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src/idl/dustemwrap_plot_noobj.pro 34.5 KB
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PRO dustemwrap_plot_noobj,p_dim,st, $
                    dustem_sed,SED_spec, $
                    dustem_qsed,Q_spec, $
                    dustem_used,U_spec, $
                    dustem_polsed,P_spec, $
                    dustem_polfrac,SP_spec, $
                    dustem_psi_em,PSI_spec, $
                    dustem_ext,EXT_spec, $
                    dustem_qext,QEXT_spec, $
                    dustem_uext,UEXT_spec, $
                    dustem_polext,POLEXT_spec, $
                    dustem_fpolext,SPEXT_spec, $
                    dustem_psi_ext,PSIEXT_spec, $
                    _extra=_extra,help=help

;+
; NAME:
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;    dustemwrap_plot_noobj
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; PURPOSE:
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;    plots dustemwrap observed sed, predicted sed, predicted spectra for total Intensity, polarization in emission and extinction without OOP routines
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; CATEGORY:
;    DustEMWrap
; CALLING SEQUENCE:
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;    dustemwrap_plot_noobj,p_dim,st,dustem_sed,SED_spec,dustem_qsed,Q_spec,dustem_used,U_spec,dustem_polsed,P_spec,dustem_polfrac,SP_spec,dustem_psi_em,PSI_spec,dustem_ext,EXT_spec,dustem_qext,QEXT_spec,dustem_uext,UEXT_spec,dustem_polext,POLEXT_spec,dustem_fpolext,SPEXT_spec,dustem_psi_ext,PSIEXT_spec,_extra=_extra 
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; INPUTS:
;    p_dim
; OPTIONAL INPUT PARAMETERS:
;    st
;    dustem_sed
;    dustem_qsed
;    dustem_used
;    dustem_polsed
;    dustem_polfrac
;    dustem_psi_em
;    dustem_ext
;    dustem_qext
;    dustem_uext
;    dustem_polext
;    dustem_fpolext
;    dustem_psi_ext
; OUTPUTS:
;    dustem_sed
;    dustem_qsed
;    dustem_used
;    dustem_polsed
;    dustem_polfrac
;    dustem_psi_em
;    dustem_ext
;    dustem_qext
;    dustem_uext
;    dustem_polext
;    dustem_fpolext
;    dustem_psi_ext
;    SED_spec
;    Q_spec
;    U_spec
;    P_spec
;    SP_spec
;    PSI_spec
;    EXT_spec
;    QEXT_spec
;    UEXT_spec
;    POLEXT_spec
;    SPEXT_spec
;    PSIEXT_spec
; OPTIONAL OUTPUT PARAMETERS:
;    

; ACCEPTED KEY-WORDS:
;    help
; COMMON BLOCKS:
;    None
; SIDE EFFECTS:
;    Does a plot
; RESTRICTIONS:
;    The DustEM fortran code must be installed
;    The DustEMWrap IDL code must be installed
; PROCEDURES AND SUBROUTINES USED:
;
; EXAMPLES
;    
; MODIFICATION HISTORY:
;    Written by Ilyes Choubani
;    Evolution details on the DustEMWrap gitlab.
;-

IF keyword_set(help) THEN BEGIN
  doc_library,'dustemwrap_plot'
  goto,the_end
END

;This is also necessary for the plotting of the results of the fit (Last iteration) 
IF not keyword_set(st) THEN BEGIN
  ;Activation of the plugins is needed because of the plotting of the total emission model that includes them. 
  dustem_activate_plugins,p_dim/(*(*!dustem_fit).param_init_values),st  ; 0/0 division case?
  
  ;# Emission
  ;if isa(!dustem_data.sed) then begin ;using !dustem_data instead of !dustem_show because in this release the user is compelled to fit IQU whether in M or X
  if not keyword_set(dustem_sed) and isa((*!dustem_data).sed) then begin ;better test?
  
      dustem_sed = dustem_compute_sed(p_dim,st,SED_spec)
      
      if !run_pol && !run_lin then begin
          
          dustem_polsed = dustem_compute_polsed(p_dim,st,P_spec,SP_spec,dustem_polfrac)
          toto = dustem_compute_stokes(p_dim,st,dustem_qsed,dustem_used,Q_spec,U_spec,PSI_spec,dustem_psi_em) 
        
          
      endif         
  endif
  
  ;# Extinction
;   if isa(!dustem_data.ext) then begin
  if not keyword_set(dustem_ext) and isa((*!dustem_data).ext) then begin
      dustem_ext = dustem_compute_ext(p_dim,st,EXT_spec)
      
      if !run_pol && !run_lin then begin
          
          dustem_polext = dustem_compute_polext(p_dim,st,POLEXT_spec,SPEXT_spec,dustem_fpolext)
          toto = dustem_compute_stokext(p_dim,st,dustem_qext,dustem_uext,QEXT_spec,UEXT_spec,PSIEXT_spec,dustem_psi_ext) 
          
      endif
  endif
  
ENDIF ELSE BEGIN ;st is provided 
    ;stop

    ;# Emission
    ;if isa(!dustem_data.sed) then begin
    if not keyword_set(dustem_sed) and isa((*!dustem_data).sed) then begin
        dustem_sed = dustem_compute_sed(p_dim,st,SED_spec)
        
        if !run_pol && !run_lin then begin
            
            dustem_polsed = dustem_compute_polsed(p_dim,st,P_spec,SP_spec,dustem_polfrac)
            toto = dustem_compute_stokes(p_dim,st,dustem_qsed,dustem_used,Q_spec,U_spec,PSI_spec,dustem_psi_em) 
            ;stop    
        endif
    endif
    
    ;# Extinction
    ;if isa(!dustem_data.ext) then begin
    
    if not keyword_set(dustem_ext) and isa((*!dustem_data).ext) then begin
    
        dustem_ext = dustem_compute_ext(p_dim,st,EXT_spec)
        
        if !run_pol && !run_lin then begin
            
            dustem_polext = dustem_compute_polext(p_dim,st,POLEXT_spec,SPEXT_spec,dustem_fpolext)
            toto = dustem_compute_stokext(p_dim,st,dustem_qext,dustem_uext,QEXT_spec,UEXT_spec,PSIEXT_spec,dustem_psi_ext) 
            
        endif
    endif
    
ENDELSE 

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;IC: Will come back for this to include all datasets and their associated data.
;ADDING THIS BLOCK FOR COMPLETENESS
dd=(*(*!dustem_data).sed).values
ss=(*(*!dustem_data).sed).sigma
recomputed_chi2_sed   = total((dd-dustem_sed)^2/ss^2)
dof= n_elements((*(*!dustem_data).sed).values) - n_elements(*(*!dustem_fit).PARAM_DESCS)
recomputed_rchi2_sed  = recomputed_chi2_sed / dof

;print,'recomputed chi^2:',!dustem_iter.act,recomputed_rchi2_sed,recomputed_chi2_sed
mouchard=*!iteration_mouchard
new_mouchard=mouchard[0]
new_mouchard.iteration=!dustem_iter.act
new_mouchard.chi2=(*!dustem_fit).chi2
new_mouchard.rchi2=(*!dustem_fit).rchi2


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;IC: I've commented this test below but it was uncommented. I don't understand its function. 
;Current parameter values including plugins have been available at each iteration prior to commenting this.
;Leaving as is.

;JPB: need here to store values of current parameter values (including plugins) into !iteration_mouchard
help,(*!dustem_fit).CURRENT_PARAM_VALUES   ;This is not currently filled up ...

;Below will work only for non plugin parameters
goto,skip1
param_descs=*(*!dustem_fit).param_descs
params_current=[0.D0]
FOR i=0L,n_elements(param_descs)-1 DO BEGIN
    str='params_current=[params_current,'+param_descs[i]+']'
    print,str
    toto=execute(str)
ENDFOR
params_current=params_current[1:*]
print,params_current

stop
skip1:
 
mouchard=[mouchard,new_mouchard]
!iteration_mouchard=ptr_new(mouchard)
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;LIST OF TESTS THAT NEED TO BE RAN SO THAT THE PLOTTING OF THE MODEL SPECTRA OCCURS

test_sed = isa((*!dustem_show).sed)
test_ext = isa((*!dustem_show).ext)
if !run_pol then begin
    test_polext = isa((*!dustem_show).polext)
    test_polsed = isa((*!dustem_show).polsed)
    test_polfrac = isa((*!dustem_show).polfrac)
    test_fpolext = isa((*!dustem_show).fpolext)
    test_psi_em = isa((*!dustem_show).psi_em)
    test_psi_ext = isa((*!dustem_show).psi_ext)
    test_qsed = isa((*!dustem_show).qsed)
    test_used = isa((*!dustem_show).used)
    test_qext = isa((*!dustem_show).qext)
    test_uext = isa((*!dustem_show).uext)
    test_m = test_sed or test_polsed or test_polfrac or test_qsed or test_used or test_psi_em
    test_x = test_ext or test_polext or test_fpolext or test_qext or test_uext or test_psi_ext
endif else begin
    test_m = test_sed 
    test_x = test_ext 
endelse

;testing on the fitting of emission vs extinction data

n_plgns = n_tags(*!dustem_plugin)

frmt0='(A36)'
frmt1='(1E10.2)'
frmt2='(10F10.2)'

;Instead of setting the extra tags for plotting in dustemcgwin, we'll place them in this (parent) procedure. 
tgnms_extra = tag_names(_extra)

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;I have decided to keep track of the command index manually as I did not find any command online that does this.
cmdind_m = 0 ;for emission
cmdind_x = 0 ;for extinction
;trying to do the same thing for parameters and plugins
cmdind_prms = 0 ;for parameters
cmdind_plgns = 0 ;for plugins

;ADDING PLUGIN(S) TO SPECTRUM----------------

;these following indices will be used to change the keep the same information in the _extra structure
;this is an initial solution until I finish coding the _extra-filtering procedure. 

iswinsed = !dustemcgwin_id.sed EQ la_undef()
iswinext = !dustemcgwin_id.ext EQ la_undef()

;trying to do the same thing for parameters and plugins
;But we need to know if the extinction or the emission mode is on.
;so the use of ths pointer will be different than the others
iswinprms = !dustemcgwin_id.prms EQ la_undef()
iswinplgns = !dustemcgwin_id.plgns EQ la_undef()


;plotstrct = !p
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;I think I will test over the presence of the errors because they are not computed at that point.

;errors = ((*!dustem_fit).current_param_errors)
if isa((*!dustem_fit).current_param_errors) then begin
    errors = (*(*!dustem_fit).current_param_errors)
endif else begin
    errors = (*(*!dustem_fit).param_init_values)*0. 
ENDELSE 

if isa((*!dustem_fit).chi2) then begin
    chi2 = (*!dustem_fit).chi2    
endif else begin
    chi2 = la_undef()
endelse 

if isa((*!dustem_fit).rchi2) then begin
    rchi2 = (*!dustem_fit).rchi2    
endif else begin
    rchi2 = la_undef()
endelse 


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;==== These are arameters for window positioning
if !run_pol then BEGIN
    wdelta_x=60
    main_wxsize=910
    main_wysize=658

    param_wxpos=main_wxsize+wdelta_x
    param_wypos=15
    param_wxsize=350
    param_wysize=200

    plugin_wxpos=main_wxsize+wdelta_x
    plugin_wypos=300
    plugin_wxsize=350
    plugin_wysize=200
ENDIF ELSE BEGIN
    wdelta_x=60
    main_wxsize=640  ;default of cgwindow
    main_wysize=512  ;default of cgwindow

    param_wxpos=main_wxsize+wdelta_x;700
    param_wypos=15
    param_wxsize=350
    param_wysize=200

    plugin_wxpos=main_wxsize+wdelta_x;700
    plugin_wypos=300
    plugin_wxsize=350
    plugin_wysize=200
ENDELSE

if test_m then begin
    ;Generating emission window and saving window ID
    
    ;if iswinsed then begin    ;This is when the cgwindow does not exist already
        
    TVLCT, 255, 255, 255, 254 ; White color
    !P.Color = 253
    !P.Background = 254
    
    if !run_pol then window,0, xsize=main_wxsize,ysize=main_wysize,title='DUSTEMWRAP '+!dustem_version.version+' (EMISSION)',xpos=0,ypos=0 else window, 0,xsize=main_wxsize,ysize=main_wysize,title='DUSTEMWRAP '+!dustem_version.version+' (EMISSION)',xpos=0, ypos=0;, wback='grey';,wobject=winobj_m
    
    ;Plotting model string (legend)
    xxpos = 0.015
    yypos = 0.97
    ;Plotting Hydrogen column density string (legend)
    cgtext, xxpos, yypos,'Model : '+!dustem_model,color=0,/normal,charsize = 1.2;,/addcmd ;& cmdind_m+=1 This is the first command in the window
    yypos = 0.95
    cgtext, xxpos, yypos,textoidl('N_{H}')+textoidl(' (H/cm^2) : ')+strmid(string(*!dustem_HCD,format='(1E10.2)'),2),color=0,/normal,charsize = 1.2;,/addcmd & cmdind_m+=1
    
    ;Plotting of the number of iterations completed by the fitter
    
    ;Plotting of the number of runs
    ;Getting the width of the unrefreshed string
    widthtot=0.
    ;cgtext, xxpos, yypos,'Runs : ',color=0,/normal,charsize=-1,width=thiswidth,/addcmd & cmdind_m+=1
    cgtext, xxpos, yypos,'Iteration : ',color=0,/normal,charsize=-1,width=thiswidth 
    widthtext = thiswidth
    widthtot+= thiswidth ;fixed width
    !dustemcgwin_ncmds.runs.txtwdth = thiswidth
    
    ;Getting the width of the refreshed string
    cgtext, xxpos, yypos,strtrim(!dustem_iter.act,2),color=0,/normal,charsize=-1,width=thiswidth 
    widthtot+= thiswidth;varying width        
    
    ;These two lines will also have to      be modified when plotting the refreshed values
    xxpos = 0.015 ;1.0 - widthtot - 0.03
    yypos = 0.015
    
    ;Displaying fixed part
    ;cgtext, xxpos, yypos,'Runs : ',color=0,/normal,charsize = 1.35,/addcmd & cmdind_m+=1
    cgtext, xxpos, yypos,'Iteration : ',color=0,/normal,charsize = 1.35 
    ;Displaying refreshed part (first run . This is the command that will be replaced)
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    cgtext, xxpos + widthtext*1.35 + 0.015 , yypos,strtrim(!dustem_iter.act,2),color=0,/normal,charsize = 1.0 
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    ;plotting of (mostly) fixed data for rchi2
    ;Since the format of the strings is specified, the length/width of the string in thex direction is fixed. 
    
    
    ;Getting the width of the unrefreshed string
    widthtot=0.
    cgtext, xxpos, yypos,textoidl('\chi^{2} : '),color=0,/normal,charsize=-1,width=thiswidth 
    widthtext = thiswidth
    widthtot+= thiswidth ;fixed width
    
    ;Getting the width of the refresh.ed string
    cgtext, xxpos, yypos,strtrim(string(chi2,format=frmt2),2),color=0,/normal,charsize=-1,width=thiswidth 
    widthtot+= thiswidth;varying width        
    ;saving the command string width to replace it
    
    xxpos = 1.0 - widthtot - 0.03
    
    yypos = 0.97
    
    ;Displaying fixed part
    cgtext, xxpos, yypos,textoidl('\chi^{2} : '),color=0,/normal,charsize = 1.0 
    ;Displaying refreshed part (first run . This is the command that will be replaced)
    
    cgtext, xxpos + widthtext , yypos,strtrim(string(chi2,format=frmt2),2),color=0,/normal,charsize = 1.0 
   
    
    ;plotting of (mostly) fixed data for rchi2
    
    ;Getting the width of the unrefreshed string
    widthtot=0.
    cgtext, xxpos, yypos,textoidl('r_{\chi^{2}} : '),color=0,/normal,charsize=-1,width=thiswidth 
    widthtext = thiswidth
    widthtot+= thiswidth ;fixed width
    ;!dustemcgwin_ncmds.rchi2.txtwdth1 = thiswidth
    ;Getting the width of the refreshed string
    cgtext, xxpos, yypos,strtrim(string(rchi2,format=frmt2),2),color=0,/normal,charsize=-1,width=thiswidth 
    widthtot+= thiswidth;varying width        
    
    
    ;These two lines will also have to      be modified when plotting the refreshed values
    xxpos = 1.0 - widthtot - 0.03
    yypos = 0.95
    
    ;Displaying fixed part
    cgtext, xxpos, yypos,textoidl('r_{\chi^{2}} : '),color=0,/normal,charsize = 1.35 
    ;Displaying refreshed part (first run . This is the command that will be replaced)
    cgtext, xxpos + widthtext , yypos,strtrim(string(rchi2,format=frmt2),2),color=0,/normal,charsize = 1.0 
    ;saving the command id to replace it 
    
    ;Plotting of the title of the dashboard (plot(s))
    
    
    ;NB issue here because the user can't modify the title after the dustem_mpfit_data call at the main procedure level (user proc)
    ;Getting the width of the title 
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    tit=!dustem_plot_range.title_m;
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    cgtext, 0.3, 0.95,tit+' (RUNNING)',color=0,/normal,charsize=-1,width=thiswidth 
    widthtot = thiswidth
    xxpos = (1 - thiswidth)/2
    yypos = 0.96
    
    cgtext, 0.3, 0.95,tit,color=0,/normal,charsize=-1,width=thiswidth 
     
    cgtext, xxpos, yypos,tit,color=0,/normal,charsize = 1.6 & cmdind_m+=1
    xxpos+=thiswidth*1.6
    cgtext, xxpos, yypos,' (RUNNING)',color=0,/normal,charsize = 1.6 
    
   if !run_pol then begin
        ;,wback='grey'
        
        ;position arrays for plot and normalized graph
        
        ;THIS IS HARD-CODED IN A VERY SILLY WAY
        
        p_sed = [0.05,0.67,0.475,0.90]
        p_psed = [0.525,0.67,0.95,0.90]
        p_spsed = [0.05,0.375,0.475,0.575]
        p_psised = [0.525,0.375,0.95,0.575]
        p_qsed = [0.05,0.12,0.475,0.35]  
        p_used = [0.525,0.12,0.95,0.35]
        
        np_sed = [0.05,0.60,0.475,0.67]
        np_psed = [0.525,0.60,0.95,0.67]
        np_qsed = [0.05,0.05,0.475,0.12] 
        np_used = [0.525,0.05,0.95,0.12]
        
        p_sed[1]+= 0.0125 & p_sed[3]+= 0.0125 
        p_psed[1]+= 0.0125 & p_psed[3]+= 0.0125
        p_spsed[1]+= 0.0125 & p_spsed[3]+= 0.0125
        p_psised[1]+= 0.0125 & p_psised[3]+= 0.0125
        p_qsed[1]+= 0.0125 & p_qsed[3]+= 0.0125
        p_used[1]+= 0.0125 & p_used[3]+= 0.0125
        
        np_sed[1]+= 0.0125 & np_sed[3]+= 0.0125 
        np_psed[1]+= 0.0125 & np_psed[3]+= 0.0125
        np_qsed[1]+= 0.0125 & np_qsed[3]+= 0.0125
        np_used[1]+= 0.0125 & np_used[3]+= 0.0125
        
        
          
    endif else begin
        p_sed  = [0.07,0.30,0.97,0.85]
        np_sed = [0.07,0.10,0.97,0.30]
    
    endelse

    ;Plotting of sed data axes (whether or not data is present)
    plotsym,0,/fill ;you might need to execute this again. hmm...
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;stop
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    ;This is not the right test the user might want to show the prediction for sed and fit the stokes parameters
    if ~test_sed then begin ; SED data is not present (For completeness) # This is only valid when !run_pol=1
        
bffa7018   Ilyes Choubani   update
468
469
        dustem_plot_dataset, st, dataset='SED', /nodata, position=p_sed, _extra=_extra 
        dustem_plot_dataset, st, dataset='SED', /nodata, /norm, position=np_sed, _extra=_extra 
ed831104   Ilyes Choubani   no obj plotting
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    endif else begin ;SED exists
8a2cb251   Jean-Philippe Bernard   modifcations to c...
472
           ;this plots the observed SED
bffa7018   Ilyes Choubani   update
473
           dustem_plot_dataset, st, dataset='SED', position=p_sed, _extra=_extra
8a2cb251   Jean-Philippe Bernard   modifcations to c...
474
           ;this plots the predicted spectrum and predicted SED
bffa7018   Ilyes Choubani   update
475
           dustem_plot_dataset, st, dustem_sed,SED_spec, dataset='SED', /refresh ,position=p_sed, _extra=_extra 
8a2cb251   Jean-Philippe Bernard   modifcations to c...
476
           ;This plots an empty normalized plot
bffa7018   Ilyes Choubani   update
477
           dustem_plot_dataset, st, dataset='SED',/norm, position=np_sed, _extra=_extra ;I think nodata can also be used too
8a2cb251   Jean-Philippe Bernard   modifcations to c...
478
           ;This plots the normalized observed SED - best fit
bffa7018   Ilyes Choubani   update
479
           dustem_plot_dataset, st, dustem_sed,SED_spec, dataset='SED', /norm, /refresh,position=np_sed, _extra=_extra 
ed831104   Ilyes Choubani   no obj plotting
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    endelse
    

      if !run_pol then begin ;then goto, end_m
        
        if ~test_qsed then begin ;Qsed is not present
            
bffa7018   Ilyes Choubani   update
487
488
            dustem_plot_dataset, st, dataset='QSED', /nodata, position=p_qsed, _extra=_extra 
            dustem_plot_dataset, st, dataset='QSED', /nodata, /norm, position=np_qsed, _extra=_extra 
ed831104   Ilyes Choubani   no obj plotting
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        endif else begin ;Qsed data is present
                
            ;Plotting of postive values if they exist (if hidden data is present it is plotted if not an empty plot is rendered)
bffa7018   Ilyes Choubani   update
493
            dustem_plot_dataset, st, dataset='QSED', position=p_qsed,/positive_only, _extra=_extra 
ed831104   Ilyes Choubani   no obj plotting
494
            ;Refreshing the positive_only plot ONLY if there is data. If not do nothing
bffa7018   Ilyes Choubani   update
495
            dustem_plot_dataset, st, dustem_qsed,Q_spec, dataset='QSED',/positive_only, /refresh ,position=p_qsed, _extra=_extra 
ed831104   Ilyes Choubani   no obj plotting
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bffa7018   Ilyes Choubani   update
498
            dustem_plot_dataset, st, dataset='QSED', position=p_qsed, /addcmd,/negative_only, _extra=_extra 
ed831104   Ilyes Choubani   no obj plotting
499
            ;Refreshing the negative_only plot ONLY if there is data. If not do nothing
bffa7018   Ilyes Choubani   update
500
            dustem_plot_dataset, st, dustem_qsed,Q_spec,dataset='QSED',/negative_only, /refresh ,position=p_qsed, _extra=_extra
ed831104   Ilyes Choubani   no obj plotting
501
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bffa7018   Ilyes Choubani   update
503
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            dustem_plot_dataset, st, dataset='QSED',/norm, position=np_qsed, _extra=_extra  ;I think nodata can also be uqsed too
            dustem_plot_dataset, st, dustem_qsed,Q_spec,dataset='QSED', /norm, /refresh,position=np_qsed, _extra=_extra 
ed831104   Ilyes Choubani   no obj plotting
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      endelse
      
         
              
        if ~test_used then begin ;used is not present
            
bffa7018   Ilyes Choubani   update
512
513
            dustem_plot_dataset, st, dataset='USED', /nodata, position=p_used, _extra=_extra 
            dustem_plot_dataset, st, dataset='USED', /nodata, /norm, position=np_used, _extra=_extra 
ed831104   Ilyes Choubani   no obj plotting
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        endif else begin ;used data is present
                       
            ;Plotting of postive values if they exist (if hidden data is present it is plotted if not an empty plot is rendred)
bffa7018   Ilyes Choubani   update
518
            dustem_plot_dataset, st, dataset='USED', position=p_used,/positive_only, _extra=_extra 
ed831104   Ilyes Choubani   no obj plotting
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            ;Refreshing the positive_only plot ONLY if there is data. If not do nothing
bffa7018   Ilyes Choubani   update
520
            dustem_plot_dataset, st, dustem_used,U_spec, dataset='USED',/positive_only, /refresh ,position=p_used, _extra=_extra 
ed831104   Ilyes Choubani   no obj plotting
521
            
bffa7018   Ilyes Choubani   update
522
            dustem_plot_dataset, st, dataset='USED', position=p_used, winid=winid_m,/negative_only, _extra=_extra 
ed831104   Ilyes Choubani   no obj plotting
523
            ;Refreshing the negative_only plot ONLY if there is data. If not do nothing
bffa7018   Ilyes Choubani   update
524
            dustem_plot_dataset, st, dustem_used,U_spec, dataset='USED',/negative_only, /refresh ,position=p_used, _extra=_extra 
ed831104   Ilyes Choubani   no obj plotting
525
            
bffa7018   Ilyes Choubani   update
526
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            dustem_plot_dataset, st, dataset='USED',/norm, position=np_used, _extra=_extra ;I think nodata can also be uused too
            dustem_plot_dataset, st, dustem_used,U_spec, dataset='USED', /norm, /refresh,position=np_used, _extra=_extra 
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      endelse
      
      if ~test_psi_em then begin ; psi_em data is not present (For completeness) # This is only valid when !run_pol=1
          
bffa7018   Ilyes Choubani   update
533
          dustem_plot_dataset, st, dataset='psi_em', /nodata, position=p_psised, /addcmd, winid=winid_m, _extra=_extra
ed831104   Ilyes Choubani   no obj plotting
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      endif else begin ;psi_em exists
         
bffa7018   Ilyes Choubani   update
537
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        dustem_plot_dataset, st, dataset='psi_em', position=p_psised, _extra=_extra 
        dustem_plot_dataset, st, dustem_psi_em,PSI_spec, dataset='psi_em', /refresh ,position=p_psised, _extra=_extra
ed831104   Ilyes Choubani   no obj plotting
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      endelse
        
      
      if ~test_polsed then begin ; polsed data is not present (For completeness) # This is only valid when !run_pol=1
          
bffa7018   Ilyes Choubani   update
545
546
          dustem_plot_dataset, st, dataset='polsed', /nodata, position=p_psed, _extra=_extra 
          dustem_plot_dataset, st, dataset='polsed', /nodata, /norm, position=np_psed, _extra=_extra
ed831104   Ilyes Choubani   no obj plotting
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      endif else begin 
      
bffa7018   Ilyes Choubani   update
550
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        dustem_plot_dataset, st, dataset='polsed', position=p_psed, _extra=_extra
        dustem_plot_dataset, st, dustem_polsed,P_spec, dataset='polsed', /refresh ,position=p_psed, _extra=_extra 
ed831104   Ilyes Choubani   no obj plotting
552
      
bffa7018   Ilyes Choubani   update
553
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        dustem_plot_dataset, st, dataset='polsed',/norm, position=np_psed, _extra=_extra ;I think nodata can also be upolsed too
        dustem_plot_dataset, st, dustem_polsed,P_spec, dataset='polsed', /norm, /refresh,position=np_psed, _extra=_extra
ed831104   Ilyes Choubani   no obj plotting
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      endelse      
      
      
      if ~test_polfrac then begin ; polfrac data is not present (For completeness) # This is only valid when !run_pol=1
          
bffa7018   Ilyes Choubani   update
561
          dustem_plot_dataset, st, dataset='polfrac', /nodata, position=p_spsed, _extra=_extra
ed831104   Ilyes Choubani   no obj plotting
562
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      endif else begin ;polfrac exists


bffa7018   Ilyes Choubani   update
566
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         dustem_plot_dataset, st, dataset='polfrac', position=p_spsed, _extra=_extra 
         dustem_plot_dataset, st, dustem_polfrac,SP_spec,SED_spec, dataset='polfrac', /refresh ,position=p_spsed, _extra=_extra 
ed831104   Ilyes Choubani   no obj plotting
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      endelse  
      

    ENDIF
55275be6   Ilyes Choubani   allowing no_obj p...
573
    
ed831104   Ilyes Choubani   no obj plotting
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ENDIF 



ee57e2f7   Jean-Philippe Bernard   removed stops
579
;stop
ed831104   Ilyes Choubani   no obj plotting
580
581
if test_x then begin
    ;Generating extinction window and saving window ID
55275be6   Ilyes Choubani   allowing no_obj p...
582
    if !run_pol then window,1,xsize=main_wxsize,ysize=main_wysize,title='DUSTEMWRAP '+!dustem_version.version+' (EXTINCTION)' else window,1,xsize=main_wxsize,ysize=main_wysize,title='DUSTEMWRAP '+!dustem_version.version+' (EXTINCTION)';, wback='grey';,wobject=winobj_m
ed831104   Ilyes Choubani   no obj plotting
583
    
ed831104   Ilyes Choubani   no obj plotting
584
    
55275be6   Ilyes Choubani   allowing no_obj p...
585
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    ;Plotting model string (legend)
    xxpos = 0.015
    yypos = 0.97
    ;Plotting Hydrogen column density string (legend)
    cgtext, xxpos, yypos,'Model : '+!dustem_model,color=0,/normal,charsize = 1.2;,/addcmd ;& cmdind_m+=1 This is the first command in the window
    yypos = 0.95
    cgtext, xxpos, yypos,textoidl('N_{H}')+textoidl(' (H/cm^2) : ')+strmid(string(*!dustem_HCD,format='(1E10.2)'),2),color=0,/normal,charsize = 1.2
ed831104   Ilyes Choubani   no obj plotting
592
    
55275be6   Ilyes Choubani   allowing no_obj p...
593
    ;Plotting of the number of iterations completed by the fitter
ed831104   Ilyes Choubani   no obj plotting
594
    
55275be6   Ilyes Choubani   allowing no_obj p...
595
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    ;Plotting of the number of runs
    ;Getting the width of the unrefreshed string
    widthtot=0.
    ;cgtext, xxpos, yypos,'Runs : ',color=0,/normal,charsize=-1,width=thiswidth,/addcmd & cmdind_x+=1
    cgtext, xxpos, yypos,'Iteration : ',color=0,/normal,charsize=-1,width=thiswidth
    widthtext = thiswidth
    widthtot+= thiswidth ;fixed width
    
    ;Getting the width of the refreshed string
    cgtext, xxpos, yypos,strtrim(!dustem_iter.act,2),color=0,/normal,charsize=-1,width=thiswidth
    widthtot+= thiswidth;varying width        
    
    ;These two lines will also have to      be modified when plotting the refreshed values
    xxpos = 0.015 ;1.0 - widthtot - 0.03
    yypos = 0.015
    
    ;Displaying fixed part
    ;cgtext, xxpos, yypos,'Runs : ',color=0,/normal,charsize = 1.35,/addcmd & cmdind_x+=1
    cgtext, xxpos, yypos,'Iteration : ',color=0,/normal,charsize = 1.35
    ;Displaying refreshed part (first run . This is the command that will be replaced)
    cgtext, xxpos + widthtext + 0.015 , yypos,strtrim(!dustem_iter.act,2),color=0,/normal,charsize = 1.0
    ;saving the command id to replace it
    
    
    ;plotting of (mostly) fixed data for rchi2
    ;Since the format of the strings is specified, the length/width of the string in thex direction is fixed. 
    
    
    ;Getting the width of the unrefreshed string
    widthtot=0.
    cgtext, xxpos, yypos,textoidl('\chi^{2} : '),color=0,/normal,charsize=-1,width=thiswidth
    widthtext = thiswidth
    widthtot+= thiswidth ;fixed width
    
    ;Getting the width of the refresh.ed string
    cgtext, xxpos, yypos,strtrim(string(chi2,format=frmt2),2),color=0,/normal,charsize=-1,width=thiswidth
    widthtot+= thiswidth;varying width        
    ;saving the command string width to replace it
    
    
    xxpos = 1.0 - widthtot - 0.03
    
    yypos = 0.97
    
    ;Displaying fixed part
    cgtext, xxpos, yypos,textoidl('\chi^{2} : '),color=0,/normal,charsize = 1.0
    ;Displaying refreshed part (first run . This is the command that will be replaced)
    
    cgtext, xxpos + widthtext , yypos,strtrim(string(chi2,format=frmt2),2),color=0,/normal,charsize = 1.0
    
    ;saving the command id to replace it
      
    
    
    ;plotting of (mostly) fixed data for rchi2
    
    ;Getting the width of the unrefreshed string
    widthtot=0.
    cgtext, xxpos, yypos,textoidl('r_{\chi^{2}} : '),color=0,/normal,charsize=-1,width=thiswidth
    widthtext = thiswidth
    widthtot+= thiswidth ;fixed width
    ;!dustemcgwin_ncmds.rchi2.txtwdth1 = thiswidth
    ;Getting the width of the refreshed string
    cgtext, xxpos, yypos,strtrim(string(rchi2,format=frmt2),2),color=0,/normal,charsize=-1,width=thiswidth
    widthtot+= thiswidth;varying width        
    
    ;These two lines will also have to      be modified when plotting the refreshed values
    xxpos = 1.0 - widthtot - 0.03
    yypos = 0.95
    
    ;Displaying fixed part
    cgtext, xxpos, yypos,textoidl('r_{\chi^{2}} : '),color=0,/normal,charsize = 1.35
    ;Displaying refreshed part (first run . This is the command that will be replaced)
    cgtext, xxpos + widthtext , yypos,strtrim(string(rchi2,format=frmt2),2),color=0,/normal,charsize = 1.0
    ;saving the command id to replace it
    
    
    ;Plotting of the title of the dashboard (plot(s))
    
    ;NB: JP is right, the user should be able to set the entirety of the title.
    ;Make this block aware of the saving of the data  (from the fits table)
    
    
    ;Getting the width of the title 
b8019d76   Ilyes Choubani   replacing _extra....
679
    tit=!dustem_plot_range.title_x;
55275be6   Ilyes Choubani   allowing no_obj p...
680
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    cgtext, 0.3, 0.95,tit+' (RUNNING)',color=0,/normal,charsize=-1,width=thiswidth
    widthtot = thiswidth
    xxpos = (1 - thiswidth)/2
    yypos = 0.96
    
    cgtext, 0.3, 0.95,tit,color=0,/normal,charsize=-1,width=thiswidth
      
    cgtext, xxpos, yypos,tit,color=0,/normal,charsize = 1.6
    xxpos+=thiswidth*1.6
    cgtext, xxpos, yypos,' (RUNNING)',color=0,/normal,charsize = 1.6
    
bffa7018   Ilyes Choubani   update
692
   
ed831104   Ilyes Choubani   no obj plotting
693
    if !run_pol then begin
bffa7018   Ilyes Choubani   update
694
       
ed831104   Ilyes Choubani   no obj plotting
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        ;position arrays for plot and normalized graph
        
        ;THIS IS HARD-CODED IN A VERY SILLY WAY
        
        p_ext = [0.05,0.67,0.475,0.90]
        p_pext = [0.525,0.67,0.95,0.90]
        p_spext = [0.05,0.375,0.475,0.575] ; Should we plot this? tau_polext/tau_ext_tot. YES FOR NOW...
        p_psiext = [0.525,0.375,0.95,0.575]
        p_qext = [0.05,0.12,0.475,0.35]  
        p_uext = [0.525,0.12,0.95,0.35]
        
        np_ext = [0.05,0.60,0.475,0.67]
        np_pext = [0.525,0.60,0.95,0.67]
        np_qext = [0.05,0.05,0.475,0.12] 
        np_uext = [0.525,0.05,0.95,0.12]
        
        p_ext[1]+= 0.0125 & p_ext[3]+= 0.0125 
        p_pext[1]+= 0.0125 & p_pext[3]+= 0.0125
        p_spext[1]+= 0.0125 & p_spext[3]+= 0.0125
        p_psiext[1]+= 0.0125 & p_psiext[3]+= 0.0125
        p_qext[1]+= 0.0125 & p_qext[3]+= 0.0125
        p_uext[1]+= 0.0125 & p_uext[3]+= 0.0125
        
        np_ext[1]+= 0.0125 & np_ext[3]+= 0.0125 
        np_pext[1]+= 0.0125 & np_pext[3]+= 0.0125
        np_qext[1]+= 0.0125 & np_qext[3]+= 0.0125
        np_uext[1]+= 0.0125 & np_uext[3]+= 0.0125
        
        
          
    endif else begin
        p_ext  = [0.07,0.30,0.97,0.85]
        np_ext = [0.07,0.10,0.97,0.30]
    
    endelse

    ;Plotting of sed data axes (whether or not data is present)
    plotsym,0,/fill ;you might need to execute this again. hmm...


    ;This is not the right test the user might want to show the prediction for sed and fit the stokes parameters
    if ~test_ext then begin ; EXT data is not present (For completeness) # This is only valid when !run_pol=1
        
bffa7018   Ilyes Choubani   update
738
739
        dustem_plot_dataset, st, dataset='EXT', /nodata, position=p_ext, _extra=_extra 
        dustem_plot_dataset, st, dataset='EXT', /nodata, /norm, position=np_ext, _extra=_extra
ed831104   Ilyes Choubani   no obj plotting
740
741

    endif else begin ;EXT exists
ed831104   Ilyes Choubani   no obj plotting
742
      
bffa7018   Ilyes Choubani   update
743
744
        dustem_plot_dataset, st, dataset='EXT', position=p_ext, _extra=_extra
        dustem_plot_dataset, st, dustem_ext,EXT_spec, dataset='EXT', /refresh ,position=p_ext, _extra=_extra 
55275be6   Ilyes Choubani   allowing no_obj p...
745
        
bffa7018   Ilyes Choubani   update
746
        dustem_plot_dataset, st, dataset='EXT',/norm, position=np_ext, _extra=_extra ;I think nodata can also be used too
55275be6   Ilyes Choubani   allowing no_obj p...
747
        
bffa7018   Ilyes Choubani   update
748
        dustem_plot_dataset, st, dustem_ext,EXT_spec, dataset='EXT', /norm, /refresh,position=np_ext, _extra=_extra 
55275be6   Ilyes Choubani   allowing no_obj p...
749
               
ed831104   Ilyes Choubani   no obj plotting
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    endelse
    
    
      if !run_pol then begin 
        
        if ~test_qext then begin ;Qext is not present
            
bffa7018   Ilyes Choubani   update
757
758
            dustem_plot_dataset, st, dataset='QEXT', /nodata, position=p_qext, _extra=_extra 
            dustem_plot_dataset, st, dataset='QEXT', /nodata, /norm, position=np_qext, _extra=_extra 
ed831104   Ilyes Choubani   no obj plotting
759
760
        
        endif else begin ;Qext data is present
55275be6   Ilyes Choubani   allowing no_obj p...
761
762
                    
            ;Plotting of postive values if they exist (if hidden data is present it is plotted if not an empty plot is rendered)
bffa7018   Ilyes Choubani   update
763
            dustem_plot_dataset, st, dataset='QEXT', position=p_qext,/positive_only, _extra=_extra 
55275be6   Ilyes Choubani   allowing no_obj p...
764
            ;Refreshing the positive_only plot ONLY if there is data. If not do nothing
ed831104   Ilyes Choubani   no obj plotting
765
            
bffa7018   Ilyes Choubani   update
766
            dustem_plot_dataset, st, dustem_qext,QEXT_spec, dataset='QEXT',/positive_only, /refresh ,position=p_qext, _extra=_extra 
55275be6   Ilyes Choubani   allowing no_obj p...
767
            
bffa7018   Ilyes Choubani   update
768
            dustem_plot_dataset, st, dataset='QEXT', position=p_qext,/negative_only, _extra=_extra
55275be6   Ilyes Choubani   allowing no_obj p...
769
            ;Refreshing the negative_only plot ONLY if there is data. If not do nothing
bffa7018   Ilyes Choubani   update
770
            dustem_plot_dataset, st, dustem_qext,QEXT_spec,dataset='QEXT',/negative_only, /refresh ,position=p_qext, _extra=_extra
55275be6   Ilyes Choubani   allowing no_obj p...
771
        
bffa7018   Ilyes Choubani   update
772
773
            dustem_plot_dataset, st, dataset='QEXT',/norm, position=np_qext, _extra=_extra ;I think nodata can also be uqsed too
            dustem_plot_dataset, st, dustem_qext,QEXT_spec,dataset='QEXT', /norm, /refresh,position=np_qext, _extra=_extra
55275be6   Ilyes Choubani   allowing no_obj p...
774

ed831104   Ilyes Choubani   no obj plotting
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      endelse
          ;stop        
        if ~test_uext then begin ;uext is not present
            
bffa7018   Ilyes Choubani   update
779
780
            dustem_plot_dataset, st, dataset='UEXT', /nodata, position=p_uext, _extra=_extra
            dustem_plot_dataset, st, dataset='UEXT', /nodata, /norm, position=np_uext, _extra=_extra 
ed831104   Ilyes Choubani   no obj plotting
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        endif else begin ;uext data is present
55275be6   Ilyes Choubani   allowing no_obj p...
783
            
ed831104   Ilyes Choubani   no obj plotting
784
785
            ;stop
                ;Plotting of postive values if they exist (if hidden data is present it is plotted if not an empty plot is rendred)
bffa7018   Ilyes Choubani   update
786
                dustem_plot_dataset, st, dataset='UEXT', position=p_uext,/positive_only, _extra=_extra
ed831104   Ilyes Choubani   no obj plotting
787
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                ;Refreshing the positive_only plot ONLY if there is data. If not do nothing
bffa7018   Ilyes Choubani   update
789
                dustem_plot_dataset, st, dustem_uext,UEXT_spec, dataset='UEXT',/positive_only, /refresh ,position=p_uext, _extra=_extra 
ed831104   Ilyes Choubani   no obj plotting
790
                
55275be6   Ilyes Choubani   allowing no_obj p...
791
              
bffa7018   Ilyes Choubani   update
792
                dustem_plot_dataset, st, dataset='UEXT', position=p_uext,/negative_only, _extra=_extra 
ed831104   Ilyes Choubani   no obj plotting
793
                ;Refreshing the negative_only plot ONLY if there is data. If not do nothing
bffa7018   Ilyes Choubani   update
794
                dustem_plot_dataset, st, dustem_uext,UEXT_spec, dataset='UEXT',/negative_only, /refresh ,position=p_uext, _extra=_extra
ed831104   Ilyes Choubani   no obj plotting
795
                
ed831104   Ilyes Choubani   no obj plotting
796
                
bffa7018   Ilyes Choubani   update
797
798
                dustem_plot_dataset, st, dataset='UEXT',/norm, position=np_uext, _extra=_extra ;I think nodata can also be uused too
                dustem_plot_dataset, st, dustem_uext,UEXT_spec, dataset='UEXT', /norm, /refresh,position=np_uext, _extra=_extra 
55275be6   Ilyes Choubani   allowing no_obj p...
799
800
            
                      
ed831104   Ilyes Choubani   no obj plotting
801
802
803
804
      endelse
      
      if ~test_psi_ext then begin ; psi_ext data is not present (For completeness) # This is only valid when !run_pol=1
          
bffa7018   Ilyes Choubani   update
805
          dustem_plot_dataset, st, dataset='PSI_EXT', /nodata, position=p_psiext, _extra=_extra  
ed831104   Ilyes Choubani   no obj plotting
806
807
808

      endif else begin ;psi_ext exists

bffa7018   Ilyes Choubani   update
809
810
              dustem_plot_dataset, st, dataset='psi_ext', position=p_psiext, _extra=_extra 
              dustem_plot_dataset, st, dustem_psi_ext,PSIEXT_spec, dataset='psi_ext', /refresh ,position=p_psiext, _extra=_extra 
55275be6   Ilyes Choubani   allowing no_obj p...
811
              
ed831104   Ilyes Choubani   no obj plotting
812
              
ed831104   Ilyes Choubani   no obj plotting
813
814
815
816
817
      endelse
        
      
      if ~test_polext then begin ; polext data is not present (For completeness) # This is only valid when !run_pol=1
          
bffa7018   Ilyes Choubani   update
818
819
          dustem_plot_dataset, st, dataset='polext', /nodata, position=p_pext, _extra=_extra 
          dustem_plot_dataset, st, dataset='polext', /nodata, /norm, position=np_pext, _extra=_extra 
ed831104   Ilyes Choubani   no obj plotting
820
821
822

      endif else begin ;polext exists

bffa7018   Ilyes Choubani   update
823
824
        dustem_plot_dataset, st, dataset='polext', position=p_pext, _extra=_extra 
        dustem_plot_dataset, st, dustem_polext,POLEXT_spec, dataset='polext', /refresh ,position=p_pext, _extra=_extra 
55275be6   Ilyes Choubani   allowing no_obj p...
825
         
bffa7018   Ilyes Choubani   update
826
827
        dustem_plot_dataset, st, dataset='polext',/norm, position=np_pext, _extra=_extra  ;I think nodata can also be upolsed too
        dustem_plot_dataset, st, dustem_polext,POLEXT_spec, dataset='polext', /norm, /refresh,position=np_pext, _extra=_extra 
55275be6   Ilyes Choubani   allowing no_obj p...
828
        
ed831104   Ilyes Choubani   no obj plotting
829
830
831
832
833
      endelse      
      
      
      if ~test_fpolext then begin ; fpolext data is not present (For completeness) # This is only valid when !run_pol=1
          
bffa7018   Ilyes Choubani   update
834
          dustem_plot_dataset, st, dataset='fpolext', /nodata, position=p_spext, _extra=_extra  
55275be6   Ilyes Choubani   allowing no_obj p...
835
          
ed831104   Ilyes Choubani   no obj plotting
836
837
838

      endif else begin ;fpolext exists

55275be6   Ilyes Choubani   allowing no_obj p...
839
        
bffa7018   Ilyes Choubani   update
840
841
        dustem_plot_dataset, st, dataset='fpolext', position=p_spext, _extra=_extra 
        dustem_plot_dataset, st, dustem_fpolext,SPEXT_spec,EXT_spec, dataset='fpolext', /refresh ,position=p_spext, _extra=_extra
55275be6   Ilyes Choubani   allowing no_obj p...
842

ed831104   Ilyes Choubani   no obj plotting
843

ed831104   Ilyes Choubani   no obj plotting
844
845
846
847
848
      endelse  
      

    ENDIF
        
ed831104   Ilyes Choubani   no obj plotting
849
850
851
852
853
     
          
ENDIF 


55275be6   Ilyes Choubani   allowing no_obj p...
854
855
;PLOTTING OF THE PARAMETERS
window,2,xpos=param_wxpos,ypos=param_wypos,xsize=param_wxsize,ysize=param_wysize,title='DUSTEMWRAP '+!dustem_version.version+' (PARAMETERS)' ; keeping the same y dimension of the emission/extinction plot? 
f9089dc2   Ilyes Choubani   implementing the ...
856
857
dustem_plot_dataset, st, p_dim, errors,dataset='PARAMETERS',_extra=_extra ;& cmdind_prms+=1
dustem_plot_dataset, st,  p_dim,errors,dataset='PARAMETERS',/refresh, _extra=_extra 
ed831104   Ilyes Choubani   no obj plotting
858

55275be6   Ilyes Choubani   allowing no_obj p...
859
;PLOTTING OF THE PLUGINS
ed831104   Ilyes Choubani   no obj plotting
860
IF (tag_names(*!dustem_plugin))(0) NE 'NONE' THEN BEGIN  
55275be6   Ilyes Choubani   allowing no_obj p...
861
862
    
    window,3,xpos=plugin_wxpos,ypos=plugin_wypos,xsize=plugin_wxsize,ysize=plugin_wysize,title='DUSTEMWRAP '+!dustem_version.version+' (PLUGINS)' ; keeping the same y dimension of the emission/extinction plot? 
f9089dc2   Ilyes Choubani   implementing the ...
863
864
    dustem_plot_dataset, st, p_dim, errors,dataset='PLUGINS',_extra=_extra ;& cmdind_prms+=1
    dustem_plot_dataset, st, p_dim, errors,dataset='PLUGINS', /refresh , winid=winid_plgns, _extra=_extra 
ed831104   Ilyes Choubani   no obj plotting
865
866
867
868
869
870
     
ENDIF

the_end:

END