FUNCTION dustem_compute_polsed,p_dim,st,P_spec,SP_spec,dustem_polfrac,out_st=out_st,dustem_sed=dustem_sed,_extra=extra

;+
; NAME:
;    dustem_compute_polsed
; PURPOSE:
;    Computes an SED from a given Dustem spectrum
; CATEGORY:
;    Dustem
; CALLING SEQUENCE:
;    sed=dustem_compute_polsed(p_dim[,st=][,_extra=][,/help])
; INPUTS:
;    p_dim      = parameter values
; OPTIONAL INPUT PARAMETERS:

;    st        = Dustem structure

; OUTPUTS:

;    sed         : computed SED for filters in !dustem_data
;    dustem_qsed : SED in Q
;    dustem_used : SED in U

; OPTIONAL OUTPUT PARAMETERS:

;    st        = Dustem output structure

; ACCEPTED KEY-WORDS:
;    help      = If set, print this help
; COMMON BLOCKS:
;    None
; SIDE EFFECTS:
;    None
; RESTRICTIONS:
;    The dustem idl wrapper must be installed
; PROCEDURE:
;    None
; EXAMPLES
;    
; MODIFICATION HISTORY:
;    Written by J.-Ph. Bernard
;    see evolution details on the dustem cvs maintained at CESR
;    Contact J.-Ph. Bernard (Jean-Philippe.Bernard@cesr.fr) in case of problems.

IF keyword_set(help) THEN BEGIN
  doc_library,'dustem_compute_polsed'
  dustem_polsed=0.
  goto,the_end
ENDIF

IF not keyword_set(st) THEN BEGIN

  dustem_activate_plugins,p_dim/(*(*!dustem_fit).param_init_values),st
  ;st=dustem_run(p_dim)

ENDIF

If keyword_set(result) THEN result=st
fact = 1.e4*(*!dustem_HCD)/(4.*!pi)/(3.e8/1.e-6/(st.polsed).wav)*1.e20/1.e7

P_spec = st.polsed.em_tot*fact ;This is Polarized intensity P
stI = st.sed.em_tot*fact    ;This is Total intensity I

out=0.

Nwaves=(size(P_spec))[1]

frac=P_spec/stI

tes=where(finite(frac) eq 0)
frac(tes)=0.

;This block was added to generate the polarization fraction spectrum with the plugins contributions. 
;smallp (polfrac) is naturally not an additive quantity.



;NB: if plugins that replace the total emission given by the fortran executable exist, 
;the need to add a block with a 'REPLPACE_SED' scope as for the 'REPLACE_POLSED' below, may arise.

scopes=tag_names((*!dustem_plugin)) 
IF scopes[0] NE 'NONE' THEN BEGIN
;IF ptr_valid(!dustem_plugin) THEN BEGIN
  for i=0L,n_tags(*!dustem_plugin)-1 do begin
    if total(strsplit((*(*!dustem_plugin).(i).scope),'+',/extract) eq 'ADD_SED') then stI+=(*(*!dustem_plugin).(i).spec)[*,0]
  endfor
ENDIF

IF scopes[0] NE 'NONE' THEN BEGIN

    FOR i=0L,n_tags(*!dustem_plugin)-1 DO BEGIN   

        IF total(strsplit((*(*!dustem_plugin).(i).scope),'+',/extract) EQ 'REPLACE_POLSED') THEN BEGIN

            Q_spec=(*(*!dustem_plugin).(i).spec)[*,1]
            U_spec=(*(*!dustem_plugin).(i).spec)[*,2]

            ;make sure sti hasn't been replaced. But this is not happening in the near future

            
        ENDIF 

    ENDFOR    

ENDIF
    

    IF ~isa(Q_spec) && ~isa(U_spec) THEN BEGIN

        polar_ippsi2iqu,stI,Q_spec,U_spec,frac,replicate(!dustem_psi,Nwaves) ;the user needs to set this pointer somewhere

        SP_spec = frac 
    ENDIF

IF scopes[0] NE 'NONE' THEN BEGIN    
       

    FOR i=0L,n_tags(*!dustem_plugin)-1 DO BEGIN

        IF total(strsplit((*(*!dustem_plugin).(i).scope),'+',/extract) EQ 'ADD_POLSED') THEN BEGIN

            Q_spec+=(*(*!dustem_plugin).(i).spec)[*,1]
            U_spec+=(*(*!dustem_plugin).(i).spec)[*,2]

            
        ENDIF
      
    ENDFOR

ENDIF

P_spec=sqrt(Q_spec^2+U_spec^2)

SP_spec=P_spec/Sti

dustem_polsed = (*!dustem_data.qsed).values * 0.

    
if not isarray(P_spec) THEN stop ;I don't understand this test. The only thing it can indicate is a problem with the dust parameters or the fortran executable. But in my opinion these tests would be  

IF !dustem_do_cc NE 0 AND !dustem_never_do_cc EQ 0 THEN BEGIN
  message,'DOING color correction calculations',/info
ENDIF ELSE BEGIN
  message,'SKIPPING color correction calculations',/info
ENDELSE

ind_polsed=where((*!dustem_data.qsed).filt_names NE 'SPECTRUM',count_polsed)  

IF count_polsed NE 0 THEN BEGIN

  filter_names=((*!dustem_data.qsed).filt_names)(ind_polsed)

  spolsed=dustem_cc(st.polsed.wav,P_spec,filter_names,cc=cc)

  dustem_polsed[ind_polsed]=spolsed

ENDIF

;For spectrum data points, interpolate in log-log.

;Linear interpolation leads to wrong values, in particular where few
;wavelengths points exist in the model (long wavelengths).

;I believe this to be automatic because the provided dustem spectra are already sampled on a log-log grid.

ind_spec=where((*!dustem_data.qsed).filt_names EQ 'SPECTRUM',count_spec) 

IF count_spec NE 0 THEN dustem_polsed(ind_spec)=interpol(P_spec,st.polsed.wav,(((*!dustem_data.qsed).wav)(ind_spec)))

out_st=st

;GENERATING THE INTERPOLATES FOR POLFRAC (dustem_polfrac)
if !run_lin then begin

    
    if not keyword_set(dustem_sed) then dustem_sed = dustem_compute_sed(p_dim,st,SED_spec)
          		

    If n_elements(dustem_sed) ne n_elements(dustem_polsed) then begin                            
        if n_elements(dustem_sed) gt n_elements(dustem_polsed) then begin 
      
            dustem_polsed_x = dustem_polsed
            dustem_sed_x = dustem_polsed ;meaning dustem_sed needs to be modified
      
            nwaves = n_elements(dustem_polsed)
      
      
              for i=0L,nwaves-1 do begin
      
                  j=where((*!dustem_data.sed).wav EQ (*!dustem_data.polfrac).wav(i),testwav)
                  if testwav ne 0 then dustem_sed_x(i) = dustem_sed(j(0))                                    
      
              endfor
      
        endif ELSE begin
        
            dustem_polsed_x = dustem_sed
            dustem_sed_x = dustem_sed ;meaning dustem_polsed needs to be modified
        
            nwaves = n_elements(dustem_sed)
        
            for i=0L,nwaves-1 do begin
                j=where((*!dustem_data.sed).wav EQ (*!dustem_data.polfrac).wav(i),testwav)
                if testwav ne 0 then dustem_polsed_x(i) = dustem_polsed(j(0))                                    
            endfor
          
        
        ENDELSE
    
    endif ELSE BEGIN
        
        dustem_polsed_x = dustem_polsed 
        dustem_sed_x = dustem_sed
    
    ENDELSE
    
    dustem_polfrac = dustem_polsed_x/dustem_sed_x 
	       
ENDIF

;clean pointers
heap_gc

the_end:

RETURN,dustem_polsed

END