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src/idl/dustemwrap_plot_noobj.pro 37.4 KB
ed831104   Ilyes Choubani   no obj plotting
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PRO dustemwrap_plot_noobj,p_dim,st, $
                    dustem_sed,SED_spec, $
                    dustem_qsed,Q_spec, $
                    dustem_used,U_spec, $
                    dustem_polsed,P_spec, $
                    dustem_polfrac,SP_spec, $
                    dustem_psi_em,PSI_spec, $
                    dustem_ext,EXT_spec, $
                    dustem_qext,QEXT_spec, $
                    dustem_uext,UEXT_spec, $
                    dustem_polext,POLEXT_spec, $
                    dustem_fpolext,SPEXT_spec, $
                    dustem_psi_ext,PSIEXT_spec, $
                    _extra=_extra,help=help

;+
; NAME:
;    dustemwrap_plot
; PURPOSE:
;    plots dustemwrap observed sed, predicted sed, predicted spectra for total Intensity, polarization in emission and extinction
; CATEGORY:
;    DustEMWrap
; CALLING SEQUENCE:
;    dustemwrap_plot,p_dim,st,dustem_sed,SED_spec,dustem_qsed,Q_spec,dustem_used,U_spec,dustem_polsed,P_spec,dustem_polfrac,SP_spec,dustem_psi_em,PSI_spec,dustem_ext,EXT_spec,dustem_qext,QEXT_spec,dustem_uext,UEXT_spec,dustem_polext,POLEXT_spec,dustem_fpolext,SPEXT_spec,dustem_psi_ext,PSIEXT_spec,_extra=_extra 
; INPUTS:
;    p_dim
; OPTIONAL INPUT PARAMETERS:
;    st
;    dustem_sed
;    dustem_qsed
;    dustem_used
;    dustem_polsed
;    dustem_polfrac
;    dustem_psi_em
;    dustem_ext
;    dustem_qext
;    dustem_uext
;    dustem_polext
;    dustem_fpolext
;    dustem_psi_ext
; OUTPUTS:
;    dustem_sed
;    dustem_qsed
;    dustem_used
;    dustem_polsed
;    dustem_polfrac
;    dustem_psi_em
;    dustem_ext
;    dustem_qext
;    dustem_uext
;    dustem_polext
;    dustem_fpolext
;    dustem_psi_ext
;    SED_spec
;    Q_spec
;    U_spec
;    P_spec
;    SP_spec
;    PSI_spec
;    EXT_spec
;    QEXT_spec
;    UEXT_spec
;    POLEXT_spec
;    SPEXT_spec
;    PSIEXT_spec
; OPTIONAL OUTPUT PARAMETERS:
;    

; ACCEPTED KEY-WORDS:
;    help
; COMMON BLOCKS:
;    None
; SIDE EFFECTS:
;    Does a plot
; RESTRICTIONS:
;    The DustEM fortran code must be installed
;    The DustEMWrap IDL code must be installed
; PROCEDURES AND SUBROUTINES USED:
;
; EXAMPLES
;    
; MODIFICATION HISTORY:
;    Written by Ilyes Choubani
;    Evolution details on the DustEMWrap gitlab.
;-

IF keyword_set(help) THEN BEGIN
  doc_library,'dustemwrap_plot'
  goto,the_end
END

;This is also necessary for the plotting of the results of the fit (Last iteration) 
IF not keyword_set(st) THEN BEGIN
  ;Activation of the plugins is needed because of the plotting of the total emission model that includes them. 
  dustem_activate_plugins,p_dim/(*(*!dustem_fit).param_init_values),st  ; 0/0 division case?
  
  ;# Emission
  ;if isa(!dustem_data.sed) then begin ;using !dustem_data instead of !dustem_show because in this release the user is compelled to fit IQU whether in M or X
  if not keyword_set(dustem_sed) and isa((*!dustem_data).sed) then begin ;better test?
  
      dustem_sed = dustem_compute_sed(p_dim,st,SED_spec)
      
      if !run_pol && !run_lin then begin
          
          dustem_polsed = dustem_compute_polsed(p_dim,st,P_spec,SP_spec,dustem_polfrac)
          toto = dustem_compute_stokes(p_dim,st,dustem_qsed,dustem_used,Q_spec,U_spec,PSI_spec,dustem_psi_em) 
        
          
      endif         
  endif
  
  ;# Extinction
;   if isa(!dustem_data.ext) then begin
  if not keyword_set(dustem_ext) and isa((*!dustem_data).ext) then begin
      dustem_ext = dustem_compute_ext(p_dim,st,EXT_spec)
      
      if !run_pol && !run_lin then begin
          
          dustem_polext = dustem_compute_polext(p_dim,st,POLEXT_spec,SPEXT_spec,dustem_fpolext)
          toto = dustem_compute_stokext(p_dim,st,dustem_qext,dustem_uext,QEXT_spec,UEXT_spec,PSIEXT_spec,dustem_psi_ext) 
          
      endif
  endif
  
ENDIF ELSE BEGIN ;st is provided 
    ;stop

    ;# Emission
    ;if isa(!dustem_data.sed) then begin
    if not keyword_set(dustem_sed) and isa((*!dustem_data).sed) then begin
        dustem_sed = dustem_compute_sed(p_dim,st,SED_spec)
        
        if !run_pol && !run_lin then begin
            
            dustem_polsed = dustem_compute_polsed(p_dim,st,P_spec,SP_spec,dustem_polfrac)
            toto = dustem_compute_stokes(p_dim,st,dustem_qsed,dustem_used,Q_spec,U_spec,PSI_spec,dustem_psi_em) 
            ;stop    
        endif
    endif
    
    ;# Extinction
    ;if isa(!dustem_data.ext) then begin
    
    if not keyword_set(dustem_ext) and isa((*!dustem_data).ext) then begin
    
        dustem_ext = dustem_compute_ext(p_dim,st,EXT_spec)
        
        if !run_pol && !run_lin then begin
            
            dustem_polext = dustem_compute_polext(p_dim,st,POLEXT_spec,SPEXT_spec,dustem_fpolext)
            toto = dustem_compute_stokext(p_dim,st,dustem_qext,dustem_uext,QEXT_spec,UEXT_spec,PSIEXT_spec,dustem_psi_ext) 
            
        endif
    endif
    
ENDELSE 

;help,(*!dustem_fit).CURRENT_PARAM_VALUES   ;This is not currently filled up ...



;LIST OF TESTS THAT NEED TO BE RAN SO THAT THE PLOTTING OF THE MODEL SPECTRA OCCURS

test_sed = isa((*!dustem_show).sed)
test_ext = isa((*!dustem_show).ext)
if !run_pol then begin
    test_polext = isa((*!dustem_show).polext)
    test_polsed = isa((*!dustem_show).polsed)
    test_polfrac = isa((*!dustem_show).polfrac)
    test_fpolext = isa((*!dustem_show).fpolext)
    test_psi_em = isa((*!dustem_show).psi_em)
    test_psi_ext = isa((*!dustem_show).psi_ext)
    test_qsed = isa((*!dustem_show).qsed)
    test_used = isa((*!dustem_show).used)
    test_qext = isa((*!dustem_show).qext)
    test_uext = isa((*!dustem_show).uext)
    test_m = test_sed or test_polsed or test_polfrac or test_qsed or test_used or test_psi_em
    test_x = test_ext or test_polext or test_fpolext or test_qext or test_uext or test_psi_ext
endif else begin
    test_m = test_sed 
    test_x = test_ext 
endelse

;testing on the fitting of emission vs extinction data

n_plgns = n_tags(*!dustem_plugin)

frmt0='(A36)'
frmt1='(1E10.2)'
frmt2='(10F10.2)'

;Instead of setting the extra tags for plotting in dustemcgwin, we'll place them in this (parent) procedure. 
tgnms_extra = tag_names(_extra)

; 
; 
; 
; ; ;Now testing on what is in the _extra structure. 
; IF test_m and ~test_x BEGIN ;EMISSION ALONE 
;     
; 
; 
;     IF !run_pol THEN BEGIN ;SEVERAL DATA SETS: THE DASHBOARD
;         
;         ;BECAUSE OF THE LATOUT OF THE DASHBOARD
;         ;U,PSI,P are forced to have the same x axis (this is untrue for the y range). Note that the y range of PSI is by default [-90,90] but the possibility to modify it (ie zoom-in, zoom-out, and move the curve) is possible.          
;         ;Q,p,I are forced to have the same x axis (this is untrue for the y range).
;         
;         
;         ;#Test on the presence of x ranges for U,PSI and P:
;         
;         ;If only one of them is present, apply the x range to all three plots
;         ;If not 
;         
;         ;Keyword use is a tiny bit flexible (ie: xr_sed, xrange_sed)
;         
;         ;We need to locate the underscore and use it in the test. If it's not present (in all tags in the _extra structure) we'll know that only xr or xrange has been used. This can also mean that xr hasn't been specified. 
;         
;         
;         
;         ;NB: if a 
;         
;         
;         
;         
;         IF 
;         
;         
;         
;         
;         
;         
;           
;         
;         
;         
;         
;                 
;                             
;                         
;             
;                 
;         
;     ENDIF ELSE BEGIN ;ONE DATA SET : SED
;         
;             
;         
;                 
;         
;         
;         
;     ENDELSE 
; 
; 
; 
; 
; 
;     
;     
; ENDIF
; 
; 
; IF test_x and ~test_m THEN BEGIN ;EXTINCTION ALONE
;     
;     
;     
;     IF !run_pol THEN BEGIN ;SEVERAL DATA SETS: THE DASHBOARD
;         
;         
;         
;         
;     ENDIF ELSE BEGIN ;ONE DATA SET : EXT
; 
; 
; 
; 
; 
; ENDELSE 
; 
; 
; 
;     
;     
;     
;     
; ENDIF
; 
; 
; 
; IF test_m and test_x BEGIN ;EMISSION and EXTINCTION 
;     
; 
; 
; 
;     
;     IF !run_pol THEN BEGIN ;SEVERAL DATA SETS: THE SED DASHBOARD & EXT DASHBOARD 
;         
;         
;         
;         
;     ENDIF ELSE BEGIN ;TWO DATA SETS : EXT AND SED
;     
;         
;     
;     
;     
;     ENDELSE 
; 
; 
; 
;         
;         
;         
;         
;         
;         
; ENDIF
; 
; 
; 










;I have decided to keep track of the command index manually as I did not find any command online that does this.
cmdind_m = 0 ;for emission
cmdind_x = 0 ;for extinction
;trying to do the same thing for parameters and plugins
cmdind_prms = 0 ;for parameters
cmdind_plgns = 0 ;for plugins

;ADDING PLUGIN(S) TO SPECTRUM----------------

;these following indices will be used to change the keep the same information in the _extra structure
;this is an initial solution until I finish coding the _extra-filtering procedure. 

iswinsed = !dustemcgwin_id.sed EQ la_undef()
iswinext = !dustemcgwin_id.ext EQ la_undef()

;trying to do the same thing for parameters and plugins
;But we need to know if the extinction or the emission mode is on.
;so the use of ths pointer will be different than the others
iswinprms = !dustemcgwin_id.prms EQ la_undef()
iswinplgns = !dustemcgwin_id.plgns EQ la_undef()


;plotstrct = !p
degtorad = !pi/180 ;factor that the arctan will be devided by in order to have an axis in degrees. Talk to JP maybe he wants angle in radians.

;I think I will test over the presence of the errors because they are not computed at that point.

;errors = ((*!dustem_fit).current_param_errors)
if isa((*!dustem_fit).current_param_errors) then begin
    errors = (*(*!dustem_fit).current_param_errors)
endif else begin
    errors = (*(*!dustem_fit).param_init_values)*0. 
ENDELSE 

if isa((*!dustem_fit).chi2) then begin
    chi2 = (*!dustem_fit).chi2    
endif else begin
    chi2 = la_undef()
endelse 

if isa((*!dustem_fit).rchi2) then begin
    rchi2 = (*!dustem_fit).rchi2    
endif else begin
    rchi2 = la_undef()
endelse 


if isa(p_dim) then res = p_dim  else res = (*(*!dustem_fit).param_init_values)*0.
 


;==== These are arameters for window positioning
if !run_pol then BEGIN
    wdelta_x=60
    main_wxsize=910
    main_wysize=658

    param_wxpos=main_wxsize+wdelta_x
    param_wypos=15
    param_wxsize=350
    param_wysize=200

    plugin_wxpos=main_wxsize+wdelta_x
    plugin_wypos=300
    plugin_wxsize=350
    plugin_wysize=200
ENDIF ELSE BEGIN
    wdelta_x=60
    main_wxsize=640  ;default of cgwindow
    main_wysize=512  ;default of cgwindow

    param_wxpos=main_wxsize+wdelta_x;700
    param_wypos=15
    param_wxsize=350
    param_wysize=200

    plugin_wxpos=main_wxsize+wdelta_x;700
    plugin_wypos=300
    plugin_wxsize=350
    plugin_wysize=200
ENDELSE

if test_m then begin
    ;Generating emission window and saving window ID
    
    ;if iswinsed then begin    ;This is when the cgwindow does not exist already
        
    TVLCT, 255, 255, 255, 254 ; White color
    !P.Color = 253
    !P.Background = 254
    
    if !run_pol then window,0, xsize=main_wxsize,ysize=main_wysize,title='DUSTEMWRAP '+!dustem_version.version+' (EMISSION)',xpos=0,ypos=0 else window, 0,xsize=main_wxsize,ysize=main_wysize,title='DUSTEMWRAP '+!dustem_version.version+' (EMISSION)',xpos=0, ypos=0;, wback='grey';,wobject=winobj_m
    
    ;Plotting model string (legend)
    xxpos = 0.015
    yypos = 0.97
    ;Plotting Hydrogen column density string (legend)
    cgtext, xxpos, yypos,'Model : '+!dustem_model,color=0,/normal,charsize = 1.2;,/addcmd ;& cmdind_m+=1 This is the first command in the window
    yypos = 0.95
    cgtext, xxpos, yypos,textoidl('N_{H}')+textoidl(' (H/cm^2) : ')+strmid(string(*!dustem_HCD,format='(1E10.2)'),2),color=0,/normal,charsize = 1.2;,/addcmd & cmdind_m+=1
    
    ;Plotting of the number of iterations completed by the fitter
    
    ;Plotting of the number of runs
    ;Getting the width of the unrefreshed string
    widthtot=0.
    ;cgtext, xxpos, yypos,'Runs : ',color=0,/normal,charsize=-1,width=thiswidth,/addcmd & cmdind_m+=1
    cgtext, xxpos, yypos,'Iteration : ',color=0,/normal,charsize=-1,width=thiswidth 
    widthtext = thiswidth
    widthtot+= thiswidth ;fixed width
    !dustemcgwin_ncmds.runs.txtwdth = thiswidth
    
    ;Getting the width of the refreshed string
    cgtext, xxpos, yypos,strtrim(!dustem_iter.act,2),color=0,/normal,charsize=-1,width=thiswidth 
    widthtot+= thiswidth;varying width        
    
    ;These two lines will also have to      be modified when plotting the refreshed values
    xxpos = 0.015 ;1.0 - widthtot - 0.03
    yypos = 0.015
    
    ;Displaying fixed part
    ;cgtext, xxpos, yypos,'Runs : ',color=0,/normal,charsize = 1.35,/addcmd & cmdind_m+=1
    cgtext, xxpos, yypos,'Iteration : ',color=0,/normal,charsize = 1.35 
    ;Displaying refreshed part (first run . This is the command that will be replaced)
    cgtext, xxpos + widthtext + 0.015 , yypos,strtrim(!dustem_iter.act,2),color=0,/normal,charsize = 1.0 
    
    ;plotting of (mostly) fixed data for rchi2
    ;Since the format of the strings is specified, the length/width of the string in thex direction is fixed. 
    
    
    ;Getting the width of the unrefreshed string
    widthtot=0.
    cgtext, xxpos, yypos,textoidl('\chi^{2} : '),color=0,/normal,charsize=-1,width=thiswidth 
    widthtext = thiswidth
    widthtot+= thiswidth ;fixed width
    
    ;Getting the width of the refresh.ed string
    cgtext, xxpos, yypos,strtrim(string(chi2,format=frmt2),2),color=0,/normal,charsize=-1,width=thiswidth 
    widthtot+= thiswidth;varying width        
    ;saving the command string width to replace it
    
    xxpos = 1.0 - widthtot - 0.03
    
    yypos = 0.97
    
    ;Displaying fixed part
    cgtext, xxpos, yypos,textoidl('\chi^{2} : '),color=0,/normal,charsize = 1.0 
    ;Displaying refreshed part (first run . This is the command that will be replaced)
    
    cgtext, xxpos + widthtext , yypos,strtrim(string(chi2,format=frmt2),2),color=0,/normal,charsize = 1.0 
   
    
    ;plotting of (mostly) fixed data for rchi2
    
    ;Getting the width of the unrefreshed string
    widthtot=0.
    cgtext, xxpos, yypos,textoidl('r_{\chi^{2}} : '),color=0,/normal,charsize=-1,width=thiswidth 
    widthtext = thiswidth
    widthtot+= thiswidth ;fixed width
    ;!dustemcgwin_ncmds.rchi2.txtwdth1 = thiswidth
    ;Getting the width of the refreshed string
    cgtext, xxpos, yypos,strtrim(string(rchi2,format=frmt2),2),color=0,/normal,charsize=-1,width=thiswidth 
    widthtot+= thiswidth;varying width        
    
    
    ;These two lines will also have to      be modified when plotting the refreshed values
    xxpos = 1.0 - widthtot - 0.03
    yypos = 0.95
    
    ;Displaying fixed part
    cgtext, xxpos, yypos,textoidl('r_{\chi^{2}} : '),color=0,/normal,charsize = 1.35 
    ;Displaying refreshed part (first run . This is the command that will be replaced)
    cgtext, xxpos + widthtext , yypos,strtrim(string(rchi2,format=frmt2),2),color=0,/normal,charsize = 1.0 
    ;saving the command id to replace it 
    
    ;Plotting of the title of the dashboard (plot(s))
    
    
    ;NB issue here because the user can't modify the title after the dustem_mpfit_data call at the main procedure level (user proc)
    ;Getting the width of the title 
    tit=string(_extra.title);

    cgtext, 0.3, 0.95,tit+' (RUNNING)',color=0,/normal,charsize=-1,width=thiswidth 
    widthtot = thiswidth
    xxpos = (1 - thiswidth)/2
    yypos = 0.96
    
    cgtext, 0.3, 0.95,tit,color=0,/normal,charsize=-1,width=thiswidth 
     
    cgtext, xxpos, yypos,tit,color=0,/normal,charsize = 1.6 & cmdind_m+=1
    xxpos+=thiswidth*1.6
    cgtext, xxpos, yypos,' (RUNNING)',color=0,/normal,charsize = 1.6 
    
   if !run_pol then begin
        ;,wback='grey'
        
        ;position arrays for plot and normalized graph
        
        ;THIS IS HARD-CODED IN A VERY SILLY WAY
        
        p_sed = [0.05,0.67,0.475,0.90]
        p_psed = [0.525,0.67,0.95,0.90]
        p_spsed = [0.05,0.375,0.475,0.575]
        p_psised = [0.525,0.375,0.95,0.575]
        p_qsed = [0.05,0.12,0.475,0.35]  
        p_used = [0.525,0.12,0.95,0.35]
        
        np_sed = [0.05,0.60,0.475,0.67]
        np_psed = [0.525,0.60,0.95,0.67]
        np_qsed = [0.05,0.05,0.475,0.12] 
        np_used = [0.525,0.05,0.95,0.12]
        
        p_sed[1]+= 0.0125 & p_sed[3]+= 0.0125 
        p_psed[1]+= 0.0125 & p_psed[3]+= 0.0125
        p_spsed[1]+= 0.0125 & p_spsed[3]+= 0.0125
        p_psised[1]+= 0.0125 & p_psised[3]+= 0.0125
        p_qsed[1]+= 0.0125 & p_qsed[3]+= 0.0125
        p_used[1]+= 0.0125 & p_used[3]+= 0.0125
        
        np_sed[1]+= 0.0125 & np_sed[3]+= 0.0125 
        np_psed[1]+= 0.0125 & np_psed[3]+= 0.0125
        np_qsed[1]+= 0.0125 & np_qsed[3]+= 0.0125
        np_used[1]+= 0.0125 & np_used[3]+= 0.0125
        
        
          
    endif else begin
        p_sed  = [0.07,0.30,0.97,0.85]
        np_sed = [0.07,0.10,0.97,0.30]
    
    endelse

    ;Plotting of sed data axes (whether or not data is present)
    plotsym,0,/fill ;you might need to execute this again. hmm...
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;stop
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    ;This is not the right test the user might want to show the prediction for sed and fit the stokes parameters
    if ~test_sed then begin ; SED data is not present (For completeness) # This is only valid when !run_pol=1
        
        dustemcgwin_dataset, st, dataset='SED', /nodata, position=p_sed, _extra=_extra 
        dustemcgwin_dataset, st, dataset='SED', /nodata, /norm, position=np_sed, _extra=_extra 

    endif else begin ;SED exists
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           ;this plots the observed SED
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           dustemcgwin_dataset, st, dataset='SED', position=p_sed, _extra=_extra
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           ;this plots the predicted spectrum and predicted SED
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           dustemcgwin_dataset, st, dustem_sed,SED_spec, dataset='SED', /refresh ,position=p_sed, _extra=_extra 
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           ;This plots an empty normalized plot
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           dustemcgwin_dataset, st, dataset='SED',/norm, position=np_sed, _extra=_extra ;I think nodata can also be used too
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           ;This plots the normalized observed SED - best fit
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           dustemcgwin_dataset, st, dustem_sed,SED_spec, dataset='SED', /norm, /refresh,position=np_sed, _extra=_extra 
    endelse
    

      if !run_pol then begin ;then goto, end_m
        
        if ~test_qsed then begin ;Qsed is not present
            
            dustemcgwin_dataset, st, dataset='QSED', /nodata, position=p_qsed, _extra=_extra 
            dustemcgwin_dataset, st, dataset='QSED', /nodata, /norm, position=np_qsed, _extra=_extra 
        
        endif else begin ;Qsed data is present
                
            ;Plotting of postive values if they exist (if hidden data is present it is plotted if not an empty plot is rendered)
            dustemcgwin_dataset, st, dataset='QSED', position=p_qsed,/positive_only, _extra=_extra 
            ;Refreshing the positive_only plot ONLY if there is data. If not do nothing
            dustemcgwin_dataset, st, dustem_qsed,Q_spec, dataset='QSED',/positive_only, /refresh ,position=p_qsed, _extra=_extra 
            
             
            dustemcgwin_dataset, st, dataset='QSED', position=p_qsed, /addcmd,/negative_only, _extra=_extra 
            ;Refreshing the negative_only plot ONLY if there is data. If not do nothing
            dustemcgwin_dataset, st, dustem_qsed,Q_spec,dataset='QSED',/negative_only, /refresh ,position=p_qsed, _extra=_extra
            
            
            dustemcgwin_dataset, st, dataset='QSED',/norm, position=np_qsed, _extra=_extra  ;I think nodata can also be uqsed too
            dustemcgwin_dataset, st, dustem_qsed,Q_spec,dataset='QSED', /norm, /refresh,position=np_qsed, _extra=_extra 
               
      endelse
      
         
              
        if ~test_used then begin ;used is not present
            
            dustemcgwin_dataset, st, dataset='USED', /nodata, position=p_used, _extra=_extra 
            dustemcgwin_dataset, st, dataset='USED', /nodata, /norm, position=np_used, _extra=_extra 
            
        endif else begin ;used data is present
                       
            ;Plotting of postive values if they exist (if hidden data is present it is plotted if not an empty plot is rendred)
            dustemcgwin_dataset, st, dataset='USED', position=p_used,/positive_only, _extra=_extra 
            ;Refreshing the positive_only plot ONLY if there is data. If not do nothing
            dustemcgwin_dataset, st, dustem_used,U_spec, dataset='USED',/positive_only, /refresh ,position=p_used, _extra=_extra 
            
            dustemcgwin_dataset, st, dataset='USED', position=p_used, winid=winid_m,/negative_only, _extra=_extra 
            ;Refreshing the negative_only plot ONLY if there is data. If not do nothing
            dustemcgwin_dataset, st, dustem_used,U_spec, dataset='USED',/negative_only, /refresh ,position=p_used, _extra=_extra 
            
            dustemcgwin_dataset, st, dataset='USED',/norm, position=np_used, _extra=_extra ;I think nodata can also be uused too
            dustemcgwin_dataset, st, dustem_used,U_spec, dataset='USED', /norm, /refresh,position=np_used, _extra=_extra 
              
      endelse
      
      if ~test_psi_em then begin ; psi_em data is not present (For completeness) # This is only valid when !run_pol=1
          
          dustemcgwin_dataset, st, dataset='psi_em', /nodata, position=p_psised, /addcmd, winid=winid_m, _extra=_extra

      endif else begin ;psi_em exists
         
        dustemcgwin_dataset, st, dataset='psi_em', position=p_psised, _extra=_extra 
        dustemcgwin_dataset, st, dustem_psi_em,PSI_spec, dataset='psi_em', /refresh ,position=p_psised, _extra=_extra
                   
      endelse
        
      
      if ~test_polsed then begin ; polsed data is not present (For completeness) # This is only valid when !run_pol=1
          
          dustemcgwin_dataset, st, dataset='polsed', /nodata, position=p_psed, _extra=_extra 
          dustemcgwin_dataset, st, dataset='polsed', /nodata, /norm, position=np_psed, _extra=_extra

      endif else begin 
      
        dustemcgwin_dataset, st, dataset='polsed', position=p_psed, _extra=_extra
        dustemcgwin_dataset, st, dustem_polsed,P_spec, dataset='polsed', /refresh ,position=p_psed, _extra=_extra 
      
        dustemcgwin_dataset, st, dataset='polsed',/norm, position=np_psed, _extra=_extra ;I think nodata can also be upolsed too
        dustemcgwin_dataset, st, dustem_polsed,P_spec, dataset='polsed', /norm, /refresh,position=np_psed, _extra=_extra
            
      endelse      
      
      
      if ~test_polfrac then begin ; polfrac data is not present (For completeness) # This is only valid when !run_pol=1
          
          dustemcgwin_dataset, st, dataset='polfrac', /nodata, position=p_spsed, _extra=_extra

      endif else begin ;polfrac exists


         dustemcgwin_dataset, st, dataset='polfrac', position=p_spsed, _extra=_extra 
         dustemcgwin_dataset, st, dustem_polfrac,SP_spec,SED_spec, dataset='polfrac', /refresh ,position=p_spsed, _extra=_extra 

      endelse  
      

    ENDIF
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ENDIF 



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;stop
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if test_x then begin
    ;Generating extinction window and saving window ID
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    if !run_pol then window,1,xsize=main_wxsize,ysize=main_wysize,title='DUSTEMWRAP '+!dustem_version.version+' (EXTINCTION)' else window,1,xsize=main_wxsize,ysize=main_wysize,title='DUSTEMWRAP '+!dustem_version.version+' (EXTINCTION)';, wback='grey';,wobject=winobj_m
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    ;Plotting model string (legend)
    xxpos = 0.015
    yypos = 0.97
    ;Plotting Hydrogen column density string (legend)
    cgtext, xxpos, yypos,'Model : '+!dustem_model,color=0,/normal,charsize = 1.2;,/addcmd ;& cmdind_m+=1 This is the first command in the window
    yypos = 0.95
    cgtext, xxpos, yypos,textoidl('N_{H}')+textoidl(' (H/cm^2) : ')+strmid(string(*!dustem_HCD,format='(1E10.2)'),2),color=0,/normal,charsize = 1.2
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    ;Plotting of the number of iterations completed by the fitter
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    ;Plotting of the number of runs
    ;Getting the width of the unrefreshed string
    widthtot=0.
    ;cgtext, xxpos, yypos,'Runs : ',color=0,/normal,charsize=-1,width=thiswidth,/addcmd & cmdind_x+=1
    cgtext, xxpos, yypos,'Iteration : ',color=0,/normal,charsize=-1,width=thiswidth
    widthtext = thiswidth
    widthtot+= thiswidth ;fixed width
    
    ;Getting the width of the refreshed string
    cgtext, xxpos, yypos,strtrim(!dustem_iter.act,2),color=0,/normal,charsize=-1,width=thiswidth
    widthtot+= thiswidth;varying width        
    
    ;These two lines will also have to      be modified when plotting the refreshed values
    xxpos = 0.015 ;1.0 - widthtot - 0.03
    yypos = 0.015
    
    ;Displaying fixed part
    ;cgtext, xxpos, yypos,'Runs : ',color=0,/normal,charsize = 1.35,/addcmd & cmdind_x+=1
    cgtext, xxpos, yypos,'Iteration : ',color=0,/normal,charsize = 1.35
    ;Displaying refreshed part (first run . This is the command that will be replaced)
    cgtext, xxpos + widthtext + 0.015 , yypos,strtrim(!dustem_iter.act,2),color=0,/normal,charsize = 1.0
    ;saving the command id to replace it
    
    
    ;plotting of (mostly) fixed data for rchi2
    ;Since the format of the strings is specified, the length/width of the string in thex direction is fixed. 
    
    
    ;Getting the width of the unrefreshed string
    widthtot=0.
    cgtext, xxpos, yypos,textoidl('\chi^{2} : '),color=0,/normal,charsize=-1,width=thiswidth
    widthtext = thiswidth
    widthtot+= thiswidth ;fixed width
    
    ;Getting the width of the refresh.ed string
    cgtext, xxpos, yypos,strtrim(string(chi2,format=frmt2),2),color=0,/normal,charsize=-1,width=thiswidth
    widthtot+= thiswidth;varying width        
    ;saving the command string width to replace it
    
    
    xxpos = 1.0 - widthtot - 0.03
    
    yypos = 0.97
    
    ;Displaying fixed part
    cgtext, xxpos, yypos,textoidl('\chi^{2} : '),color=0,/normal,charsize = 1.0
    ;Displaying refreshed part (first run . This is the command that will be replaced)
    
    cgtext, xxpos + widthtext , yypos,strtrim(string(chi2,format=frmt2),2),color=0,/normal,charsize = 1.0
    
    ;saving the command id to replace it
      
    
    
    ;plotting of (mostly) fixed data for rchi2
    
    ;Getting the width of the unrefreshed string
    widthtot=0.
    cgtext, xxpos, yypos,textoidl('r_{\chi^{2}} : '),color=0,/normal,charsize=-1,width=thiswidth
    widthtext = thiswidth
    widthtot+= thiswidth ;fixed width
    ;!dustemcgwin_ncmds.rchi2.txtwdth1 = thiswidth
    ;Getting the width of the refreshed string
    cgtext, xxpos, yypos,strtrim(string(rchi2,format=frmt2),2),color=0,/normal,charsize=-1,width=thiswidth
    widthtot+= thiswidth;varying width        
    
    ;These two lines will also have to      be modified when plotting the refreshed values
    xxpos = 1.0 - widthtot - 0.03
    yypos = 0.95
    
    ;Displaying fixed part
    cgtext, xxpos, yypos,textoidl('r_{\chi^{2}} : '),color=0,/normal,charsize = 1.35
    ;Displaying refreshed part (first run . This is the command that will be replaced)
    cgtext, xxpos + widthtext , yypos,strtrim(string(rchi2,format=frmt2),2),color=0,/normal,charsize = 1.0
    ;saving the command id to replace it
    
    
    ;Plotting of the title of the dashboard (plot(s))
    
    ;NB: JP is right, the user should be able to set the entirety of the title.
    ;Make this block aware of the saving of the data  (from the fits table)
    
    
    ;Getting the width of the title 
    tit=string(_extra.title);
    
    cgtext, 0.3, 0.95,tit+' (RUNNING)',color=0,/normal,charsize=-1,width=thiswidth
    widthtot = thiswidth
    xxpos = (1 - thiswidth)/2
    yypos = 0.96
    
    cgtext, 0.3, 0.95,tit,color=0,/normal,charsize=-1,width=thiswidth
      
    cgtext, xxpos, yypos,tit,color=0,/normal,charsize = 1.6
    xxpos+=thiswidth*1.6
    cgtext, xxpos, yypos,' (RUNNING)',color=0,/normal,charsize = 1.6
    
    
;     endif else begin 
;     
;     
;     winid_x = !dustemcgwin_id.ext
;     cgcontrol, winid_x, execute=0
;     cgset, winid_x ;apparently specifying the window index isn't enough. This might be because of the use of cgcontrol
;     
;     ;Refreshing chi2 data: 
;     cmdind_x = !dustemcgwin_ncmds.chi2.pl
;     xxpos = 1 - !dustemcgwin_ncmds.chi2.txtwdth - 0.03  
;     yypos = 0.97
;     cgwindow,'cgtext', xxpos , yypos,strtrim(string(chi2,format=frmt2),2),color=0,/normal,charsize = 1.0,/replacecmd,cmdindex=cmdind_x, winid=winid_x ;& cmdind_m+=1
;     
;     
;     
;     ;Refreshing rchi2 data: 
;     cmdind_x = !dustemcgwin_ncmds.rchi2.pl
;     xxpos = 1 - !dustemcgwin_ncmds.rchi2.txtwdth - 0.03  
;     yypos = 0.95
;     cgwindow,'cgtext', xxpos , yypos,strtrim(string(rchi2,format=frmt2),2),color=0,/normal,charsize = 1.0,/replacecmd,cmdindex=cmdind_x, winid=winid_x ;& cmdind_m+=1
;     
;     
;     ;Refreshing number of runs data: 
;     cmdind_x = !dustemcgwin_ncmds.runs.pl
;     xxpos = 0.03 + !dustemcgwin_ncmds.runs.txtwdth*1.35  ;(because of charsize)
;     yypos = 0.015
;     cgwindow,'cgtext', xxpos , yypos,strtrim(!dustem_iter.act,2),color=0,/normal,charsize = 1.0,/replacecmd,cmdindex=cmdind_x, winid=winid_x ;& cmdind_m+=1
;     
;       
;     if !dustem_end EQ 1 then begin
;         ;replacing my count - 3
;         tit=!dustem_plot_extra.title
;         cmdind_x = !dustemcgwin_ncmds.pltit.pl
;         
;         xxpos = !dustemcgwin_ncmds.pltit.txtwdth
;         yypos = 0.96
;     
;         cgwindow,'cgtext', xxpos , yypos,' (Final Run)',color=0,/normal,charsize = 1.6,/replacecmd,cmdindex=cmdind_x, winid=winid_x  
;     
;     endif
;     
;     endelse
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    ;cgWindow_GetDefs,xsize=xsize,ysize=ysize
    ;cgcontrol, resize=[xsize,ysize]
    if !run_pol then begin
        ;,wback='grey'
        
        ;position arrays for plot and normalized graph
        
        ;THIS IS HARD-CODED IN A VERY SILLY WAY
        
        p_ext = [0.05,0.67,0.475,0.90]
        p_pext = [0.525,0.67,0.95,0.90]
        p_spext = [0.05,0.375,0.475,0.575] ; Should we plot this? tau_polext/tau_ext_tot. YES FOR NOW...
        p_psiext = [0.525,0.375,0.95,0.575]
        p_qext = [0.05,0.12,0.475,0.35]  
        p_uext = [0.525,0.12,0.95,0.35]
        
        np_ext = [0.05,0.60,0.475,0.67]
        np_pext = [0.525,0.60,0.95,0.67]
        np_qext = [0.05,0.05,0.475,0.12] 
        np_uext = [0.525,0.05,0.95,0.12]
        
        p_ext[1]+= 0.0125 & p_ext[3]+= 0.0125 
        p_pext[1]+= 0.0125 & p_pext[3]+= 0.0125
        p_spext[1]+= 0.0125 & p_spext[3]+= 0.0125
        p_psiext[1]+= 0.0125 & p_psiext[3]+= 0.0125
        p_qext[1]+= 0.0125 & p_qext[3]+= 0.0125
        p_uext[1]+= 0.0125 & p_uext[3]+= 0.0125
        
        np_ext[1]+= 0.0125 & np_ext[3]+= 0.0125 
        np_pext[1]+= 0.0125 & np_pext[3]+= 0.0125
        np_qext[1]+= 0.0125 & np_qext[3]+= 0.0125
        np_uext[1]+= 0.0125 & np_uext[3]+= 0.0125
        
        
          
    endif else begin
        p_ext  = [0.07,0.30,0.97,0.85]
        np_ext = [0.07,0.10,0.97,0.30]
    
    endelse

    ;Plotting of sed data axes (whether or not data is present)
    plotsym,0,/fill ;you might need to execute this again. hmm...


    ;This is not the right test the user might want to show the prediction for sed and fit the stokes parameters
    if ~test_ext then begin ; EXT data is not present (For completeness) # This is only valid when !run_pol=1
        
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        dustemcgwin_dataset, st, dataset='EXT', /nodata, position=p_ext, _extra=_extra 
        dustemcgwin_dataset, st, dataset='EXT', /nodata, /norm, position=np_ext, _extra=_extra
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    endif else begin ;EXT exists
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        dustemcgwin_dataset, st, dataset='EXT', position=p_ext, _extra=_extra
        dustemcgwin_dataset, st, dustem_ext,EXT_spec, dataset='EXT', /refresh ,position=p_ext, _extra=_extra 
        
        dustemcgwin_dataset, st, dataset='EXT',/norm, position=np_ext, _extra=_extra ;I think nodata can also be used too
        
        dustemcgwin_dataset, st, dustem_ext,EXT_spec, dataset='EXT', /norm, /refresh,position=np_ext, _extra=_extra 
               
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    endelse
    
    
      if !run_pol then begin 
        
        if ~test_qext then begin ;Qext is not present
            
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            dustemcgwin_dataset, st, dataset='QEXT', /nodata, position=p_qext, _extra=_extra 
            dustemcgwin_dataset, st, dataset='QEXT', /nodata, /norm, position=np_qext, _extra=_extra 
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        endif else begin ;Qext data is present
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            ;Plotting of postive values if they exist (if hidden data is present it is plotted if not an empty plot is rendered)
            dustemcgwin_dataset, st, dataset='QEXT', position=p_qext,/positive_only, _extra=_extra 
            ;Refreshing the positive_only plot ONLY if there is data. If not do nothing
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            dustemcgwin_dataset, st, dustem_qext,QEXT_spec, dataset='QEXT',/positive_only, /refresh ,position=p_qext, _extra=_extra 
            
            dustemcgwin_dataset, st, dataset='QEXT', position=p_qext,/negative_only, _extra=_extra
            ;Refreshing the negative_only plot ONLY if there is data. If not do nothing
            dustemcgwin_dataset, st, dustem_qext,QEXT_spec,dataset='QEXT',/negative_only, /refresh ,position=p_qext, _extra=_extra
        
            dustemcgwin_dataset, st, dataset='QEXT',/norm, position=np_qext, _extra=_extra ;I think nodata can also be uqsed too
            dustemcgwin_dataset, st, dustem_qext,QEXT_spec,dataset='QEXT', /norm, /refresh,position=np_qext, _extra=_extra

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925
926
      endelse
          ;stop        
        if ~test_uext then begin ;uext is not present
            
55275be6   Ilyes Choubani   allowing no_obj p...
927
928
            dustemcgwin_dataset, st, dataset='UEXT', /nodata, position=p_uext, _extra=_extra
            dustemcgwin_dataset, st, dataset='UEXT', /nodata, /norm, position=np_uext, _extra=_extra 
ed831104   Ilyes Choubani   no obj plotting
929
930
        
        endif else begin ;uext data is present
55275be6   Ilyes Choubani   allowing no_obj p...
931
            
ed831104   Ilyes Choubani   no obj plotting
932
933
            ;stop
                ;Plotting of postive values if they exist (if hidden data is present it is plotted if not an empty plot is rendred)
55275be6   Ilyes Choubani   allowing no_obj p...
934
                dustemcgwin_dataset, st, dataset='UEXT', position=p_uext,/positive_only, _extra=_extra
ed831104   Ilyes Choubani   no obj plotting
935
936
                
                ;Refreshing the positive_only plot ONLY if there is data. If not do nothing
55275be6   Ilyes Choubani   allowing no_obj p...
937
                dustemcgwin_dataset, st, dustem_uext,UEXT_spec, dataset='UEXT',/positive_only, /refresh ,position=p_uext, _extra=_extra 
ed831104   Ilyes Choubani   no obj plotting
938
                
55275be6   Ilyes Choubani   allowing no_obj p...
939
940
              
                dustemcgwin_dataset, st, dataset='UEXT', position=p_uext,/negative_only, _extra=_extra 
ed831104   Ilyes Choubani   no obj plotting
941
                ;Refreshing the negative_only plot ONLY if there is data. If not do nothing
55275be6   Ilyes Choubani   allowing no_obj p...
942
                dustemcgwin_dataset, st, dustem_uext,UEXT_spec, dataset='UEXT',/negative_only, /refresh ,position=p_uext, _extra=_extra
ed831104   Ilyes Choubani   no obj plotting
943
                
ed831104   Ilyes Choubani   no obj plotting
944
                
55275be6   Ilyes Choubani   allowing no_obj p...
945
946
947
948
                dustemcgwin_dataset, st, dataset='UEXT',/norm, position=np_uext, _extra=_extra ;I think nodata can also be uused too
                dustemcgwin_dataset, st, dustem_uext,UEXT_spec, dataset='UEXT', /norm, /refresh,position=np_uext, _extra=_extra 
            
                      
ed831104   Ilyes Choubani   no obj plotting
949
950
951
952
      endelse
      
      if ~test_psi_ext then begin ; psi_ext data is not present (For completeness) # This is only valid when !run_pol=1
          
55275be6   Ilyes Choubani   allowing no_obj p...
953
          dustemcgwin_dataset, st, dataset='PSI_EXT', /nodata, position=p_psiext, _extra=_extra  
ed831104   Ilyes Choubani   no obj plotting
954
955
956

      endif else begin ;psi_ext exists

55275be6   Ilyes Choubani   allowing no_obj p...
957
958
959
              dustemcgwin_dataset, st, dataset='psi_ext', position=p_psiext, _extra=_extra 
              dustemcgwin_dataset, st, dustem_psi_ext,PSIEXT_spec, dataset='psi_ext', /refresh ,position=p_psiext, _extra=_extra 
              
ed831104   Ilyes Choubani   no obj plotting
960
              
ed831104   Ilyes Choubani   no obj plotting
961
962
963
964
965
      endelse
        
      
      if ~test_polext then begin ; polext data is not present (For completeness) # This is only valid when !run_pol=1
          
55275be6   Ilyes Choubani   allowing no_obj p...
966
967
          dustemcgwin_dataset, st, dataset='polext', /nodata, position=p_pext, _extra=_extra 
          dustemcgwin_dataset, st, dataset='polext', /nodata, /norm, position=np_pext, _extra=_extra 
ed831104   Ilyes Choubani   no obj plotting
968
969
970

      endif else begin ;polext exists

55275be6   Ilyes Choubani   allowing no_obj p...
971
972
973
974
975
976
        dustemcgwin_dataset, st, dataset='polext', position=p_pext, _extra=_extra 
        dustemcgwin_dataset, st, dustem_polext,POLEXT_spec, dataset='polext', /refresh ,position=p_pext, _extra=_extra 
         
        dustemcgwin_dataset, st, dataset='polext',/norm, position=np_pext, _extra=_extra  ;I think nodata can also be upolsed too
        dustemcgwin_dataset, st, dustem_polext,POLEXT_spec, dataset='polext', /norm, /refresh,position=np_pext, _extra=_extra 
        
ed831104   Ilyes Choubani   no obj plotting
977
978
979
980
981
      endelse      
      
      
      if ~test_fpolext then begin ; fpolext data is not present (For completeness) # This is only valid when !run_pol=1
          
55275be6   Ilyes Choubani   allowing no_obj p...
982
983
          dustemcgwin_dataset, st, dataset='fpolext', /nodata, position=p_spext, _extra=_extra  
          
ed831104   Ilyes Choubani   no obj plotting
984
985
986

      endif else begin ;fpolext exists

55275be6   Ilyes Choubani   allowing no_obj p...
987
988
989
990
        
        dustemcgwin_dataset, st, dataset='fpolext', position=p_spext, _extra=_extra 
        dustemcgwin_dataset, st, dustem_fpolext,SPEXT_spec,EXT_spec, dataset='fpolext', /refresh ,position=p_spext, _extra=_extra

ed831104   Ilyes Choubani   no obj plotting
991

ed831104   Ilyes Choubani   no obj plotting
992
993
994
995
996
      endelse  
      

    ENDIF
        
ed831104   Ilyes Choubani   no obj plotting
997
998
999
1000
1001
     
          
ENDIF 


55275be6   Ilyes Choubani   allowing no_obj p...
1002
1003
1004
1005
;PLOTTING OF THE PARAMETERS
window,2,xpos=param_wxpos,ypos=param_wypos,xsize=param_wxsize,ysize=param_wysize,title='DUSTEMWRAP '+!dustem_version.version+' (PARAMETERS)' ; keeping the same y dimension of the emission/extinction plot? 
dustemcgwin_dataset, st, res, errors, p_dim,dataset='PARAMETERS',_extra=_extra ;& cmdind_prms+=1
dustemcgwin_dataset, st, res, errors, p_dim,dataset='PARAMETERS',/refresh, _extra=_extra 
ed831104   Ilyes Choubani   no obj plotting
1006

55275be6   Ilyes Choubani   allowing no_obj p...
1007
;PLOTTING OF THE PLUGINS
ed831104   Ilyes Choubani   no obj plotting
1008
IF (tag_names(*!dustem_plugin))(0) NE 'NONE' THEN BEGIN  
55275be6   Ilyes Choubani   allowing no_obj p...
1009
1010
1011
1012
    
    window,3,xpos=plugin_wxpos,ypos=plugin_wypos,xsize=plugin_wxsize,ysize=plugin_wysize,title='DUSTEMWRAP '+!dustem_version.version+' (PLUGINS)' ; keeping the same y dimension of the emission/extinction plot? 
    dustemcgwin_dataset, st, res, errors, p_dim,dataset='PLUGINS',_extra=_extra ;& cmdind_prms+=1
    dustemcgwin_dataset, st, res, errors, p_dim,dataset='PLUGINS', /refresh , winid=winid_plgns, _extra=_extra 
ed831104   Ilyes Choubani   no obj plotting
1013
1014
1015
1016
1017
1018
     
ENDIF

the_end:

END