PRO dustem_plot_polar,st,p_dim,ps=ps,_Extra=extra,help=help,UV=UV,SED=SED,Pfrac=Pfrac,print_ratio=print_ratio,win=win,xr=xr,yr=yr,donotclose=donotclose,aligned=aligned,noerrbars=noerrbars,multi=multi,almabands=almabands,nsmooth=nsmooth

;+
; NAME:
;     dustem_plot_polar
; PURPOSE:
;    Plots a Dustem polarization curve
; CATEGORY:
;    Dustem
; CALLING SEQUENCE:
;    dustem_plot_curve,st,,/help][,_extra=]
; INPUTS:
;    st        = Dustem model output structure
; OPTIONAL INPUT PARAMETERS:
;    _extra    = extra parameters for the plot routine
; OUTPUTS:
;    None
; OPTIONAL OUTPUT PARAMETERS:
;    None
; ACCEPTED KEY-WORDS:
;    help      = If set, print this help
; COMMON BLOCKS:
;    None
; SIDE EFFECTS:
;    model is plotted
; RESTRICTIONS:
;    The dustem idl wrapper must be installed
; PROCEDURE:
;    None
; EXAMPLES
;    dustem_init,/wrap
;    dir_in=getenv('DUSTEM_SOFT_DIR')+'/src/dustem3.8_web/'
;    dir=getenv('DUSTEM_RES')
;    st=dustem_read_all_res(dir_in)
;    loadct,13
;    dustem_plot_curve,st,yr=[1.e-6,1.e0],/ysty,xr=[1.,400],/xsty
; MODIFICATION HISTORY:
;
;    Adapted by VG from dustem_plot_ext.pro
;
;    Written by J.-Ph. Bernard
;    see evolution details on the dustem cvs maintained at CESR
;    Contact J.-Ph. Bernard (Jean-Philippe.Bernard@cesr.fr) in case of problems.
;-

IF keyword_set(help) THEN BEGIN
  doc_library,'dustem_plot_polar'
  goto,the_end
ENDIF

if not keyword_set(nsmooth) then nsmooth = 1

nsmooth = 4
almabands = 1.

if not keyword_set(multi) then multi=0

if multi ne 2 then begin
	if keyword_set(ps) then begin
        	set_plot, 'PS'
        	device, filename=ps, /color, /encapsulated
	endif else begin
        	set_plot,'X'

        	if keyword_set(win) then begin
        	if ptr_valid(!dustem_data.polsed) then window,win,title='DUSTEM WRAP (POLSED)' else window,win,title='DUSTEM WRAP (POLEXT)' 
            endif

	endelse
endif

;stop

use_col_sed_filt = 70
use_col_data_filt = 250

Ngrains=n_tags(st.sed)-2

colors=dustem_grains_colors(Ngrains,ls,ps=ps)

if ptr_valid(!dustem_data.polsed) then xtit=textoidl('\lambda (\mum)') else xtit=textoidl('\lambda^{-1} (\mum^{-1})')

;ext_tot=st.ext.abs_grain(0)*0.
;polext_tot=st.polext.abs_grain(0)*0.
;FOR i=0L,Ngrains-1 DO BEGIN
  ;polext_tot = polext_tot + (st.polext.abs_grain(i) + st.polext.sca_grain(i))
  ;ext_tot    = ext_tot    + (st.ext.abs_grain(i)    + st.ext.sca_grain(i))
;ENDFOR

; Are observational data defined ?
defsysv,'!dustem_data',exists=data_exists

IF ptr_valid(!dustem_data.polext) THEN BEGIN

   interpolext = interpol(st.polext.ext_tot,st.polext.wav,(*!dustem_data.polext).wav)

   IF keyword_set(print_ratio) THEN BEGIN

		; Correction de couleur
		cc = 1.11

	    Bband = 0.44
	    Vband = 0.55

		Rband = 0.66
		Iband = 0.8
		Jband = 1.25
		Hband = 1.6
		Kband = 2.2
		; pV and tauV are In units of 1e-21 cm2/H 

	    pV = interpol(st.polext.ext_tot,st.polext.wav,Vband)
	    pR = interpol(st.polext.ext_tot,st.polext.wav,Rband)
	    pI = interpol(st.polext.ext_tot,st.polext.wav,Iband)
	    pJ = interpol(st.polext.ext_tot,st.polext.wav,Jband)
	    pH = interpol(st.polext.ext_tot,st.polext.wav,Hband)
	    pK = interpol(st.polext.ext_tot,st.polext.wav,Kband)

		j=where(st.polext.wav gt 5 and st.polext.wav lt 20)
		pSil=max(st.polext(j).ext_tot,jmax)
		Silband = st.polext(j(jmax)).wav
		j=where(st.polext.wav gt 0.4 and st.polext.wav lt 0.75)
		pmeanoptical = mean(st.polext(j).ext_tot)

		pV_data = interpol((*!dustem_data.polext).values,(*!dustem_data.polext).wav,Vband)
	        tauV = interpol(st.ext.ext_tot,st.ext.wav,Vband)
		tauV_data = interpol((*!dustem_data.ext).values,(*!dustem_data.ext).wav,Vband)
	        tauB = interpol(st.ext.ext_tot,st.ext.wav,Bband)
		tauB_data = interpol((*!dustem_data.ext).values,(*!dustem_data.ext).wav,Bband)
	    	print


		; I353 and P353 are in fact nu_Pnu, in unit of erg/s/H, not erg/s/sr/H
	                                ; 1 W/m2/sr/1d20H = 1e-17 erg/s/sr/H

	ENDIF

	IF ptr_valid(!dustem_data.polsed) THEN BEGIN

	    dustem_polsed = dustem_compute_polsed(p_dim,st);dustem_compute_polsed(p_dim,st.polsed,cont=cont)

		x=min(((*!dustem_data.polsed).wav-850)^2,jmin)
		P353 = dustem_polsed(jmin)
		P353_data = (*!dustem_data.polsed).values(jmin)

	    dustem_sed = dustem_compute_sed(p_dim,st);dustem_compute_sed(p_dim,st,cont=cont)

		x=min(((*!dustem_data.sed).wav-850)^2,jmin)
		I353 = dustem_sed(jmin)
		I353_data = (*!dustem_data.sed).values(jmin)

		; Data is Inu, not nInu, in MJy/sr/1e20
		; Convert data, which is nu_Inu SED in MJy/sr/1d20H into nu_Inu SED model in erg/s/H 
		fact = (4*!pi) * 1e-17 / 1e20 * 353e9

		print
		print,"Observational  constraint"
		print,"-------------------------"
		print,"I353/NH data        ",I353_data," MJy/sr for NH=1e20"
		print,"P353/NH data        ",P353_data," MJy/sr for NH=1e20"
	        print,"P353/I353 data      ",P353_data/I353_data*100," %"
	        print
	        print,"Model results"
		print,"-------------"
	        print,"I353/NH model       ",I353," MJy/sr for NH=1e20"
		print,"P353/NH model       ",P353," MJy/sr for NH=1e20"
		print,"P353/I353 model     ",P353/I353*100," %"

	    IF keyword_set(print_ratio) THEN BEGIN
		    print
			print,"Observational  constraint"
			print,"-------------------------"

	        print,"tau_V data      ",tauV_data
	        print,"(p/tau)_V data      ",pV_data/tauV_data*100," %"
	        print,"p_V/A_V data        ",pV_data/(tauV_data*1.086)*100," %"
			print,"with p_V data       ",pV_data," %"
	        print,"Rs/v data           ",(P353_data/I353_data)/(pv_data/tauv_data)
	        print,"RP/p data           ",(P353_data/1e20) / (pv_data*1e-21)," MJy/sr"
	        print,"I353/Av data        ",(I353_data/1e20) / (1.086*tauv_data*1e-21)," MJy/sr"
			print
	        print,"(p/tau)_V model     ",pV/tauV*100," %"
	        print,"p_V/A_V model       ",pV/(tauV*1.086)*100," %"
	        print,"p_V/E(B-V) model       ",pV/((tauB-tauV)*1.086)*100," %"
			print,"with p_V model      ",pV," %"
	        print,"Rs/v model          ",P353/I353/(pV/tauV)
	        print,"Rs/EBV model          ",P353/I353/(pV/(tauB-tauV))
	        print,"RP/p model          ",(P353/1e20) / (pv*1e-21)," MJy/sr"
	        print,"- R band = 0.66 um  ",(P353/1e20) / (pR*1e-21)," MJy/sr"
	        print,"- I band = 0.8 um   ",(P353/1e20) / (pI*1e-21)," MJy/sr"
	        print,"- J band = 1.25 um  ",(P353/1e20) / (pJ*1e-21)," MJy/sr"
	        print,"- H band = 1.6 um   ",(P353/1e20) / (pH*1e-21)," MJy/sr"
	        print,"- K band = 2.2 um   ",(P353/1e20) / (pK*1e-21)," MJy/sr"
	        print,"- "+string(Silband,format='(F5.2)')+" um band       ",(P353/1e20) / (pSil*1e-21)," MJy/sr"
	        print,"- mean optical      ",(P353/1e20) / (pmeanoptical*1e-21)," MJy/sr"
			print,"I353/Av model       ",(I353/1e20) / (1.086*tauv*1e-21)," MJy/sr"
			print
			;print,"Mixt results"
			;print,"-------------"
		        ;print,"(pV_model/tauV_data) 	",pV/tauV_data*100," %"
			;print,"I353_model/AV_data	",(I353/1e20) / (1.086*tauv_data*1e-21)," MJy/sr"
		        ;print,"P353model/Idata	        ",P353/I353_data*100," %"
		        ;print,"Rs/v P353model/I353data/(pVmodel/tauVdata)	",P353/I353_data/(pV/tauV_data)
		        ;print,"RP/p P353model/pVdata	",(P353/1e20)/(pV_data*1e-21)," MJy/sr"
		        ;print
     	ENDIF

    ENDIF    

	IF keyword_set(UV) THEN BEGIN

		if not keyword_set(ps) then tit='Polarization Cross-section'

		ytit=textoidl('\sigma_{pol}/N_H (cm^2/H)')  
		if ptr_valid(!dustem_data.polext) then begin

			if !dustem_show_plot EQ 2 or multi eq 2 then begin
				;normpol = polext_tot 
				normpol = st.polext.ext_tot 

				dustem_polext = interpol(st.polext.ext_tot,st.polext.wav,(*!dustem_data.polext).wav)

				yr=[0.,2.]
				ylog = 0
			endif else begin

				dustem_polext = (*!dustem_data.polext).wav * 0. + 1.d20
				normpol = st.polext.ext_tot * 0. + 1.d20

				ylog = 1
			endelse

		    if multi eq 0 then cgplot,st.polext.wav,st.polext.ext_tot/normpol,/nodata,xtit=xtit,ytit=ytit,tit=tit,xr=xr,yr=yr,ylog=ylog,xlog=1
			if multi eq 1 then cgplot,st.polext.wav,st.polext.ext_tot/normpol,/nodata,_Extra=extra,xtit='',ytit=ytit,tit=tit,xr=xr,yr=yr,ylog=ylog,position=[0.17,0.35,0.93,0.93],xtickformat='(A1)' ,xlog=1
		    if multi eq 2 then cgplot,st.polext.wav,st.polext.ext_tot/normpol,/nodata,_Extra=extra,xtit=xtit,ytit='Normalized',tit='',xr=xr,yr=[0,2],ylog=ylog,position=[0.17,0.14,0.93,0.35],/noerase,yticks=3,ymino=5,xticklen=0.1,xlog=1
    		
    		

			FOR i=0L,Ngrains-1 DO BEGIN

				if aligned(i) then cgoplot,1/st.polext.wav,(st.polext.abs_grain(i)+st.polext.sca_grain(i))/normpol,color=colors(i+1),psym=psym,line=ls(i+1)

			ENDFOR

			if total(aligned gt 0) then cgoplot,1/st.polext.wav,st.polext.ext_tot/normpol,psym=psym
         

			if data_exists then BEGIN
				if ptr_valid(!dustem_data.polext) then begin
			        plotsym,0,/FILL

			 		cgoplot,1/(*!dustem_data.polext).wav,(*!dustem_data.polext).values/dustem_polext,psym=16,color='Olive Drab'
			 		if multi ne 2 then cgoplot,1/(*!dustem_data.polext).wav,interpolext/dustem_polext,psym=6,syms=2,color='red'
    			    if not keyword_set(noerrbars) then err_bar,(*!dustem_data.polext).wav,(*!dustem_data.polext).values/dustem_polext,yrms=(*!dustem_data.polext).sigma/dustem_polext,col=cgColor('Olive Drab')

				endif
			ENDIF
		ENDIF
	ENDIF

        if multi eq 0 then begin
		if not keyword_set(ps) then tit='Polarization fraction in extinction'
		ytit='Polarization fraction'
		cgplot,st.polext.wav,st.polext.ext_tot/st.ext.ext_tot,/nodata,_Extra=extra,xtit=xtit,ytit=ytit,tit=tit,xr=xr,yr=yr
		FOR i=0L,Ngrains-1 DO BEGIN
 	  		cgoplot,st.polext.wav,smooth((st.polext.abs_grain(i)+st.polext.sca_grain(i))/(st.ext.abs_grain(i)+st.ext.sca_grain(i)),nsmooth),color=colors(i+1),psym=psym,line=ls(i+1)
		ENDFOR
		if total(aligned gt 0) then cgoplot,st.polext.wav,st.polext.ext_tot/st.ext.ext_tot,psym=psym
		cgoplot,st.polsed.wav,st.polsed.(Ngrains+1)/st.sed.(Ngrains+1),psym=psym,linestyle=2

 	    if data_exists and ptr_valid(!dustem_data.polext) and ptr_valid(!dustem_data.ext) then begin
		    values_ext_for_polext = interpol((*!dustem_data.ext).values,(*!dustem_data.ext).wav,(*!dustem_data.polext).wav)
		    sigma_ext_for_polext  = interpol((*!dustem_data.ext).sigma ,(*!dustem_data.ext).wav,(*!dustem_data.polext).wav)
 			if not keyword_set(noerrbars) then err_bar,(*!dustem_data.polext).wav,(*!dustem_data.polext).values/values_ext_for_polext, $
			 	   yrms=1./values_ext_for_polext * (*!dustem_data.polext).sigma + (*!dustem_data.polext).values/values_ext_for_polext^2 * sigma_ext_for_polext
 	    endif
 	    endif
ENDIF

IF  ptr_valid(!dustem_data.polsed) THEN BEGIN

    if not keyword_set(ps) then tit='Polarization Intensity';' in emission'
    ytit='Polarization Intensity' ;is this line used? 

	ytit=textoidl('\nuP_\nu/N_H (W/m^2/sr/H)') 

	; Convert from erg/s/H into W/m2/sr/H
	fact=1./(4.*!pi)*1.e17/1d20

    ;dustem_polsed = dustem_compute_polsed(p_dim,st.polsed,cont=cont)*fact

	if not keyword_set(xr) then xr=[5e2,5e3]

	if !dustem_show_plot EQ 2 or multi eq 2 then begin  ;this is when plotting relative to SED value

		normpol = st.polsed.(Ngrains+1)*fact
		yr=[0.,2.5]
		ylog = 0
	endif else begin
		normpol = st.polsed.(Ngrains+1)*0. + 1.

        dustem_polsed = ((*!dustem_data.polsed).values)*0. + 1

		ylog=1
		if not keyword_set(yr) then yr=[1e-34,1e-30]
	endelse

    if multi eq 0 then cgplot,st.polsed.wav,/nodata,st.polsed.(Ngrains+1)*fact/normpol,xtit=xtit,ytit=ytit,tit=tit,ylog=ylog,/xlog,xr=xr,yr=yr,/ys,/xs
    if multi eq 1 then cgplot,st.polsed.wav,/nodata,st.polsed.(Ngrains+1)*fact/normpol,xtit='',ytit=ytit,tit=tit,ylog=ylog,/xlog,xr=xr,yr=yr,/ys,/xs,position=[0.17,0.35,0.93,0.93],xtickformat='(A1)' 
    if multi eq 2 then cgplot,st.polsed.wav,/nodata,st.polsed.(Ngrains+1)*fact/normpol,xtit=xtit,ytit='Normalized',tit='',/xlog,xr=xr,/ys,/xs,yr=[0,2],ylog=0,position=[0.17,0.14,0.93,0.35],/noerase,yticks=2,ymino=5,xticklen=0.1
    
        

    for i = 0, Ngrains-1 do begin

		if aligned(i) then cgoplot,st.polsed.wav,st.polsed.(i+1)*fact/normpol,color=colors(i+1),psym=psym,line=ls(i+1) ;investigate this line of the plotting of the different components in polarization

	endfor

    
    if total(aligned gt 0) && multi ne 2 then cgoplot,st.polsed.wav,st.polsed.(Ngrains+1)*fact/normpol,color='Teal'
    if total(aligned gt 0) && multi eq 2 then cgoplot,st.polsed.wav,st.polsed.(Ngrains+1)*fact/normpol,color='black'
    

    if data_exists then BEGIN
    	if ptr_valid(!dustem_data.polsed) then begin

			ind_filt=where((*!dustem_data.polsed).filt_names NE 'SPECTRUM',count_filt)
	        ;=== Plot the data
	        IF count_filt NE 0 THEN BEGIN

				if !dustem_show_plot EQ 2 or multi eq 2 then begin

				endif else begin

					; Convert data which Pnu in MJy/sr/1d20 into nu*Pnu in W/m2/sr/1d20

	     			fact = (3.e8/(1.e-6*(*!dustem_data.polsed).wav(ind_filt)))/1.d40

				endelse

	        	dustem_polsed = dustem_compute_polsed(p_dim,st)*fact;dustem_compute_polsed(p_dim,st,cont=cont)*fact
				

				if !dustem_show_plot EQ 2 or multi eq 2 then begin

	        			normpol = dustem_polsed

				endif else begin

	        			normpol = dustem_polsed * 0. + 1

				endelse

	            plotsym,0,/FILL

	            
	            cgoplot,((*!dustem_data.polsed).wav)(ind_filt),((*!dustem_data.polsed).values)(ind_filt)*fact/normpol(ind_filt),psym=8,_extra=extra,color='Orchid',thick=2;use_col_sed_filt
    	        if multi ne 2 then cgoplot,((*!dustem_data.polsed).wav),dustem_polsed/normpol,psym=6,color='red',symsize=2
	              
	            
	            if not keyword_set(noerrbars) then err_bar,((*!dustem_data.polsed).wav)(ind_filt),((*!dustem_data.polsed).values)(ind_filt)*fact/normpol(ind_filt),yrms=3.*((*!dustem_data.polsed).sigma)(ind_filt)/2.*fact/normpol(ind_filt),color=cgColor('Orchid');use_col_sed_filt

	        	; PLot color corrected POLSED
	            if keyword_set(ps) then plotsym,8,thick=8 else plotsym,8
	        	if multi eq 0 then cgoplot,((*!dustem_data.polsed).wav)(ind_filt),dustem_polsed(ind_filt)/normpol(ind_filt),psym=8,syms=2,_extra=extra,col='red'
	        ENDIF

        
        IF tag_exist(*!dustem_scope,'SYNCHROTRON') THEN BEGIN
        indx=where((*(*!dustem_fit).param_descs) EQ 'dustem_create_stokes_3',counttx)
        
        if total(counttx) then frac_synch=p_dim(indx) else frac_synch=0.7 ;THIS LINE IS TO TAKE INTO ACCOUNT WHEN THE AMPLITUDE OF THE SYNCHROTRON IS FROZEN
        

        cgoplot,st.polsed.wav,(*(*!dustem_plugin).synchrotron)*frac_synch(0)*(3.e8/(1.e-6*(st.polsed.wav)))/1.d40,color='Crimson',linestyle=3
        cgoplot,st.polsed.wav,st.polsed.em_tot*1./(4.*!pi)*1.e17/1d20+((*(*!dustem_plugin).synchrotron))*frac_synch(0)*(3.e8/(1.e-6*(st.polsed.wav)))/1.d40,color='black' 

        
        ENDIF
      

        endif

        
        
        
	endif		 
endif ;else BEGIN

	if keyword_set(Pfrac) then begin ; DEPRECATED

        ; Also show prediction for polarized SED
        if not keyword_set(ps) then tit='Polarization fraction in emission'
        ytit=textoidl('P/I')

        plot_oi,st.polsed.wav,st.polsed.(Ngrains+1)/st.sed.(Ngrains+1),/nodata,_extra=extra,xtit=xtit,ytit=ytit,tit=tit,/xlog,xr=xr,yr=yr
        if (total(aligned) gt 0) then oplot,st.polsed.wav,st.polsed.(Ngrains+1)/st.sed.(Ngrains+1)
        for i = 0, Ngrains-1 do if aligned(i) then oplot,st.polsed.wav,st.polsed.(i+1)/st.sed.(Ngrains+1),color=colors(i+1),psym=psym,linestyle=ls(i+1)

 
		if keyword_Set(almabands) then begin
			oplot,870*[1,1],yr,linestyle=1
			oplot,1300*[1,1],yr,linestyle=1
			oplot,3100*[1,1],yr,linestyle=1
		endif

        if data_exists then begin

			if ptr_valid(!dustem_data.polfrac) then begin

           		;=== Plot the data
           		ind_filt_polfrac=where((*!dustem_data.polfrac).filt_names NE 'SPECTRUM',count_filt_polfrac)
           		IF count_filt_polfrac NE 0 THEN BEGIN

              		plotsym,0,/FILL
              		oplot,((*!dustem_data.polfrac).wav)(ind_filt_polfrac),((*!dustem_data.polfrac).values)(ind_filt_polfrac),psym=8,_extra=extra,color=use_col_sed_filt
              		if not keyword_set(noerrbars) then err_bar,((*!dustem_data.polfrac).wav)(ind_filt_polfrac),((*!dustem_data.polfrac).values)(ind_filt_polfrac),yrms=2*((*!dustem_data.polfrac).sigma)(ind_filt_polfrac),color=use_col_sed_filt
					print,((*!dustem_data.polfrac).wav)(ind_filt_polfrac),((*!dustem_data.polfrac).values)(ind_filt_polfrac)
	   			endif

        		; PLot color corrected POLFRAC

				; VG : P & I have almost identical color correction => no effect on P/I
				ind_filt=where((*!dustem_data.polsed).filt_names NE 'SPECTRUM',count_filt)
                if keyword_set(ps) then plotsym,8,thick=8 else plotsym,8

        		dustem_polsed 	= dustem_compute_polsed(p_dim,st.polsed)

        		dustem_sed_tmp 	= dustem_compute_sed(p_dim,st);dustem_compute_sed(p_dim,st,cont=cont)

				dustem_sed = dustem_polsed
				for i = 0, count_filt-1 do begin
					j=where((*!dustem_data.polsed).filt_names(ind_filt(i)) eq (*!dustem_data.sed).filt_names,count)
					if count eq 1 then dustem_sed(i) = dustem_sed_tmp(j(0))
				endfor 

           	endif

        endif

	endif ;else begin

; 	endelse
; endelse

if keyword_set(ps) && not keyword_set(donotclose) then begin

    device,/close
    set_plot,'X'

endif

the_end:

END