
2809
                            
67bd858a   Ilyes Choubani   Replication of th...
2810
                                ;plotsym, 0
18e4331f   Ilyes Choubani   general update (f...
2811
                                
9cb38725   Ilyes Choubani   Fixed tests relat...
2812
                                if ct_hdnpts then begin
18e4331f   Ilyes Choubani   general update (f...
2813
                                
9cb38725   Ilyes Choubani   Fixed tests relat...
2814
                                    if ct_spec_hdn_pstv ne 0 then begin
67bd858a   Ilyes Choubani   Replication of th...
2815
2816
2817
                                        xx = (((*!dustem_show.uext).wav)[idx_rmv_sed])(idx_spec_hdn_pstv)
                                        yy = (((*!dustem_show.uext).values)[idx_rmv_sed])(idx_spec_hdn_pstv)
                                        rms=3.*(((*!dustem_show.uext).sigma)[idx_rmv_sed])(idx_spec_hdn_pstv)/2.
9cb38725   Ilyes Choubani   Fixed tests relat...
2818
                                        
1bc09467   Ilyes Choubani   fixed issue with ...
2819
2820
                                        dustem_plot_mlog,1/xx,yy,ppositions=position,/positive_only,xs=1,noerase=1,charsize=1.15,xtickformat='(A1)',xr=xr,color='Black',psym=16,syms=0.8,/xlog,/ylog,yr=yr
                                        dustem_plot_mlog,1/xx,yy,ppositions=position,/positive_only,noerase=1,color='Black',/overplot,rms=rms,yr=yr,xtickformat='(A1)',xr=xr,xs=1,/xlog,/ylog;,psym=8,syms=0.8
18e4331f   Ilyes Choubani   general update (f...
2821
                                    
9cb38725   Ilyes Choubani   Fixed tests relat...
2822
2823
2824
                                    endif 
                                    
                                    if ct_filt_hdn_pstv ne 0 then begin
67bd858a   Ilyes Choubani   Replication of th...
2825
2826
2827
2828
                                    
                                        xx = (((*!dustem_show.uext).wav)[idx_rmv_sed])(idx_filt_hdn_pstv)
                                        yy = (((*!dustem_show.uext).values)[idx_rmv_sed])(idx_filt_hdn_pstv)
                                        rms=3.*(((*!dustem_show.uext).sigma)[idx_rmv_sed])(idx_filt_hdn_pstv)/2.
9cb38725   Ilyes Choubani   Fixed tests relat...
2829
                                        
1bc09467   Ilyes Choubani   fixed issue with ...
2830
2831
                                        dustem_plot_mlog,1/xx,yy,ppositions=position,/positive_only,xs=1,noerase=1,charsize=1.15,xtickformat='(A1)',xr=xr,color='Black',psym=16,syms=0.8,/xlog,/ylog,yr=yr   
                                        dustem_plot_mlog,1/xx,yy,ppositions=position,/positive_only,xs=1,noerase=1,color='Black',/overplot,rms=rms,xr=xr,yr=yr,xtickformat='(A1)',/xlog,/ylog;,psym=8,syms=0.8
9cb38725   Ilyes Choubani   Fixed tests relat...
2832
2833
                                    
                                    endif
67bd858a   Ilyes Choubani   Replication of th...
2834
2835
2836
2837
2838
2839
2840
2841
2842
                                    
                                endif
                                
                                
                                
                                if ct_spec ne 0 then begin
                                
                                    rms=3.*((*!dustem_data.uext).sigma)(idx_spec)/2.
                                    ;dustem_plot_mlog,((*!dustem_data.qsed).wav)(idx_spec),-((*!dustem_data.qsed).values)(idx_spec),ppositions=position,charsize=1.15,color='Dodger Blue',psym=16,syms=0.8,xs=1,xr=xr,/nodata,noerase=1,/positive_only,xtickformat='(A1)',xtit='',/xlog,/ylog,yr=yr;,ytickformat='(A1)'
e9bb0ce2   Ilyes Choubani   Correcting small ...
2843
2844
                                    dustem_plot_mlog,1/((*!dustem_data.uext).wav)(idx_spec),((*!dustem_data.uext).values)(idx_spec),ppositions=position,charsize=1.15,color='Powder Blue',psym=16,syms=0.8,xs=1,xr=xr,noerase=1,/positive_only,xtickformat='(A1)',xtit='',/xlog,/ylog,yr=yr;,ytickformat='(A1)'
                                    dustem_plot_mlog,1/((*!dustem_data.uext).wav)(idx_spec),((*!dustem_data.uext).values)(idx_spec),ppositions=position,color='Powder Blue',/positive_only,noerase=1,/overplot,rms=rms,xtit='',charsize=1.15,xtickformat='(A1)',xs=1,psym=16,syms=0.8,xr=xr,/xlog,/ylog,yr=yr,ytickformat='(A1)'     
67bd858a   Ilyes Choubani   Replication of th...
2845
2846
2847
2848
2849
2850
2851
                                 
                                endif
                                
                                if ct_filt ne 0 then begin
                                    
                                    rms=3.*((*!dustem_data.uext).sigma)(idx_filt)/2.
                                   ; dustem_plot_mlog,((*!dustem_data.qsed).wav)(idx_filt),-1.*((*!dustem_data.qsed).values)(idx_filt),ppositions=position,charsize=1.15,color='Dodger Blue',psym=16,syms=0.8,xs=1,xr=xr,/nodata,noerase=1,/negative_only,xtickformat='(A1)',xtit='',/xlog,/ylog,yr=yr;,ytickformat='(A1)'
1bc09467   Ilyes Choubani   fixed issue with ...
2852
2853
                                    dustem_plot_mlog,1/((*!dustem_data.uext).wav)(idx_filt),((*!dustem_data.uext).values)(idx_filt),ppositions=position,charsize=1.15,color='Dodger Blue',psym=16,syms=0.8,xs=1,xr=xr,noerase=1,/positive_only,xtickformat='(A1)',xtit='',/xlog,/ylog,yr=yr;,ytickformat='(A1)'
                                    dustem_plot_mlog,1/((*!dustem_data.uext).wav)(idx_filt),((*!dustem_data.uext).values)(idx_filt),ppositions=position,color='Dodger Blue',/positive_only,noerase=1,/overplot,rms=rms,xtit='',charsize=1.15,xtickformat='(A1)',xs=1,psym=16,syms=0.8,xr=xr,/xlog,/ylog,yr=yr,ytickformat='(A1)'
67bd858a   Ilyes Choubani   Replication of th...
2854
2855
                                        
                                endif
2df3360b   Ilyes Choubani   Correcting error:...
2856
                            endif else begin
f2caf3f1   Ilyes Choubani   Debugging some er...
2857
                                
e9bb0ce2   Ilyes Choubani   Correcting small ...
2858
                                if ct_spec ne 0 then dustem_plot_mlog,1/((*!dustem_data.uext).wav)(idx_spec),((*!dustem_data.uext).values)(idx_spec),ppositions=position,charsize=1.15,/nodata,color='Powder Blue',psym=16,syms=0.8,xs=1,xr=xr,noerase=1,/positive_only,xtickformat='(A1)',xtit='',/xlog,/ylog,yr=yr;,ytickformat='(A1)'
18e4331f   Ilyes Choubani   general update (f...
2859
                                    
1bc09467   Ilyes Choubani   fixed issue with ...
2860
                                
07372e26   Ilyes Choubani   Corrected huge pl...
2861
                                if ct_filt ne 0 and ct_spec eq 0 then  dustem_plot_mlog,1/((*!dustem_data.uext).wav)(idx_filt),-((*!dustem_data.uext).values)(idx_filt),/nodata,ppositions=position,charsize=1.15,color='Dodger Blue',psym=16,syms=0.8,xs=1,xr=xr,noerase=1,/positive_only,xtickformat='(A1)',xtit='',/xlog,/ylog,yr=yr;,ytickformat='(A1)'
f2caf3f1   Ilyes Choubani   Debugging some er...
2862
                                   
07372e26   Ilyes Choubani   Corrected huge pl...
2863
                                
67bd858a   Ilyes Choubani   Replication of th...
2864
                            endelse                           
18e4331f   Ilyes Choubani   general update (f...
2865
                        
f2caf3f1   Ilyes Choubani   Debugging some er...
2866
                        
18e4331f   Ilyes Choubani   general update (f...
2867
2868
                        endif 
                        
67bd858a   Ilyes Choubani   Replication of th...
2869
                        
18e4331f   Ilyes Choubani   general update (f...
2870
                        if keyword_set(negative_only) then begin
67bd858a   Ilyes Choubani   Replication of th...
2871
                            
2df3360b   Ilyes Choubani   Correcting error:...
2872
                            if testngtv ne 0 then begin
18e4331f   Ilyes Choubani   general update (f...
2873
                                 
67bd858a   Ilyes Choubani   Replication of th...
2874
                                 ;plotsym, 0
18e4331f   Ilyes Choubani   general update (f...
2875
                                 
9cb38725   Ilyes Choubani   Fixed tests relat...
2876
                                 if ct_hdnpts then begin
18e4331f   Ilyes Choubani   general update (f...
2877
                                 
9cb38725   Ilyes Choubani   Fixed tests relat...
2878
                                     if ct_spec_hdn_ngtv ne 0 then begin
67bd858a   Ilyes Choubani   Replication of th...
2879
2880
2881
                                         xx = (((*!dustem_show.uext).wav)[idx_rmv_sed])(idx_spec_hdn_ngtv)
                                         yy = (((*!dustem_show.uext).values)[idx_rmv_sed])(idx_spec_hdn_ngtv)
                                         rms=3.*(((*!dustem_show.uext).sigma)[idx_rmv_sed])(idx_spec_hdn_ngtv)/2.
9cb38725   Ilyes Choubani   Fixed tests relat...
2882
                                         
1bc09467   Ilyes Choubani   fixed issue with ...
2883
2884
                                         dustem_plot_mlog,1/xx,yy,ppositions=position,/negative_only,xs=1,noerase=1,charsize=1.15,xtickformat='(A1)',xr=xr,color='Black',psym=16,syms=0.8,/xlog,/ylog,yr=yr
                                         dustem_plot_mlog,1/xx,yy,ppositions=position,/negative_only,noerase=1,color='Black',/overplot,rms=rms,yr=yr,xtickformat='(A1)',xr=xr,xs=1,/xlog,/ylog;,psym=8,syms=0.8
18e4331f   Ilyes Choubani   general update (f...
2885
                                     
9cb38725   Ilyes Choubani   Fixed tests relat...
2886
                                     endif 
18e4331f   Ilyes Choubani   general update (f...
2887
                                     
9cb38725   Ilyes Choubani   Fixed tests relat...
2888
2889
                                     if ct_filt_hdn_ngtv ne 0 then begin
                                     
67bd858a   Ilyes Choubani   Replication of th...
2890
2891
2892
                                         xx = (((*!dustem_show.uext).wav)[idx_rmv_sed])(idx_filt_hdn_ngtv)
                                         yy = (((*!dustem_show.uext).values)[idx_rmv_sed])(idx_filt_hdn_ngtv)
                                         rms=3.*(((*!dustem_show.uext).sigma)[idx_rmv_sed])(idx_filt_hdn_ngtv)/2.
9cb38725   Ilyes Choubani   Fixed tests relat...
2893
                                         
1bc09467   Ilyes Choubani   fixed issue with ...
2894
2895
                                         dustem_plot_mlog,1/xx,yy,ppositions=position,/negative_only,xs=1,noerase=1,charsize=1.15,xtickformat='(A1)',xr=xr,color='Black',psym=16,syms=0.8,/xlog,/ylog,yr=yr   
                                         dustem_plot_mlog,1/xx,yy,ppositions=position,/negative_only,xs=1,noerase=1,color='Black',/overplot,rms=rms,xr=xr,yr=yr,xtickformat='(A1)',/xlog,/ylog;,psym=8,syms=0.8
9cb38725   Ilyes Choubani   Fixed tests relat...
2896
2897
                                     
                                     endif
67bd858a   Ilyes Choubani   Replication of th...
2898
2899
                                
                                 endif
18e4331f   Ilyes Choubani   general update (f...
2900

67bd858a   Ilyes Choubani   Replication of th...
2901
                                 if ct_spec ne 0 then begin
f2caf3f1   Ilyes Choubani   Debugging some er...
2902
                                     
67bd858a   Ilyes Choubani   Replication of th...
2903
2904
2905
                                     rms=3.*((*!dustem_data.uext).sigma)(idx_spec)/2.
                                     ;dustem_plot_mlog,((*!dustem_data.qsed).wav)(idx_spec),-((*!dustem_data.qsed).values)(idx_spec),ppositions=position,charsize=1.15,color='Dodger Blue',psym=16,syms=0.8,xs=1,xr=xr,/nodata,noerase=1,/negative_only,xtickformat='(A1)',xtit='',/xlog,/ylog,yr=yr;,ytickformat='(A1)'
                                    ; if ct_spec_hdn_ngtv ne 0 then dustem_plot_mlog,((*!dustem_data.qsed).wav)(idx_spec),((*!dustem_data.qsed).values)(idx_spec),ppositions=position,/overplot,charsize=1.15,color='Dodger Blue',psym=16,syms=0.8,xs=1,xr=xr,noerase=1,/negative_only,xtickformat='(A1)',xtit='',/xlog,/ylog,yr=yr else begin
e9bb0ce2   Ilyes Choubani   Correcting small ...
2906
                                     dustem_plot_mlog,1/((*!dustem_data.uext).wav)(idx_spec),((*!dustem_data.uext).values)(idx_spec),ppositions=position,charsize=1.15,color='Powder Blue',psym=16,syms=0.8,xs=1,xr=xr,noerase=1,/negative_only,xtickformat='(A1)',xtit='',/xlog,/ylog,yr=yr;,ytickformat='(A1)'
67bd858a   Ilyes Choubani   Replication of th...
2907
                                     ;endelse;,ytickformat='(A1)'
e9bb0ce2   Ilyes Choubani   Correcting small ...
2908
                                     dustem_plot_mlog,1/((*!dustem_data.uext).wav)(idx_spec),((*!dustem_data.uext).values)(idx_spec),ppositions=position,color='Powder Blue',/negative_only,noerase=1,/overplot,rms=rms,xtit='',charsize=1.15,xtickformat='(A1)',xs=1,xr=xr,/xlog,/ylog,yr=yr,ytickformat='(A1)';,psym=16,syms=0.8     
67bd858a   Ilyes Choubani   Replication of th...
2909
2910
2911
2912
2913
2914
2915
2916
                                  
                                 endif
                                 
                                 if ct_filt ne 0 then begin
                                     
                                     rms=3.*((*!dustem_data.uext).sigma)(idx_filt)/2.
                                    ; dustem_plot_mlog,((*!dustem_data.qsed).wav)(idx_filt),-1.*((*!dustem_data.qsed).values)(idx_filt),ppositions=position,charsize=1.15,color='Dodger Blue',psym=16,syms=0.8,xs=1,xr=xr,/nodata,noerase=1,/negative_only,xtickformat='(A1)',xtit='',/xlog,/ylog,yr=yr;,ytickformat='(A1)'
                                     ;if ct_filt_hdn_ngtv ne 0 then  dustem_plot_mlog,((*!dustem_data.qsed).wav)(idx_filt),((*!dustem_data.qsed).values)(idx_filt),ppositions=position,charsize=1.15,color='Dodger Blue',/overplot,psym=16,syms=0.8,xs=1,xr=xr,noerase=1,/negative_only,xtickformat='(A1)',xtit='',/xlog,/ylog,yr=yr else begin
1bc09467   Ilyes Choubani   fixed issue with ...
2917
                                         dustem_plot_mlog,1/((*!dustem_data.uext).wav)(idx_filt),((*!dustem_data.uext).values)(idx_filt),ppositions=position,charsize=1.15,color='Dodger Blue',psym=16,syms=0.8,xs=1,xr=xr,noerase=1,/negative_only,xtickformat='(A1)',xtit='',/xlog,/ylog,yr=yr;,ytickformat='(A1)'
67bd858a   Ilyes Choubani   Replication of th...
2918
2919
                                     ;endelse ;,ytickformat='(A1)'
                                     
1bc09467   Ilyes Choubani   fixed issue with ...
2920
                                     dustem_plot_mlog,1/((*!dustem_data.uext).wav)(idx_filt),((*!dustem_data.uext).values)(idx_filt),ppositions=position,color='Dodger Blue',/negative_only,noerase=1,/overplot,rms=rms,xtit='',charsize=1.15,xtickformat='(A1)',xs=1,xr=xr,/xlog,/ylog,yr=yr,ytickformat='(A1)'
67bd858a   Ilyes Choubani   Replication of th...
2921
                                         
9cb38725   Ilyes Choubani   Fixed tests relat...
2922
                                 endif 
bc224f3e   Ilyes Choubani   Update of plottin...
2923
                            
2df3360b   Ilyes Choubani   Correcting error:...
2924
                            endif else begin
f2caf3f1   Ilyes Choubani   Debugging some er...
2925
                                
e9bb0ce2   Ilyes Choubani   Correcting small ...
2926
                                if ct_spec ne 0 then dustem_plot_mlog,1/((*!dustem_data.uext).wav)(idx_spec),-((*!dustem_data.uext).values)(idx_spec),ppositions=position,charsize=1.15,/nodata,color='Powder Blue',psym=16,syms=0.8,xs=1,xr=xr,noerase=1,/negative_only,xtickformat='(A1)',xtit='',/xlog,/ylog,yr=yr;,ytickformat='(A1)'
1bc09467   Ilyes Choubani   fixed issue with ...
2927
                                    
18e4331f   Ilyes Choubani   general update (f...
2928
                                
07372e26   Ilyes Choubani   Corrected huge pl...
2929
2930
                                if ct_filt ne 0 and ct_spec eq 0 then  dustem_plot_mlog,1/((*!dustem_data.uext).wav)(idx_filt),-((*!dustem_data.uext).values)(idx_filt),/nodata,ppositions=position,charsize=1.15,color='Dodger Blue',psym=16,syms=0.8,xs=1,xr=xr,noerase=1,/negative_only,xtickformat='(A1)',xtit='',/xlog,/ylog,yr=yr;,ytickformat='(A1)'
                                
f2caf3f1   Ilyes Choubani   Debugging some er...
2931
                        
2df3360b   Ilyes Choubani   Correcting error:...
2932
                            endelse
5f04fa07   Ilyes Choubani   general update
2933
                            ;stop
18e4331f   Ilyes Choubani   general update (f...
2934
                        endif
bc224f3e   Ilyes Choubani   Update of plottin...
2935
2936
2937
2938
                        
                    
                    endelse 
                
bc224f3e   Ilyes Choubani   Update of plottin...
2939
2940
                endelse 
            
67bd858a   Ilyes Choubani   Replication of th...
2941
            endelse 
b5314324   Ilyes Choubani   updating the plot...
2942
2943
        
        end
5f04fa07   Ilyes Choubani   general update
2944
2945
        
        'PARAMETERS':begin ;needs the followingd data (errors+res+formats)
e9bb0ce2   Ilyes Choubani   Correcting small ...
2946
         
5f04fa07   Ilyes Choubani   general update
2947
2948
2949
2950
2951
            p_dim = extra_spec
            ;stop
            Npar=n_elements(p_dim)
            
            if keyword_set(refresh) then begin ;data in the parameter window that is being refreshed
53548c91   Ilyes Choubani   Display of frozen...
2952
    
5f04fa07   Ilyes Choubani   general update
2953
                k=0    
5f04fa07   Ilyes Choubani   general update
2954
                
53548c91   Ilyes Choubani   Display of frozen...
2955
2956
2957
2958
2959
2960
2961
                    
                IF isa((*!dustem_fit).fixed_param_descs) THEN BEGIN
                    
                    Nfpar = n_elements((*(*!dustem_fit).fixed_param_descs))
                    res = (*(*!dustem_fit).fixed_param_init_values)
                    
                    FOR i=0L,Nfpar-1 DO BEGIN
5f04fa07   Ilyes Choubani   general update
2962
                        
53548c91   Ilyes Choubani   Display of frozen...
2963
2964
2965
2966
2967
2968
2969
                        parameter_description = (*(*!dustem_fit).fixed_param_descs)[i]     
                        parameter_type = dustem_parameter_description2type(parameter_description,string_name=string_name)
                        ;Not sure about the wrapper data type that is mentioned in this procedure
                        IF parameter_type NE 'PLUGIN' THEN BEGIN                       
                            yypos = 0.8 - k*0.09
                            k+=1
                        ENDIF 
5f04fa07   Ilyes Choubani   general update
2970
                        
53548c91   Ilyes Choubani   Display of frozen...
2971
2972
2973
2974
2975
2976
2977
2978
2979
2980
2981
2982
2983
2984
2985
2986
2987
                    ENDFOR  
                                
                     
                ENDIF
                
                
                prms_dscs = (*(*!dustem_fit).param_descs)
                prms_tps = strarr(n_elements(prms_dscs))
                
                for i=0L,n_elements(prms_dscs)-1 do begin
                    prms_tps[i] = dustem_parameter_description2type(prms_dscs[i])
                endfor
                
                testprms = where(prms_tps ne 'PLUGIN', ct_data)
                if ct_data ne 0 then begin
                
                    if ~isa(yypos) then yypos = 0.8 else yypos-=0.26 ;not sure about this
fcb6eade   Ilyes Choubani   general update - ...
2988
2989
                    
                    
53548c91   Ilyes Choubani   Display of frozen...
2990
2991
2992
2993
2994
                    res = dustem_interp
                    errors = dustem_spec
                    yypostmp = yypos
                    k=0
                    FOR i=0L,Npar-1 DO BEGIN   
fcb6eade   Ilyes Choubani   general update - ...
2995
                      
53548c91   Ilyes Choubani   Display of frozen...
2996
2997
2998
2999
3000
                      parameter_description = (*(*!dustem_fit).param_descs)[i]
                      parameter_type = dustem_parameter_description2type(parameter_description,string_name=string_name)
                      testpop = STRUPCASE(strmid(strtrim(parameter_description,2),3,1,/reverse_offset)) EQ 'O'
                          
                        IF parameter_type EQ 'FORTRAN' and  testpop then begin
fcb6eade   Ilyes Choubani   general update - ...
3001
                          
53548c91   Ilyes Choubani   Display of frozen...
3002
3003
3004
3005
3006
3007
3008
3009
3010
3011
3012
3013
3014
3015
3016
3017
3018
3019
3020
3021
3022
3023
3024
3025
                            indpop=fix(STRUPCASE(strmid(strtrim(parameter_description,2),12,1,/reverse_offset)))
                            string_name=(((*!dustem_params). GRAINS).grain_type)[indpop]
                            
                            ;choosing a step of 0.03 in norm coordinates 
                            yypos = yypostmp - k*0.09 
                            xxpos = 0.0
                            
                            ;original line
                            ;str=string(string_name+' = ',format=frmt0)+string(res[i],format=frmt1)
                            
                            str = strtrim(string(string_name+' = ',format=frmt0),2)+ string(res[i],format=frmt1) + textoidl(' \pm ') +string(errors(i),format=frmt1)
                            ;will this work? 
                            cgtext, xxpos, yypos, str, charsize=-1, width=thiswidth, /normal
                            xxpos = (1-thiswidth)/2
                            str = strtrim(string(string_name+' = ',format=frmt0),2)
                            cgtext, xxpos, yypos, str, charsize=-1, width=thiswidth, /normal
                            xxpos+= thiswidth 
                            
                            str= string(res[i],format=frmt1) + textoidl(' \pm ') + string(errors(i),format=frmt1)
                            ;stop
                            xyouts,xxpos,yypos,str,color=0,/normal,charsize=1.
                            k+=1            
                            
                        ENDIF
e9bb0ce2   Ilyes Choubani   Correcting small ...
3026
                        
fcb6eade   Ilyes Choubani   general update - ...
3027
                        
53548c91   Ilyes Choubani   Display of frozen...
3028
3029
3030
3031
3032
3033
3034
3035
3036
3037
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3039
3040
3041
3042
3043
3044
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3046
3047
3048
3049
3050
3051
3052
3053
                        IF parameter_type EQ 'FORTRAN' and ~testpop then begin
                          
                            ;indpop=fix(STRUPCASE(strmid(strtrim(parameter_description,2),12,1,/reverse_offset)))
                            ;string_name=(((*!dustem_params). GRAINS).grain_type)[indpop]
                              
                            
                            yypos = yypostmp - k*0.09 
                            xxpos = 0.0
                            
                            ;original line
                            ;str=string(string_name+' = ',format=frmt0)+string(res[i],format=frmt1)
                            
                            str = strtrim(string(string_name+' = ',format=frmt0),2)+ string(res[i],format=frmt1) + textoidl(' \pm ') +string(errors(i),format=frmt1)
                            ;will this work? 
                            cgtext, xxpos, yypos, str, charsize=-1, width=thiswidth, /normal
                            xxpos = (1-thiswidth)/2
                            str = strtrim(string(string_name+' = ',format=frmt0),2)
                            cgtext, xxpos, yypos, str, charsize=-1, width=thiswidth, /normal
                            xxpos+= thiswidth 
                            
                            str= string(res[i],format=frmt1) + textoidl(' \pm ') + string(errors(i),format=frmt1)
                            ;stop
                            xyouts,xxpos,yypos,str,color=0,/normal,charsize=1.
                            k+=1            
                            
                        ENDIF
fcb6eade   Ilyes Choubani   general update - ...
3054
                        
fcb6eade   Ilyes Choubani   general update - ...
3055
                        
53548c91   Ilyes Choubani   Display of frozen...
3056
                    ENDFOR        
fcb6eade   Ilyes Choubani   general update - ...
3057
                    
53548c91   Ilyes Choubani   Display of frozen...
3058
                ENDIF                        
5f04fa07   Ilyes Choubani   general update
3059
3060
                
            endif else begin ;data in the parameter window that is unchanged 
e9bb0ce2   Ilyes Choubani   Correcting small ...
3061
                
e9bb0ce2   Ilyes Choubani   Correcting small ...
3062
3063
3064
                ;Trying to gather information on the fixed parameters
                ;Two pointers assuming one is sufficient for the following condition (unless dustem_init_fixed_parameters)
                ;WILL THIS WORK?
53548c91   Ilyes Choubani   Display of frozen...
3065
                
e9bb0ce2   Ilyes Choubani   Correcting small ...
3066
3067
3068
3069
3070
                IF isa((*!dustem_fit).fixed_param_descs) THEN BEGIN
                    
                    Nfpar = n_elements((*(*!dustem_fit).fixed_param_descs))
                    res = (*(*!dustem_fit).fixed_param_init_values)
                    k = 0
53548c91   Ilyes Choubani   Display of frozen...
3071
3072
3073
3074
3075
3076
                    xxpos = 0.0
                    yypos = 0.9
                    ;xxpos = 0.0 ;might need to be modified
                    cgtext, xxpos, yypos, '-FROZEN-', charsize=-1, width=thiswidth, /normal  
                    xxpos=(1-thiswidth)/2
                    xyouts, xxpos, yypos, '-FROZEN-', charsize=1.6, /normal, color=0
e9bb0ce2   Ilyes Choubani   Correcting small ...
3077
3078
3079
3080
3081
                    
                    FOR i=0L,Nfpar-1 DO BEGIN
                        
                        parameter_description = (*(*!dustem_fit).fixed_param_descs)[i]     
                        parameter_type = dustem_parameter_description2type(parameter_description,string_name=string_name)
53548c91   Ilyes Choubani   Display of frozen...
3082
3083
3084
3085
3086
3087
3088
3089
3090
                        testpop = STRUPCASE(strmid(strtrim(parameter_description,2),3,1,/reverse_offset)) EQ 'O'
                        IF parameter_type NE 'PLUGIN' THEN BEGIN
                        
                            IF  parameter_type EQ 'FORTRAN' and  testpop then begin
                                 
                                indpop=fix(STRUPCASE(strmid(strtrim(parameter_description,2),12,1,/reverse_offset)))
                                string_name=(((*!dustem_params). GRAINS).grain_type)[indpop]
                                
                            ENDIF
e9bb0ce2   Ilyes Choubani   Correcting small ...
3091
                            
53548c91   Ilyes Choubani   Display of frozen...
3092
3093
3094
3095
3096
3097
3098
3099
3100
3101
                            yypos = 0.8 - k*0.09
                            xxpos = 0.0  
                            
                            str=strtrim(string(string_name+' = ',format=frmt0),2)
                            str1=str+string(res[i],format=frmt1)
                            cgtext, xxpos, yypos, str1, charsize=-1, width=thiswidth, /normal
                            xxpos=(1-thiswidth)/2 
                            ;stop
                            xyouts,xxpos,yypos,str1,color=0,/normal,charsize=1.
                            k+=1
e9bb0ce2   Ilyes Choubani   Correcting small ...
3102
                        
53548c91   Ilyes Choubani   Display of frozen...
3103
                        ENDIF    
e9bb0ce2   Ilyes Choubani   Correcting small ...
3104
                         
53548c91   Ilyes Choubani   Display of frozen...
3105
                    ENDFOR  
e9bb0ce2   Ilyes Choubani   Correcting small ...
3106
3107
3108
3109
                     
                ENDIF
                
                
e9bb0ce2   Ilyes Choubani   Correcting small ...
3110
                
5f04fa07   Ilyes Choubani   general update
3111
                ;stop
53548c91   Ilyes Choubani   Display of frozen...
3112
3113
3114
3115
3116
3117
3118
3119
3120
3121
3122
3123
3124
3125
3126
3127
3128
3129
3130
3131
3132
3133
3134
3135
3136
3137
                ;xxpos = 0.0;might need to be modified
                
                ;test so that this string isn't displayed when there are no free parameters: 
                
                prms_dscs = (*(*!dustem_fit).param_descs)
                prms_tps = strarr(n_elements(prms_dscs))
                
                for i=0L,n_elements(prms_dscs)-1 do begin
                    prms_tps[i] = dustem_parameter_description2type(prms_dscs[i])
                endfor
                
                testprms = where(prms_tps ne 'PLUGIN', ct_data)
                
                IF ct_data ne 0 then begin
                
                    if ~isa(yypos) then yypos = 0.9 else yypos-=0.1*1.6 ;not sure about this
                
                    cgtext, xxpos, yypos, '-FREE-', charsize=-1,width=thiswidth, /normal

                    xxpos=(1-thiswidth)/2
                    xyouts, xxpos, yypos, '-FREE-', charsize=1.6, /normal,color=0
                
                    ;stop
                    k=0   
                    res = dustem_interp
                    errors = dustem_spec
5f04fa07   Ilyes Choubani   general update
3138
                ;stop
53548c91   Ilyes Choubani   Display of frozen...
3139
3140
3141
3142
3143
3144
3145
3146
3147
3148
                
                    yypos-=0.1
                    yypostmp = yypos
                    FOR i=0L,Npar-1 DO BEGIN  
                      
                      parameter_description = (*(*!dustem_fit).param_descs)[i]
                      parameter_type = dustem_parameter_description2type(parameter_description,string_name=string_name)
                      testpop = STRUPCASE(strmid(strtrim(parameter_description,2),3,1,/reverse_offset)) EQ 'O'
                      ;stop  
                      ;STRUPCASE(strmid(strtrim(parameter_description,2),0,18)) eq '(*!DUSTEM_PARAMS).'  
e9bb0ce2   Ilyes Choubani   Correcting small ...
3149
                        
53548c91   Ilyes Choubani   Display of frozen...
3150
3151
3152
3153
3154
3155
3156
3157
3158
3159
3160
3161
3162
3163
3164
3165
3166
3167
3168
3169
3170
3171
3172
3173
                      IF  parameter_type EQ 'FORTRAN' and testpop then begin
                             
                            indpop=fix(STRUPCASE(strmid(strtrim(parameter_description,2),12,1,/reverse_offset)))
                            string_name=(((*!dustem_params). GRAINS).grain_type)[indpop]
                            
                            
                            yypos = yypostmp -  k*0.09
                            xxpos = 0.0    
                                                        
                            str=strtrim(string(string_name+' = ',format=frmt0),2)
                            ;stop    
                            str1=str+string(res[i],format=frmt1)+textoidl(' \pm ')+string(errors(i),format=frmt1)
                            ;stop
                            cgtext, xxpos, yypos, str1, charsize=-1, width=thiswidth, /normal
                            xxpos=(1-thiswidth)/2 
                            ;stop
                            xyouts,xxpos,yypos,str,color=0,/normal,charsize=1.
                            
                            k+=1            
                            ;stop
                      ENDIF
                      
                      ;STRUPCASE(strmid(strtrim(parameter_description,2),0,18)) eq '(*!DUSTEM_PARAMS).'
                      IF  parameter_type EQ 'FORTRAN' and ~testpop then begin
5f04fa07   Ilyes Choubani   general update
3174
                        
53548c91   Ilyes Choubani   Display of frozen...
3175
3176
3177
3178
3179
3180
3181
3182
3183
3184
3185
3186
3187
3188
3189
3190
3191
3192
3193
3194
3195
3196
                          ;indpop=fix(STRUPCASE(strmid(strtrim(parameter_description,2),12,1,/reverse_offset)))
                          ;string_name=(((*!dustem_params). GRAINS).grain_type)[indpop]
                          ;stop
                          ;choosing a step of 0.03 in norm coordinates
                           
                          yypos = yypostmp - k*0.09
                          xxpos = 0.0    
                                                      
                          str=strtrim(string(string_name+' = ',format=frmt0),2)
                          ;stop    
                          str1=str+string(res[i],format=frmt1)+textoidl(' \pm ')+string(errors(i),format=frmt1)
                          ;stop
                          cgtext, xxpos, yypos, str1, charsize=-1, width=thiswidth, /normal
                          xxpos=(1-thiswidth)/2 
                          ;stop
                          xyouts,xxpos,yypos,str,color=0,/normal,charsize=1.
                          
                          k+=1            
                          ;stop
                    ENDIF
                    
                    ENDFOR
fcb6eade   Ilyes Choubani   general update - ...
3197
                    
fcb6eade   Ilyes Choubani   general update - ...
3198
                ENDIF
53548c91   Ilyes Choubani   Display of frozen...
3199
                    
5f04fa07   Ilyes Choubani   general update
3200
3201
3202
3203
3204
3205
3206
3207
3208
3209
3210
3211
3212
                
            endelse
        
        end
        
        'PLUGINS':begin ;NOT SO SURE ABOUT THIS BLOCK . TEST IT WHEN YOU GET HOME
           
            p_dim = extra_spec
        
            Npar=n_elements(p_dim)
        
            if keyword_set(refresh) then begin ;(REFRESHED RUN) 
                
53548c91   Ilyes Choubani   Display of frozen...
3213
3214
3215
3216
3217
3218
                IF isa((*!dustem_fit).fixed_param_descs) THEN BEGIN
                    
                    Nfpar = n_elements((*(*!dustem_fit).fixed_param_descs))
                    res = (*(*!dustem_fit).fixed_param_init_values)
                    k=0
                    FOR i=0L,Nfpar-1 DO BEGIN
5f04fa07   Ilyes Choubani   general update
3219
                        
53548c91   Ilyes Choubani   Display of frozen...
3220
3221
3222
3223
3224
3225
3226
3227
3228
3229
3230
3231
3232
3233
3234
3235
3236
3237
3238
3239
3240
3241
3242
3243
3244
3245
3246
3247
3248
3249
3250
3251
3252
3253
3254
3255
3256
3257
3258
3259
3260
3261
3262
3263
3264
3265
3266
3267
3268
3269
3270
3271
3272
3273
3274
3275
3276
3277
3278
                        parameter_description = (*(*!dustem_fit).fixed_param_descs)[i]     
                        parameter_type = dustem_parameter_description2type(parameter_description,string_name=string_name)
                        ;Not sure about the wrapper data type that is mentioned in this procedure
                        IF parameter_type EQ 'PLUGIN' THEN BEGIN                       
                            yypos = 0.8 - k*0.09
                            k+=1
                        ENDIF 
                        
                    ENDFOR  
                                
                     
                ENDIF
                
                
                prms_dscs = (*(*!dustem_fit).param_descs)
                prms_tps = strarr(n_elements(prms_dscs))
                
                for i=0L,n_elements(prms_dscs)-1 do begin
                    prms_tps[i] = dustem_parameter_description2type(prms_dscs[i])
                endfor
                
                testprms = where(prms_tps EQ 'PLUGIN', ct_data)
                
                if ct_data ne 0 then begin
                
                    if ~isa(yypos) then yypos = 0.8 else yypos-=0.26 ;not sure about this
                    
                    
                    k=0
                    res = dustem_interp
                    errors = dustem_spec
                    yypostmp = yypos
                    
                    FOR i=0L,Npar-1 DO BEGIN  
                      ;stop
                        parameter_description = (*(*!dustem_fit).param_descs)[i]
                        parameter_type = dustem_parameter_description2type(parameter_description,string_name=string_name)
                      
                        IF parameter_type EQ 'PLUGIN' THEN BEGIN
                            
                            ii = strsplit(string_name,'_',count=countx) & ii = ii(countx-1)-1 ; Locating the last underscore to automate the extraction of the plugin's keyword 
                            mm = where(tag_names(*!dustem_plugin) eq strupcase(strmid(string_name,7,ii-7))) ;,coun) ; Selecting a plugin through matching the string name of the plugin form the scope system variable with the one read from the parameter description vector
                            prmtg = (*(*!dustem_plugin).(mm).paramtag)
                            indtg = (strmid(string_name,ii+1)) & indtg = strmid(indtg,0,/reverse_offset)     
                            indtg = fix(indtg)
                            prmtg = prmtg[indtg-1] 
                            yypos = yypostmp - k*0.09
                            xxpos = 0.0 
                            
                            str = strtrim(string(strmid(string_name,7,ii-7)+' ['+strmid(string_name,ii+1)+']: '+prmtg+' = ',format=frmt0),2)
                            str1 = str+string(res[i],format=frmt1)+textoidl(' \pm ')+string(errors(i),format=frmt1)
                            cgtext, xxpos, yypos, str1, charsize=-1, width=thiswidth, /normal
                            xxpos=(1-thiswidth)/2
                            cgtext, xxpos, yypos, str, charsize=-1, width=thiswidth, /normal
                            xxpos+=thiswidth;(1-thiswidth)/2
                            str = string(res[i],format=frmt1)+textoidl(' \pm ')+string(errors(i),format=frmt1)
    
                            xyouts,xxpos,yypos,str,color=0,/normal,charsize=1.
                            k+=1
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3279
                            
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                        ENDIF          
                                
                    
                    ENDFOR
                
             ENDIF
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e9bb0ce2   Ilyes Choubani   Correcting small ...
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            endif else begin ;(FROZEN RUN = title strings + fixed plugins (TBDONE))
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                IF isa((*!dustem_fit).fixed_param_descs) THEN BEGIN
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                    Nfpar = n_elements((*(*!dustem_fit).fixed_param_descs))
                    res = (*(*!dustem_fit).fixed_param_init_values)
                    k = 0
                    xxpos = 0.0
                    yypos = 0.9
                    ;xxpos = 0.0 ;might need to be modified
                    cgtext, xxpos, yypos, '-FROZEN-', charsize=-1, width=thiswidth, /normal  
                    xxpos=(1-thiswidth)/2
                    xyouts, xxpos, yypos, '-FROZEN-', charsize=1.6, /normal, color=0
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                    FOR i=0L,Nfpar-1 DO BEGIN
                        
                        parameter_description = (*(*!dustem_fit).fixed_param_descs)[i]     
                        parameter_type = dustem_parameter_description2type(parameter_description,string_name=string_name)
                        testpop = STRUPCASE(strmid(strtrim(parameter_description,2),3,1,/reverse_offset)) EQ 'O'
                        
                        IF parameter_type EQ 'PLUGIN' THEN BEGIN
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53548c91   Ilyes Choubani   Display of frozen...
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                            ii = strsplit(string_name,'_',count=countx) & ii = ii(countx-1)-1 ; Locating the last underscore to automate the extraction of the plugin's keyword 
                            mm = where(tag_names(*!dustem_plugin) eq strupcase(strmid(string_name,7,ii-7))) ;,coun) ; Selecting a plugin through matching the string name of the plugin form the scope system variable with the one read from the parameter description vector
                            prmtg = (*(*!dustem_plugin).(mm).paramtag)
                            indtg = (strmid(string_name,ii+1)) & indtg = strmid(indtg,0,/reverse_offset)     
                            indtg = fix(indtg)
                            prmtg = prmtg[indtg-1] 
                            
                            yypos = 0.8 - k*0.09
                            xxpos = 0.0  
                            
                            str = string(strmid(string_name,7,ii-7)+' ['+strmid(string_name,ii+1)+']: '+prmtg+' = ',format=frmt0)
                            str=strtrim(str,2)
                            str1=str+string(res[i],format=frmt1)
                            cgtext, xxpos, yypos, str1, charsize=-1, width=thiswidth, /normal
                            xxpos=(1-thiswidth)/2 
                            ;stop
                            xyouts,xxpos,yypos,str1,color=0,/normal,charsize=1.
                            k+=1
                        
                        ENDIF    
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53548c91   Ilyes Choubani   Display of frozen...
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                    ENDFOR  
                     
                ENDIF
                
                
                prms_dscs = (*(*!dustem_fit).param_descs)
                prms_tps = strarr(n_elements(prms_dscs))
                 
                for i=0L,n_elements(prms_dscs)-1 do begin
                    prms_tps[i] = dustem_parameter_description2type(prms_dscs[i])
                endfor
                
                testprms = where(prms_tps EQ 'PLUGIN', ct_data)
                
                IF ct_data ne 0 then begin
                
                
                    if ~isa(yypos) then yypos = 0.9 else yypos-=0.1*1.6 ;not sure about this
                     ;stop
                     ;xxpos = 0.0;might need to be modified
                    cgtext, xxpos, yypos, '-FREE-', charsize=-1,width=thiswidth, /normal
    
                    xxpos=(1-thiswidth)/2
                    xyouts, xxpos, yypos, '-FREE-', charsize=1.6, /normal,color=0
                    
                    
                    k=0
                    res = dustem_interp
                    errors = dustem_spec
                    yypos-=0.1
                    yypostmp = yypos
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53548c91   Ilyes Choubani   Display of frozen...
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                    FOR i=0L,Npar-1 DO BEGIN  
                      ;stop
                        parameter_description = (*(*!dustem_fit).param_descs)[i]
                        parameter_type = dustem_parameter_description2type(parameter_description,string_name=string_name)
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                        IF parameter_type EQ 'PLUGIN' THEN BEGIN
                            
                            ii = strsplit(string_name,'_',count=countx) & ii = ii(countx-1)-1 ; Locating the last underscore to automate the extraction of the plugin's keyword 
                            mm = where(tag_names(*!dustem_plugin) eq strupcase(strmid(string_name,7,ii-7))) ;,coun) ; Selecting a plugin through matching the string name of the plugin form the scope system variable with the one read from the parameter description vector
                            prmtg = (*(*!dustem_plugin).(mm).paramtag)
                            indtg = (strmid(string_name,ii+1)) & indtg = strmid(indtg,0,/reverse_offset)     
                            indtg = fix(indtg)
                            prmtg = prmtg[indtg-1] 
                             
                            yypos = yypostmp - k*0.09
                            xxpos = 0.0;15 
                            
                            str = string(strmid(string_name,7,ii-7)+' ['+strmid(string_name,ii+1)+']: '+prmtg+' = ',format=frmt0)
                            str=strtrim(str,2)
                            str1 = str+string(res[i],format=frmt1)+textoidl(' \pm ')+string(errors(i),format=frmt1)           
                            ;getting the width of the total string: string title +values +errors so we can place it the right way and not have to worry about its position
                            
                            cgtext, xxpos, yypos, str1, charsize=-1, width=thiswidth, /normal
                            xxpos=(1-thiswidth)/2 
                           
                            xyouts,xxpos,yypos,str,color=0,/normal,charsize=1.
                            k+=1
                            
                        ENDIF
                          
                        
5f04fa07   Ilyes Choubani   general update
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53548c91   Ilyes Choubani   Display of frozen...
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                    ENDFOR
                ENDIF
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            endelse
         
        
        
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        end
        
b5314324   Ilyes Choubani   updating the plot...
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    endcase


endif










b5314324   Ilyes Choubani   updating the plot...
3421
END