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src/idl/dustemwrap_plot.pro 50.7 KB
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PRO dustemwrap_plot,p_dim,st,dustem_sed,SED_spec,dustem_qsed,Q_spec,dustem_used,U_spec,dustem_polsed,P_spec,dustem_polfrac,SP_spec,dustem_psi_em,PSI_spec,dustem_ext,EXT_spec,dustem_qext,QEXT_spec,dustem_uext,UEXT_spec,dustem_polext,POLEXT_spec,dustem_fpolext,SPEXT_spec,dustem_psi_ext,PSIEXT_spec,_extra=_extra 
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;This is also necessary for the plotting of the results of the fit (Last iteration) 
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IF not keyword_set(st) THEN BEGIN
  ;Activation of the plugins is needed because of the plotting of the total emission model that includes them. 
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  dustem_activate_plugins,p_dim/(*(*!dustem_fit).param_init_values),st  ; 0/0 division case?
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  ;# Emission
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  ;if isa(!dustem_data.sed) then begin ;using !dustem_data instead of !dustem_show because in this release the user is compelled to fit IQU whether in M or X
  if not keyword_set(dustem_sed) and isa(!dustem_data.sed) then begin ;better test?
  
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      dustem_sed = dustem_compute_sed(p_dim,st,SED_spec)
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      if !run_pol && !run_lin then begin
          
          dustem_polsed = dustem_compute_polsed(p_dim,st,P_spec,SP_spec,dustem_polfrac)
          toto = dustem_compute_stokes(p_dim,st,dustem_qsed,dustem_used,Q_spec,U_spec,PSI_spec,dustem_psi_em) 
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          ;stop
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      endif         
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  endif
  
  ;# Extinction
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;   if isa(!dustem_data.ext) then begin
  if not keyword_set(dustem_ext) and isa(!dustem_data.ext) then begin
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      dustem_ext = dustem_compute_ext(p_dim,st,EXT_spec)
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      if !run_pol && !run_lin then begin
          
          dustem_polext = dustem_compute_polext(p_dim,st,POLEXT_spec,SPEXT_spec,dustem_fpolext)
          toto = dustem_compute_stokext(p_dim,st,dustem_qext,dustem_uext,QEXT_spec,UEXT_spec,PSIEXT_spec,dustem_psi_ext) 
          
      endif
  endif
  
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ENDIF ELSE BEGIN ;st is provided 
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    ;stop

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    ;# Emission
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    ;if isa(!dustem_data.sed) then begin
    if not keyword_set(dustem_sed) and isa(!dustem_data.sed) then begin
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        dustem_sed = dustem_compute_sed(p_dim,st,SED_spec)
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        if !run_pol && !run_lin then begin
            
            dustem_polsed = dustem_compute_polsed(p_dim,st,P_spec,SP_spec,dustem_polfrac)
            toto = dustem_compute_stokes(p_dim,st,dustem_qsed,dustem_used,Q_spec,U_spec,PSI_spec,dustem_psi_em) 
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            ;stop    
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        endif
    endif
    
    ;# Extinction
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    ;if isa(!dustem_data.ext) then begin
    
    if not keyword_set(dustem_ext) and isa(!dustem_data.ext) then begin
    
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        dustem_ext = dustem_compute_ext(p_dim,st,EXT_spec)
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        if !run_pol && !run_lin then begin
            
            dustem_polext = dustem_compute_polext(p_dim,st,POLEXT_spec,SPEXT_spec,dustem_fpolext)
            toto = dustem_compute_stokext(p_dim,st,dustem_qext,dustem_uext,QEXT_spec,UEXT_spec,PSIEXT_spec,dustem_psi_ext) 
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        endif
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    endif
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ENDELSE 
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;LIST OF TESTS THAT NEED TO BE RAN SO THAT THE PLOTTING OF THE MODEL SPECTRA OCCURS

test_sed = isa(!dustem_show.sed)
test_ext = isa(!dustem_show.ext)
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if !run_pol then begin
    test_polext = isa(!dustem_show.polext)
    test_polsed = isa(!dustem_show.polsed)
    test_polfrac = isa(!dustem_show.polfrac)
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    test_fpolext = isa(!dustem_show.fpolext)
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    test_psi_em = isa(!dustem_show.psi_em)
    test_psi_ext = isa(!dustem_show.psi_ext)
    test_qsed = isa(!dustem_show.qsed)
    test_used = isa(!dustem_show.used)
    test_qext = isa(!dustem_show.qext)
    test_uext = isa(!dustem_show.uext)
    test_m = test_sed or test_polsed or test_polfrac or test_qsed or test_used or test_psi_em
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    test_x = test_ext or test_polext or test_fpolext or test_qext or test_uext or test_psi_ext
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endif else begin
    test_m = test_sed 
    test_x = test_ext 
endelse
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;testing on the fitting of emission vs extinction data
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n_plgns = n_tags(*!dustem_plugin)
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frmt0='(A36)'
frmt1='(1E10.2)'
frmt2='(10F10.2)'

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;I have decided to keep track of the command index manually as I did not find any command online that does this.
cmdind_m = 0 ;for emission
cmdind_x = 0 ;for extinction
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;trying to do the same thing for parameters and plugins
cmdind_prms = 0 ;for parameters
cmdind_plgns = 0 ;for plugins
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;ADDING PLUGIN(S) TO SPECTRUM----------------
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;these following indices will be used to change the keep the same information in the _extra structure
;this is an initial solution until I finish coding the _extra-filtering procedure. 

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iswinsed = !dustemcgwin_id.sed EQ la_undef()
iswinext = !dustemcgwin_id.ext EQ la_undef()

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;trying to do the same thing for parameters and plugins
;But we need to know if the extinction or the emission mode is on.
;so the use of ths pointer will be different than the others
iswinprms = !dustemcgwin_id.prms EQ la_undef()
iswinplgns = !dustemcgwin_id.plgns EQ la_undef()


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;plotstrct = !p
degtorad = !pi/180 ;factor that the arctan will be devided by in order to have an axis in degrees. Talk to JP maybe he wants angle in radians.

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;I think I will test over the presence of the errors because they are not computed at that point.

;errors = ((*!dustem_fit).current_param_errors)
if isa((*!dustem_fit).current_param_errors) then begin
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    errors = (*(*!dustem_fit).current_param_errors) * (*(*!dustem_fit).param_init_values)
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endif else begin
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    errors = (*(*!dustem_fit).param_init_values)*0.;+la_undef();Initialized to 0 instead of la_undef() 
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ENDELSE 

if isa((*!dustem_fit).chi2) then begin
    chi2 = (*!dustem_fit).chi2    
endif else begin
    chi2 = la_undef();maybe not the best initialization 
endelse 

if isa((*!dustem_fit).rchi2) then begin
    rchi2 = (*!dustem_fit).rchi2    
endif else begin
    rchi2 = la_undef();maybe not the best initialization 
endelse 

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if isa(p_dim) then begin
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    if isa((*!dustem_fit).current_param_values) then begin
        
        res  = (*(*!dustem_fit).current_param_values) 
        
    endif else begin  
    
        res = p_dim    
    
    endelse
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endif else begin
    
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   res = (*(*!dustem_fit).param_init_values)*0.;+la_undef()
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endelse
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;stop
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if test_m then begin
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    ;Generating emission window and saving window ID
    
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    if iswinsed then begin    ;This is when the cgwindow does not exist already
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        if !run_pol then cgwindow,wxsize=910,wysize=658,wtitle='DUSTEMWRAP v2.0 (EMISSION)' else cgwindow, wtitle='DUSTEMWRAP v2.0 (EMISSION)';, wback='grey';,wobject=winobj_m
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        winid_m = cgquery(dimensions=dim_m,/current) ;this has to be changed because the dimensions of this array change with the data sets present (extinction/emission).
        !dustemcgwin_id.sed = winid_m
        
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        cgcontrol, winid_m, execute=0
        ;cgset, winid_m
        ;Plotting model string (legend)
        xxpos = 0.015
        yypos = 0.97
        ;Plotting Hydrogen column density string (legend)
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        cgtext, xxpos, yypos,'Model : '+!dustem_model,color=0,/normal,charsize = 1.2,/addcmd ;& cmdind_m+=1 This is the first command in the window
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        yypos = 0.95
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        cgtext, xxpos, yypos,textoidl('N_{H}')+textoidl(' (H/cm^2) : ')+strmid(string(*!dustem_HCD,format='(1E10.2)'),2),color=0,/normal,charsize = 1.2,/addcmd & cmdind_m+=1
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        ;Plotting of the number of iterations completed by the fitter
        
        ;Plotting of the number of runs
        ;Getting the width of the unrefreshed string
        widthtot=0.
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        ;cgtext, xxpos, yypos,'Runs : ',color=0,/normal,charsize=-1,width=thiswidth,/addcmd & cmdind_m+=1
        cgtext, xxpos, yypos,'Iteration : ',color=0,/normal,charsize=-1,width=thiswidth,/addcmd & cmdind_m+=1
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        widthtext = thiswidth
        widthtot+= thiswidth ;fixed width
        !dustemcgwin_ncmds.runs.txtwdth = thiswidth
        
        ;Getting the width of the refreshed string
        cgtext, xxpos, yypos,strtrim(!dustem_iter.act,2),color=0,/normal,charsize=-1,width=thiswidth,/addcmd & cmdind_m+=1
        widthtot+= thiswidth;varying width        
        
        ;These two lines will also have to      be modified when plotting the refreshed values
        xxpos = 0.015 ;1.0 - widthtot - 0.03
        yypos = 0.015
        
        ;Displaying fixed part
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        ;cgtext, xxpos, yypos,'Runs : ',color=0,/normal,charsize = 1.35,/addcmd & cmdind_m+=1
        cgtext, xxpos, yypos,'Iteration : ',color=0,/normal,charsize = 1.35,/addcmd & cmdind_m+=1
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        ;Displaying refreshed part (first run . This is the command that will be replaced)
        cgtext, xxpos + widthtext + 0.015 , yypos,strtrim(!dustem_iter.act,2),color=0,/normal,charsize = 1.0,/addcmd & cmdind_m+=1
        ;saving the command id to replace it
        !dustemcgwin_ncmds.runs.pl = cmdind_m

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        ;plotting of (mostly) fixed data for rchi2
        ;Since the format of the strings is specified, the length/width of the string in thex direction is fixed. 
        
        
        ;Getting the width of the unrefreshed string
        widthtot=0.
        cgtext, xxpos, yypos,textoidl('\chi^{2} : '),color=0,/normal,charsize=-1,width=thiswidth,/addcmd & cmdind_m+=1
        widthtext = thiswidth
        widthtot+= thiswidth ;fixed width
        
        ;Getting the width of the refresh.ed string
        cgtext, xxpos, yypos,strtrim(string(chi2,format=frmt2),2),color=0,/normal,charsize=-1,width=thiswidth,/addcmd & cmdind_m+=1
        widthtot+= thiswidth;varying width        
        ;saving the command string width to replace it
        !dustemcgwin_ncmds.chi2.txtwdth = thiswidth
        
        
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        xxpos = 1.0 - widthtot - 0.03
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        yypos = 0.97
        
        ;Displaying fixed part
        cgtext, xxpos, yypos,textoidl('\chi^{2} : '),color=0,/normal,charsize = 1.0,/addcmd & cmdind_m+=1
        ;Displaying refreshed part (first run . This is the command that will be replaced)
        
        cgtext, xxpos + widthtext , yypos,strtrim(string(chi2,format=frmt2),2),color=0,/normal,charsize = 1.0,/addcmd & cmdind_m+=1
       
        ;saving the command id to replace it
        !dustemcgwin_ncmds.chi2.pl = cmdind_m
 
        
        
        ;plotting of (mostly) fixed data for rchi2
        
        ;Getting the width of the unrefreshed string
        widthtot=0.
        cgtext, xxpos, yypos,textoidl('r_{\chi^{2}} : '),color=0,/normal,charsize=-1,width=thiswidth,/addcmd & cmdind_m+=1
        widthtext = thiswidth
        widthtot+= thiswidth ;fixed width
        ;!dustemcgwin_ncmds.rchi2.txtwdth1 = thiswidth
        ;Getting the width of the refreshed string
        cgtext, xxpos, yypos,strtrim(string(rchi2,format=frmt2),2),color=0,/normal,charsize=-1,width=thiswidth,/addcmd & cmdind_m+=1
        widthtot+= thiswidth;varying width        
        !dustemcgwin_ncmds.rchi2.txtwdth = thiswidth
        ;These two lines will also have to      be modified when plotting the refreshed values
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        xxpos = 1.0 - widthtot - 0.03
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        yypos = 0.95
        
        ;Displaying fixed part
        cgtext, xxpos, yypos,textoidl('r_{\chi^{2}} : '),color=0,/normal,charsize = 1.35,/addcmd & cmdind_m+=1
        ;Displaying refreshed part (first run . This is the command that will be replaced)
        cgtext, xxpos + widthtext , yypos,strtrim(string(rchi2,format=frmt2),2),color=0,/normal,charsize = 1.0,/addcmd & cmdind_m+=1
        ;saving the command id to replace it
        !dustemcgwin_ncmds.rchi2.pl = cmdind_m
        
        
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        ;Plotting of the title of the dashboard (plot(s))
        
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        ;NB issue here because the user can't modify the title after the dustem_mpfit_data call at the main procedure level (user proc)
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        ;Getting the width of the title 
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        tit=string(_extra.title);
    
        cgtext, 0.3, 0.95,tit+' (RUNNING)',color=0,/normal,charsize=-1,width=thiswidth,/addcmd & cmdind_m+=1
        widthtot = thiswidth
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        xxpos = (1 - thiswidth)/2
        yypos = 0.96
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        cgtext, 0.3, 0.95,tit,color=0,/normal,charsize=-1,width=thiswidth,/addcmd & cmdind_m+=1 
        !dustemcgwin_ncmds.pltit.txtwdth = thiswidth*1.6 + (1 - widthtot)/2
         
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        cgtext, xxpos, yypos,tit,color=0,/normal,charsize = 1.6,/addcmd & cmdind_m+=1
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        xxpos+=thiswidth*1.6
        cgtext, xxpos, yypos,' (RUNNING)',color=0,/normal,charsize = 1.6,/addcmd & cmdind_m+=1
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        !dustemcgwin_ncmds.pltit.pl = cmdind_m
        
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    endif else begin     ;This is when the cgwindow exists already
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        winid_m = !dustemcgwin_id.sed
        cgcontrol, winid_m, execute=0
        cgset, winid_m ;apparently specifying the window index isn't enough. This might be because of the use of cgcontrol
        
        ;Refreshing chi2 data: 
        cmdin_m = !dustemcgwin_ncmds.chi2.pl
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        xxpos = 1 - !dustemcgwin_ncmds.chi2.txtwdth - 0.03  
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        yypos = 0.97
        cgwindow,'cgtext', xxpos , yypos,strtrim(string(chi2,format=frmt2),2),color=0,/normal,charsize = 1.0,/replacecmd,cmdindex=cmdin_m, winid=winid_m ;& cmdind_m+=1
        
        
        
        ;Refreshing rchi2 data: 
        cmdin_m = !dustemcgwin_ncmds.rchi2.pl
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        xxpos = 1 - !dustemcgwin_ncmds.rchi2.txtwdth - 0.03  
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        yypos = 0.95
        cgwindow,'cgtext', xxpos , yypos,strtrim(string(rchi2,format=frmt2),2),color=0,/normal,charsize = 1.0,/replacecmd,cmdindex=cmdin_m, winid=winid_m ;& cmdind_m+=1
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        ;Refreshing number of runs data: 
        cmdin_m = !dustemcgwin_ncmds.runs.pl
        xxpos = 0.03 + !dustemcgwin_ncmds.runs.txtwdth*1.35  ;(because of charsize)
        yypos = 0.015
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        if !dustem_iter.act eq 0 then txt = 'Fit failed. '  else txt = strtrim(!dustem_iter.act,2)
        cgwindow,'cgtext', xxpos , yypos,txt,color=0,/normal,charsize = 1.0,/replacecmd,cmdindex=cmdin_m, winid=winid_m ;& cmdind_m+=1
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        ;update of the title here ?
        
        if isa((*!dustem_fit).current_param_values) then begin
            ;replacing my count - 3
            tit=string(_extra.title)
            cmdin_m = !dustemcgwin_ncmds.pltit.pl
            
            xxpos = !dustemcgwin_ncmds.pltit.txtwdth
            yypos = 0.96
        
            cgwindow,'cgtext', xxpos , yypos,' (Final Run)',color=0,/normal,charsize = 1.6,/replacecmd,cmdindex=cmdin_m, winid=winid_m  
        
        endif
    
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    endelse
2910e8ce   Ilyes Choubani   Draft version of ...
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    ;cgWindow_GetDefs,xsize=xsize,ysize=ysize
    ;cgcontrol, resize=[xsize,ysize]
    if !run_pol then begin
c8368c6e   Ilyes Choubani   updating plotting...
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        ;,wback='grey'
2910e8ce   Ilyes Choubani   Draft version of ...
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        ;position arrays for plot and normalized graph
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342
        ;THIS IS HARD-CODED IN A VERY SILLY WAY
2910e8ce   Ilyes Choubani   Draft version of ...
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        p_sed = [0.05,0.67,0.475,0.90]
        p_psed = [0.525,0.67,0.95,0.90]
af5bca1f   Ilyes Choubani   general update
346
        p_spsed = [0.05,0.375,0.475,0.575]
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        p_psised = [0.525,0.375,0.95,0.575]
5f04fa07   Ilyes Choubani   general update
348
        p_qsed = [0.05,0.12,0.475,0.35]  
18e4331f   Ilyes Choubani   general update (f...
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        p_used = [0.525,0.12,0.95,0.35]
        
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        np_sed = [0.05,0.60,0.475,0.67]
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        np_psed = [0.525,0.60,0.95,0.67]
        np_qsed = [0.05,0.05,0.475,0.12] 
        np_used = [0.525,0.05,0.95,0.12]
af5bca1f   Ilyes Choubani   general update
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        p_sed[1]+= 0.0125 & p_sed[3]+= 0.0125 
        p_psed[1]+= 0.0125 & p_psed[3]+= 0.0125
        p_spsed[1]+= 0.0125 & p_spsed[3]+= 0.0125
        p_psised[1]+= 0.0125 & p_psised[3]+= 0.0125
        p_qsed[1]+= 0.0125 & p_qsed[3]+= 0.0125
        p_used[1]+= 0.0125 & p_used[3]+= 0.0125
        
        np_sed[1]+= 0.0125 & np_sed[3]+= 0.0125 
        np_psed[1]+= 0.0125 & np_psed[3]+= 0.0125
        np_qsed[1]+= 0.0125 & np_qsed[3]+= 0.0125
        np_used[1]+= 0.0125 & np_used[3]+= 0.0125
        
        
          
2910e8ce   Ilyes Choubani   Draft version of ...
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    endif else begin
        p_sed  = [0.07,0.30,0.97,0.85]
        np_sed = [0.07,0.10,0.97,0.30]
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2910e8ce   Ilyes Choubani   Draft version of ...
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    endelse

    ;Plotting of sed data axes (whether or not data is present)
    plotsym,0,/fill ;you might need to execute this again. hmm...
5f04fa07   Ilyes Choubani   general update
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bc224f3e   Ilyes Choubani   Update of plottin...
380
    ;This is not the right test the user might want to show the prediction for sed and fit the stokes parameters
2910e8ce   Ilyes Choubani   Draft version of ...
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    if ~test_sed then begin ; SED data is not present (For completeness) # This is only valid when !run_pol=1
        
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        cgwindow,'dustemcgwin_dataset', st, dataset='SED', /nodata, position=p_sed, /addcmd, winid=winid_m, _extra=_extra & cmdind_m+=1
        cgwindow,'dustemcgwin_dataset', st, dataset='SED', /nodata, /norm, position=np_sed, /addcmd, winid=winid_m, _extra=_extra & cmdind_m+=1
2910e8ce   Ilyes Choubani   Draft version of ...
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2910e8ce   Ilyes Choubani   Draft version of ...
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    endif else begin ;SED exists
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       if  ~iswinsed then begin
5f04fa07   Ilyes Choubani   general update
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96a72c8b   Ilyes Choubani   seperating xrange...
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            cmdind_m = !dustemcgwin_ncmds.sed.pl
            cgwindow,'dustemcgwin_dataset', st, dustem_sed,SED_spec,dataset='SED', /refresh ,position=p_sed, winid=winid_m,cmdindex=cmdind_m,/replacecmd,_extra=_extra     
            
            cmdind_m = !dustemcgwin_ncmds.sed.nrm
            cgwindow,'dustemcgwin_dataset', st, dustem_sed,SED_spec,dataset='SED', /norm, /refresh,position=np_sed, winid=winid_m,cmdindex=cmdind_m,/replacecmd,_extra=_extra
5f04fa07   Ilyes Choubani   general update
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18e4331f   Ilyes Choubani   general update (f...
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       endif else begin
5f04fa07   Ilyes Choubani   general update
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           cgwindow,'dustemcgwin_dataset', st, dataset='SED', position=p_sed, /addcmd, winid=winid_m, _extra=_extra & cmdind_m+=1 
96a72c8b   Ilyes Choubani   seperating xrange...
400
           
5f04fa07   Ilyes Choubani   general update
401
           cgwindow,'dustemcgwin_dataset', st, dustem_sed,SED_spec, dataset='SED', /refresh ,position=p_sed, /addcmd, winid=winid_m, _extra=_extra & cmdind_m+=1
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           !dustemcgwin_ncmds.sed.pl = cmdind_m
5f04fa07   Ilyes Choubani   general update
403
           
18e4331f   Ilyes Choubani   general update (f...
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           cgwindow,'dustemcgwin_dataset', st, dataset='SED',/norm, position=np_sed, /addcmd, winid=winid_m, _extra=_extra & cmdind_m+=1 ;I think nodata can also be used too
5f04fa07   Ilyes Choubani   general update
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           cgwindow,'dustemcgwin_dataset', st, dustem_sed,SED_spec, dataset='SED', /norm, /refresh,position=np_sed, /addcmd ,winid=winid_m, _extra=_extra & cmdind_m+=1
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           !dustemcgwin_ncmds.sed.nrm = cmdind_m
5f04fa07   Ilyes Choubani   general update
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18e4331f   Ilyes Choubani   general update (f...
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       endelse       
    endelse
    
    ;if ~!run_pol then begin;I don't think the order of the  ;goto, end_m
      if !run_pol then begin ;then goto, end_m
2910e8ce   Ilyes Choubani   Draft version of ...
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18e4331f   Ilyes Choubani   general update (f...
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        if ~test_qsed then begin ;Qsed is not present
            
            cgwindow,'dustemcgwin_dataset', st, dataset='QSED', /nodata, position=p_qsed, /addcmd, winid=winid_m, _extra=_extra & cmdind_m+=1
5f04fa07   Ilyes Choubani   general update
418
            cgwindow,'dustemcgwin_dataset', st, dataset='QSED', /nodata, /norm, position=np_qsed, /addcmd, winid=winid_m, _extra=_extra & cmdind_m+=1
c8368c6e   Ilyes Choubani   updating plotting...
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18e4331f   Ilyes Choubani   general update (f...
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        endif else begin ;Qsed data is present
               
            if  ~iswinsed then begin
96a72c8b   Ilyes Choubani   seperating xrange...
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18e4331f   Ilyes Choubani   general update (f...
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                cmdind_m = !dustemcgwin_ncmds.qsed.pl
                ;refreshing the positive_only and negative_only plots if data is present in them
07372e26   Ilyes Choubani   Corrected huge pl...
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                cgwindow,'dustemcgwin_dataset', st, dustem_qsed,Q_spec,dataset='QSED',/positive_only, nodata=0, /refresh ,position=p_qsed, winid=winid_m,/replacecmd,cmdindex=cmdind_m, _extra=_extra
5f04fa07   Ilyes Choubani   general update
427
                
07372e26   Ilyes Choubani   Corrected huge pl...
428
                cgwindow,'dustemcgwin_dataset', st, dustem_qsed,Q_spec, dataset='QSED',/negative_only, nodata=0, /refresh ,position=p_qsed, winid=winid_m,/replacecmd,cmdindex=cmdind_m+2, _extra=_extra
5f04fa07   Ilyes Choubani   general update
429
                
18e4331f   Ilyes Choubani   general update (f...
430
                cmdind_m = !dustemcgwin_ncmds.qsed.nrm
07372e26   Ilyes Choubani   Corrected huge pl...
431
                cgwindow,'dustemcgwin_dataset', st, dustem_qsed,Q_spec, dataset='QSED', /refresh, nodata=0, /norm,position=np_qsed, winid=winid_m,/replacecmd,cmdindex=cmdind_m, _extra=_extra
5f04fa07   Ilyes Choubani   general update
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18e4331f   Ilyes Choubani   general update (f...
433
            endif else begin
5f04fa07   Ilyes Choubani   general update
434
                
dfc68a85   Ilyes Choubani   Fixed some plotti...
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                ;Plotting of postive values if they exist (if hidden data is present it is plotted if not an empty plot is rendered)
18e4331f   Ilyes Choubani   general update (f...
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                cgwindow,'dustemcgwin_dataset', st, dataset='QSED', position=p_qsed, /addcmd, winid=winid_m,/positive_only, _extra=_extra & cmdind_m+=1
                ;Refreshing the positive_only plot ONLY if there is data. If not do nothing
07372e26   Ilyes Choubani   Corrected huge pl...
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                cgwindow,'dustemcgwin_dataset', st, dustem_qsed,Q_spec, dataset='QSED',/positive_only, /refresh ,position=p_qsed, /addcmd, winid=winid_m, _extra=_extra & cmdind_m+=1
                
                !dustemcgwin_ncmds.qsed.pl = cmdind_m
18e4331f   Ilyes Choubani   general update (f...
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                cgwindow,'dustemcgwin_dataset', st, dataset='QSED', position=p_qsed, /addcmd, winid=winid_m,/negative_only, _extra=_extra & cmdind_m+=1
                ;Refreshing the negative_only plot ONLY if there is data. If not do nothing
07372e26   Ilyes Choubani   Corrected huge pl...
444
                cgwindow,'dustemcgwin_dataset', st, dustem_qsed,Q_spec,dataset='QSED',/negative_only, /refresh ,position=p_qsed, /addcmd, winid=winid_m, _extra=_extra & cmdind_m+=1
18e4331f   Ilyes Choubani   general update (f...
445
                
5f04fa07   Ilyes Choubani   general update
446
                
18e4331f   Ilyes Choubani   general update (f...
447
                cgwindow,'dustemcgwin_dataset', st, dataset='QSED',/norm, position=np_qsed, /addcmd, winid=winid_m, _extra=_extra & cmdind_m+=1 ;I think nodata can also be uqsed too
07372e26   Ilyes Choubani   Corrected huge pl...
448
                cgwindow,'dustemcgwin_dataset', st, dustem_qsed,Q_spec,dataset='QSED', /norm, /refresh,position=np_qsed, /addcmd, winid=winid_m, _extra=_extra & cmdind_m+=1
18e4331f   Ilyes Choubani   general update (f...
449
                !dustemcgwin_ncmds.qsed.nrm = cmdind_m
5f04fa07   Ilyes Choubani   general update
450
                
18e4331f   Ilyes Choubani   general update (f...
451
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        endelse       
      endelse
5f04fa07   Ilyes Choubani   general update
453
         ;stop        
18e4331f   Ilyes Choubani   general update (f...
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        if ~test_used then begin ;used is not present
            
            cgwindow,'dustemcgwin_dataset', st, dataset='USED', /nodata, position=p_used, /addcmd, winid=winid_m, _extra=_extra & cmdind_m+=1
5f04fa07   Ilyes Choubani   general update
457
            cgwindow,'dustemcgwin_dataset', st, dataset='USED', /nodata, /norm, position=np_used, /addcmd, winid=winid_m, _extra=_extra & cmdind_m+=1
c8368c6e   Ilyes Choubani   updating plotting...
458
        
18e4331f   Ilyes Choubani   general update (f...
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        endif else begin ;used data is present
               
            if  ~iswinsed then begin
                cmdind_m = !dustemcgwin_ncmds.used.pl
                ;refreshing the positive_only and negative_only plots if data is present in them
07372e26   Ilyes Choubani   Corrected huge pl...
464
                cgwindow,'dustemcgwin_dataset', st, dustem_used,U_spec, dataset='USED',/positive_only, /refresh, nodata=0 ,position=p_used, winid=winid_m,/replacecmd,cmdindex=cmdind_m, _extra=_extra
5f04fa07   Ilyes Choubani   general update
465
                
07372e26   Ilyes Choubani   Corrected huge pl...
466
                cgwindow,'dustemcgwin_dataset', st, dustem_used,U_spec, dataset='USED',/negative_only, /refresh, nodata=0 ,position=p_used, winid=winid_m,/replacecmd,cmdindex=cmdind_m+2, _extra=_extra
5f04fa07   Ilyes Choubani   general update
467
                
18e4331f   Ilyes Choubani   general update (f...
468
                cmdind_m = !dustemcgwin_ncmds.used.nrm
07372e26   Ilyes Choubani   Corrected huge pl...
469
                cgwindow,'dustemcgwin_dataset', st, dustem_used,U_spec, dataset='USED', /refresh, nodata=0, /norm,position=np_used, winid=winid_m,/replacecmd,cmdindex=cmdind_m, _extra=_extra
5f04fa07   Ilyes Choubani   general update
470
                
18e4331f   Ilyes Choubani   general update (f...
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            endif else begin
            ;stop
                ;Plotting of postive values if they exist (if hidden data is present it is plotted if not an empty plot is rendred)
                cgwindow,'dustemcgwin_dataset', st, dataset='USED', position=p_used, /addcmd, winid=winid_m,/positive_only, _extra=_extra & cmdind_m+=1
                ;Refreshing the positive_only plot ONLY if there is data. If not do nothing
07372e26   Ilyes Choubani   Corrected huge pl...
476
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                cgwindow,'dustemcgwin_dataset', st, dustem_used,U_spec, dataset='USED',/positive_only, /refresh ,position=p_used, /addcmd, winid=winid_m, _extra=_extra & cmdind_m+=1
                
                !dustemcgwin_ncmds.used.pl = cmdind_m
18e4331f   Ilyes Choubani   general update (f...
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                cgwindow,'dustemcgwin_dataset', st, dataset='USED', position=p_used, /addcmd, winid=winid_m,/negative_only, _extra=_extra & cmdind_m+=1
                ;Refreshing the negative_only plot ONLY if there is data. If not do nothing
07372e26   Ilyes Choubani   Corrected huge pl...
482
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                cgwindow,'dustemcgwin_dataset', st, dustem_used,U_spec, dataset='USED',/negative_only, /refresh ,position=p_used, /addcmd, winid=winid_m, _extra=_extra & cmdind_m+=1
                
18e4331f   Ilyes Choubani   general update (f...
484
                
18e4331f   Ilyes Choubani   general update (f...
485
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                cgwindow,'dustemcgwin_dataset', st, dataset='USED',/norm, position=np_used, /addcmd, winid=winid_m, _extra=_extra & cmdind_m+=1 ;I think nodata can also be uused too
07372e26   Ilyes Choubani   Corrected huge pl...
487
                cgwindow,'dustemcgwin_dataset', st, dustem_used,U_spec, dataset='USED', /norm, /refresh,position=np_used, /addcmd, winid=winid_m, _extra=_extra & cmdind_m+=1
18e4331f   Ilyes Choubani   general update (f...
488
                !dustemcgwin_ncmds.used.nrm = cmdind_m
5f04fa07   Ilyes Choubani   general update
489
                
18e4331f   Ilyes Choubani   general update (f...
490
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        endelse       
      endelse
      
      if ~test_psi_em then begin ; psi_em data is not present (For completeness) # This is only valid when !run_pol=1
          
          cgwindow,'dustemcgwin_dataset', st, dataset='psi_em', /nodata, position=p_psised, /addcmd, winid=winid_m, _extra=_extra  & cmdind_m+=1
18e4331f   Ilyes Choubani   general update (f...
496
497

      endif else begin ;psi_em exists
5cb00808   Jean-Philippe Bernard   added some commen...
498
         ;stop
18e4331f   Ilyes Choubani   general update (f...
499
500
         if  ~iswinsed then begin
             cmdind_m = !dustemcgwin_ncmds.psi_em.pl
07372e26   Ilyes Choubani   Corrected huge pl...
501
             cgwindow,'dustemcgwin_dataset', st, dustem_psi_em,PSI_spec, dataset='psi_em', /refresh ,position=p_psised, winid=winid_m,/replacecmd,cmdindex=cmdind_m, _extra=_extra
af5bca1f   Ilyes Choubani   general update
502
             
18e4331f   Ilyes Choubani   general update (f...
503
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         endif else begin
         ;stop
             cgwindow,'dustemcgwin_dataset', st, dataset='psi_em', position=p_psised, /addcmd, winid=winid_m, _extra=_extra & cmdind_m+=1
07372e26   Ilyes Choubani   Corrected huge pl...
506
             cgwindow,'dustemcgwin_dataset', st, dustem_psi_em,PSI_spec, dataset='psi_em', /refresh ,position=p_psised, /addcmd, winid=winid_m, _extra=_extra & cmdind_m+=1
18e4331f   Ilyes Choubani   general update (f...
507
             !dustemcgwin_ncmds.psi_em.pl = cmdind_m
af5bca1f   Ilyes Choubani   general update
508

18e4331f   Ilyes Choubani   general update (f...
509
510
         endelse       
      endelse
c8368c6e   Ilyes Choubani   updating plotting...
511
        
18e4331f   Ilyes Choubani   general update (f...
512
513
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      if ~test_polsed then begin ; polsed data is not present (For completeness) # This is only valid when !run_pol=1
          
          cgwindow,'dustemcgwin_dataset', st, dataset='polsed', /nodata, position=p_psed, /addcmd, winid=winid_m, _extra=_extra & cmdind_m+=1
5f04fa07   Ilyes Choubani   general update
516
          cgwindow,'dustemcgwin_dataset', st, dataset='polsed', /nodata, /norm, position=np_psed, /addcmd, winid=winid_m, _extra=_extra & cmdind_m+=1
18e4331f   Ilyes Choubani   general update (f...
517
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      endif else begin ;polsed exists

         if  ~iswinsed then begin
             cmdind_m = !dustemcgwin_ncmds.polsed.pl
5f04fa07   Ilyes Choubani   general update
522
             cgwindow,'dustemcgwin_dataset', st, dustem_polsed,P_spec, dataset='polsed', /refresh ,position=p_psed, winid=winid_m,/replacecmd,cmdindex=cmdind_m, _extra=_extra
18e4331f   Ilyes Choubani   general update (f...
523
             cmdind_m = !dustemcgwin_ncmds.polsed.nrm
5f04fa07   Ilyes Choubani   general update
524
             cgwindow,'dustemcgwin_dataset', st, dustem_polsed,P_spec, dataset='polsed', /norm, /refresh,position=np_psed, winid=winid_m,/replacecmd,cmdindex=cmdind_m, _extra=_extra
18e4331f   Ilyes Choubani   general update (f...
525
526
527
         endif else begin
         ;stop
             cgwindow,'dustemcgwin_dataset', st, dataset='polsed', position=p_psed, /addcmd, winid=winid_m, _extra=_extra  & cmdind_m+=1  
5f04fa07   Ilyes Choubani   general update
528
             cgwindow,'dustemcgwin_dataset', st, dustem_polsed,P_spec, dataset='polsed', /refresh ,position=p_psed, /addcmd, winid=winid_m, _extra=_extra & cmdind_m+=1
18e4331f   Ilyes Choubani   general update (f...
529
530
             !dustemcgwin_ncmds.polsed.pl = cmdind_m
             cgwindow,'dustemcgwin_dataset', st, dataset='polsed',/norm, position=np_psed, /addcmd, winid=winid_m, _extra=_extra & cmdind_m+=1 ;I think nodata can also be upolsed too
5f04fa07   Ilyes Choubani   general update
531
             cgwindow,'dustemcgwin_dataset', st, dustem_polsed,P_spec, dataset='polsed', /norm, /refresh,position=np_psed, /addcmd, winid=winid_m, _extra=_extra & cmdind_m+=1
18e4331f   Ilyes Choubani   general update (f...
532
533
534
             !dustemcgwin_ncmds.polsed.nrm = cmdind_m
         endelse       
      endelse      
af5bca1f   Ilyes Choubani   general update
535
536
      
      
af5bca1f   Ilyes Choubani   general update
537
538
539
      if ~test_polfrac then begin ; polfrac data is not present (For completeness) # This is only valid when !run_pol=1
          
          cgwindow,'dustemcgwin_dataset', st, dataset='polfrac', /nodata, position=p_spsed, /addcmd, winid=winid_m, _extra=_extra  & cmdind_m+=1
18e4331f   Ilyes Choubani   general update (f...
540

af5bca1f   Ilyes Choubani   general update
541
      endif else begin ;polfrac exists
18e4331f   Ilyes Choubani   general update (f...
542

af5bca1f   Ilyes Choubani   general update
543
544
         if  ~iswinsed then begin
             cmdind_m = !dustemcgwin_ncmds.polfrac.pl
5f04fa07   Ilyes Choubani   general update
545
             cgwindow,'dustemcgwin_dataset', st, dustem_polfrac,SP_spec,SED_spec, dataset='polfrac', /refresh ,position=p_spsed, winid=winid_m,/replacecmd,cmdindex=cmdind_m, _extra=_extra
af5bca1f   Ilyes Choubani   general update
546
547
548
549
             
         endif else begin
         ;stop
             cgwindow,'dustemcgwin_dataset', st, dataset='polfrac', position=p_spsed, /addcmd, winid=winid_m, _extra=_extra & cmdind_m+=1
5f04fa07   Ilyes Choubani   general update
550
             cgwindow,'dustemcgwin_dataset', st, dustem_polfrac,SP_spec,SED_spec, dataset='polfrac', /refresh ,position=p_spsed, /addcmd, winid=winid_m, _extra=_extra & cmdind_m+=1
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             !dustemcgwin_ncmds.polfrac.pl = cmdind_m
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         endelse       
      endelse  
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    ENDIF
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    cgcontrol, winid_m, execute=1
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ENDIF 


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;stop
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if test_x then begin
    ;Generating extinction window and saving window ID
    
    if iswinext then begin
        
        if !run_pol then cgwindow,wxsize=910,wysize=658,wtitle='DUSTEMWRAP v2.0 (EXTINCTION)' else cgwindow, wtitle='DUSTEMWRAP v2.0 (EXTINCTION)';, wback='grey';,wobject=winobj_m
        winid_x = cgquery(dimensions=dim_x,/current) ;this has to be changed because the dimensions of this array change with the data sets present (extinction/emission).
        !dustemcgwin_id.ext = winid_x
        
        cgcontrol, winid_x, execute=0
        ;cgset, winid_m
        ;Plotting model string (legend)
        xxpos = 0.015
        yypos = 0.97
        ;Plotting Hydrogen column density string (legend)
        cgtext, xxpos, yypos,'Model : '+!dustem_model,color=0,/normal,charsize = 1.2,/addcmd ;& cmdind_m+=1 This is the first command in the window
        yypos = 0.95
        cgtext, xxpos, yypos,textoidl('N_{H}')+textoidl(' (H/cm^2) : ')+strmid(string(*!dustem_HCD,format='(1E10.2)'),2),color=0,/normal,charsize = 1.2,/addcmd & cmdind_x+=1
        
        ;Plotting of the number of iterations completed by the fitter
        
        ;Plotting of the number of runs
        ;Getting the width of the unrefreshed string
        widthtot=0.
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        ;cgtext, xxpos, yypos,'Runs : ',color=0,/normal,charsize=-1,width=thiswidth,/addcmd & cmdind_x+=1
        cgtext, xxpos, yypos,'Iteration : ',color=0,/normal,charsize=-1,width=thiswidth,/addcmd & cmdind_x+=1
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        widthtext = thiswidth
        widthtot+= thiswidth ;fixed width
        !dustemcgwin_ncmds.runs.txtwdth = thiswidth
        
        ;Getting the width of the refreshed string
        cgtext, xxpos, yypos,strtrim(!dustem_iter.act,2),color=0,/normal,charsize=-1,width=thiswidth,/addcmd & cmdind_x+=1
        widthtot+= thiswidth;varying width        
        
        ;These two lines will also have to      be modified when plotting the refreshed values
        xxpos = 0.015 ;1.0 - widthtot - 0.03
        yypos = 0.015
        
        ;Displaying fixed part
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        ;cgtext, xxpos, yypos,'Runs : ',color=0,/normal,charsize = 1.35,/addcmd & cmdind_x+=1
        cgtext, xxpos, yypos,'Iteration : ',color=0,/normal,charsize = 1.35,/addcmd & cmdind_x+=1
67bd858a   Ilyes Choubani   Replication of th...
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        ;Displaying refreshed part (first run . This is the command that will be replaced)
        cgtext, xxpos + widthtext + 0.015 , yypos,strtrim(!dustem_iter.act,2),color=0,/normal,charsize = 1.0,/addcmd & cmdind_x+=1
        ;saving the command id to replace it
        !dustemcgwin_ncmds.runs.pl = cmdind_x

        ;plotting of (mostly) fixed data for rchi2
        ;Since the format of the strings is specified, the length/width of the string in thex direction is fixed. 
        
        
        ;Getting the width of the unrefreshed string
        widthtot=0.
        cgtext, xxpos, yypos,textoidl('\chi^{2} : '),color=0,/normal,charsize=-1,width=thiswidth,/addcmd & cmdind_x+=1
        widthtext = thiswidth
        widthtot+= thiswidth ;fixed width
        
        ;Getting the width of the refresh.ed string
        cgtext, xxpos, yypos,strtrim(string(chi2,format=frmt2),2),color=0,/normal,charsize=-1,width=thiswidth,/addcmd & cmdind_x+=1
        widthtot+= thiswidth;varying width        
        ;saving the command string width to replace it
        !dustemcgwin_ncmds.chi2.txtwdth = thiswidth
        
        
        xxpos = 1.0 - widthtot - 0.03
        
        yypos = 0.97
        
        ;Displaying fixed part
        cgtext, xxpos, yypos,textoidl('\chi^{2} : '),color=0,/normal,charsize = 1.0,/addcmd & cmdind_x+=1
        ;Displaying refreshed part (first run . This is the command that will be replaced)
        
        cgtext, xxpos + widthtext , yypos,strtrim(string(chi2,format=frmt2),2),color=0,/normal,charsize = 1.0,/addcmd & cmdind_x+=1
        
        ;saving the command id to replace it
        !dustemcgwin_ncmds.chi2.pl = cmdind_x
  
        
        
        ;plotting of (mostly) fixed data for rchi2
        
        ;Getting the width of the unrefreshed string
        widthtot=0.
        cgtext, xxpos, yypos,textoidl('r_{\chi^{2}} : '),color=0,/normal,charsize=-1,width=thiswidth,/addcmd & cmdind_x+=1
        widthtext = thiswidth
        widthtot+= thiswidth ;fixed width
        ;!dustemcgwin_ncmds.rchi2.txtwdth1 = thiswidth
        ;Getting the width of the refreshed string
        cgtext, xxpos, yypos,strtrim(string(rchi2,format=frmt2),2),color=0,/normal,charsize=-1,width=thiswidth,/addcmd & cmdind_x+=1
        widthtot+= thiswidth;varying width        
        !dustemcgwin_ncmds.rchi2.txtwdth = thiswidth
        ;These two lines will also have to      be modified when plotting the refreshed values
        xxpos = 1.0 - widthtot - 0.03
        yypos = 0.95
        
        ;Displaying fixed part
        cgtext, xxpos, yypos,textoidl('r_{\chi^{2}} : '),color=0,/normal,charsize = 1.35,/addcmd & cmdind_x+=1
        ;Displaying refreshed part (first run . This is the command that will be replaced)
        cgtext, xxpos + widthtext , yypos,strtrim(string(rchi2,format=frmt2),2),color=0,/normal,charsize = 1.0,/addcmd & cmdind_x+=1
        ;saving the command id to replace it
        !dustemcgwin_ncmds.rchi2.pl = cmdind_x
        
        
        ;Plotting of the title of the dashboard (plot(s))
        
        ;NB: JP is right, the user should be able to set the entirety of the title.
        ;Make this block aware of the saving of the data  (from the fits table)
        
        
        ;Getting the width of the title 
        tit=string(_extra.title);
    
        cgtext, 0.3, 0.95,tit+' (RUNNING)',color=0,/normal,charsize=-1,width=thiswidth,/addcmd & cmdind_x+=1
        widthtot = thiswidth
        xxpos = (1 - thiswidth)/2
        yypos = 0.96
        
        cgtext, 0.3, 0.95,tit,color=0,/normal,charsize=-1,width=thiswidth,/addcmd & cmdind_x+=1 
        !dustemcgwin_ncmds.pltit.txtwdth = thiswidth*1.6 + (1 - widthtot)/2
          
        cgtext, xxpos, yypos,tit,color=0,/normal,charsize = 1.6,/addcmd & cmdind_x+=1
        xxpos+=thiswidth*1.6
        cgtext, xxpos, yypos,' (RUNNING)',color=0,/normal,charsize = 1.6,/addcmd & cmdind_x+=1
        
        !dustemcgwin_ncmds.pltit.pl = cmdind_x
        
    endif else begin 
    
        
        winid_x = !dustemcgwin_id.ext
        cgcontrol, winid_x, execute=0
        cgset, winid_x ;apparently specifying the window index isn't enough. This might be because of the use of cgcontrol
        
        ;Refreshing chi2 data: 
afde94a3   Ilyes Choubani   general update
699
        cmdind_x = !dustemcgwin_ncmds.chi2.pl
67bd858a   Ilyes Choubani   Replication of th...
700
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        xxpos = 1 - !dustemcgwin_ncmds.chi2.txtwdth - 0.03  
        yypos = 0.97
afde94a3   Ilyes Choubani   general update
702
        cgwindow,'cgtext', xxpos , yypos,strtrim(string(chi2,format=frmt2),2),color=0,/normal,charsize = 1.0,/replacecmd,cmdindex=cmdind_x, winid=winid_x ;& cmdind_m+=1
67bd858a   Ilyes Choubani   Replication of th...
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        ;Refreshing rchi2 data: 
afde94a3   Ilyes Choubani   general update
707
        cmdind_x = !dustemcgwin_ncmds.rchi2.pl
67bd858a   Ilyes Choubani   Replication of th...
708
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        xxpos = 1 - !dustemcgwin_ncmds.rchi2.txtwdth - 0.03  
        yypos = 0.95
afde94a3   Ilyes Choubani   general update
710
        cgwindow,'cgtext', xxpos , yypos,strtrim(string(rchi2,format=frmt2),2),color=0,/normal,charsize = 1.0,/replacecmd,cmdindex=cmdind_x, winid=winid_x ;& cmdind_m+=1
67bd858a   Ilyes Choubani   Replication of th...
711
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        ;Refreshing number of runs data: 
afde94a3   Ilyes Choubani   general update
714
        cmdind_x = !dustemcgwin_ncmds.runs.pl
67bd858a   Ilyes Choubani   Replication of th...
715
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        xxpos = 0.03 + !dustemcgwin_ncmds.runs.txtwdth*1.35  ;(because of charsize)
        yypos = 0.015
afde94a3   Ilyes Choubani   general update
717
        cgwindow,'cgtext', xxpos , yypos,strtrim(!dustem_iter.act,2),color=0,/normal,charsize = 1.0,/replacecmd,cmdindex=cmdind_x, winid=winid_x ;& cmdind_m+=1
67bd858a   Ilyes Choubani   Replication of th...
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        ;update of the title here ?
        ;NB: JP is right, the user should be able to set the entirety of the title.
        ;Make this block aware of the saving of the data  (from the fits table)
        
        if isa((*!dustem_fit).current_param_values) then begin
            ;replacing my count - 3
            tit=string(_extra.title)
afde94a3   Ilyes Choubani   general update
727
            cmdind_x = !dustemcgwin_ncmds.pltit.pl
67bd858a   Ilyes Choubani   Replication of th...
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            xxpos = !dustemcgwin_ncmds.pltit.txtwdth
            yypos = 0.96
        
afde94a3   Ilyes Choubani   general update
732
            cgwindow,'cgtext', xxpos , yypos,' (Final Run)',color=0,/normal,charsize = 1.6,/replacecmd,cmdindex=cmdind_x, winid=winid_x  
67bd858a   Ilyes Choubani   Replication of th...
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        endif
    
    endelse
    
    ;cgWindow_GetDefs,xsize=xsize,ysize=ysize
    ;cgcontrol, resize=[xsize,ysize]
    if !run_pol then begin
        ;,wback='grey'
        
        ;position arrays for plot and normalized graph
        
        ;THIS IS HARD-CODED IN A VERY SILLY WAY
        
        p_ext = [0.05,0.67,0.475,0.90]
        p_pext = [0.525,0.67,0.95,0.90]
        p_spext = [0.05,0.375,0.475,0.575] ; Should we plot this? tau_polext/tau_ext_tot. YES FOR NOW...
        p_psiext = [0.525,0.375,0.95,0.575]
        p_qext = [0.05,0.12,0.475,0.35]  
        p_uext = [0.525,0.12,0.95,0.35]
        
        np_ext = [0.05,0.60,0.475,0.67]
        np_pext = [0.525,0.60,0.95,0.67]
        np_qext = [0.05,0.05,0.475,0.12] 
        np_uext = [0.525,0.05,0.95,0.12]
        
        p_ext[1]+= 0.0125 & p_ext[3]+= 0.0125 
        p_pext[1]+= 0.0125 & p_pext[3]+= 0.0125
        p_spext[1]+= 0.0125 & p_spext[3]+= 0.0125
        p_psiext[1]+= 0.0125 & p_psiext[3]+= 0.0125
        p_qext[1]+= 0.0125 & p_qext[3]+= 0.0125
        p_uext[1]+= 0.0125 & p_uext[3]+= 0.0125
        
        np_ext[1]+= 0.0125 & np_ext[3]+= 0.0125 
        np_pext[1]+= 0.0125 & np_pext[3]+= 0.0125
        np_qext[1]+= 0.0125 & np_qext[3]+= 0.0125
        np_uext[1]+= 0.0125 & np_uext[3]+= 0.0125
        
        
          
    endif else begin
        p_ext  = [0.07,0.30,0.97,0.85]
        np_ext = [0.07,0.10,0.97,0.30]
    
    endelse

    ;Plotting of sed data axes (whether or not data is present)
    plotsym,0,/fill ;you might need to execute this again. hmm...


    ;This is not the right test the user might want to show the prediction for sed and fit the stokes parameters
    if ~test_ext then begin ; EXT data is not present (For completeness) # This is only valid when !run_pol=1
        
        cgwindow,'dustemcgwin_dataset', st, dataset='EXT', /nodata, position=p_ext, /addcmd, winid=winid_x, _extra=_extra & cmdind_x+=1
        cgwindow,'dustemcgwin_dataset', st, dataset='EXT', /nodata, /norm, position=np_ext, /addcmd, winid=winid_x, _extra=_extra & cmdind_x+=1

    endif else begin ;EXT exists

        if  ~iswinext then begin
        
afde94a3   Ilyes Choubani   general update
793
            cmdind_x = !dustemcgwin_ncmds.ext.pl
67bd858a   Ilyes Choubani   Replication of th...
794
795
            cgwindow,'dustemcgwin_dataset', st, dustem_ext,EXT_spec,dataset='EXT', /refresh ,position=p_ext, winid=winid_x,cmdindex=cmdind_x,/replacecmd,_extra=_extra     
            
afde94a3   Ilyes Choubani   general update
796
            cmdind_x = !dustemcgwin_ncmds.ext.nrm
67bd858a   Ilyes Choubani   Replication of th...
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            cgwindow,'dustemcgwin_dataset', st, dustem_ext,EXT_spec,dataset='EXT', /norm, /refresh,position=np_ext, winid=winid_x,cmdindex=cmdind_x,/replacecmd,_extra=_extra
            
            
        endif else begin
      
            cgwindow,'dustemcgwin_dataset', st, dataset='EXT', position=p_ext, /addcmd, winid=winid_x, _extra=_extra & cmdind_x+=1 
            cgwindow,'dustemcgwin_dataset', st, dustem_ext,EXT_spec, dataset='EXT', /refresh ,position=p_ext, /addcmd, winid=winid_x, _extra=_extra & cmdind_x+=1
            !dustemcgwin_ncmds.ext.pl = cmdind_x
            
            cgwindow,'dustemcgwin_dataset', st, dataset='EXT',/norm, position=np_ext, /addcmd, winid=winid_x, _extra=_extra & cmdind_x+=1 ;I think nodata can also be used too
            
            cgwindow,'dustemcgwin_dataset', st, dustem_ext,EXT_spec, dataset='EXT', /norm, /refresh,position=np_ext, /addcmd ,winid=winid_x, _extra=_extra & cmdind_x+=1
            !dustemcgwin_ncmds.ext.nrm = cmdind_x
              
        endelse       
    endelse
    
d4f8829f   Ilyes Choubani   small cleaning
814
815
    
      if !run_pol then begin 
67bd858a   Ilyes Choubani   Replication of th...
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        if ~test_qext then begin ;Qext is not present
            
            cgwindow,'dustemcgwin_dataset', st, dataset='QEXT', /nodata, position=p_qext, /addcmd, winid=winid_x, _extra=_extra & cmdind_x+=1
            cgwindow,'dustemcgwin_dataset', st, dataset='QEXT', /nodata, /norm, position=np_qext, /addcmd, winid=winid_x, _extra=_extra & cmdind_x+=1
        
        endif else begin ;Qext data is present
                
            if  ~iswinext then begin
                cmdind_x = !dustemcgwin_ncmds.qext.pl
                ;refreshing the positive_only and negative_only plots if data is present in them
07372e26   Ilyes Choubani   Corrected huge pl...
827
                cgwindow,'dustemcgwin_dataset', st, dustem_qext,QEXT_spec,dataset='QEXT',/positive_only, nodata=0, /refresh ,position=p_qext, winid=winid_x,/replacecmd,cmdindex=cmdind_x, _extra=_extra
67bd858a   Ilyes Choubani   Replication of th...
828
                
07372e26   Ilyes Choubani   Corrected huge pl...
829
                cgwindow,'dustemcgwin_dataset', st, dustem_qext,QEXT_spec, dataset='QEXT',/negative_only, nodata=0, /refresh ,position=p_qext, winid=winid_x,/replacecmd,cmdindex=cmdind_x+2, _extra=_extra
67bd858a   Ilyes Choubani   Replication of th...
830
831
                
                cmdind_x = !dustemcgwin_ncmds.qext.nrm
07372e26   Ilyes Choubani   Corrected huge pl...
832
                cgwindow,'dustemcgwin_dataset', st, dustem_qext,QEXT_spec, dataset='QEXT', /refresh, nodata=0, /norm,position=np_qext, winid=winid_x,/replacecmd,cmdindex=cmdind_x, _extra=_extra
67bd858a   Ilyes Choubani   Replication of th...
833
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            endif else begin
                
                ;Plotting of postive values if they exist (if hidden data is present it is plotted if not an empty plot is rendered)
                cgwindow,'dustemcgwin_dataset', st, dataset='QEXT', position=p_qext, /addcmd, winid=winid_x,/positive_only, _extra=_extra & cmdind_x+=1
                ;Refreshing the positive_only plot ONLY if there is data. If not do nothing
afde94a3   Ilyes Choubani   general update
839
                
07372e26   Ilyes Choubani   Corrected huge pl...
840
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                cgwindow,'dustemcgwin_dataset', st, dustem_qext,QEXT_spec, dataset='QEXT',/positive_only, /refresh ,position=p_qext, /addcmd, winid=winid_x, _extra=_extra & cmdind_x+=1
                
                !dustemcgwin_ncmds.qext.pl = cmdind_x
67bd858a   Ilyes Choubani   Replication of th...
843
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845
                
                cgwindow,'dustemcgwin_dataset', st, dataset='QEXT', position=p_qext, /addcmd, winid=winid_x,/negative_only, _extra=_extra & cmdind_x+=1
                ;Refreshing the negative_only plot ONLY if there is data. If not do nothing
07372e26   Ilyes Choubani   Corrected huge pl...
846
                cgwindow,'dustemcgwin_dataset', st, dustem_qext,QEXT_spec,dataset='QEXT',/negative_only, /refresh ,position=p_qext, /addcmd, winid=winid_x, _extra=_extra & cmdind_x+=1
67bd858a   Ilyes Choubani   Replication of th...
847
            
67bd858a   Ilyes Choubani   Replication of th...
848
                cgwindow,'dustemcgwin_dataset', st, dataset='QEXT',/norm, position=np_qext, /addcmd, winid=winid_x, _extra=_extra & cmdind_x+=1 ;I think nodata can also be uqsed too
07372e26   Ilyes Choubani   Corrected huge pl...
849
                cgwindow,'dustemcgwin_dataset', st, dustem_qext,QEXT_spec,dataset='QEXT', /norm, /refresh,position=np_qext, /addcmd, winid=winid_x, _extra=_extra & cmdind_x+=1
67bd858a   Ilyes Choubani   Replication of th...
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                !dustemcgwin_ncmds.qext.nrm = cmdind_x
                
        endelse       
      endelse
          ;stop        
        if ~test_uext then begin ;uext is not present
            
            cgwindow,'dustemcgwin_dataset', st, dataset='UEXT', /nodata, position=p_uext, /addcmd, winid=winid_x, _extra=_extra & cmdind_x+=1
            cgwindow,'dustemcgwin_dataset', st, dataset='UEXT', /nodata, /norm, position=np_uext, /addcmd, winid=winid_x, _extra=_extra & cmdind_x+=1
        
        endif else begin ;uext data is present
                
            if  ~iswinext then begin
                cmdind_x = !dustemcgwin_ncmds.uext.pl
                ;refreshing the positive_only and negative_only plots if data is present in them
f2caf3f1   Ilyes Choubani   Debugging some er...
865
                cgwindow,'dustemcgwin_dataset', st, dustem_uext,UEXT_spec, dataset='UEXT',/positive_only, nodata=0, /refresh ,position=p_uext, winid=winid_x,/replacecmd,cmdindex=cmdind_x, _extra=_extra
67bd858a   Ilyes Choubani   Replication of th...
866
                
f2caf3f1   Ilyes Choubani   Debugging some er...
867
                cgwindow,'dustemcgwin_dataset', st, dustem_uext,UEXT_spec, dataset='UEXT',/negative_only, nodata=0, /refresh ,position=p_uext, winid=winid_x,/replacecmd,cmdindex=cmdind_x+2, _extra=_extra
67bd858a   Ilyes Choubani   Replication of th...
868
                
afde94a3   Ilyes Choubani   general update
869
                cmdind_x = !dustemcgwin_ncmds.uext.nrm
07372e26   Ilyes Choubani   Corrected huge pl...
870
                cgwindow,'dustemcgwin_dataset', st, dustem_uext,UEXT_spec, dataset='UEXT', /refresh, nodata=0, /norm,position=np_uext, winid=winid_x,/replacecmd,cmdindex=cmdind_x, _extra=_extra
67bd858a   Ilyes Choubani   Replication of th...
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            endif else begin
            ;stop
                ;Plotting of postive values if they exist (if hidden data is present it is plotted if not an empty plot is rendred)
                cgwindow,'dustemcgwin_dataset', st, dataset='UEXT', position=p_uext, /addcmd, winid=winid_x,/positive_only, _extra=_extra & cmdind_x+=1
53548c91   Ilyes Choubani   Display of frozen...
876
                
67bd858a   Ilyes Choubani   Replication of th...
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                ;Refreshing the positive_only plot ONLY if there is data. If not do nothing
07372e26   Ilyes Choubani   Corrected huge pl...
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                cgwindow,'dustemcgwin_dataset', st, dustem_uext,UEXT_spec, dataset='UEXT',/positive_only, /refresh ,position=p_uext, /addcmd, winid=winid_x, _extra=_extra & cmdind_x+=1
                
                !dustemcgwin_ncmds.uext.pl = cmdind_x
67bd858a   Ilyes Choubani   Replication of th...
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                cgwindow,'dustemcgwin_dataset', st, dataset='UEXT', position=p_uext, /addcmd, winid=winid_x,/negative_only, _extra=_extra & cmdind_x+=1
                ;Refreshing the negative_only plot ONLY if there is data. If not do nothing
07372e26   Ilyes Choubani   Corrected huge pl...
884
                cgwindow,'dustemcgwin_dataset', st, dustem_uext,UEXT_spec, dataset='UEXT',/negative_only, /refresh ,position=p_uext, /addcmd, winid=winid_x, _extra=_extra & cmdind_x+=1
67bd858a   Ilyes Choubani   Replication of th...
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                cgwindow,'dustemcgwin_dataset', st, dataset='UEXT',/norm, position=np_uext, /addcmd, winid=winid_x, _extra=_extra & cmdind_x+=1 ;I think nodata can also be uused too
07372e26   Ilyes Choubani   Corrected huge pl...
888
                cgwindow,'dustemcgwin_dataset', st, dustem_uext,UEXT_spec, dataset='UEXT', /norm, /refresh,position=np_uext, /addcmd, winid=winid_x, _extra=_extra & cmdind_x+=1
67bd858a   Ilyes Choubani   Replication of th...
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                !dustemcgwin_ncmds.uext.nrm = cmdind_x
                
        endelse       
      endelse
      
      if ~test_psi_ext then begin ; psi_ext data is not present (For completeness) # This is only valid when !run_pol=1
          
07372e26   Ilyes Choubani   Corrected huge pl...
896
          cgwindow,'dustemcgwin_dataset', st, dataset='PSI_EXT', /nodata, position=p_psiext, /addcmd, winid=winid_x, _extra=_extra  & cmdind_x+=1
67bd858a   Ilyes Choubani   Replication of th...
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      endif else begin ;psi_ext exists

          if  ~iswinext then begin
              cmdind_x = !dustemcgwin_ncmds.psi_ext.pl
07372e26   Ilyes Choubani   Corrected huge pl...
902
              cgwindow,'dustemcgwin_dataset', st, dustem_psi_ext,PSIEXT_spec, dataset='PSI_EXT', /refresh ,position=p_psiext, winid=winid_x,/replacecmd,cmdindex=cmdind_x, _extra=_extra
67bd858a   Ilyes Choubani   Replication of th...
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          endif else begin
          ;stop
              cgwindow,'dustemcgwin_dataset', st, dataset='psi_ext', position=p_psiext, /addcmd, winid=winid_x, _extra=_extra & cmdind_x+=1
07372e26   Ilyes Choubani   Corrected huge pl...
907
              cgwindow,'dustemcgwin_dataset', st, dustem_psi_ext,PSIEXT_spec, dataset='psi_ext', /refresh ,position=p_psiext, /addcmd, winid=winid_x, _extra=_extra & cmdind_x+=1
67bd858a   Ilyes Choubani   Replication of th...
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              !dustemcgwin_ncmds.psi_ext.pl = cmdind_x

          endelse       
      endelse
        
      
      if ~test_polext then begin ; polext data is not present (For completeness) # This is only valid when !run_pol=1
          
          cgwindow,'dustemcgwin_dataset', st, dataset='polext', /nodata, position=p_pext, /addcmd, winid=winid_x, _extra=_extra & cmdind_x+=1
          cgwindow,'dustemcgwin_dataset', st, dataset='polext', /nodata, /norm, position=np_pext, /addcmd, winid=winid_x, _extra=_extra & cmdind_x+=1

      endif else begin ;polext exists

          if  ~iswinext then begin
              cmdind_x = !dustemcgwin_ncmds.polext.pl
              cgwindow,'dustemcgwin_dataset', st, dustem_polext,POLEXT_spec, dataset='polext', /refresh ,position=p_pext, winid=winid_x,/replacecmd,cmdindex=cmdind_x, _extra=_extra
              cmdind_x = !dustemcgwin_ncmds.polext.nrm
              cgwindow,'dustemcgwin_dataset', st, dustem_polext,POLEXT_spec, dataset='polext', /norm, /refresh,position=np_pext, winid=winid_x,/replacecmd,cmdindex=cmdind_x, _extra=_extra
          endif else begin
          ;stop
              cgwindow,'dustemcgwin_dataset', st, dataset='polext', position=p_pext, /addcmd, winid=winid_x, _extra=_extra  & cmdind_x+=1  
              cgwindow,'dustemcgwin_dataset', st, dustem_polext,POLEXT_spec, dataset='polext', /refresh ,position=p_pext, /addcmd, winid=winid_x, _extra=_extra & cmdind_x+=1
              !dustemcgwin_ncmds.polext.pl = cmdind_x
              cgwindow,'dustemcgwin_dataset', st, dataset='polext',/norm, position=np_pext, /addcmd, winid=winid_x, _extra=_extra & cmdind_x+=1 ;I think nodata can also be upolsed too
              cgwindow,'dustemcgwin_dataset', st, dustem_polext,POLEXT_spec, dataset='polext', /norm, /refresh,position=np_pext, /addcmd, winid=winid_x, _extra=_extra & cmdind_x+=1
              !dustemcgwin_ncmds.polext.nrm = cmdind_x
          endelse
      endelse      
      
      
      if ~test_fpolext then begin ; fpolext data is not present (For completeness) # This is only valid when !run_pol=1
          
          cgwindow,'dustemcgwin_dataset', st, dataset='fpolext', /nodata, position=p_spext, /addcmd, winid=winid_x, _extra=_extra  & cmdind_x+=1

      endif else begin ;fpolext exists

          if  ~iswinext then begin
              cmdind_x = !dustemcgwin_ncmds.fpolext.pl
              cgwindow,'dustemcgwin_dataset', st, dustem_fpolext,SPEXT_spec,EXT_spec, dataset='fpolext', /refresh ,position=p_spext, winid=winid_x,/replacecmd,cmdindex=cmdind_x, _extra=_extra
              
          endif else begin
07372e26   Ilyes Choubani   Corrected huge pl...
949
          
67bd858a   Ilyes Choubani   Replication of th...
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              cgwindow,'dustemcgwin_dataset', st, dataset='fpolext', position=p_spext, /addcmd, winid=winid_x, _extra=_extra & cmdind_x+=1
              cgwindow,'dustemcgwin_dataset', st, dustem_fpolext,SPEXT_spec,EXT_spec, dataset='fpolext', /refresh ,position=p_spext, /addcmd, winid=winid_x, _extra=_extra & cmdind_x+=1
              !dustemcgwin_ncmds.fpolext.pl = cmdind_x

          endelse       
      endelse  
      

    ENDIF
        
67bd858a   Ilyes Choubani   Replication of th...
960
    cgcontrol, winid_x, execute=1
d4f8829f   Ilyes Choubani   small cleaning
961
     
67bd858a   Ilyes Choubani   Replication of th...
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ENDIF 


5f04fa07   Ilyes Choubani   general update
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IF ~iswinprms THEN BEGIN;(NEXT RUNS)
    
    winid_prms = !dustemcgwin_id.prms
    cgcontrol, winid_prms, execute=0
    cgset, winid_prms
    cmdind_prms = !dustemcgwin_ncmds.prms.pl
    cgwindow,'dustemcgwin_dataset', st, res, errors, p_dim,dataset='PARAMETERS', /refresh, winid=winid_prms,/replacecmd,cmdindex=cmdind_prms, _extra=_extra
    cgcontrol, winid_prms ,execute=1 
ENDIF ELSE BEGIN ;(FIRST RUN)
    cgwindow,wxsize=350,wysize=200,wtitle='DUSTEMWRAP v2.0 (PARAMETERS)' ; keeping the same y dimension of the emission/extinction plot? 
    winid_prms = cgquery(dimensions=dim_prms,/current) ;we don't need the dimension of the window so far/ I don't know why I needed it before
    cgcontrol, winid_prms, execute=0
    !dustemcgwin_id.prms = winid_prms
    cgwindow,'dustemcgwin_dataset', st, res, errors, p_dim,dataset='PARAMETERS', /addcmd , winid=winid_prms,_extra=_extra ;& cmdind_prms+=1
    cgwindow,'dustemcgwin_dataset', st, res, errors, p_dim,dataset='PARAMETERS', /addcmd, /refresh , winid=winid_prms, _extra=_extra & cmdind_prms+=1
    !dustemcgwin_ncmds.prms.pl = cmdind_prms
    cgcontrol, winid_prms ,execute=1        
ENDELSE 

2910e8ce   Ilyes Choubani   Draft version of ...
985

67bd858a   Ilyes Choubani   Replication of th...
986
;DISPLAY OF PLUGINS HAS A SMALL ISSUE
d4f8829f   Ilyes Choubani   small cleaning
987
IF (tag_names(*!dustem_plugin))(0) NE 'NONE' THEN BEGIN  
67bd858a   Ilyes Choubani   Replication of th...
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    IF ~iswinplgns THEN BEGIN;(NEXT RUNS)
        
        winid_plgns = !dustemcgwin_id.plgns
        cgcontrol, winid_plgns, execute=0
        cgset, winid_plgns
        cmdind_plgns = !dustemcgwin_ncmds.plgns.pl
        cgwindow,'dustemcgwin_dataset', st, res, errors, p_dim,dataset='PLUGINS', /refresh, winid=winid_plgns,/replacecmd,cmdindex=cmdind_plgns, _extra=_extra
        cgcontrol, winid_plgns ,execute=1 
    ENDIF ELSE BEGIN ;(FIRST RUN)
        cgwindow,wxsize=350,wysize=200,wtitle='DUSTEMWRAP v2.0 (PLUGINS)' ; keeping the same y dimension of the emission/extinction plot? 
        winid_plgns = cgquery(dimensions=dim_plgns,/current) ;we don't need the dimension of the window so far/ I don't know why I needed it before
        cgcontrol, winid_plgns, execute=0
        !dustemcgwin_id.plgns = winid_plgns
        cgwindow,'dustemcgwin_dataset', st, res, errors, p_dim,dataset='PLUGINS', /addcmd , winid=winid_plgns,_extra=_extra ;& cmdind_prms+=1
        cgwindow,'dustemcgwin_dataset', st, res, errors, p_dim,dataset='PLUGINS', /addcmd, /refresh , winid=winid_plgns, _extra=_extra & cmdind_plgns+=1
        !dustemcgwin_ncmds.plgns.pl = cmdind_plgns
        cgcontrol, winid_plgns ,execute=1        
    ENDELSE
     
ENDIF
2910e8ce   Ilyes Choubani   Draft version of ...
1009

2910e8ce   Ilyes Choubani   Draft version of ...
1010
END