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src/idl/dustemwrap_plot_noobj.pro 32.6 KB
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PRO dustemwrap_plot_noobj,p_dim,st, $
                    dustem_sed,SED_spec, $
                    dustem_qsed,Q_spec, $
                    dustem_used,U_spec, $
                    dustem_polsed,P_spec, $
                    dustem_polfrac,SP_spec, $
                    dustem_psi_em,PSI_spec, $
                    dustem_ext,EXT_spec, $
                    dustem_qext,QEXT_spec, $
                    dustem_uext,UEXT_spec, $
                    dustem_polext,POLEXT_spec, $
                    dustem_fpolext,SPEXT_spec, $
                    dustem_psi_ext,PSIEXT_spec, $
                    _extra=_extra,help=help

;+
; NAME:
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;    dustemwrap_plot_noobj
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; PURPOSE:
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;    plots dustemwrap observed sed, predicted sed, predicted spectra for total Intensity, polarization in emission and extinction without OOP routines
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; CATEGORY:
;    DustEMWrap
; CALLING SEQUENCE:
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;    dustemwrap_plot_noobj,p_dim,st,dustem_sed,SED_spec,dustem_qsed,Q_spec,dustem_used,U_spec,dustem_polsed,P_spec,dustem_polfrac,SP_spec,dustem_psi_em,PSI_spec,dustem_ext,EXT_spec,dustem_qext,QEXT_spec,dustem_uext,UEXT_spec,dustem_polext,POLEXT_spec,dustem_fpolext,SPEXT_spec,dustem_psi_ext,PSIEXT_spec,_extra=_extra 
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; INPUTS:
;    p_dim
; OPTIONAL INPUT PARAMETERS:
;    st
;    dustem_sed
;    dustem_qsed
;    dustem_used
;    dustem_polsed
;    dustem_polfrac
;    dustem_psi_em
;    dustem_ext
;    dustem_qext
;    dustem_uext
;    dustem_polext
;    dustem_fpolext
;    dustem_psi_ext
; OUTPUTS:
;    dustem_sed
;    dustem_qsed
;    dustem_used
;    dustem_polsed
;    dustem_polfrac
;    dustem_psi_em
;    dustem_ext
;    dustem_qext
;    dustem_uext
;    dustem_polext
;    dustem_fpolext
;    dustem_psi_ext
;    SED_spec
;    Q_spec
;    U_spec
;    P_spec
;    SP_spec
;    PSI_spec
;    EXT_spec
;    QEXT_spec
;    UEXT_spec
;    POLEXT_spec
;    SPEXT_spec
;    PSIEXT_spec
; OPTIONAL OUTPUT PARAMETERS:
;    

; ACCEPTED KEY-WORDS:
;    help
; COMMON BLOCKS:
;    None
; SIDE EFFECTS:
;    Does a plot
; RESTRICTIONS:
;    The DustEM fortran code must be installed
;    The DustEMWrap IDL code must be installed
; PROCEDURES AND SUBROUTINES USED:
;
; EXAMPLES
;    
; MODIFICATION HISTORY:
;    Written by Ilyes Choubani
;    Evolution details on the DustEMWrap gitlab.
;-

IF keyword_set(help) THEN BEGIN
  doc_library,'dustemwrap_plot'
  goto,the_end
END

;This is also necessary for the plotting of the results of the fit (Last iteration) 
IF not keyword_set(st) THEN BEGIN
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;Activation of the plugins is needed because of the plotting of the total emission model that includes them. 
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  dustem_activate_plugins,p_dim/(*(*!dustem_fit).param_init_values),st=st  ; 0/0 division case?
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ENDIF 
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;# Emission

if not keyword_set(dustem_sed) and isa((*!dustem_data).sed) then begin ;better test?
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  dustem_sed = dustem_compute_sed(p_dim,st=st,SED_spec=SED_spec)
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  if !run_pol && !run_lin then begin
     dustem_polsed = dustem_compute_polsed(p_dim,st=st,P_spec=P_spec,SP_spec=SP_spec,dustem_polfrac=dustem_polfrac)
     toto = dustem_compute_stokes(p_dim,st=st,Q_spec=Q_spec,U_spec=U_spec,PSI_spec=PSI_spec,dustem_psi_em=dustem_psi_em) 
     dustem_qsed = toto[0]
     dustem_used = toto[1]   
  endif         
endif

;# Extinction

if not keyword_set(dustem_ext) and isa((*!dustem_data).ext) then begin
    dustem_ext = dustem_compute_ext(p_dim,st=st,EXT_spec=EXT_spec)
  
    if !run_pol && !run_lin then begin
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      dustem_polext = dustem_compute_polext(p_dim,st=st,polext_spec=POLEXT_spec,spext_spec=SPEXT_spec,dustem_fpolext=dustem_fpolext)
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      toto = dustem_compute_stokext(p_dim,st=st,QEXT_spec=QEXT_spec,UEXT_spec=UEXT_spec,PSIEXT_spe=PSIEXT_spec,dustem_psi_ext=dustem_psi_ext) 
      dustem_qext = toto[0]
      dustem_uext = toto[1]   
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    endif
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endif
  
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;IC: Will come back for this to include all datasets and their associated data.
;ADDING THIS BLOCK FOR COMPLETENESS
dd=(*(*!dustem_data).sed).values
ss=(*(*!dustem_data).sed).sigma
recomputed_chi2_sed   = total((dd-dustem_sed)^2/ss^2)
dof= n_elements((*(*!dustem_data).sed).values) - n_elements(*(*!dustem_fit).PARAM_DESCS)
recomputed_rchi2_sed  = recomputed_chi2_sed / dof

;print,'recomputed chi^2:',!dustem_iter.act,recomputed_rchi2_sed,recomputed_chi2_sed
mouchard=*!iteration_mouchard
new_mouchard=mouchard[0]
new_mouchard.iteration=!dustem_iter.act
new_mouchard.chi2=(*!dustem_fit).chi2
new_mouchard.rchi2=(*!dustem_fit).rchi2


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;IC: I've commented this test below but it was uncommented. I don't understand its function. 
;Current parameter values including plugins have been available at each iteration prior to commenting this.
;Leaving as is.

;JPB: need here to store values of current parameter values (including plugins) into !iteration_mouchard
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;help,(*!dustem_fit).CURRENT_PARAM_VALUES   ;This is not currently filled up ...
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;Below will work only for non plugin parameters
goto,skip1
param_descs=*(*!dustem_fit).param_descs
params_current=[0.D0]
FOR i=0L,n_elements(param_descs)-1 DO BEGIN
    str='params_current=[params_current,'+param_descs[i]+']'
    print,str
    toto=execute(str)
ENDFOR
params_current=params_current[1:*]
print,params_current

stop
skip1:
 
mouchard=[mouchard,new_mouchard]
!iteration_mouchard=ptr_new(mouchard)
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;LIST OF TESTS THAT NEED TO BE RAN SO THAT THE PLOTTING OF THE MODEL SPECTRA OCCURS

test_sed = isa((*!dustem_show).sed)
test_ext = isa((*!dustem_show).ext)
if !run_pol then begin
    test_polext = isa((*!dustem_show).polext)
    test_polsed = isa((*!dustem_show).polsed)
    test_polfrac = isa((*!dustem_show).polfrac)
    test_fpolext = isa((*!dustem_show).fpolext)
    test_psi_em = isa((*!dustem_show).psi_em)
    test_psi_ext = isa((*!dustem_show).psi_ext)
    test_qsed = isa((*!dustem_show).qsed)
    test_used = isa((*!dustem_show).used)
    test_qext = isa((*!dustem_show).qext)
    test_uext = isa((*!dustem_show).uext)
    test_m = test_sed or test_polsed or test_polfrac or test_qsed or test_used or test_psi_em
    test_x = test_ext or test_polext or test_fpolext or test_qext or test_uext or test_psi_ext
endif else begin
    test_m = test_sed 
    test_x = test_ext 
endelse

;testing on the fitting of emission vs extinction data

n_plgns = n_tags(*!dustem_plugin)

frmt0='(A36)'
frmt1='(1E10.2)'
frmt2='(10F10.2)'

;Instead of setting the extra tags for plotting in dustemcgwin, we'll place them in this (parent) procedure. 
tgnms_extra = tag_names(_extra)

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dustem_set_plot_range,test_sed, test_ext,_extra= _extra
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if isa((*!dustem_fit).current_param_errors) then begin
    errors = (*(*!dustem_fit).current_param_errors)
endif else begin
    errors = (*(*!dustem_fit).param_init_values)*0. 
ENDELSE 

if isa((*!dustem_fit).chi2) then begin
    chi2 = (*!dustem_fit).chi2    
endif else begin
    chi2 = la_undef()
endelse 

if isa((*!dustem_fit).rchi2) then begin
    rchi2 = (*!dustem_fit).rchi2    
endif else begin
    rchi2 = la_undef()
endelse 


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;==== These are arameters for window positioning
if !run_pol then BEGIN
    wdelta_x=60
    main_wxsize=910
    main_wysize=658

    param_wxpos=main_wxsize+wdelta_x
    param_wypos=15
    param_wxsize=350
    param_wysize=200

    plugin_wxpos=main_wxsize+wdelta_x
    plugin_wypos=300
    plugin_wxsize=350
    plugin_wysize=200
ENDIF ELSE BEGIN
    wdelta_x=60
    main_wxsize=640  ;default of cgwindow
    main_wysize=512  ;default of cgwindow

    param_wxpos=main_wxsize+wdelta_x;700
    param_wypos=15
    param_wxsize=350
    param_wysize=200

    plugin_wxpos=main_wxsize+wdelta_x;700
    plugin_wypos=300
    plugin_wxsize=350
    plugin_wysize=200
ENDELSE

if test_m then begin
    ;Generating emission window and saving window ID
    
    ;if iswinsed then begin    ;This is when the cgwindow does not exist already
        
    TVLCT, 255, 255, 255, 254 ; White color
    !P.Color = 253
    !P.Background = 254
    
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    IF !d.name NE 'PS' THEN BEGIN
        IF !run_pol THEN BEGIN
            window,0, xsize=main_wxsize,ysize=main_wysize,title='DUSTEMWRAP '+!dustem_version.version+' (EMISSION)',xpos=0,ypos=0
        ENDIF else BEGIN
            window,0,xsize=main_wxsize,ysize=main_wysize,title='DUSTEMWRAP '+!dustem_version.version+' (EMISSION)',xpos=0, ypos=0;, wback='grey';,wobject=winobj_m
        ENDELSE
    ENDIF

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    ;Plotting model string (legend)
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    xxpos = 0.015 
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    yypos = 0.97
    ;Plotting Hydrogen column density string (legend)
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    cgtext,  xxpos, yypos,'Model : '+!dustem_model,color=0,/normal,charsize = 1.2;,/addcmd ;& cmdind_m+=1 This is the first command in the window
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    yypos = 0.95
    cgtext, xxpos, yypos,textoidl('N_{H}')+textoidl(' (H/cm^2) : ')+strmid(string(*!dustem_HCD,format='(1E10.2)'),2),color=0,/normal,charsize = 1.2;,/addcmd & cmdind_m+=1
    
    ;Plotting of the number of iterations completed by the fitter
    
    ;Plotting of the number of runs
    ;Getting the width of the unrefreshed string
    widthtot=0.
    ;cgtext, xxpos, yypos,'Runs : ',color=0,/normal,charsize=-1,width=thiswidth,/addcmd & cmdind_m+=1
    cgtext, xxpos, yypos,'Iteration : ',color=0,/normal,charsize=-1,width=thiswidth 
    widthtext = thiswidth
    widthtot+= thiswidth ;fixed width
    !dustemcgwin_ncmds.runs.txtwdth = thiswidth
    
    ;Getting the width of the refreshed string
    cgtext, xxpos, yypos,strtrim(!dustem_iter.act,2),color=0,/normal,charsize=-1,width=thiswidth 
    widthtot+= thiswidth;varying width        
    
    ;These two lines will also have to      be modified when plotting the refreshed values
    xxpos = 0.015 ;1.0 - widthtot - 0.03
    yypos = 0.015
    
    ;Displaying fixed part
    ;cgtext, xxpos, yypos,'Runs : ',color=0,/normal,charsize = 1.35,/addcmd & cmdind_m+=1
    cgtext, xxpos, yypos,'Iteration : ',color=0,/normal,charsize = 1.35 
    ;Displaying refreshed part (first run . This is the command that will be replaced)
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    cgtext, xxpos + widthtext*1.35 + 0.015 , yypos,strtrim(!dustem_iter.act,2),color=0,/normal,charsize = 1.0 
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    ;plotting of (mostly) fixed data for rchi2
    ;Since the format of the strings is specified, the length/width of the string in thex direction is fixed. 
    
    
    ;Getting the width of the unrefreshed string
    widthtot=0.
    cgtext, xxpos, yypos,textoidl('\chi^{2} : '),color=0,/normal,charsize=-1,width=thiswidth 
    widthtext = thiswidth
    widthtot+= thiswidth ;fixed width
    
    ;Getting the width of the refresh.ed string
    cgtext, xxpos, yypos,strtrim(string(chi2,format=frmt2),2),color=0,/normal,charsize=-1,width=thiswidth 
    widthtot+= thiswidth;varying width        
    ;saving the command string width to replace it
    
    xxpos = 1.0 - widthtot - 0.03
    
    yypos = 0.97
    
    ;Displaying fixed part
    cgtext, xxpos, yypos,textoidl('\chi^{2} : '),color=0,/normal,charsize = 1.0 
    ;Displaying refreshed part (first run . This is the command that will be replaced)
    
    cgtext, xxpos + widthtext , yypos,strtrim(string(chi2,format=frmt2),2),color=0,/normal,charsize = 1.0 
   
    
    ;plotting of (mostly) fixed data for rchi2
    
    ;Getting the width of the unrefreshed string
    widthtot=0.
    cgtext, xxpos, yypos,textoidl('r_{\chi^{2}} : '),color=0,/normal,charsize=-1,width=thiswidth 
    widthtext = thiswidth
    widthtot+= thiswidth ;fixed width
    ;!dustemcgwin_ncmds.rchi2.txtwdth1 = thiswidth
    ;Getting the width of the refreshed string
    cgtext, xxpos, yypos,strtrim(string(rchi2,format=frmt2),2),color=0,/normal,charsize=-1,width=thiswidth 
    widthtot+= thiswidth;varying width        
    
    
    ;These two lines will also have to      be modified when plotting the refreshed values
    xxpos = 1.0 - widthtot - 0.03
    yypos = 0.95
    
    ;Displaying fixed part
    cgtext, xxpos, yypos,textoidl('r_{\chi^{2}} : '),color=0,/normal,charsize = 1.35 
    ;Displaying refreshed part (first run . This is the command that will be replaced)
    cgtext, xxpos + widthtext , yypos,strtrim(string(rchi2,format=frmt2),2),color=0,/normal,charsize = 1.0 
    ;saving the command id to replace it 
    
    ;Plotting of the title of the dashboard (plot(s))
    
    
    ;NB issue here because the user can't modify the title after the dustem_mpfit_data call at the main procedure level (user proc)
    ;Getting the width of the title 
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    tit=!dustem_plot_range.title_m
    
    xxpos = 0.5
    yypos =0.96
    
    ;the runs inbetween
    if !dustem_end EQ 0 then cgtext, xxpos , yypos,tit+' (RUNNING)',color=0,/normal,charsize = 1.6,alignment=0.5
    
    ;subsequent iterations to the end of the fit
    if !dustem_end EQ -1 then cgtext, xxpos , yypos,tit,color=0,/normal,charsize = 1.6,alignment=0.5
    
    ;last iteration of the fit
    if !dustem_end EQ 1 then cgtext, xxpos , yypos,tit+' (FINAL RUN)',color=0,/normal,charsize = 1.6,alignment=0.5
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   if !run_pol then begin
        ;,wback='grey'
        
        ;position arrays for plot and normalized graph
        
        ;THIS IS HARD-CODED IN A VERY SILLY WAY
        
        p_sed = [0.05,0.67,0.475,0.90]
        p_psed = [0.525,0.67,0.95,0.90]
        p_spsed = [0.05,0.375,0.475,0.575]
        p_psised = [0.525,0.375,0.95,0.575]
        p_qsed = [0.05,0.12,0.475,0.35]  
        p_used = [0.525,0.12,0.95,0.35]
        
        np_sed = [0.05,0.60,0.475,0.67]
        np_psed = [0.525,0.60,0.95,0.67]
        np_qsed = [0.05,0.05,0.475,0.12] 
        np_used = [0.525,0.05,0.95,0.12]
        
        p_sed[1]+= 0.0125 & p_sed[3]+= 0.0125 
        p_psed[1]+= 0.0125 & p_psed[3]+= 0.0125
        p_spsed[1]+= 0.0125 & p_spsed[3]+= 0.0125
        p_psised[1]+= 0.0125 & p_psised[3]+= 0.0125
        p_qsed[1]+= 0.0125 & p_qsed[3]+= 0.0125
        p_used[1]+= 0.0125 & p_used[3]+= 0.0125
        
        np_sed[1]+= 0.0125 & np_sed[3]+= 0.0125 
        np_psed[1]+= 0.0125 & np_psed[3]+= 0.0125
        np_qsed[1]+= 0.0125 & np_qsed[3]+= 0.0125
        np_used[1]+= 0.0125 & np_used[3]+= 0.0125
        
        
          
    endif else begin
        p_sed  = [0.07,0.30,0.97,0.85]
        np_sed = [0.07,0.10,0.97,0.30]
    
    endelse

    ;Plotting of sed data axes (whether or not data is present)
    plotsym,0,/fill ;you might need to execute this again. hmm...
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;stop
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    ;This is not the right test the user might want to show the prediction for sed and fit the stokes parameters
    if ~test_sed then begin ; SED data is not present (For completeness) # This is only valid when !run_pol=1
        
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        dustem_plot_dataset, st, dataset='SED', /nodata, position=p_sed, _extra=_extra 
        dustem_plot_dataset, st, dataset='SED', /nodata, /norm, position=np_sed, _extra=_extra 
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    endif else begin ;SED exists
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           ;this plots the observed SED
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           dustem_plot_dataset, st, dataset='SED', position=p_sed, _extra=_extra
8a2cb251   Jean-Philippe Bernard   modifcations to c...
427
           ;this plots the predicted spectrum and predicted SED
bffa7018   Ilyes Choubani   update
428
           dustem_plot_dataset, st, dustem_sed,SED_spec, dataset='SED', /refresh ,position=p_sed, _extra=_extra 
8a2cb251   Jean-Philippe Bernard   modifcations to c...
429
           ;This plots an empty normalized plot
bffa7018   Ilyes Choubani   update
430
           dustem_plot_dataset, st, dataset='SED',/norm, position=np_sed, _extra=_extra ;I think nodata can also be used too
8a2cb251   Jean-Philippe Bernard   modifcations to c...
431
           ;This plots the normalized observed SED - best fit
bffa7018   Ilyes Choubani   update
432
           dustem_plot_dataset, st, dustem_sed,SED_spec, dataset='SED', /norm, /refresh,position=np_sed, _extra=_extra 
ed831104   Ilyes Choubani   no obj plotting
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    endelse
    

      if !run_pol then begin ;then goto, end_m
        
        if ~test_qsed then begin ;Qsed is not present
            
bffa7018   Ilyes Choubani   update
440
441
            dustem_plot_dataset, st, dataset='QSED', /nodata, position=p_qsed, _extra=_extra 
            dustem_plot_dataset, st, dataset='QSED', /nodata, /norm, position=np_qsed, _extra=_extra 
ed831104   Ilyes Choubani   no obj plotting
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        endif else begin ;Qsed data is present
                
            ;Plotting of postive values if they exist (if hidden data is present it is plotted if not an empty plot is rendered)
bffa7018   Ilyes Choubani   update
446
            dustem_plot_dataset, st, dataset='QSED', position=p_qsed,/positive_only, _extra=_extra 
ed831104   Ilyes Choubani   no obj plotting
447
            ;Refreshing the positive_only plot ONLY if there is data. If not do nothing
bffa7018   Ilyes Choubani   update
448
            dustem_plot_dataset, st, dustem_qsed,Q_spec, dataset='QSED',/positive_only, /refresh ,position=p_qsed, _extra=_extra 
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bffa7018   Ilyes Choubani   update
451
            dustem_plot_dataset, st, dataset='QSED', position=p_qsed, /addcmd,/negative_only, _extra=_extra 
ed831104   Ilyes Choubani   no obj plotting
452
            ;Refreshing the negative_only plot ONLY if there is data. If not do nothing
bffa7018   Ilyes Choubani   update
453
            dustem_plot_dataset, st, dustem_qsed,Q_spec,dataset='QSED',/negative_only, /refresh ,position=p_qsed, _extra=_extra
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bffa7018   Ilyes Choubani   update
456
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            dustem_plot_dataset, st, dataset='QSED',/norm, position=np_qsed, _extra=_extra  ;I think nodata can also be uqsed too
            dustem_plot_dataset, st, dustem_qsed,Q_spec,dataset='QSED', /norm, /refresh,position=np_qsed, _extra=_extra 
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      endelse
      
         
              
        if ~test_used then begin ;used is not present
            
bffa7018   Ilyes Choubani   update
465
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            dustem_plot_dataset, st, dataset='USED', /nodata, position=p_used, _extra=_extra 
            dustem_plot_dataset, st, dataset='USED', /nodata, /norm, position=np_used, _extra=_extra 
ed831104   Ilyes Choubani   no obj plotting
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        endif else begin ;used data is present
                       
            ;Plotting of postive values if they exist (if hidden data is present it is plotted if not an empty plot is rendred)
bffa7018   Ilyes Choubani   update
471
            dustem_plot_dataset, st, dataset='USED', position=p_used,/positive_only, _extra=_extra 
ed831104   Ilyes Choubani   no obj plotting
472
            ;Refreshing the positive_only plot ONLY if there is data. If not do nothing
bffa7018   Ilyes Choubani   update
473
            dustem_plot_dataset, st, dustem_used,U_spec, dataset='USED',/positive_only, /refresh ,position=p_used, _extra=_extra 
ed831104   Ilyes Choubani   no obj plotting
474
            
bffa7018   Ilyes Choubani   update
475
            dustem_plot_dataset, st, dataset='USED', position=p_used, winid=winid_m,/negative_only, _extra=_extra 
ed831104   Ilyes Choubani   no obj plotting
476
            ;Refreshing the negative_only plot ONLY if there is data. If not do nothing
bffa7018   Ilyes Choubani   update
477
            dustem_plot_dataset, st, dustem_used,U_spec, dataset='USED',/negative_only, /refresh ,position=p_used, _extra=_extra 
ed831104   Ilyes Choubani   no obj plotting
478
            
bffa7018   Ilyes Choubani   update
479
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            dustem_plot_dataset, st, dataset='USED',/norm, position=np_used, _extra=_extra ;I think nodata can also be uused too
            dustem_plot_dataset, st, dustem_used,U_spec, dataset='USED', /norm, /refresh,position=np_used, _extra=_extra 
ed831104   Ilyes Choubani   no obj plotting
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      endelse
      
      if ~test_psi_em then begin ; psi_em data is not present (For completeness) # This is only valid when !run_pol=1
          
bffa7018   Ilyes Choubani   update
486
          dustem_plot_dataset, st, dataset='psi_em', /nodata, position=p_psised, /addcmd, winid=winid_m, _extra=_extra
ed831104   Ilyes Choubani   no obj plotting
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      endif else begin ;psi_em exists
         
bffa7018   Ilyes Choubani   update
490
491
        dustem_plot_dataset, st, dataset='psi_em', position=p_psised, _extra=_extra 
        dustem_plot_dataset, st, dustem_psi_em,PSI_spec, dataset='psi_em', /refresh ,position=p_psised, _extra=_extra
ed831104   Ilyes Choubani   no obj plotting
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      endelse
        
      
      if ~test_polsed then begin ; polsed data is not present (For completeness) # This is only valid when !run_pol=1
          
bffa7018   Ilyes Choubani   update
498
499
          dustem_plot_dataset, st, dataset='polsed', /nodata, position=p_psed, _extra=_extra 
          dustem_plot_dataset, st, dataset='polsed', /nodata, /norm, position=np_psed, _extra=_extra
ed831104   Ilyes Choubani   no obj plotting
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      endif else begin 
      
bffa7018   Ilyes Choubani   update
503
504
        dustem_plot_dataset, st, dataset='polsed', position=p_psed, _extra=_extra
        dustem_plot_dataset, st, dustem_polsed,P_spec, dataset='polsed', /refresh ,position=p_psed, _extra=_extra 
ed831104   Ilyes Choubani   no obj plotting
505
      
bffa7018   Ilyes Choubani   update
506
507
        dustem_plot_dataset, st, dataset='polsed',/norm, position=np_psed, _extra=_extra ;I think nodata can also be upolsed too
        dustem_plot_dataset, st, dustem_polsed,P_spec, dataset='polsed', /norm, /refresh,position=np_psed, _extra=_extra
ed831104   Ilyes Choubani   no obj plotting
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      endelse      
      
      
      if ~test_polfrac then begin ; polfrac data is not present (For completeness) # This is only valid when !run_pol=1
          
bffa7018   Ilyes Choubani   update
514
          dustem_plot_dataset, st, dataset='polfrac', /nodata, position=p_spsed, _extra=_extra
ed831104   Ilyes Choubani   no obj plotting
515
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      endif else begin ;polfrac exists


bffa7018   Ilyes Choubani   update
519
520
         dustem_plot_dataset, st, dataset='polfrac', position=p_spsed, _extra=_extra 
         dustem_plot_dataset, st, dustem_polfrac,SP_spec,SED_spec, dataset='polfrac', /refresh ,position=p_spsed, _extra=_extra 
ed831104   Ilyes Choubani   no obj plotting
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      endelse  
      

    ENDIF
55275be6   Ilyes Choubani   allowing no_obj p...
526
    
ed831104   Ilyes Choubani   no obj plotting
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ENDIF 



ee57e2f7   Jean-Philippe Bernard   removed stops
532
;stop
ed831104   Ilyes Choubani   no obj plotting
533
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if test_x then begin
    ;Generating extinction window and saving window ID
55275be6   Ilyes Choubani   allowing no_obj p...
535
    if !run_pol then window,1,xsize=main_wxsize,ysize=main_wysize,title='DUSTEMWRAP '+!dustem_version.version+' (EXTINCTION)' else window,1,xsize=main_wxsize,ysize=main_wysize,title='DUSTEMWRAP '+!dustem_version.version+' (EXTINCTION)';, wback='grey';,wobject=winobj_m
ed831104   Ilyes Choubani   no obj plotting
536
    
ed831104   Ilyes Choubani   no obj plotting
537
    
55275be6   Ilyes Choubani   allowing no_obj p...
538
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    ;Plotting model string (legend)
    xxpos = 0.015
    yypos = 0.97
    ;Plotting Hydrogen column density string (legend)
    cgtext, xxpos, yypos,'Model : '+!dustem_model,color=0,/normal,charsize = 1.2;,/addcmd ;& cmdind_m+=1 This is the first command in the window
    yypos = 0.95
    cgtext, xxpos, yypos,textoidl('N_{H}')+textoidl(' (H/cm^2) : ')+strmid(string(*!dustem_HCD,format='(1E10.2)'),2),color=0,/normal,charsize = 1.2
ed831104   Ilyes Choubani   no obj plotting
545
    
55275be6   Ilyes Choubani   allowing no_obj p...
546
    ;Plotting of the number of iterations completed by the fitter
ed831104   Ilyes Choubani   no obj plotting
547
    
55275be6   Ilyes Choubani   allowing no_obj p...
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    ;Plotting of the number of runs
    ;Getting the width of the unrefreshed string
    widthtot=0.
    ;cgtext, xxpos, yypos,'Runs : ',color=0,/normal,charsize=-1,width=thiswidth,/addcmd & cmdind_x+=1
    cgtext, xxpos, yypos,'Iteration : ',color=0,/normal,charsize=-1,width=thiswidth
    widthtext = thiswidth
    widthtot+= thiswidth ;fixed width
    
    ;Getting the width of the refreshed string
    cgtext, xxpos, yypos,strtrim(!dustem_iter.act,2),color=0,/normal,charsize=-1,width=thiswidth
    widthtot+= thiswidth;varying width        
    
    ;These two lines will also have to      be modified when plotting the refreshed values
    xxpos = 0.015 ;1.0 - widthtot - 0.03
    yypos = 0.015
    
    ;Displaying fixed part
    ;cgtext, xxpos, yypos,'Runs : ',color=0,/normal,charsize = 1.35,/addcmd & cmdind_x+=1
    cgtext, xxpos, yypos,'Iteration : ',color=0,/normal,charsize = 1.35
    ;Displaying refreshed part (first run . This is the command that will be replaced)
    cgtext, xxpos + widthtext + 0.015 , yypos,strtrim(!dustem_iter.act,2),color=0,/normal,charsize = 1.0
    ;saving the command id to replace it
    
    
    ;plotting of (mostly) fixed data for rchi2
    ;Since the format of the strings is specified, the length/width of the string in thex direction is fixed. 
    
    
    ;Getting the width of the unrefreshed string
    widthtot=0.
    cgtext, xxpos, yypos,textoidl('\chi^{2} : '),color=0,/normal,charsize=-1,width=thiswidth
    widthtext = thiswidth
    widthtot+= thiswidth ;fixed width
    
    ;Getting the width of the refresh.ed string
    cgtext, xxpos, yypos,strtrim(string(chi2,format=frmt2),2),color=0,/normal,charsize=-1,width=thiswidth
    widthtot+= thiswidth;varying width        
    ;saving the command string width to replace it
    
    
    xxpos = 1.0 - widthtot - 0.03
    
    yypos = 0.97
    
    ;Displaying fixed part
    cgtext, xxpos, yypos,textoidl('\chi^{2} : '),color=0,/normal,charsize = 1.0
    ;Displaying refreshed part (first run . This is the command that will be replaced)
    
    cgtext, xxpos + widthtext , yypos,strtrim(string(chi2,format=frmt2),2),color=0,/normal,charsize = 1.0
    
    ;saving the command id to replace it
      
    
    
    ;plotting of (mostly) fixed data for rchi2
    
    ;Getting the width of the unrefreshed string
    widthtot=0.
    cgtext, xxpos, yypos,textoidl('r_{\chi^{2}} : '),color=0,/normal,charsize=-1,width=thiswidth
    widthtext = thiswidth
    widthtot+= thiswidth ;fixed width
    ;!dustemcgwin_ncmds.rchi2.txtwdth1 = thiswidth
    ;Getting the width of the refreshed string
    cgtext, xxpos, yypos,strtrim(string(rchi2,format=frmt2),2),color=0,/normal,charsize=-1,width=thiswidth
    widthtot+= thiswidth;varying width        
    
    ;These two lines will also have to      be modified when plotting the refreshed values
    xxpos = 1.0 - widthtot - 0.03
    yypos = 0.95
    
    ;Displaying fixed part
    cgtext, xxpos, yypos,textoidl('r_{\chi^{2}} : '),color=0,/normal,charsize = 1.35
    ;Displaying refreshed part (first run . This is the command that will be replaced)
    cgtext, xxpos + widthtext , yypos,strtrim(string(rchi2,format=frmt2),2),color=0,/normal,charsize = 1.0
    ;saving the command id to replace it
    
3d0f6b67   Ilyes Choubani   rest of plotting ...
624
625
   ;plotting of title 
    tit=!dustem_plot_range.title_x
55275be6   Ilyes Choubani   allowing no_obj p...
626
    
3d0f6b67   Ilyes Choubani   rest of plotting ...
627
628
    xxpos = 0.5
    yypos =0.96
55275be6   Ilyes Choubani   allowing no_obj p...
629
    
3d0f6b67   Ilyes Choubani   rest of plotting ...
630
631
    ;the runs inbetween
    if !dustem_end EQ 0 then cgtext, xxpos , yypos,tit+' (RUNNING)',color=0,/normal,charsize = 1.6,alignment=0.5
55275be6   Ilyes Choubani   allowing no_obj p...
632
    
3d0f6b67   Ilyes Choubani   rest of plotting ...
633
634
    ;subsequent iterations to the end of the fit
    if !dustem_end EQ -1 then cgtext, xxpos , yypos,tit,color=0,/normal,charsize = 1.6,alignment=0.5
55275be6   Ilyes Choubani   allowing no_obj p...
635
    
3d0f6b67   Ilyes Choubani   rest of plotting ...
636
637
    ;last iteration of the fit
    if !dustem_end EQ 1 then cgtext, xxpos , yypos,tit+' (FINAL RUN)',color=0,/normal,charsize = 1.6,alignment=0.5
55275be6   Ilyes Choubani   allowing no_obj p...
638
    
55275be6   Ilyes Choubani   allowing no_obj p...
639
    
ed831104   Ilyes Choubani   no obj plotting
640
    if !run_pol then begin
bffa7018   Ilyes Choubani   update
641
       
ed831104   Ilyes Choubani   no obj plotting
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        ;position arrays for plot and normalized graph
        
        ;THIS IS HARD-CODED IN A VERY SILLY WAY
        
        p_ext = [0.05,0.67,0.475,0.90]
        p_pext = [0.525,0.67,0.95,0.90]
        p_spext = [0.05,0.375,0.475,0.575] ; Should we plot this? tau_polext/tau_ext_tot. YES FOR NOW...
        p_psiext = [0.525,0.375,0.95,0.575]
        p_qext = [0.05,0.12,0.475,0.35]  
        p_uext = [0.525,0.12,0.95,0.35]
        
        np_ext = [0.05,0.60,0.475,0.67]
        np_pext = [0.525,0.60,0.95,0.67]
        np_qext = [0.05,0.05,0.475,0.12] 
        np_uext = [0.525,0.05,0.95,0.12]
        
        p_ext[1]+= 0.0125 & p_ext[3]+= 0.0125 
        p_pext[1]+= 0.0125 & p_pext[3]+= 0.0125
        p_spext[1]+= 0.0125 & p_spext[3]+= 0.0125
        p_psiext[1]+= 0.0125 & p_psiext[3]+= 0.0125
        p_qext[1]+= 0.0125 & p_qext[3]+= 0.0125
        p_uext[1]+= 0.0125 & p_uext[3]+= 0.0125
        
        np_ext[1]+= 0.0125 & np_ext[3]+= 0.0125 
        np_pext[1]+= 0.0125 & np_pext[3]+= 0.0125
        np_qext[1]+= 0.0125 & np_qext[3]+= 0.0125
        np_uext[1]+= 0.0125 & np_uext[3]+= 0.0125
        
        
          
    endif else begin
        p_ext  = [0.07,0.30,0.97,0.85]
        np_ext = [0.07,0.10,0.97,0.30]
    
    endelse

    ;Plotting of sed data axes (whether or not data is present)
    plotsym,0,/fill ;you might need to execute this again. hmm...


    ;This is not the right test the user might want to show the prediction for sed and fit the stokes parameters
    if ~test_ext then begin ; EXT data is not present (For completeness) # This is only valid when !run_pol=1
        
bffa7018   Ilyes Choubani   update
685
686
        dustem_plot_dataset, st, dataset='EXT', /nodata, position=p_ext, _extra=_extra 
        dustem_plot_dataset, st, dataset='EXT', /nodata, /norm, position=np_ext, _extra=_extra
ed831104   Ilyes Choubani   no obj plotting
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688

    endif else begin ;EXT exists
ed831104   Ilyes Choubani   no obj plotting
689
      
bffa7018   Ilyes Choubani   update
690
691
        dustem_plot_dataset, st, dataset='EXT', position=p_ext, _extra=_extra
        dustem_plot_dataset, st, dustem_ext,EXT_spec, dataset='EXT', /refresh ,position=p_ext, _extra=_extra 
55275be6   Ilyes Choubani   allowing no_obj p...
692
        
bffa7018   Ilyes Choubani   update
693
        dustem_plot_dataset, st, dataset='EXT',/norm, position=np_ext, _extra=_extra ;I think nodata can also be used too
55275be6   Ilyes Choubani   allowing no_obj p...
694
        
bffa7018   Ilyes Choubani   update
695
        dustem_plot_dataset, st, dustem_ext,EXT_spec, dataset='EXT', /norm, /refresh,position=np_ext, _extra=_extra 
55275be6   Ilyes Choubani   allowing no_obj p...
696
               
ed831104   Ilyes Choubani   no obj plotting
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    endelse
    
    
      if !run_pol then begin 
        
        if ~test_qext then begin ;Qext is not present
            
bffa7018   Ilyes Choubani   update
704
705
            dustem_plot_dataset, st, dataset='QEXT', /nodata, position=p_qext, _extra=_extra 
            dustem_plot_dataset, st, dataset='QEXT', /nodata, /norm, position=np_qext, _extra=_extra 
ed831104   Ilyes Choubani   no obj plotting
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707
        
        endif else begin ;Qext data is present
55275be6   Ilyes Choubani   allowing no_obj p...
708
709
                    
            ;Plotting of postive values if they exist (if hidden data is present it is plotted if not an empty plot is rendered)
bffa7018   Ilyes Choubani   update
710
            dustem_plot_dataset, st, dataset='QEXT', position=p_qext,/positive_only, _extra=_extra 
55275be6   Ilyes Choubani   allowing no_obj p...
711
            ;Refreshing the positive_only plot ONLY if there is data. If not do nothing
ed831104   Ilyes Choubani   no obj plotting
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bffa7018   Ilyes Choubani   update
713
            dustem_plot_dataset, st, dustem_qext,QEXT_spec, dataset='QEXT',/positive_only, /refresh ,position=p_qext, _extra=_extra 
55275be6   Ilyes Choubani   allowing no_obj p...
714
            
bffa7018   Ilyes Choubani   update
715
            dustem_plot_dataset, st, dataset='QEXT', position=p_qext,/negative_only, _extra=_extra
55275be6   Ilyes Choubani   allowing no_obj p...
716
            ;Refreshing the negative_only plot ONLY if there is data. If not do nothing
bffa7018   Ilyes Choubani   update
717
            dustem_plot_dataset, st, dustem_qext,QEXT_spec,dataset='QEXT',/negative_only, /refresh ,position=p_qext, _extra=_extra
55275be6   Ilyes Choubani   allowing no_obj p...
718
        
bffa7018   Ilyes Choubani   update
719
720
            dustem_plot_dataset, st, dataset='QEXT',/norm, position=np_qext, _extra=_extra ;I think nodata can also be uqsed too
            dustem_plot_dataset, st, dustem_qext,QEXT_spec,dataset='QEXT', /norm, /refresh,position=np_qext, _extra=_extra
55275be6   Ilyes Choubani   allowing no_obj p...
721

ed831104   Ilyes Choubani   no obj plotting
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      endelse
          ;stop        
        if ~test_uext then begin ;uext is not present
            
bffa7018   Ilyes Choubani   update
726
727
            dustem_plot_dataset, st, dataset='UEXT', /nodata, position=p_uext, _extra=_extra
            dustem_plot_dataset, st, dataset='UEXT', /nodata, /norm, position=np_uext, _extra=_extra 
ed831104   Ilyes Choubani   no obj plotting
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        endif else begin ;uext data is present
55275be6   Ilyes Choubani   allowing no_obj p...
730
            
ed831104   Ilyes Choubani   no obj plotting
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            ;stop
                ;Plotting of postive values if they exist (if hidden data is present it is plotted if not an empty plot is rendred)
bffa7018   Ilyes Choubani   update
733
                dustem_plot_dataset, st, dataset='UEXT', position=p_uext,/positive_only, _extra=_extra
ed831104   Ilyes Choubani   no obj plotting
734
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                ;Refreshing the positive_only plot ONLY if there is data. If not do nothing
bffa7018   Ilyes Choubani   update
736
                dustem_plot_dataset, st, dustem_uext,UEXT_spec, dataset='UEXT',/positive_only, /refresh ,position=p_uext, _extra=_extra 
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55275be6   Ilyes Choubani   allowing no_obj p...
738
              
bffa7018   Ilyes Choubani   update
739
                dustem_plot_dataset, st, dataset='UEXT', position=p_uext,/negative_only, _extra=_extra 
ed831104   Ilyes Choubani   no obj plotting
740
                ;Refreshing the negative_only plot ONLY if there is data. If not do nothing
bffa7018   Ilyes Choubani   update
741
                dustem_plot_dataset, st, dustem_uext,UEXT_spec, dataset='UEXT',/negative_only, /refresh ,position=p_uext, _extra=_extra
ed831104   Ilyes Choubani   no obj plotting
742
                
ed831104   Ilyes Choubani   no obj plotting
743
                
bffa7018   Ilyes Choubani   update
744
745
                dustem_plot_dataset, st, dataset='UEXT',/norm, position=np_uext, _extra=_extra ;I think nodata can also be uused too
                dustem_plot_dataset, st, dustem_uext,UEXT_spec, dataset='UEXT', /norm, /refresh,position=np_uext, _extra=_extra 
55275be6   Ilyes Choubani   allowing no_obj p...
746
747
            
                      
ed831104   Ilyes Choubani   no obj plotting
748
749
750
751
      endelse
      
      if ~test_psi_ext then begin ; psi_ext data is not present (For completeness) # This is only valid when !run_pol=1
          
bffa7018   Ilyes Choubani   update
752
          dustem_plot_dataset, st, dataset='PSI_EXT', /nodata, position=p_psiext, _extra=_extra  
ed831104   Ilyes Choubani   no obj plotting
753
754
755

      endif else begin ;psi_ext exists

bffa7018   Ilyes Choubani   update
756
757
              dustem_plot_dataset, st, dataset='psi_ext', position=p_psiext, _extra=_extra 
              dustem_plot_dataset, st, dustem_psi_ext,PSIEXT_spec, dataset='psi_ext', /refresh ,position=p_psiext, _extra=_extra 
55275be6   Ilyes Choubani   allowing no_obj p...
758
              
ed831104   Ilyes Choubani   no obj plotting
759
              
ed831104   Ilyes Choubani   no obj plotting
760
761
762
763
764
      endelse
        
      
      if ~test_polext then begin ; polext data is not present (For completeness) # This is only valid when !run_pol=1
          
bffa7018   Ilyes Choubani   update
765
766
          dustem_plot_dataset, st, dataset='polext', /nodata, position=p_pext, _extra=_extra 
          dustem_plot_dataset, st, dataset='polext', /nodata, /norm, position=np_pext, _extra=_extra 
ed831104   Ilyes Choubani   no obj plotting
767
768
769

      endif else begin ;polext exists

bffa7018   Ilyes Choubani   update
770
771
        dustem_plot_dataset, st, dataset='polext', position=p_pext, _extra=_extra 
        dustem_plot_dataset, st, dustem_polext,POLEXT_spec, dataset='polext', /refresh ,position=p_pext, _extra=_extra 
55275be6   Ilyes Choubani   allowing no_obj p...
772
         
bffa7018   Ilyes Choubani   update
773
774
        dustem_plot_dataset, st, dataset='polext',/norm, position=np_pext, _extra=_extra  ;I think nodata can also be upolsed too
        dustem_plot_dataset, st, dustem_polext,POLEXT_spec, dataset='polext', /norm, /refresh,position=np_pext, _extra=_extra 
55275be6   Ilyes Choubani   allowing no_obj p...
775
        
ed831104   Ilyes Choubani   no obj plotting
776
777
778
779
780
      endelse      
      
      
      if ~test_fpolext then begin ; fpolext data is not present (For completeness) # This is only valid when !run_pol=1
          
bffa7018   Ilyes Choubani   update
781
          dustem_plot_dataset, st, dataset='fpolext', /nodata, position=p_spext, _extra=_extra  
55275be6   Ilyes Choubani   allowing no_obj p...
782
          
ed831104   Ilyes Choubani   no obj plotting
783
784
785

      endif else begin ;fpolext exists

55275be6   Ilyes Choubani   allowing no_obj p...
786
        
bffa7018   Ilyes Choubani   update
787
788
        dustem_plot_dataset, st, dataset='fpolext', position=p_spext, _extra=_extra 
        dustem_plot_dataset, st, dustem_fpolext,SPEXT_spec,EXT_spec, dataset='fpolext', /refresh ,position=p_spext, _extra=_extra
55275be6   Ilyes Choubani   allowing no_obj p...
789

ed831104   Ilyes Choubani   no obj plotting
790

ed831104   Ilyes Choubani   no obj plotting
791
792
793
794
795
      endelse  
      

    ENDIF
        
ed831104   Ilyes Choubani   no obj plotting
796
797
798
799
800
     
          
ENDIF 


3d0f6b67   Ilyes Choubani   rest of plotting ...
801
802
if !dustem_end then !dustem_end = -1 ;so that the last iteration is only plotted once.

55275be6   Ilyes Choubani   allowing no_obj p...
803
;PLOTTING OF THE PARAMETERS
134c5e51   Jean-Philippe Bernard   modfied to be abl...
804
805
806
IF !d.name NE 'PS' THEN BEGIN
    window,2,xpos=param_wxpos,ypos=param_wypos,xsize=param_wxsize,ysize=param_wysize,title='DUSTEMWRAP '+!dustem_version.version+' (PARAMETERS)' ; keeping the same y dimension of the emission/extinction plot? 
ENDIF
f9089dc2   Ilyes Choubani   implementing the ...
807
808
dustem_plot_dataset, st, p_dim, errors,dataset='PARAMETERS',_extra=_extra ;& cmdind_prms+=1
dustem_plot_dataset, st,  p_dim,errors,dataset='PARAMETERS',/refresh, _extra=_extra 
ed831104   Ilyes Choubani   no obj plotting
809

55275be6   Ilyes Choubani   allowing no_obj p...
810
;PLOTTING OF THE PLUGINS
ed831104   Ilyes Choubani   no obj plotting
811
IF (tag_names(*!dustem_plugin))(0) NE 'NONE' THEN BEGIN  
134c5e51   Jean-Philippe Bernard   modfied to be abl...
812
813
814
    IF !d.name NE 'PS' THEN BEGIN
        window,3,xpos=plugin_wxpos,ypos=plugin_wypos,xsize=plugin_wxsize,ysize=plugin_wysize,title='DUSTEMWRAP '+!dustem_version.version+' (PLUGINS)' ; keeping the same y dimension of the emission/extinction plot? 
    ENDIF
f9089dc2   Ilyes Choubani   implementing the ...
815
816
    dustem_plot_dataset, st, p_dim, errors,dataset='PLUGINS',_extra=_extra ;& cmdind_prms+=1
    dustem_plot_dataset, st, p_dim, errors,dataset='PLUGINS', /refresh , winid=winid_plgns, _extra=_extra 
ed831104   Ilyes Choubani   no obj plotting
817
818
819
820
821
822
     
ENDIF

the_end:

END