PRO dustem_activate_plugins,p_min,st=st,help=help,use_previous_fortran=use_previous_fortran

;+
; NAME:
;    dustem_activate_plugins

;

; PURPOSE:

;    activates the plugins invoked by the parameter description vector (pd) and the fixed parameter description vector (fpd)

;

; CATEGORY:

;    DustEMWrapp, Distributed, Mid-Level, Plugins
;

; CALLING SEQUENCE:

;    dustem_activate_plugins,p_min[,st][,/help] 

;

; INPUTS:

;    p_min = dustem parameter values normalized to initial parameter values

;

; OPTIONAL INPUT PARAMETERS:

;

; OUTPUTS:

;    None

;

; OPTIONAL OUTPUT PARAMETERS:

;    st = Dustem output structure, with contribution from pluggins taken into account

;

; ACCEPTED KEY-WORDS:

;    use_previous_fortran = if set, uses the output of the previous fortran run, and does not run the fortran.

;    help                  = if set, print this help

;

; COMMON BLOCKS:
;    None

;

; SIDE EFFECTS:
;    None

;

; RESTRICTIONS:

;    The DustEM fortran code must be installed
;    The DustEMWrap idl code must be installed

;

; PROCEDURES AND SUBROUTINES USED:

;

; EXAMPLES

;    dustem_activate_plugins, p_min ,st=st

;
; MODIFICATION HISTORY:

;    Written by IC

;    Evolution details on the DustEMWrap gitlab.
;    See http://dustemwrap.irap.omp.eu/ for FAQ and help.  

;-


IF keyword_set(help) THEN BEGIN
  doc_library,'dustem_activate_plugins'
  goto,the_end
  output=0.
ENDIF

p_dim = p_min * (*(*!dustem_fit).param_init_values)

;This is to account for fixed parameters
;caution: this assumes there are variable parameters, could not always be the case ...
IF isa((*!dustem_fit).fixed_param_descs) THEN BEGIN 

    ;concatenating the parameter vectors
    param_descs =  [(*(*!dustem_fit).param_descs),(*(*!dustem_fit).fixed_param_descs)]  

    param_values = [p_dim,(*(*!dustem_fit).fixed_param_init_values)]

    param_values = param_values[sort(param_descs)] ;should we put it back to the way it was?
    param_descs = param_descs[sort(param_descs)]
    ;Taking care of the param_func vector (not sure if this is of any use anymore)

    dustem_set_func_ind, param_descs, param_values ; this sets  (*(*!dustem_fit).param_func)
    param_func = (*(*!dustem_fit).param_func)
    dustem_set_func_ind, (*(*!dustem_fit).param_descs), p_dim ;setting the pointers back to their original valyes 

ENDIF ELSE BEGIN

    param_descs = (*(*!dustem_fit).param_descs)
    param_values = p_dim
    param_func = (*(*!dustem_fit).param_func)

ENDELSE

;stop

;Run the plugins, according to their scopes 

;normal (additive) plugins come first as they can be used by other plugins 

;The ISRF plugin is next - we can always change its scope however we please to. DustEm runs here. This is with the /force_dustem_run keyword. 

;The plugins that use the DustEM output come next - we can always change their 'common' scope 

;IF /avoid is used the specified scopes are avoided. They're considered when /avoid is missing.

;using '**' so not to write the entire scope

;=== This runs plugins with scopes including STELLAR, REPLACE and ISRF

;dustem_run_plugins, p_dim ,param_descs, param_values, param_func, ['ADD','REPLACE'], avoid=1,use_previous_fortran=use_previous_fortran
dustem_run_plugins, p_dim ,param_descs, param_values, param_func, ['ADD_SED'], avoid=1,use_previous_fortran=use_previous_fortran

;=== The line below makes fawlty go Segmentation fault. st is undefined at that stage
;=== it would run fine if avoid was set to 1

;IC: I think the segmentation fault comes from the fact that the user wants to use models that have the /pol keyword in the GRAIN.DAT file without being in polarization mode.

;dustem_run_plugins, p_dim ,param_descs, param_values, param_func, ['STELLAR','ISRF'] ,force_dustem_run=1,st=st,use_previous_fortran=use_previous_fortran ;dustem output is available at this step.

dustem_run_plugins, p_dim ,param_descs, param_values, param_func, ['ADD_ISRF','REPLACE_ISRF'] ,force_dustem_run=1,st=st,use_previous_fortran=use_previous_fortran ;dustem output is available at this step.

;added this small condition to ensure that dustem is run
;(if no ISRF plugin is used)  

; if ~isa(st) then begin
;     st=dustem_run(p_dim)
;     !dustem_current=ptr_new(st)
; endif
;THE ABOVE CONDITION IS UNNECESSARY SINCE DUSTEM IS CALLED ABOVE WHETHER PLUGINS ARE RUN OR NOT.

;dustem_run_plugins, p_dim ,param_descs, param_values, param_func, ['REPLACE'],use_previous_fortran=use_previous_fortran
dustem_run_plugins, p_dim ,param_descs, param_values, param_func, ['REPLACE_SED'],use_previous_fortran=use_previous_fortran

the_end:

END