PRO dustemwrap_plot,p_dim,st,dustem_sed,dustem_qsed,dustem_used,dustem_polsed,dustem_polfrac,_extra=_extra ;, dustem_polfrac

;NB/ the old POLFRAC treatment from mpfit_run will have to be copied over here when plotting the polarization fraction.  

;JP had this amazing idea about the plotting of the used parameters and plugins in (a) seperate window(s).
;I will definitely do it as soon as I am done with the main display.

;When you replace a command in cgoplot you will need to replace the cgerrplot commands as well. 
;THIS IS VERY IMPORTANT DO NOT FORGET THIS.
;YOU WILL NEEED A COUNTER FOR THE COMMAND INDICES.... You need to find a solution for this. 
;or know which is the index of the command that is targeted.

;The procedure takes the _extra keyword but the plotting inside does not take the full structure
;but rather the needed parts. 
;when the "_extra_filtering" procedure is finished. The structure will be filtered and the routine will be more secure.
    
;NB (VERY IMPORTANT): in order to refresh the cgoplots maybe I should use the replacecmd keyword.
;This line runs but does it do the job?: ,cmdindex=command_index,replacecmd=command_index you ne
;THAT LINE FOR ALL THE CGOPLOTS LINES

;NB: maybe change the position arrays instead of creating two giant loops. 
;THIS IS A REALLY INTERESTING IDEA


;It seems more adequate to execute dustem_compute_sed/polsed/stokes here instead of this block

;especially that dustem_activate_plugins runs the executable already but does not output it.

;NB: There is an implicit assumption that st and dustem_sed and others are set simultaneously. 

;As stated above I do not think that I need this block. This will need to be corrected.
IF not keyword_set(st) THEN BEGIN
  ;Activation of the plugins is needed because of the plotting of the total emission model that includes them. 
  dustem_activate_plugins,p_dim/(*(*!dustem_fit).param_init_values)  ; 0/0 division case?
  st=dustem_run(p_dim)  
ENDIF

;stop

;If the interpolates arrays are not present (dustem_sed, etc...) run: 
;dustem_compute_sed etc to generate them. 

;!const.c ;speed of light in vacuum.

;Generating a first resizable window (for emission or extinction elements)

;if ~windowavailable(cgquery()) then begin

;LIST OF TESTS THAT NEED TO BE RAN SO THAT THE PLOTTING OF THE MODEL SPECTRA OCCURS

test_sed = isa(!dustem_show.sed)
test_ext = isa(!dustem_show.ext)

if !run_pol then begin
    test_polext = isa(!dustem_show.polext)
    test_polsed = isa(!dustem_show.polsed)
    test_polfrac = isa(!dustem_show.polfrac)
    test_psi_em = isa(!dustem_show.psi_em)
    test_psi_ext = isa(!dustem_show.psi_ext)
    test_qsed = isa(!dustem_show.qsed)
    test_used = isa(!dustem_show.used)
    test_qext = isa(!dustem_show.qext)
    test_uext = isa(!dustem_show.uext)
    test_m = test_sed or test_polsed or test_polfrac or test_qsed or test_used or test_psi_em
    test_x = test_ext or test_polext or test_qext or test_uext or test_psi_ext
endif else begin
    test_m = test_sed 
    test_x = test_ext 
endelse

;testing on the fitting of emission vs extinction data

;I could create a procedure for colors for the plugins but I am just going to define an array for now

;clrs_plgns = (colortable(38))(uniq(colortable(38))) ;CT RAINBOW18

n_plgns = n_tags(*!dustem_plugin)

;I have decided to keep track of the command index manually as I did not find any command online that does this.
cmdind_m = 0 ;for emission
cmdind_x = 0 ;for extinction

;#YOU NEED TO REPLACE THE QSED AND USED SCOPES WITH A SINGLE POLSED ONE 

;ADDING PLUGIN(S) TO SPECTRUM----------------

;these following indices will be used to change the keep the same information in the _extra structure
;this is an initial solution until I finish coding the _extra-filtering procedure. 

iswinsed = !dustemcgwin_id.sed EQ la_undef()
iswinext = !dustemcgwin_id.ext EQ la_undef()

;plotstrct = !p
degtorad = !pi/180 ;factor that the arctan will be devided by in order to have an axis in degrees. Talk to JP maybe he wants angle in radians.

;This should probably be moved to 'dustem_mpfit_run'. !!!!!!!
;for now I am coding it like this. 

if !run_pol then dustem_psi_em = 0.5*atan(dustem_used,dustem_qsed)/degtorad

;if iswinsed then begin ;I believe the iswin test should be below the case condition because I am not copying all the first 'HUGE LOOP' but rather replacing the positional arrays.            
if test_m then begin
    ;do you need an if !run_pol condition here?
    ;!run_pol=1 ;test. Needs to be commented asap.
    ;Generating emission window and saving window ID
    
    if iswinsed then begin

        if !run_pol then cgwindow,wxsize=910,wysize=658,wtitle='DUSTEMWRAP v2.0 (EMISSION)' else cgwindow, wtitle='DUSTEMWRAP v2.0 (EMISSION)';, wback='grey';,wobject=winobj_m

        winid_m = cgquery(dimensions=dim_m,/current) ;this has to be changed because the dimensions of this array change with the data sets present (extinction/emission).
        !dustemcgwin_id.sed = winid_m
        
    endif else winid_m = !dustemcgwin_id.sed
    
    
    ;cgWindow_GetDefs,xsize=xsize,ysize=ysize
    ;cgcontrol, resize=[xsize,ysize]
    if !run_pol then begin

        ;,wback='grey'

        
        ;position arrays for plot and normalized graph

        
        
        ;THIS IS HARD-CODED IN A VERY SILLY WAY

        
        p_sed = [0.05,0.67,0.475,0.90]
        p_psed = [0.525,0.67,0.95,0.90]

        p_spsed = [0.05,0.375,0.475,0.575]

        p_psised = [0.525,0.375,0.95,0.575]

        p_qsed = [0.05,0.12,0.475,0.35]  ;FIX THESE POSITIONS. 
        p_used = [0.525,0.12,0.95,0.35]
        

        np_sed = [0.05,0.60,0.475,0.67]

        np_psed = [0.525,0.60,0.95,0.67]
        np_qsed = [0.05,0.05,0.475,0.12] 
        np_used = [0.525,0.05,0.95,0.12]

        
        p_sed[1]+= 0.0125 & p_sed[3]+= 0.0125 
        p_psed[1]+= 0.0125 & p_psed[3]+= 0.0125
        p_spsed[1]+= 0.0125 & p_spsed[3]+= 0.0125
        p_psised[1]+= 0.0125 & p_psised[3]+= 0.0125
        p_qsed[1]+= 0.0125 & p_qsed[3]+= 0.0125
        p_used[1]+= 0.0125 & p_used[3]+= 0.0125
        
        np_sed[1]+= 0.0125 & np_sed[3]+= 0.0125 
        np_psed[1]+= 0.0125 & np_psed[3]+= 0.0125
        np_qsed[1]+= 0.0125 & np_qsed[3]+= 0.0125
        np_used[1]+= 0.0125 & np_used[3]+= 0.0125
        
        
          

    endif else begin
        p_sed  = [0.07,0.30,0.97,0.85]
        np_sed = [0.07,0.10,0.97,0.30]

    endelse

    ;Plotting of sed data axes (whether or not data is present)
    plotsym,0,/fill ;you might need to execute this again. hmm...

    
    cgcontrol, execute=0
    

    ;This is not the right test the user might want to show the prediction for sed and fit the stokes parameters

    if ~test_sed then begin ; SED data is not present (For completeness) # This is only valid when !run_pol=1
        

        cgwindow,'dustemcgwin_dataset', st, dataset='SED', /nodata, position=p_sed, /addcmd, winid=winid_m, _extra=_extra 
        cgwindow,'dustemcgwin_dataset', st, dataset='SED', /norm, /nodata, position=np_sed, /addcmd, winid=winid_m, _extra=_extra & cmdind_m+=1

    endif else begin ;SED exists

       if  ~iswinsed then begin
           cmdind_m = !dustemcgwin_ncmds.sed.pl
           cgwindow,'dustemcgwin_dataset', st, dustem_sed, dataset='SED', /refresh ,position=p_sed, winid=winid_m,/replacecmd,cmdindex=cmdind_m, _extra=_extra
           cmdind_m = !dustemcgwin_ncmds.sed.nrm
           cgwindow,'dustemcgwin_dataset', st, dustem_sed, dataset='SED', /refresh, /norm,position=np_sed, winid=winid_m,/replacecmd,cmdindex=cmdind_m, _extra=_extra
       endif else begin
      ; stop
           cgwindow,'dustemcgwin_dataset', st, dataset='SED', position=p_sed, /addcmd, winid=winid_m, _extra=_extra   
           cgwindow,'dustemcgwin_dataset', st, dustem_sed, dataset='SED', /refresh ,position=p_sed, /addcmd, winid=winid_m, _extra=_extra & cmdind_m+=1
           !dustemcgwin_ncmds.sed.pl = cmdind_m
           cgwindow,'dustemcgwin_dataset', st, dataset='SED',/norm, position=np_sed, /addcmd, winid=winid_m, _extra=_extra & cmdind_m+=1 ;I think nodata can also be used too
           cgwindow,'dustemcgwin_dataset', st, dustem_sed, dataset='SED', /refresh, /norm,position=np_sed, /addcmd, winid=winid_m, _extra=_extra & cmdind_m+=1
           !dustemcgwin_ncmds.sed.nrm = cmdind_m
       endelse       
    endelse
    
    ;if ~!run_pol then begin;I don't think the order of the  ;goto, end_m
      if !run_pol then begin ;then goto, end_m

        if ~test_qsed then begin ;Qsed is not present
            
            cgwindow,'dustemcgwin_dataset', st, dataset='QSED', /nodata, position=p_qsed, /addcmd, winid=winid_m, _extra=_extra & cmdind_m+=1
            cgwindow,'dustemcgwin_dataset', st, dataset='QSED', /norm, /nodata, position=np_qsed, /addcmd, winid=winid_m, _extra=_extra & cmdind_m+=1

        endif else begin ;Qsed data is present
               
            if  ~iswinsed then begin
                cmdind_m = !dustemcgwin_ncmds.qsed.pl
                ;refreshing the positive_only and negative_only plots if data is present in them
                cgwindow,'dustemcgwin_dataset', st, dustem_qsed, dataset='QSED',/positive_only, /refresh, nodata=0 ,position=p_qsed, winid=winid_m,/replacecmd,cmdindex=cmdind_m, _extra=_extra
                cgwindow,'dustemcgwin_dataset', st, dustem_qsed, dataset='QSED',/negative_only, /refresh, nodata=0 ,position=p_qsed, winid=winid_m,/replacecmd,cmdindex=cmdind_m, _extra=_extra
                cmdind_m = !dustemcgwin_ncmds.qsed.nrm
                cgwindow,'dustemcgwin_dataset', st, dustem_qsed, dataset='QSED', /refresh, nodata=0, /norm,position=np_qsed, winid=winid_m,/replacecmd,cmdindex=cmdind_m, _extra=_extra
            endif else begin
            ;stop
                ;Plotting of postive values if they exist (if hidden data is present it is plotted if not an empty plot is rendred)
                cgwindow,'dustemcgwin_dataset', st, dataset='QSED', position=p_qsed, /addcmd, winid=winid_m,/positive_only, _extra=_extra & cmdind_m+=1
                ;Refreshing the positive_only plot ONLY if there is data. If not do nothing
                cgwindow,'dustemcgwin_dataset', st, dustem_qsed, dataset='QSED',/positive_only, /refresh ,position=p_qsed, /addcmd, winid=winid_m, _extra=_extra & cmdind_m+=1
                
                cgwindow,'dustemcgwin_dataset', st, dataset='QSED', position=p_qsed, /addcmd, winid=winid_m,/negative_only, _extra=_extra & cmdind_m+=1
                ;Refreshing the negative_only plot ONLY if there is data. If not do nothing
                cgwindow,'dustemcgwin_dataset', st, dustem_qsed, dataset='QSED',/negative_only, /refresh ,position=p_qsed, /addcmd, winid=winid_m, _extra=_extra & cmdind_m+=1
                
                !dustemcgwin_ncmds.qsed.pl = cmdind_m
                
                cgwindow,'dustemcgwin_dataset', st, dataset='QSED',/norm, position=np_qsed, /addcmd, winid=winid_m, _extra=_extra & cmdind_m+=1 ;I think nodata can also be uqsed too
                cgwindow,'dustemcgwin_dataset', st, dustem_qsed, dataset='QSED', /refresh, /norm,position=np_qsed, /addcmd, winid=winid_m, _extra=_extra & cmdind_m+=1
                !dustemcgwin_ncmds.qsed.nrm = cmdind_m
        endelse       
      endelse
   ;          
        if ~test_used then begin ;used is not present
            
            cgwindow,'dustemcgwin_dataset', st, dataset='USED', /nodata, position=p_used, /addcmd, winid=winid_m, _extra=_extra & cmdind_m+=1
            cgwindow,'dustemcgwin_dataset', st, dataset='USED', /norm, /nodata, position=np_used, /addcmd, winid=winid_m, _extra=_extra & cmdind_m+=1

        endif else begin ;used data is present
               
            if  ~iswinsed then begin
                cmdind_m = !dustemcgwin_ncmds.used.pl
                ;refreshing the positive_only and negative_only plots if data is present in them
                cgwindow,'dustemcgwin_dataset', st, dustem_used, dataset='USED',/positive_only, /refresh, nodata=0 ,position=p_used, winid=winid_m,/replacecmd,cmdindex=cmdind_m, _extra=_extra
                cgwindow,'dustemcgwin_dataset', st, dustem_used, dataset='USED',/negative_only, /refresh, nodata=0 ,position=p_used, winid=winid_m,/replacecmd,cmdindex=cmdind_m, _extra=_extra
                cmdind_m = !dustemcgwin_ncmds.used.nrm
                cgwindow,'dustemcgwin_dataset', st, dustem_used, dataset='USED', /refresh, nodata=0, /norm,position=np_used, winid=winid_m,/replacecmd,cmdindex=cmdind_m, _extra=_extra
            endif else begin
            ;stop
                ;Plotting of postive values if they exist (if hidden data is present it is plotted if not an empty plot is rendred)
                cgwindow,'dustemcgwin_dataset', st, dataset='USED', position=p_used, /addcmd, winid=winid_m,/positive_only, _extra=_extra & cmdind_m+=1
                ;Refreshing the positive_only plot ONLY if there is data. If not do nothing
                cgwindow,'dustemcgwin_dataset', st, dustem_used, dataset='USED',/positive_only, /refresh ,position=p_used, /addcmd, winid=winid_m, _extra=_extra & cmdind_m+=1
                
                cgwindow,'dustemcgwin_dataset', st, dataset='USED', position=p_used, /addcmd, winid=winid_m,/negative_only, _extra=_extra & cmdind_m+=1
                ;Refreshing the negative_only plot ONLY if there is data. If not do nothing
                cgwindow,'dustemcgwin_dataset', st, dustem_used, dataset='USED',/negative_only, /refresh ,position=p_used, /addcmd, winid=winid_m, _extra=_extra & cmdind_m+=1
                
                !dustemcgwin_ncmds.used.pl = cmdind_m
                
                cgwindow,'dustemcgwin_dataset', st, dataset='USED',/norm, position=np_used, /addcmd, winid=winid_m, _extra=_extra & cmdind_m+=1 ;I think nodata can also be uused too
                cgwindow,'dustemcgwin_dataset', st, dustem_used, dataset='USED', /refresh, /norm,position=np_used, /addcmd, winid=winid_m, _extra=_extra & cmdind_m+=1
                !dustemcgwin_ncmds.used.nrm = cmdind_m
        endelse       
      endelse
      
      if ~test_psi_em then begin ; psi_em data is not present (For completeness) # This is only valid when !run_pol=1
          
          cgwindow,'dustemcgwin_dataset', st, dataset='psi_em', /nodata, position=p_psised, /addcmd, winid=winid_m, _extra=_extra  & cmdind_m+=1

      endif else begin ;psi_em exists

         if  ~iswinsed then begin
             cmdind_m = !dustemcgwin_ncmds.psi_em.pl
             cgwindow,'dustemcgwin_dataset', st, dustem_psi_em, dataset='psi_em', /refresh ,position=p_psised, winid=winid_m,/replacecmd,cmdindex=cmdind_m, _extra=_extra

         endif else begin
         ;stop
             cgwindow,'dustemcgwin_dataset', st, dataset='psi_em', position=p_psised, /addcmd, winid=winid_m, _extra=_extra & cmdind_m+=1
             cgwindow,'dustemcgwin_dataset', st, dustem_psi_em, dataset='psi_em', /refresh ,position=p_psised, /addcmd, winid=winid_m, _extra=_extra & cmdind_m+=1
             !dustemcgwin_ncmds.psi_em.pl = cmdind_m

         endelse       
      endelse

      
      if ~test_polsed then begin ; polsed data is not present (For completeness) # This is only valid when !run_pol=1
          
          cgwindow,'dustemcgwin_dataset', st, dataset='polsed', /nodata, position=p_psed, /addcmd, winid=winid_m, _extra=_extra & cmdind_m+=1
          cgwindow,'dustemcgwin_dataset', st, dataset='polsed', /norm, /nodata, position=np_psed, /addcmd, winid=winid_m, _extra=_extra & cmdind_m+=1

      endif else begin ;polsed exists

         if  ~iswinsed then begin
             cmdind_m = !dustemcgwin_ncmds.polsed.pl
             cgwindow,'dustemcgwin_dataset', st, dustem_polsed, dataset='polsed', /refresh ,position=p_psed, winid=winid_m,/replacecmd,cmdindex=cmdind_m, _extra=_extra
             cmdind_m = !dustemcgwin_ncmds.polsed.nrm
             cgwindow,'dustemcgwin_dataset', st, dustem_polsed, dataset='polsed', /refresh, /norm,position=np_psed, winid=winid_m,/replacecmd,cmdindex=cmdind_m, _extra=_extra
         endif else begin
         ;stop
             cgwindow,'dustemcgwin_dataset', st, dataset='polsed', position=p_psed, /addcmd, winid=winid_m, _extra=_extra  & cmdind_m+=1  
             cgwindow,'dustemcgwin_dataset', st, dustem_polsed, dataset='polsed', /refresh ,position=p_psed, /addcmd, winid=winid_m, _extra=_extra & cmdind_m+=1
             !dustemcgwin_ncmds.polsed.pl = cmdind_m
             cgwindow,'dustemcgwin_dataset', st, dataset='polsed',/norm, position=np_psed, /addcmd, winid=winid_m, _extra=_extra & cmdind_m+=1 ;I think nodata can also be upolsed too
             cgwindow,'dustemcgwin_dataset', st, dustem_polsed, dataset='polsed', /refresh, /norm,position=np_psed, /addcmd, winid=winid_m, _extra=_extra & cmdind_m+=1
             !dustemcgwin_ncmds.polsed.nrm = cmdind_m
         endelse       
      endelse      

      
      
      
      if ~test_polfrac then begin ; polfrac data is not present (For completeness) # This is only valid when !run_pol=1
          
          cgwindow,'dustemcgwin_dataset', st, dataset='polfrac', /nodata, position=p_spsed, /addcmd, winid=winid_m, _extra=_extra  & cmdind_m+=1

      endif else begin ;polfrac exists

         if  ~iswinsed then begin
             cmdind_m = !dustemcgwin_ncmds.polfrac.pl
             cgwindow,'dustemcgwin_dataset', st, dustem_polfrac, dataset='polfrac', /refresh ,position=p_spsed, winid=winid_m,/replacecmd,cmdindex=cmdind_m, _extra=_extra
             
         endif else begin
         ;stop
             cgwindow,'dustemcgwin_dataset', st, dataset='polfrac', position=p_spsed, /addcmd, winid=winid_m, _extra=_extra & cmdind_m+=1
             cgwindow,'dustemcgwin_dataset', st, dustem_polfrac, dataset='polfrac', /refresh ,position=p_spsed, /addcmd, winid=winid_m, _extra=_extra & cmdind_m+=1
             !dustemcgwin_ncmds.polfrac.pl = cmdind_m

         endelse       
      endelse  

    endif

    
    end_m:

    
    ;cgset, winid_m
    
    ;cgcontrol, update=1
;     varrr=cgquery(dimensions=dim_m) ;be careful because the dim_m array can be multi-dimensional because of the presence of two windows.
;     cgcontrol, update=1
;     cgcontrol, resize=[dim_m(0),dim_m(1)]
;     
    ;cgcontrol, resize=1
;     cgcontrol,update=1
;     cgcontrol,update=1
        
;     cgcontrol, resize=[!D.X_SIZE,!D.Y_SIZE]
    
    cgcontrol, execute=1
    ;cgcontrol, update=0
    ;cgcontrol, update=1
    ;varr=cgquery(dimensions=dim_m,objectref=winobj_m)

   ;stop

         
endif            
;endif                     

;Putting everything required for the plotting of the legends (column density,model chi2 and rchi2) and the two windows for the parameters and the plugins respectively

    ;p_sed = [0.05,0.67,0.475,0.90]
;     xxpos = 0.03
;     yypos = 0.95
;     ltit  =  'Model: '
;     cgwindow,'xyouts',xxpos,/addcmd,windid=winid_m,yypos,ltit+!dustem_model,color=0,/normal,charsize=legend_charsize

;     xxpos =
;     yypos =
;     ltit = 'N_{H}:'+strmid(string(*!dustem_HCD,format='(1E10.2)'),2)+'(H/cm^2)'
;     ltit = textoidl(ltit)
;     xyouts,xxpos,yypos,ltit,color=0,/normal,charsize=legend_charsize
;     xxpos =
;     yypos =
;     xyouts,xxpos,yypos,_extra.title,color=0,/normal,charsize=legend_charsize

;stop



; ;#COMMENTED BITS OF CODES 
;  
; IF keyword_set(help) THEN BEGIN
;   doc_library,'dustem_plot_fit_sed'
;   goto,the_end
; ENDIF
; 
; IF keyword_set(ps) THEN BEGIN
;     set_plot, 'PS'
;     device, filename=ps, /color,set_character_size=[170,250], /encapsulated
; ENDIF ELSE BEGIN
; 
;   set_plot,'X'
;     IF keyword_set(win) then window,win;,xsize=600,ysize=800
; ENDELSE
; 
; fact = 1.e4*(*!dustem_HCD)/(4.*!pi)/(3.e8/1.e-6/st.sed.wav)*1.e20/1.e7
; ;use_col_data_filt=70
; ;use_col_sed_spec=170
; use_col_data_filt='blue'
; ;use_col_sed_spec='red'
; use_col_sed_spec='grey'
; IF not keyword_set(col_sed) THEN BEGIN
;   ;use_col_sed_filt=250     ;red
;   use_col_sed_filt='red'     ;red
; ENDIF ELSE BEGIN
;   use_col_sed_filt=col_sed
; ENDELSE
; IF not keyword_set(col_tot) THEN BEGIN
;   ;use_col_tot=200
;   use_col_tot='black'
; ENDIF ELSE BEGIN
;   use_col_tot=col_tot
; ENDELSE
; IF not keyword_set(line_tot) THEN BEGIN
;   use_line_tot=0
; ENDIF ELSE BEGIN
;   use_line_tot=line_tot
; ENDELSE
; 
; 
; spec = st.sed.em_tot * fact
; if keyword_set(fpol) then specpol = st.polsed.em_tot * fact
; ;ADDING PLUGIN(S) TO SPECTRUM----------------
; ;if n_tags(!dustem_data.sed) gt 1 then begin 
; scopes=tag_names((*!dustem_scope))
; IF scopes[0] NE 'NONE' THEN BEGIN
; ;IF ptr_valid(!dustem_plugin) THEN BEGIN
;   FOR i=0L,n_tags(*!dustem_scope)-1 DO BEGIN
;     IF total(strsplit((*(*!dustem_scope).(i)),'+',/extract) EQ 'ADD_SED') THEN spec+=(*(*!dustem_plugin).(i))[*,0]
;     if keyword_set(fpol) then begin
;         IF total(strsplit((*(*!dustem_scope).(i)),'+',/extract) EQ 'REPLACE_QSED') THEN specpol=sqrt(((*(*!dustem_plugin).(i))[*,1])^2+((*(*!dustem_plugin).(i))[*,2])^2)
;     endif
;   ENDFOR
;   FOR i=0L,n_tags(*!dustem_scope)-1 DO BEGIN
;     if keyword_set(fpol) then begin    
;         IF total(strsplit((*(*!dustem_scope).(i)),'+',/extract) EQ 'ADD_QSED') THEN specpol+=sqrt(((*(*!dustem_plugin).(i))[*,1])^2+((*(*!dustem_plugin).(i))[*,2])^2)
;     endif  
;   ENDFOR
; ENDIF
; ;endif
; ;------------------------------------------
; 
; ;stop
; 
; ;use_cols=[use_col_pah,use_col_vsg,use_col_bg,use_col_cont]
; ;use_lines=[use_line_pah,use_line_vsg,use_line_bg,use_line_cont]
; ;col_off=30
; ;Ngrains=(*!dustem_params).grain.Ngrains
; Ngrains=(*!dustem_params).Ngrains
; ;use_cols=long(findgen(Ngrains)/(Ngrains-1)*(255-col_off)+col_off)
; use_cols=dustem_grains_colors(Ngrains,/cgplot)
; use_lines=replicate(0,Ngrains)
; 
; norm = dustem_sed * 0. + 1
; 
; ;====== PLOT THE SED
; 
; IF keyword_set(title) THEN title = title ELSE title = 'Spectral Energy Distribution (Running)'
; 
; IF keyword_set(xr) THEN xr = xr ELSE xr = [1.00E+00,6.00E+04]
; 
; IF keyword_set(yr) THEN yr = yr ELSE yr = [1.00E-7,5.00E03]
; 
; IF keyword_set(xtit) THEN xtit = xtit ELSE xtit = textoidl('\lambda (\mum)')
; 
; IF keyword_set(ytit) THEN ytit = ytit ELSE ytit = textoidl('Brightness/N_H (MJy/sr/H)')
; 
; 
; ;deffo define a title variable here. The procedures are not communicating with each other. 
; ;pos=cgLayout()
; ;###############################
; if keyword_set(fpol) then begin
;     if !run_lin then begin
;     cgDisplay, 600, 500
;     cgplot,(*!dustem_data.sed).wav,(*!dustem_data.sed).values/norm,/nodata,xtit='',ytit=ytit,tit='',/ylog,/xlog,/ys,/xs,position=[0.12,0.25,0.96,0.76],xtickformat='(A1)',_extra=_extra,charsize=1.3,/noerase    
;     endif
; endif ELSE cgplot,(*!dustem_data.sed).wav,(*!dustem_data.sed).values/norm,/nodata,xtit='',ytit=ytit,tit=title,/ylog,/xlog,/ys,/xs,position=[0.12,0.35,0.96,0.90],xtickformat='(A1)',_extra=_extra,charsize=1.3
; ;###############################
; 
; 
; ;cgplot,(*!dustem_data.sed).wav,(*!dustem_data.sed).values/norm,/nodata,xtit='',ytit=textoidl('Brightness/N_H (MJy/sr/H)'),tit=title,ylog=1,/xlog,xr=xr,yr=yr,/ys,/xs,position=[0.12,0.35,0.96,0.90],xtickformat='(A1)'
; 
; 
; ;stop
; ;cgplot,st.polsed.wav,Q_sed*fact,xtit='',ytit=ytitstq,tit=titstq,ylog=ylog,/xlog,xr=xr,yr=yr,/ys,/xs,position=[0.17,0.35,0.95,0.95],xtickformat='(A1)'
; 
; ;this is where you will add the normalized sed
; 
; 
; ind_filt=where((*!dustem_data.sed).filt_names NE 'SPECTRUM',count_filt)
; ind_spec=where((*!dustem_data.sed).filt_names EQ 'SPECTRUM',count_spec)
; ;=== Plot the data
; ; following lines for fawlty compatibility
; defsysv,'!psym',exists=pexist
; if pexist eq 0 then defsysv,'!psym',0
; IF count_spec NE 0 THEN BEGIN
;   ;x&
;   xx=((*!dustem_data.sed).wav)[ind_spec]
;   yy=((*!dustem_data.sed).values)[ind_spec]/norm[ind_spec]
;   rms=3.*((*!dustem_data.sed).sigma)[ind_spec]/2./norm[ind_spec]
;   cgoplot,xx,yy,psym    ,syms=0.5,color=use_col_sed_spec
;   IF not keyword_set(no_spec_error) THEN BEGIN
;     cgerrplot,xx,yy-rms,yy+rms,color=use_col_sed_spec
;     ;err_bar,((*!dustem_data.sed).wav)(ind_spec),((*!dustem_data.sed).values)(ind_spec)/norm(ind_spec),yrms=3.*((*!dustem_data.sed).sigma)(ind_spec)/2./norm(ind_spec)
;   ENDIF
; ENDIF
; IF count_filt NE 0 THEN BEGIN
;   ;stop
;   xx=((*!dustem_data.sed).wav)[ind_filt]
;   yy=((*!dustem_data.sed).values)[ind_filt]/norm[ind_filt]
;   rms=3.*((*!dustem_data.sed).sigma)[ind_filt]/2./norm[ind_filt]
;   plotsym,0,/fill
;   cgoplot,xx,yy,psym=8,color='Dodger Blue';use_col_data_filt
;   ;err_bar,((*!dustem_data.sed).wav)(ind_filt),((*!dustem_data.sed).values)(ind_filt)/norm(ind_filt),yrms=3.*((*!dustem_data.sed).sigma)(ind_filt)/2./norm(ind_filt),color=use_col_data_filt
;   cgerrplot,xx,yy-rms,yy+rms,color='Dodger Blue';use_col_data_filt
; ENDIF
; ;=== Plot the computed SED
; IF count_filt NE 0 THEN BEGIN
;   plotsym,8
;   xx=((*!dustem_data.sed).wav)[ind_filt]
;   yy=sed[ind_filt]/norm[ind_filt]
;   cgoplot,xx,yy,color=use_col_sed_filt,psym=6,syms=2
; ENDIF
; IF count_spec NE 0 THEN BEGIN
;   plotsym,0
;   xx=((*!dustem_data.sed).wav)[ind_spec]
;   yy=sed[ind_spec]/norm[ind_spec]
;   cgoplot,xx,yy,color=use_col_sed_filt,psym=6,syms=2
; ENDIF
; 
; 
; IF !dustem_show_plot EQ 2 THEN BEGIN
; 	norm = spec
; ENDIF ELSE BEGIN
; 	norm = spec * 0. + 1
; ENDELSE
; use_cols[1]='Cornflower'
; FOR i=0L,Ngrains-1 DO BEGIN
;   cgoplot,st.sed.wav,st.sed.(i+1)*fact/norm,color=use_cols[i],linestyle=use_lines[i]
; ENDFOR
; 
; ;stop
; 
; ;PLOTTING OF THE PLUGIN(S)--------------- AUTOMATE THIS. QUITE FEASIBLE
; IF tag_exist(*!dustem_scope,'CONTINUUM') THEN BEGIN
;   cgoplot,st.sed.wav,(*(*!dustem_plugin).continuum)[*,0],color='Teal',linestyle=3
; ENDIF
; IF tag_exist(*!dustem_scope,'FREEFREE') THEN BEGIN
;   cgoplot,st.sed.wav,(*(*!dustem_plugin).freefree)[*,0],color='Dark Red',linestyle=3
; ENDIF
; IF tag_exist(*!dustem_scope,'SYNCHROTRON') THEN BEGIN
;   cgoplot,st.sed.wav,(*(*!dustem_plugin).synchrotron)[*,0],color='Crimson',linestyle=3
; ENDIF
; 
; IF tag_exist(*!dustem_scope,'MBBDY_ISRF') THEN BEGIN
;   cgoplot,st.sed.wav,(*(*!dustem_plugin).mbbdy_isrf)[*,0],color='Gold',linestyle=3
; ENDIF
; 
; IF tag_exist(*!dustem_scope,'MBBDY') THEN BEGIN
;   cgoplot,st.sed.wav,(*(*!dustem_plugin).mbbdy)[*,0],color='Cornflower',linestyle=3
; ENDIF
; 
; 
; cgoplot,st.sed.wav,spec/norm,color=use_col_tot,linestyle=use_line_tot
; if keyword_set(fpol) then cgoplot,st.polsed.wav,specpol,color='Teal',linestyle=4
; ;plot the normalized data as well. 
; ;----------------------------------------
; 
; ;==== print the legend
; frmt0='(A36)'
; frmt1='(1E10.2)'
; frmt2='(F7.2)'
; use_legend_xpos=0.50
; if keyword_set(fpol) then use_legend_ypos=0.70 ELSE use_legend_ypos=0.84
; use_legend_offset=0.03             ;This is the offset between lines of the legend in normalized units
; legend_charsize=0.86
; 
; k=0.
; iscond=0
; n_plgns = n_tags(*!dustem_scope)
; inn=n_plgns/2+1
; IF n_plgns mod 2 ne 0 THEN inn=n_plgns/2+2
; 
; IF keyword_set(legend_xpos) THEN use_legend_xpos=legend_xpos
; IF keyword_set(legend_ypos) THEN use_legend_ypos=legend_ypos
; IF keyword_set(legend_offset) THEN use_legend_offset=legend_offset
; 
; IF !d.name NE 'PS' THEN cleanplot
; 
; tg=0
; prv_str=''
; IF keyword_set(res) THEN BEGIN
;   Npar=n_elements(res)
;   ;print,'=============='
;   
;   FOR i=0L,Npar-1 DO BEGIN
;     parameter_description=(*(*!dustem_fit).param_descs)[i]
;     parameter_type=dustem_parameter_description2type(parameter_description,string_name=string_name)
;     str=string(string_name+' = ',format=frmt0)+string(res[i],format=frmt1)
;     IF keyword_set(errors) THEN BEGIN
;       str=str+textoidl(' \pm ')+string(errors(i),format=frmt1)
;     ENDIF
;    
;     xxpos=use_legend_xpos*0.07
;     yypos=use_legend_ypos*0.03
;     xyouts,xxpos,yypos,'Model: '+!dustem_model,color=0,/normal,charsize=legend_charsize
;    
;     IF STRUPCASE(strmid(strtrim(parameter_description,2),0,6)) eq 'DUSTEM' THEN BEGIN
;        
; ;     xxpos=use_legend_xpos*0.07
; ;     yypos=use_legend_ypos*0.03
; ;     xyouts,xxpos,yypos,'Model: '+!dustem_model,color=0,/normal,charsize=legend_charsize
;      
;     xxpos=use_legend_xpos*0.75
;     yypos=use_legend_ypos*1.03
;     xyouts,xxpos,yypos,'--Plugins--',color=0,/normal,charsize=legend_charsize
;     
;     ii = strsplit(string_name,'_',count=countx) & ii = ii(countx-1)-1 ; Locating the last underscore to automate the extraction of the plugin's keyword
;     
;     mm=where(tag_names(*!dustem_scope) eq strupcase(strmid(string_name,7,ii-7)),coun) ; Selecting a plugin through matching the string name of the plugin form the scope system variable with the one read from the parameter description vector
;  
;     ;tg+=1
;     ;if strmid(string_name,7,ii-7) eq prv_str then tg-=1
;     prmtg=(*(*!dustem_paramtag).(mm))
;     indtg=(strmid(string_name,ii+1)) & indtg=strmid(indtg,0,/reverse_offset)   
;     ;stop
;     indtg=fix(indtg)
;     prmtg=prmtg[indtg-1] 
;     
;     str=string(strmid(string_name,7,ii-7)+' ['+strmid(string_name,ii+1)+']: '+prmtg+' = ',format=frmt0)+string(res[i],format=frmt1)
;    
;     prv_str=strmid(string_name,7,ii-7)
;     
;     
;     
;      IF keyword_set(errors) THEN BEGIN
;        str=str+textoidl(' \pm ')+string(errors(i),format=frmt1)
;      ENDIF
;     
;     xxpos=use_legend_xpos*0.46
;     
;     IF n_plgns gt 3 THEN BEGIN ;adapt the display of the plugins if there are more than three (display two columns)
;         IF i eq inn+k THEN BEGIN
;            k+=inn     
;            ;iscond=1
;            inn+=1
;            xxpos=use_legend_xpos*0.06
;         ENDIF
;     ENDIF
;               
; ;     IF iscond THEN BEGIN
; ;     inn+=1
; ;     xxpos=use_legend_xpos*0.06
; ;     ENDIF
; 
;     yypos=use_legend_ypos-(i-k)*use_legend_offset
;     xyouts,xxpos,yypos,str,color=0,/normal,charsize=legend_charsize
;     endif else begin
;     IF STRUPCASE(strmid(strtrim(parameter_description,2),0,24)) eq '(*!DUSTEM_PARAMS).GRAINS' and STRUPCASE(strmid(strtrim(parameter_description,2),3,1,/reverse_offset)) EQ 'O' then begin
;      indpop=fix(STRUPCASE(strmid(strtrim(parameter_description,2),12,1,/reverse_offset)))
;      ;oo+=1
;      ;string_name=(((*!dustem_params).GRAINS).grain_type)[oo-1]
;      string_name=(((*!dustem_params).GRAINS).grain_type)[indpop]
;      ;stop
;     endif
;     k+=1
;     xxpos=use_legend_xpos*1.5
;     yypos=use_legend_ypos*1.03
;     xyouts,xxpos,yypos,'--Parameters--',color=0,/normal,charsize=legend_charsize
;     yypos=use_legend_ypos-(i)*use_legend_offset 
;     xxpos=use_legend_xpos*1.14
;     str=string(string_name+' = ',format=frmt0)+string(res[i],format=frmt1)
;     xyouts,xxpos,yypos,str,color=0,/normal,charsize=legend_charsize    
;     endelse
;   ENDFOR
;   ;stop
; ENDIF
; IF keyword_set(chi2) THEN BEGIN
;   xxpos=1.29*use_legend_xpos
;   yypos=1.13*0.84;use_legend_ypos
;   xyouts,xxpos,yypos,string('chi2=',format=frmt0)+string(chi2,format=frmt2),color=0,/normal,charsize=legend_charsize
; ENDIF
; IF keyword_set(rchi2) THEN BEGIN
;   xxpos=1.29*use_legend_xpos
;   yypos=1.13*0.84-use_legend_offset;use_legend_ypos-use_legend_offset
;   xyouts,xxpos,yypos,string('red. chi2=',format=frmt0)+string(rchi2,format=frmt2),color=0,/normal,charsize=legend_charsize
; ENDIF
; 
; xtit=textoidl('\lambda (\mum)')
; ;cgplot,(*!dustem_data.sed).wav,(*!dustem_data.sed).values/sed,/nodata,xtit=xtit,ytit='Normalized',tit='',/xlog,xr=xr,/ys,/xs,yr=[0,2],ylog=0,position=[0.12,0.14,0.96,0.35],/noerase,yticks=2,ymino=2,xticklen=0.1
; ;stop
; 
; IF keyword_set(_extra) THEN BEGIN
;   extra_kept={XR:[0.,0.]}
;   extra_tags=tag_names(_extra)
;   ind=where(extra_tags EQ 'XR',count)
;   IF count NE 0 THEN extra_kept.XR=_extra.(ind[0]) ;ELSE extra_kept=0
; ENDIF
; 
; ;stop
; ;,position=[0.12,0.14,0.96,0.35] old position before your polfrac display modification
; if keyword_set(fpol) then begin
; cgplot,(*!dustem_data.sed).wav,(*!dustem_data.sed).values/sed,_extra=extra_kept,/nodata,xtit=xtit,ytit='Normalized',tit='',/xlog,/ys,/xs,yr=[0,2],ylog=0,position=[0.12,0.1,0.96,0.25],/noerase,yticks=2,ymino=2,xticklen=0.1,ytickformat='(F6.2)',charsize=1.3
; endif else cgplot,(*!dustem_data.sed).wav,(*!dustem_data.sed).values/sed,_extra=extra_kept,/nodata,xtit=xtit,ytit='Normalized',tit='',/xlog,/ys,/xs,yr=[0,2],ylog=0,position=[0.12,0.14,0.96,0.35],/noerase,yticks=2,ymino=2,xticklen=0.1,ytickformat='(F6.2)',charsize=1.3
; ;plot the normalized data as well. 
; IF count_spec NE 0 THEN BEGIN
;   xx=((*!dustem_data.sed).wav)[ind_spec]
;   yy=((*!dustem_data.sed).values/sed)[ind_spec]
;   cgoplot,xx,yy,psym=16,symsize=1,thick=2,color=use_col_sed_spec
;   trois_sigma=(3.*((*!dustem_data.sed).sigma)/2./sed)[ind_spec]
;   cgerrplot,xx,yy-trois_sigma,yy+trois_sigma,color=use_col_sed_spec
; ENDIF
; IF count_filt NE 0 THEN BEGIN
;   xx=((*!dustem_data.sed).wav)[ind_filt]
;   yy=((*!dustem_data.sed).values/sed)[ind_filt]
;   cgoplot,xx,yy,psym=16,symsize=1,thick=2,color='Dodger Blue'
;   trois_sigma=(3.*((*!dustem_data.sed).sigma)/2./sed)[ind_filt]
;   cgerrplot,xx,yy-trois_sigma,yy+trois_sigma,color='Dodger Blue'
; ENDIF
; 
; ;stop
; ;cgoplot,(*!dustem_data.sed).wav,(*!dustem_data.sed).values/sed,psym=16,symsize=1,thick=2,color='Dodger Blue'
; cgoplot,10^!x.crange,replicate(1.,2),color='black',linestyle=0
; ;cgoplot,st.sed.wav,spec/spec,color='black'
; ;cgerrplot,((*!dustem_data.sed).wav),((*!dustem_data.sed).values)/sed-3.*((*!dustem_data.sed).sigma)/2./sed,((*!dustem_data.sed).values)/sed+3.*((*!dustem_data.sed).sigma)/2./sed,color='Dodger Blue'
; 
; 
; if keyword_set(fpol) then begin
;     plotsym,0,/fill
;     cgplot, (*!dustem_data.polfrac).wav,(*!dustem_data.polfrac).values*100,/nodata,xtit='',tit=title,ytit='',/xlog,/ylog,/ys,/xs,position=[0.12,0.76,0.96,0.91],charsize=1.3,yr=[1.0E-1,30.0],/noerase,xticklen=0.1,xtickformat='(A1)',_extra=extra_kept;,xr=_extra.xr
;     xxpos=use_legend_xpos*0.35
;     yypos=use_legend_ypos*1.25
;     xyouts,xxpos,yypos,'Polarization fraction (%)',color=cgcolor('purple'),charsize=legend_charsize,/normal
;     yypos=use_legend_ypos*1.20
;     stringg='Polarization SED '+'('+textoidl('P_{\nu}')+')'
;     xyouts,xxpos,yypos,stringg,color=cgcolor('teal'),charsize=legend_charsize,/normal
;     pilotfx=fpol(0);((*!dustem_data.polfrac).values)(0);fpol(0);
;     cgoplot, (*!dustem_data.polfrac).wav,(*!dustem_data.polfrac).values*100,charsize=1.3,psym=8,syms=1,thick=2,color='Dodger Blue'   
;     cgoplot, st.polsed.wav,(specpol/spec)*100/pilotfx*((*!dustem_data.polfrac).values)(0),color='purple'
;     cgoplot, (*!dustem_data.polfrac).wav,fpol*100/pilotfx*((*!dustem_data.polfrac).values)(0),color='Red',psym=6,syms=1
;     ;fpol=abs(fpol)
;     ;delp=(*!dustem_data.polfrac).values*100-fpol*100/pilotfx*((*!dustem_data.polfrac).values)(0)
;     ;cgoplot, ((*!dustem_data.polfrac).wav),((*!dustem_data.polfrac).values*100+delp),charsize=1.3,color='black',linestyle=2
;     ;stop
; endif
; 
; IF keyword_set(ps) THEN BEGIN
;   device,/close
;   set_plot,'X'
; ENDIF
; 
; ;stop
; 
; the_end:

END