PRO dustem_activate_plugins,p_min,help=help,st

;+
; NAME:
;    dustem_activate_plugins
; PURPOSE:
;    activates the plugins present in the parameter description vector (pd)
; CATEGORY:

;    DUSTEM Wrapper, Distributed, Mid-Level, Plugins

; CALLING SEQUENCE:
;    dustem_activate_plugins,pd 
; INPUTS:

;    parameter desription vector 

; OPTIONAL INPUT PARAMETERS:
;    key  = input parameter number
;    val  = input parameter value
; OUTPUTS:
;    None
; OPTIONAL OUTPUT PARAMETERS:
;    None
; ACCEPTED KEY-WORDS:
;    help                  = if set, print this help
; COMMON BLOCKS:
;    None
; SIDE EFFECTS:
;    None
; RESTRICTIONS:

;    The DustEM fortran code must be installed
;    The DustEMWrap idl code must be installed
; PROCEDURES AND SUBROUTINES USED:
;    *** COMMENT AH --> is this really NONE? ****
;
; EXAMPLES
;    dustem_activate_plugins, pd
;
; MODIFICATION HISTORY:
;    Written by IC Apr-2022
;    Evolution details on the DustEMWrap gitlab.
;    See http://dustemwrap.irap.omp.eu/ for FAQ and help.  

;-


IF keyword_set(help) THEN BEGIN
  doc_library,'dustem_activate_plugins'
  goto,the_end
  output=0.
ENDIF

p_dim = p_min * (*(*!dustem_fit).param_init_values)

st=dustem_run(p_dim)    

!dustem_current = ptr_new(st)

if isa((*!dustem_fit).fixed_param_descs) then begin

    ;concatenating the parameter vectors
    param_descs =  [(*(*!dustem_fit).param_descs),(*(*!dustem_fit).fixed_param_descs)]  

    param_values = [p_dim,(*(*!dustem_fit).fixed_param_init_values)]
    param_values = param_values(sort(param_descs)) ;should we put it back to the way it was?

    param_descs = param_descs(sort(param_descs))

        ;Taking care of the param_func vector
    dustem_set_func_ind, param_descs, param_values ; this sets  (*(*!dustem_fit).param_func)
    param_func = (*(*!dustem_fit).param_func)
    dustem_set_func_ind, (*(*!dustem_fit).param_descs), p_dim ;setting the pointers back to their original valyes 
    
endif else begin
    
    param_descs = (*(*!dustem_fit).param_descs)
    param_values = p_dim
    param_func = (*(*!dustem_fit).param_func)

endelse


f=1 ; Initializing the index that is associated to each plugin 
FOR i=0L,n_elements(param_descs)-1 DO BEGIN

   parameter_type=dustem_parameter_description2type(param_descs[i],string_name=string_name) ; Looping over the parameter description vector (here saved in a system variable) to sort out its different elements with repect to their types

   
   IF parameter_type EQ 'PLUGIN' THEN BEGIN   ; Selecting the plugins

        ftn = strmid(param_descs(i),0) ; String containing the name of the plugin and the keyword used (ie: dustem_create_continuum_2)    

        ii = strsplit(ftn,'_',count=countx) & ii = ii(countx-1)-1 ; Locating the last underscore to automate the extraction of the plugin's keyword
        ftn = strmid(ftn,0,ii) ; String containing the name of the plugin without the associated keyword

        k=where(strmid(tag_names(*!dustem_plugin),0,8) eq strmid(strupcase(strmid(ftn,14)),0,8),counte) ; Selecting a plugin through matching the string name of the plugin from the scope system variable with the one read from the parameter description vector
        
        tmp = where(param_func eq f, count) ; Array of indices helping with the sorting out of the different plugins (as a plugin can be called several times with different keywords so as to fit several quantities) 
        PDO_tmp = param_descs(tmp) ; Array containing the different calls of each plugin at a time

        p_dim_tmp = param_values(tmp) ; Array containing the values of the fitted parameters

        vari = strmid(PDO_tmp(0),ii+1) ; Test variable to be used to alter the initialization of the index and value arrays below as a keyword can be a scalar or a string
        
        ; Initialization of the index and value arrays. These arrays will be used (below) when calling the plugins (with the default key=key and val=val keywords)
        
        if strlen(strtrim(string(vari),2)) gt 1 then begin
            index = strarr(count) & value = fltarr(count)  
        endif else  begin
            index = fltarr(count) & value = fltarr(count)
        endelse
        
        ; Filling the index and value arrays for one plugin at a time  
        FOR l=0, count-1 DO BEGIN
           index[l] = strmid(PDO_tmp[l],ii+1) 
           value[l] = p_dim_tmp[l]                      
        ENDFOR    
        
        ;==============Assigning data to the plugin data structure==============
        
        ;Dry run of the plugins to obtain their scopes and run them accordingly (an advanced user might want to add their own lines here)
        str='toto='+ftn+'(scope=scope)' & str=str(0)        
        toto=execute(str)            
        ((*!dustem_plugin).(k).scope)=ptr_new(scope)
        
        
        ;we first need to run the isrf plugin
        ;should we adjust the list of plugins with given priority?
        
        
        if (*(*!dustem_plugin).(k).scope) NE 'STELLAR_POPULATION' and strmid((*(*!dustem_plugin).(k).scope),0,7) NE 'REPLACE'  THEN BEGIN
            
            str='toto='+ftn+'(paramtag=paramtag)' & str=str(0)        
            toto=execute(str)            
            ((*!dustem_plugin).(k).paramtag)=ptr_new(paramtag)
            
            str='((*!dustem_plugin).('+strtrim(k,2)+').spec)=ptr_new('+ftn+'(key=index,val=value)'+')' & str=str(0)
            
            toto=execute(str) & IF !dustem_verbose NE 0 THEN message,strupcase(strmid(ftn,7)),/info
        
        ENDIF
            
        f=f+1 & i=i+count-1 ; Incrementing the parameter and same-type plugin indices  
  ENDIF
ENDFOR


f=1 ; Initializing the index that is associated to each plugin 
FOR i=0L,n_elements(param_descs)-1 DO BEGIN
   
   parameter_type=dustem_parameter_description2type(param_descs[i],string_name=string_name) ; Looping over the parameter description vector (here saved in a system variable) to sort out its different elements with repect to their types
   
   IF parameter_type EQ 'PLUGIN' THEN BEGIN   ; Selecting the plugins
        
        ftn = strmid(param_descs(i),0) ; String containing the name of the plugin and the keyword used (ie: dustem_create_continuum_2)    
        ii = strsplit(ftn,'_',count=countx) & ii = ii(countx-1)-1 ; Locating the last underscore to automate the extraction of the plugin's keyword
        ftn = strmid(ftn,0,ii) ; String containing the name of the plugin without the associated keyword
        
        k=where(strmid(tag_names(*!dustem_plugin),0,8) eq strmid(strupcase(strmid(ftn,14)),0,8),counte) ; Selecting a plugin through matching the string name of the plugin from the scope system variable with the one read from the parameter description vector
        
        tmp = where(param_func eq f, count) ; Array of indices helping with the sorting out of the different plugins (as a plugin can be called several times with different keywords so as to fit several quantities) 
        PDO_tmp = param_descs(tmp) ; Array containing the different calls of each plugin at a time
         
        p_dim_tmp = param_values(tmp) ; Array containing the values of the fitted parameters

        vari = strmid(PDO_tmp(0),ii+1) ; Test variable to be used to alter the initialization of the index and value arrays below as a keyword can be a scalar or a string

        ; Initialization of the index and value arrays. These arrays will be used (below) when calling the plugins (with the default key=key and val=val keywords)
        
        if strlen(strtrim(string(vari),2)) gt 1 then begin
            index = strarr(count) & value = fltarr(count)  
        endif else  begin
            index = fltarr(count) & value = fltarr(count)
        endelse
        
        ; Filling the index and value arrays for one plugin at a time  

        FOR l=0, count-1 DO BEGIN
           index[l] = strmid(PDO_tmp[l],ii+1) 
           value[l] = p_dim_tmp[l]                      

        ENDFOR    

        ;==============Assigning data to the plugin data structure==============
        

        ;Dry run of the plugins to obtain their scopes and run them accordingly (an advanced user might want to add their own lines here)

        str='toto='+ftn+'(scope=scope)' & str=str(0)        
        toto=execute(str)            
        ((*!dustem_plugin).(k).scope)=ptr_new(scope)
        

        
        ;we first need to run the isrf plugin
        ;should we adjust the list of plugins with given priority?
        
        
        if (*(*!dustem_plugin).(k).scope) EQ 'STELLAR_POPULATION' THEN BEGIN
            
            str='toto='+ftn+'(paramtag=paramtag)' & str=str(0)        
            toto=execute(str)            
            ((*!dustem_plugin).(k).paramtag)=ptr_new(paramtag)
            
            str='((*!dustem_plugin).('+strtrim(k,2)+').spec)=ptr_new('+ftn+'(key=index,val=value)'+')' & str=str(0)
            
            toto=execute(str) & IF !dustem_verbose NE 0 THEN message,strupcase(strmid(ftn,7)),/info
            st = dustem_run(p_dim) ;run with changed isrf
            !dustem_current = ptr_new(st)
        ENDIF
            
        f=f+1 & i=i+count-1 ; Incrementing the parameter and same-type plugin indices  
  ENDIF
ENDFOR




f=1 ; Initializing the index that is associated to each plugin 
FOR i=0L,n_elements(param_descs)-1 DO BEGIN
   
   parameter_type=dustem_parameter_description2type(param_descs[i],string_name=string_name) ; Looping over the parameter description vector (here saved in a system variable) to sort out its different elements with repect to their types
   
   IF parameter_type EQ 'PLUGIN' THEN BEGIN   ; Selecting the plugins
        
        ftn = strmid(param_descs(i),0) ; String containing the name of the plugin and the keyword used (ie: dustem_create_continuum_2)    
        ii = strsplit(ftn,'_',count=countx) & ii = ii(countx-1)-1 ; Locating the last underscore to automate the extraction of the plugin's keyword
        ftn = strmid(ftn,0,ii) ; String containing the name of the plugin without the associated keyword
        
        k=where(strmid(tag_names(*!dustem_plugin),0,8) eq strmid(strupcase(strmid(ftn,14)),0,8),counte) ; Selecting a plugin through matching the string name of the plugin from the scope system variable with the one read from the parameter description vector
        
        tmp = where(param_func eq f, count) ; Array of indices helping with the sorting out of the different plugins (as a plugin can be called several times with different keywords so as to fit several quantities) 
        PDO_tmp = param_descs(tmp) ; Array containing the different calls of each plugin at a time
         
        p_dim_tmp = param_values(tmp) ; Array containing the values of the fitted parameters
        
        vari = strmid(PDO_tmp(0),ii+1) ; Test variable to be used to alter the initialization of the index and value arrays below as a keyword can be a scalar or a string
        
        ; Initialization of the index and value arrays. These arrays will be used (below) when calling the plugins (with the default key=key and val=val keywords)
        
        if strlen(strtrim(string(vari),2)) gt 1 then begin
            index = strarr(count) & value = fltarr(count)  
        endif else  begin
            index = fltarr(count) & value = fltarr(count)
        endelse
        
        ; Filling the index and value arrays for one plugin at a time  
        FOR l=0, count-1 DO BEGIN
           index[l] = strmid(PDO_tmp[l],ii+1) 
           value[l] = p_dim_tmp[l]                      
        ENDFOR    
        
        ;==============Assigning data to the plugin data structure==============
        
        ;Dry run of the plugins to obtain their scopes and run them accordingly (an advanced user might want to add their own lines here)
        str='toto='+ftn+'(scope=scope)' & str=str(0)        

        toto=execute(str)            

        ((*!dustem_plugin).(k).scope)=ptr_new(scope)
        

        ;we first need to run the isrf plugin
        ;should we adjust the list of plugins with given priority?

        if strmid((*(*!dustem_plugin).(k).scope),0,7) EQ 'REPLACE' THEN BEGIN
            
            str='toto='+ftn+'(paramtag=paramtag)' & str=str(0)        
            toto=execute(str)            
            ((*!dustem_plugin).(k).paramtag)=ptr_new(paramtag)
            
            str='((*!dustem_plugin).('+strtrim(k,2)+').spec)=ptr_new('+ftn+'(key=index,val=value)'+')' & str=str(0)
            
            toto=execute(str) & IF !dustem_verbose NE 0 THEN message,strupcase(strmid(ftn,7)),/info
            st = dustem_run(p_dim) ;run with changed isrf
            !dustem_current = ptr_new(st)
        ENDIF
            

        f=f+1 & i=i+count-1 ; Incrementing the parameter and same-type plugin indices  

  ENDIF
ENDFOR

the_end:

END