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src/idl/dustemcgwin_dataset.pro 249 KB
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PRO dustemcgwin_dataset, st, dustem_interp, dustem_spec, extra_spec, dataset=dataset, norm=norm, refresh=refresh, nodata=nodata, position=position,positive_only=positive_only, negative_only=negative_only, _extra=_extra
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;############################################################################################
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if !run_pol then begin
    if isa(position) then begin
        if keyword_set(norm) then pospltxt = [position(0)+0.02,position(3)-0.02] else pospltxt = [position(0)+0.02,position(3)-0.03]  
    endif
endif else begin
    if isa(position) then pospltxt = [position(0)+0.02,position(3)-0.05] ;hard-coded but we can find a way 
endelse 

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wavs=dustem_get_wavelengths()
n_plgns = n_tags(*!dustem_plugin)
Ngrains=(*!dustem_params).Ngrains
use_cols=dustem_grains_colors(Ngrains,/cgplot)
use_cols[1]='Cornflower'
fact = 1.e4*(*!dustem_HCD)/(4.*!pi)/(3.e8/1.e-6/st.sed.wav)*1.e20/1.e7 ; st.sed.wav and st.polsed.wav should remain the same
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degtorad = !pi/180 ;factor that the arctan will be devided by in order to have an axis in degrees. Talk to JP maybe he wants angle in radians.
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clrs_plgns = ['Rosy Brown','Gold','Light Coral','Slate Blue','Dark Khaki','Salmon','Dark Green'] ;FOR NOW
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;NB: plugins need to have different colors for extinction because they are not the same plugins. New array required.

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scopes=tag_names((*!dustem_plugin))
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tgnms_extra = tag_names(_extra)
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;THIS BLOCK WILL HAVE TO BE MODIFIED CONSIDERABLY
;SO FAR ALL DATASETS HAVE ONE XR AND ONE YR
;WHEN USING EMISSION AND EXTINCTION BOTH XR_M AND XR_X HAVE TO BE SET


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ind_xrm = where(strmid(tgnms_extra,0,4) EQ 'XR_M',ct_xrm)
ind_xrx = where(strmid(tgnms_extra,0,4) EQ 'XR_X',ct_xrx)
ind_yrm = where(strmid(tgnms_extra,0,4) EQ 'YR_M',ct_yrm)
ind_yrx = where(strmid(tgnms_extra,0,4) EQ 'YR_X',ct_yrx)
ct_m = ct_xrm+ct_yrm
ct_x = ct_xrx+ct_yrx

IF ct_m+ct_x NE 0 THEN BEGIN

    IF ct_xrm NE 0 THEN xr_m = (_extra.(ind_xrm))
    IF ct_xrx NE 0 THEN xr_x = (_extra.(ind_xrx))
    IF ct_yrm NE 0 THEN yr_m = (_extra.(ind_yrm))
    IF ct_yrx NE 0 THEN yr_x = (_extra.(ind_yrx))

ENDIF ELSE BEGIN

    ind_xr = where(strmid(tgnms_extra,0,2) eq 'XR')
    ind_yr = where(strmid(tgnms_extra,0,2) eq 'YR')
    if ind_xr EQ -1 then xr=[1.00E+00,1.00E+05] else xr=(_extra.(ind_xr))
    if ind_yr EQ -1 then yr=[5.00E-03,1.00E+08] else yr=(_extra.(ind_yr))
    
ENDELSE 
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frmt0='(A46)'
frmt1='(1E11.4)'
frmt2='(10F10.2)'
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;############################################################################################
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;NB: SUSPETING A MAJR ERROR IN THE MATCHING OF STRUCTURE (FOR THE PLOTTING OF THE HIDDEN POINTS)
;INVERTING ALL THE INDICES THAT ARE CONCERNED BY THIS. 
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;THIS CAN CREATE ERRORS (EVEN THOUGH IT WAS WRONG AND WORKED) SO REMEMBER YOU DID THIS. 

;I DO NOT REMEMBER RUNNING ANY OF THE TESTS HERE. 
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if keyword_set(dataset) then begin
;!run_pol is implied for QSED/USED/POLSED etc...
    Case strupcase(dataset) of 
    
        'SED': begin
            
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            IF ct_m NE 0 then begin
                xr=xr_m
                yr=yr_m 
            endif
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            vectw=DINDGEN(1001)*(alog10(1E7) - alog10(1E5))/(1000 - 1L) + alog10(1E5)
            vectw=10^vectw[1:*]
            vectw=[wavs,vectw]
            vectx=vectw*0+1
            
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            idx_filt=where((*(*!dustem_data).sed).filt_names NE 'SPECTRUM',ct_filt)
            idx_spec=where((*(*!dustem_data).sed).filt_names EQ 'SPECTRUM',ct_spec)
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            ;#1) get the plotting keywords (pertaining to each data set) @here when the _extra structure is ready
            
            if keyword_set(nodata) then begin ;when the data is not present
            
                if keyword_set(norm) then begin ;normalized plot
                    
                    xtit=textoidl('\lambda (\mum)')
                    if !run_pol then xtit = ''
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                    cgplot,vectw,vectx,/xlog,/ys,xs=1,pos=position,noerase=1,xtickformat='(A1)',color='Black',xr=xr,xtit=xtit,yr=[0.0,2.0],yticks=2,ymino=2,xticklen=0.1,ytickformat='(F6.2)',charsize=1.0
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                    xyouts,pospltxt[0],pospltxt[1],textoidl('norm'),color=0,/normal,charsize=1.1                        
                
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                endif ;else begin ;normal plot
                
                if not keyword_set(norm) then begin
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                    ;/NODATA
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                    cgplot,wavs,wavs,/nodata,/ylog,/xlog,/ys,xs=9,pos=position,noerase=1,charsize=1.15,xtickformat='(A1)',color='Powder Blue',xr=xr,xtit='',yr=yr,psym=8,syms=0.8  
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                    axis, xaxis=1 ,xlog=1 ,xrange=((!const.c*1E6/xr)*1E-9),charsize=1.15,xtitle=textoidl('\nu (GHz)'),xticklen=0.05,xminor=10,color='black'
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                    xyouts,pospltxt[0],pospltxt[1],textoidl('I_{\nu} (MJy/sr)'),color=0,/normal,charsize=1.3;,charthick=2.0
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                ;endelse  
                endif
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            endif ;else begin ;when the data is present - to be replaced by if to test as a solution to the refreshing problem
            if not keyword_set(nodata) then begin
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                if keyword_set(norm) then begin 
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                    if keyword_set(refresh) then begin ;The data points in the plot that are being refreshed 
                        
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                        IF ct_spec NE 0 THEN BEGIN
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                            xx=((*(*!dustem_data).sed).wav)[idx_spec]
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                            yy=dustem_interp[idx_spec]
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                            rms=3.*((*(*!dustem_data).sed).sigma)(idx_spec)/2.
                            cgoplot,xx,((*(*!dustem_data).sed).values)[idx_spec]/yy,color='Powder Blue',psym=16,syms=0.8,noerase=1,pos=position
                            cgerrplot,((*(*!dustem_data).sed).wav)(idx_spec),(((*(*!dustem_data).sed).values)[idx_spec]-rms)/yy,(((*(*!dustem_data).sed).values)[idx_spec]+rms)/yy,color='Powder Blue'
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                        ENDIF
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                        IF ct_filt NE 0 THEN BEGIN
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                            xx=((*(*!dustem_data).sed).wav)[idx_filt]
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                            yy=dustem_interp[idx_filt]
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                            rms=3.*((*(*!dustem_data).sed).sigma)(idx_filt)/2. 
                            cgoplot,xx,((*(*!dustem_data).sed).values)[idx_filt]/yy,psym=16,color='Dodger Blue',syms=0.8,noerase=1,pos=position
                            cgerrplot,((*(*!dustem_data).sed).wav)(idx_filt),(((*(*!dustem_data).sed).values)[idx_filt]-rms)/yy,(((*(*!dustem_data).sed).values)[idx_filt]+rms)/yy,color='Dodger Blue';,/overplot 
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                        ENDIF
                            
                        
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                    endif ;else begin ;The data points in the plot that remain unchanged ; UNNECESSARY BLOCK but needede to limit erros when calls are made with missing keywords.
                        ;stop
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                    if not keyword_set(refresh) then begin 
                        ;stop   
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                        xtit=textoidl('\lambda (\mum)')
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                        if !run_pol then begin
                            xtit = ''
                            xtickformat='(A1)'
                        endif else xtickformat='(F10.2)' ;MAYBE YOU'LL CHANGE THIS FORMAT TO EXPONENTIAL NOTATION
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                        cgplot,vectw,vectx,/xlog,/ys,xs=1,pos=position,noerase=1,xtickformat=xtickformat,color='Black',xr=xr,xtit=xtit,yr=[0.0,2.0],yticks=2,ymino=2,xticklen=0.1,ytickformat='(F6.2)',charsize=1.0
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                        xyouts,pospltxt[0],pospltxt[1],textoidl('norm'),color=0,/normal,charsize=1.1
                    
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                    ;endelse
                    endif
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                endif ;else begin ; normal plot
                if not keyword_set(norm) then begin        
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                    if keyword_set(refresh) then begin ;The data points in the plot are being refreshed
                        
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                        ;Plotting of the spectra of the dust species
                        FOR i=0L,Ngrains-1 DO BEGIN
                            cgoplot,st.sed.wav,st.sed.(i+1)*fact,color=use_cols[i],pos=position,noerase=1
                        ENDFOR
                        
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                        ;Plotting of the plugins.
                        for i=0L,n_plgns-1 do begin
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                            if isa((*!dustem_plugin).(0).spec) then begin 
                            
                                IF total(strsplit((*(*!dustem_plugin).(i).scope),'+',/extract) EQ 'ADD_SED') THEN begin
                                    cgoplot,st.sed.wav,((*(*!dustem_plugin).(i).spec)[*,0]),color=clrs_plgns[i],pos=position,noerase=1,linestyle=2               
                                ENDIF
                                
                            endif
                            
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                        endfor
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                        ;PLotting of the interpolates corresponding to spectrum and filter points
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                        IF ct_spec NE 0 THEN BEGIN
                        
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                            xx=((*(*!dustem_data).sed).wav)[idx_spec]
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                            yy=dustem_interp[idx_spec]
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                            cgoplot,xx,yy,color='Indian Red',pos=position,psym=7,syms=1,noerase=1   
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                        ENDIF
                        
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                        IF ct_filt NE 0 THEN BEGIN
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                            xx=((*(*!dustem_data).sed).wav)[idx_filt]
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                            yy=dustem_interp[idx_filt]
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                            cgoplot,xx,yy,color='red',pos=position,psym=6,syms=2,noerase=1
                        ENDIF
                        
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                        ;Plotting of the total dust emission spectrum
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                        cgoplot,st.sed.wav,dustem_spec,pos=position,noerase=1,/xlog,/ys,/xs,/ylog
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                    endif ;else begin ;The data points in the plot that remain unchanged.
                        ;stop
                    if not keyword_set(refresh) then begin
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                        ;Spectrum points are treated before for plotting reasons. 
                        if ct_spec ne 0 then begin 
                            
                            ;Plotting of spectrum data points (to be fitted)
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                            cgplot,((*(*!dustem_data).sed).wav)(idx_spec),((*(*!dustem_data).sed).values)(idx_spec),/ylog,/xlog,/ys,xs=9,pos=position,noerase=1,xtit=' ',charsize=1.15,xtickformat='(A1)',color='Powder Blue',xr=xr,yr=yr,psym=16,syms=0.8,ytickformat='dstmwrp_exp'                
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                            ;Plotting of the spectrum error points
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                            rms=3.*((*(*!dustem_data).sed).sigma)(idx_spec)/2.
                            cgerrplot,((*(*!dustem_data).sed).wav)(idx_spec),((*(*!dustem_data).sed).values)(idx_spec)-rms,((*(*!dustem_data).sed).values)(idx_spec)+rms,color='Powder Blue'
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                        endif
                        
                        if ct_filt ne 0 then begin
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                            ;Plotting of filter data points (to be fitted) + testing for prior plotting                         
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                            if ct_spec ne 0 then cgoplot,((*(*!dustem_data).sed).wav)(idx_filt),((*(*!dustem_data).sed).values)(idx_filt),charsize=1.15,color='Dodger Blue',psym=16,syms=0.8,pos=position,/ys,xs=9,noerase=1,xtickformat='(A1)',xr=xr,yr=yr,ytickformat='dstmwrp_exp',/ylog,/xlog else $
                                cgplot,((*(*!dustem_data).sed).wav)(idx_filt),((*(*!dustem_data).sed).values)(idx_filt),charsize=1.15,color='Dodger Blue',psym=16,syms=0.8,pos=position,/ys,xs=9,noerase=1,xtickformat='(A1)',xtit=' ',xr=xr,yr=yr,ytickformat='dstmwrp_exp',/ylog,/xlog
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                            ;Plotting of the filter error points
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                            rms=3.*((*(*!dustem_data).sed).sigma)(idx_filt)/2.;/dustem_sed(idx_filt)
                            cgerrplot,((*(*!dustem_data).sed).wav)(idx_filt),((*(*!dustem_data).sed).values)(idx_filt)-rms,((*(*!dustem_data).sed).values)(idx_filt)+rms,color='Dodger Blue'
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                        endif
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                        ;Plotting of frequency axis
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                        ;save_x=!x & save_y=!y & save_z=!z & save_p=!p & save_d=!d
                        ;save_scaling=1
                        ;use_xrange=((!const.c*1E6/(xr))*1E-9)
                        ;order=sort(use_xrange)
                        ;use_xrange=use_xrange[order]
                        ;print,use_xrange
                        ;stop
                        IF !dustemwrap_which_language NE 'fawlty' THEN BEGIN
                            axis, xaxis=1, xlog=1, xs=1, xminor=10, xticklen=0.05, xrange=use_xrange,charsize=1.15,xtitle=textoidl('\nu (GHz)'),color=0
                        ENDIF
                        ;axis, xaxis=1, xlog=1, xs=1, xminor=10, xticklen=0.05, xrange=use_xrange,charsize=1.15,xtitle=textoidl('\nu (GHz)'),color=0,save=save_scaling,/ynozero
                        ;!x=save_x & !y=save_y & !z=save_z & !p=save_p & !d=save_d

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                        xyouts,pospltxt[0],pospltxt[1],textoidl('I_{\nu} (MJy/sr)'),color=0,/normal,charsize=1.3;,charthick=2.0
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                        ;Locating all the hidden data points (spectrum+filter)
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                        match2,((*(*!dustem_data).sed).wav),((*(*!dustem_show).sed).wav),show_sedpts,fit_sedpts ;only show_sedpts is needed
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                        idx_rmv_sed=where(fit_sedpts eq -1, ct_hdnpts) ; indices of the points to hide
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                        ;Locating the hidden spectrum and filter data points                                        
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                        idx_filt_hdn = where((((*(*!dustem_show).sed).filt_names))(idx_rmv_sed) NE 'SPECTRUM',ct_filt_hdn)
                        idx_spec_hdn = where(((*(*!dustem_show).sed).filt_names)(idx_rmv_sed) EQ 'SPECTRUM',ct_spec_hdn)
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                        if ct_hdnpts ne 0 then begin ;Hidden data points are present 
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                            ;stop
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                            if ct_spec_hdn ne 0 then begin
                                ;Plotting of hidden spectrum data points
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                                cgoplot,(((*(*!dustem_show).sed).wav)[idx_rmv_sed])(idx_spec_hdn),(((*(*!dustem_show).sed).values)[idx_rmv_sed])(idx_spec_hdn),pos=position,/ylog,/xlog,/ys,xs=9,noerase=1,charsize=1.15,xtickformat='(A1)',color='Black',xr=xr,yr=yr,psym=16,syms=0.8
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                                ;Plotting of hidden spectrum error points
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                                rms=3.*(((*(*!dustem_show).sed).sigma)[idx_rmv_sed])(idx_spec_hdn)/2.
                                cgerrplot,(((*(*!dustem_show).sed).wav)[idx_rmv_sed])(idx_spec_hdn),(((*(*!dustem_show).sed).values)[idx_rmv_sed])(idx_spec_hdn)-rms,(((*(*!dustem_show).sed).values)[idx_rmv_sed])(idx_spec_hdn)+rms,color='Black'
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                            endif                                            
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                            if ct_filt_hdn then begin
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                            ;Plotting of hidden filter data points 
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                                cgoplot,(((*(*!dustem_show).sed).wav)[idx_rmv_sed])(idx_filt_hdn),(((*(*!dustem_show).sed).values)[idx_rmv_sed])(idx_filt_hdn),pos=position,/ylog,/xlog,/ys,xs=9,noerase=1,charsize=1.15,xtickformat='(A1)',color='Black',xr=xr,yr=yr,psym=16,syms=0.8                                           
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                                ;Plotting of hidden filter error point
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                                rms=3.*(((*(*!dustem_show).sed).sigma)[idx_rmv_sed])(idx_filt_hdn)/2.
                                cgerrplot,(((*(*!dustem_show).sed).wav)[idx_rmv_sed])(idx_filt_hdn),(((*(*!dustem_show).sed).values)[idx_rmv_sed])(idx_filt_hdn)-rms,(((*(*!dustem_show).sed).values)[idx_rmv_sed])(idx_filt_hdn)+rms,color='Black'
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                            endif
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                        endif    
                        
                        
                    
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                    ;endelse 
                    endif
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                ;endelse 
                endif            
            ;endelse
            endif 
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        ;stop    
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        end
        
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        'EXT': begin ;BE VERY CAREFUL THE EXTINCTION STRUCTURE AS REDERED BY DUSTEM IS DIFFERENT THAN THE EMISSION ONE
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;             ;So far manually changing xr and yr.
;             
;             xr=[0.01,30]
;             yr=[1.00E-06,10]
            
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            IF ct_x NE 0 then begin
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                xr=xr_x 
                yr=yr_x
                
            ENDIF
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            vectw=DINDGEN(1001)*(alog10(1E7) - alog10(1E5))/(1000 - 1L) + alog10(1E5)
            vectw=10^vectw[1:*]
            vectw=[wavs,vectw]
            vectx=vectw*0+1
            
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            idx_filt=where((*(*!dustem_data).ext).filt_names NE 'SPECTRUM',ct_filt)
            idx_spec=where((*(*!dustem_data).ext).filt_names EQ 'SPECTRUM',ct_spec)
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            ;#1) get the plotting keywords (pertaining to each data set) @here when the _extra structure is ready
            
            if keyword_set(nodata) then begin ;when the data is not present
            
                if keyword_set(norm) then begin ;normalized plot
                    
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                    xtit=textoidl('1/\lambda (\mum^{-1})')
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                    if !run_pol then xtit = ''
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                    cgplot,1/vectw,vectx,/xlog,/ys,xs=1,pos=position,noerase=1,xtickformat='(A1)',color='Black',xr=xr,xtit=xtit,yr=[0.0,2.0],yticks=2,ymino=2,xticklen=0.1,ytickformat='(F6.2)',charsize=1.0
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                    xyouts,pospltxt[0],pospltxt[1],textoidl('norm'),color=0,/normal,charsize=1.1                        
                
                endif ;else begin ;normal plot
                
                if not keyword_set(norm) then begin
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                    ;/NODATA    
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                    cgplot,wavs,wavs,/nodata,/ylog,/xlog,/ys,xs=9,pos=position,noerase=1,charsize=1.15,xtickformat='(A1)',color='Powder Blue',xr=xr,xtit='',yr=yr,psym=8,syms=0.8  
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                    axis, xaxis=1 ,xlog=1 ,xrange=((!const.c*1E6*xr)*1E-9),charsize=1.15,xtitle=textoidl('\nu (GHz)'),xticklen=0.05,xminor=10,color='black'
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                    xyouts,pospltxt[0],pospltxt[1],textoidl('\tau_{EXT}'),color=0,/normal,charsize=1.3;,charthick=2.0
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                ;endelse  
                endif
            
            endif ;else begin ;when the data is present - to be replaced by if to test as a solution to the refreshing problem
            if not keyword_set(nodata) then begin
                if keyword_set(norm) then begin 
                    
                    if keyword_set(refresh) then begin ;The data points in the plot that are being refreshed 
                        
                        IF ct_spec NE 0 THEN BEGIN
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                            xx=((*(*!dustem_data).ext).wav)[idx_spec]
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                            yy=dustem_interp[idx_spec]
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                            rms=3.*((*(*!dustem_data).ext).sigma)(idx_spec)/2.
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                            indzero = where(yy NE 0, ct_zero)
                            IF ct_zero NE 0 THEN BEGIN
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                                cgoplot,(1/xx)[indzero],(((*(*!dustem_data).ext).values)[idx_spec])[indzero]/yy[indzero],color='Powder Blue',psym=16,syms=0.8,noerase=1,pos=position
                                cgerrplot,(1/((*(*!dustem_data).ext).wav)(idx_spec))[indzero],((((*(*!dustem_data).ext).values)[idx_spec])[indzero]-rms[indzero])/yy[indzero],((((*(*!dustem_data).ext).values)[idx_spec])[indzero]+rms[indzero])/yy[indzero],color='Powder Blue'
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                            ENDIF
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                        ENDIF
                        
                        IF ct_filt NE 0 THEN BEGIN ; There are no filter points for now...
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                            xx=((*(*!dustem_data).ext).wav)[idx_filt]
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                            yy=dustem_interp[idx_filt]
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                            rms=3.*((*(*!dustem_data).ext).sigma)(idx_filt)/2.
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                            indzero = where(yy NE 0, ct_zero)
                            IF ct_zero NE 0 THEN BEGIN
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                                cgoplot,(1/xx)[indzero],(((*(*!dustem_data).ext).values)[idx_filt])[indzero]/yy[indzero],psym=16,color='Dodger Blue',syms=0.8,noerase=1,pos=position
                                cgerrplot,(1/((*(*!dustem_data).ext).wav)(idx_filt))[indzero],((((*(*!dustem_data).ext).values)[idx_filt])[indzero]-rms[indzero])/yy[indzero],((((*(*!dustem_data).ext).values)[idx_filt])[indzero]+rms[indzero])/yy[indzero],color='Dodger Blue';,/overplot 
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                            ENDIF
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                        ENDIF
                            
                        
                    endif ;else begin ;The data points in the plot that remain unchanged ; UNNECESSARY BLOCK but needede to limit erros when calls are made with missing keywords.
                        ;stop
                        
                    if not keyword_set(refresh) then begin 
                        ;stop   
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                        xtit=textoidl('1/\lambda (\mum^{-1})')
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                        if !run_pol then begin
                            xtit = ''
                            xtickformat='(A1)'
                        endif else xtickformat='(F10.2)' ;MAYBE YOU'LL CHANGE THIS FORMAT TO EXPONENTIAL NOTATION
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                        cgplot,1/vectw,vectx,/xlog,/ys,xs=1,pos=position,noerase=1,xtickformat=xtickformat,color='Black',xr=xr,xtit=xtit,yr=[0.0,2.0],yticks=2,ymino=2,xticklen=0.1,ytickformat='(F6.2)',charsize=1.0
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                        xyouts,pospltxt[0],pospltxt[1],textoidl('norm'),color=0,/normal,charsize=1.1
                    
                    ;endelse
                    endif
                    
                
                endif ;else begin ; normal plot
                if not keyword_set(norm) then begin        
                    if keyword_set(refresh) then begin ;The data points in the plot are being refreshed
                        
                        ;not so sure about the multiplicative factor
                        
                        ;Plotting of the spectra of the dust species
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                        FOR i=0L,Ngrains-1 DO BEGIN
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                            cgoplot,1/st.ext.wav,transpose((st.ext.(1))[i,*]+(st.ext.(2))[i,*])*(*!dustem_HCD)/1.0e21,color=use_cols[i],pos=position,noerase=1
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                        ENDFOR
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                        ;Plotting of the plugins.
                        for i=0L,n_plgns-1 do begin
                            
                            if isa((*!dustem_plugin).(0).spec) then begin 
                            
                                IF total(strsplit((*(*!dustem_plugin).(i).scope),'+',/extract) EQ 'ADD_EXT') THEN begin
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397
                                    cgoplot,1/st.ext.wav,((*(*!dustem_plugin).(i).spec)[*,0]),color=clrs_plgns[i],pos=position,noerase=1,linestyle=2               
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                                ENDIF
                                
                            endif
                            
                        endfor
                        
                                                
                        ;PLotting of the interpolates corresponding to spectrum and filter points
                           
                        IF ct_spec NE 0 THEN BEGIN
                        
0068116a   Ilyes Choubani   General update + ...
409
                            xx=((*(*!dustem_data).ext).wav)[idx_spec]
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                            yy=dustem_interp[idx_spec]
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411
                            cgoplot,1/xx,yy,color='Indian Red',pos=position,psym=7,syms=1,noerase=1   
67bd858a   Ilyes Choubani   Replication of th...
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                        ENDIF
                        
                        
                        IF ct_filt NE 0 THEN BEGIN
0068116a   Ilyes Choubani   General update + ...
416
                            xx=((*(*!dustem_data).ext).wav)[idx_filt]
67bd858a   Ilyes Choubani   Replication of th...
417
                            yy=dustem_interp[idx_filt]
afde94a3   Ilyes Choubani   general update
418
                            cgoplot,1/xx,yy,color='red',pos=position,psym=6,syms=2,noerase=1
67bd858a   Ilyes Choubani   Replication of th...
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                        ENDIF
                        
                        
                        ;Plotting of the total dust emission spectrum
afde94a3   Ilyes Choubani   general update
423
                        cgoplot,1/st.ext.wav,dustem_spec,pos=position,noerase=1,/xlog,/ys,/xs,/ylog
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                    endif ;else begin ;The data points in the plot that remain unchanged.
                        ;stop
                    if not keyword_set(refresh) then begin
                        ;Spectrum points are treated before for plotting reasons. 
                        if ct_spec ne 0 then begin 
                            
                            ;Plotting of spectrum data points (to be fitted)
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                            cgplot,1/((*(*!dustem_data).ext).wav)(idx_spec),((*(*!dustem_data).ext).values)(idx_spec),/ylog,/xlog,/ys,xs=9,pos=position,noerase=1,xtit=' ',charsize=1.15,xtickformat='(A1)',color='Powder Blue',xr=xr,yr=yr,psym=16,syms=0.8,ytickformat='dstmwrp_exp'                
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                            ;Plotting of the spectrum error points
0068116a   Ilyes Choubani   General update + ...
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                            rms=3.*((*(*!dustem_data).ext).sigma)(idx_spec)/2.
                            cgerrplot,1/((*(*!dustem_data).ext).wav)(idx_spec),((*(*!dustem_data).ext).values)(idx_spec)-rms,((*(*!dustem_data).ext).values)(idx_spec)+rms,color='Powder Blue'
67bd858a   Ilyes Choubani   Replication of th...
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                        endif
                        
                        if ct_filt ne 0 then begin
                        
                            ;Plotting of filter data points (to be fitted) + testing for prior plotting                         
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445
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                            if ct_spec ne 0 then cgoplot,1/((*(*!dustem_data).ext).wav)(idx_filt),((*(*!dustem_data).ext).values)(idx_filt),charsize=1.15,color='Dodger Blue',psym=16,syms=0.8,pos=position,/ys,xs=9,noerase=1,xtickformat='(A1)',xr=xr,yr=yr,ytickformat='dstmwrp_exp',/ylog,/xlog else $
                                cgplot,1/((*(*!dustem_data).ext).wav)(idx_filt),((*(*!dustem_data).ext).values)(idx_filt),charsize=1.15,color='Dodger Blue',psym=16,syms=0.8,pos=position,/ys,xs=9,noerase=1,xtickformat='(A1)',xtit=' ',xr=xr,yr=yr,ytickformat='dstmwrp_exp',/ylog,/xlog
67bd858a   Ilyes Choubani   Replication of th...
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                            ;Plotting of the filter error points
0068116a   Ilyes Choubani   General update + ...
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                            rms=3.*((*(*!dustem_data).ext).sigma)(idx_filt)/2.;/dustem_sed(idx_filt)
                            cgerrplot,1/((*(*!dustem_data).ext).wav)(idx_filt),((*(*!dustem_data).ext).values)(idx_filt)-rms,((*(*!dustem_data).ext).values)(idx_filt)+rms,color='Dodger Blue'
67bd858a   Ilyes Choubani   Replication of th...
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                        endif
                        
                        
                        ;Plotting of frequency axis
e00f3269   Ilyes Choubani   corrected small e...
457
                        axis, xaxis=1, xlog=1, xs=1, xminor=10, xticklen=0.05, xrange=((!const.c*1E6*xr)*1E-9),charsize=1.15,xtitle=textoidl('\nu (GHz)'),color=0
67bd858a   Ilyes Choubani   Replication of th...
458
                        
f2caf3f1   Ilyes Choubani   Debugging some er...
459
                        xyouts,pospltxt[0],pospltxt[1],textoidl('\tau_{EXT}'),color=0,/normal,charsize=1.3;,charthick=2.0
67bd858a   Ilyes Choubani   Replication of th...
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                        ;Locating all the hidden data points (spectrum+filter)
0068116a   Ilyes Choubani   General update + ...
462
                        match2,((*(*!dustem_data).ext).wav),((*(*!dustem_show).ext).wav),show_sedpts,fit_sedpts ;only show_sedpts is needed
74103816   Ilyes Choubani   small update
463
                        idx_rmv_sed=where(fit_sedpts eq -1, ct_hdnpts) ; indices of the points to hide
67bd858a   Ilyes Choubani   Replication of th...
464
                        ;Locating the hidden spectrum and filter data points                                        
0068116a   Ilyes Choubani   General update + ...
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                        idx_filt_hdn = where((((*(*!dustem_show).ext).filt_names))(idx_rmv_sed) NE 'SPECTRUM',ct_filt_hdn)
                        idx_spec_hdn = where(((*(*!dustem_show).ext).filt_names)(idx_rmv_sed) EQ 'SPECTRUM',ct_spec_hdn)
67bd858a   Ilyes Choubani   Replication of th...
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                        if ct_hdnpts ne 0 then begin ;Hidden data points are present 
                            ;stop
                            if ct_spec_hdn ne 0 then begin
                                ;Plotting of hidden spectrum data points
0068116a   Ilyes Choubani   General update + ...
472
                                cgoplot,1/(((*(*!dustem_show).ext).wav)[idx_rmv_sed])(idx_spec_hdn),(((*(*!dustem_show).ext).values)[idx_rmv_sed])(idx_spec_hdn),pos=position,/ylog,/xlog,/ys,xs=9,noerase=1,charsize=1.15,xtickformat='(A1)',color='Black',xr=xr,yr=yr,psym=16,syms=0.8
67bd858a   Ilyes Choubani   Replication of th...
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                                ;Plotting of hidden spectrum error points
0068116a   Ilyes Choubani   General update + ...
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                                rms=3.*(((*(*!dustem_show).ext).sigma)[idx_rmv_sed])(idx_spec_hdn)/2.
                                cgerrplot,1/(((*(*!dustem_show).ext).wav)[idx_rmv_sed])(idx_spec_hdn),(((*(*!dustem_show).ext).values)[idx_rmv_sed])(idx_spec_hdn)-rms,(((*(*!dustem_show).ext).values)[idx_rmv_sed])(idx_spec_hdn)+rms,color='Black'
67bd858a   Ilyes Choubani   Replication of th...
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                            endif                                            
                            
                            if ct_filt_hdn then begin
                            ;Plotting of hidden filter data points 
0068116a   Ilyes Choubani   General update + ...
481
                                cgoplot,1/(((*(*!dustem_show).ext).wav)[idx_rmv_sed])(idx_filt_hdn),(((*(*!dustem_show).ext).values)[idx_rmv_sed])(idx_filt_hdn),pos=position,/ylog,/xlog,/ys,xs=9,noerase=1,charsize=1.15,xtickformat='(A1)',color='Black',xr=xr,yr=yr,psym=16,syms=0.8                                           
67bd858a   Ilyes Choubani   Replication of th...
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                                ;Plotting of hidden filter error point
0068116a   Ilyes Choubani   General update + ...
484
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                                rms=3.*(((*(*!dustem_show).ext).sigma)[idx_rmv_sed])(idx_filt_hdn)/2.
                                cgerrplot,1/(((*(*!dustem_show).ext).wav)[idx_rmv_sed])(idx_filt_hdn),(((*(*!dustem_show).ext).values)[idx_rmv_sed])(idx_filt_hdn)-rms,(((*(*!dustem_show).ext).values)[idx_rmv_sed])(idx_filt_hdn)+rms,color='Black'
67bd858a   Ilyes Choubani   Replication of th...
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                            endif
                                                           
                        endif    
                        
                        
                    
                    ;endelse 
                    endif
                
                
                ;endelse 
                endif            
            ;endelse
            endif
          
b5314324   Ilyes Choubani   updating the plot...
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        end
        
67bd858a   Ilyes Choubani   Replication of th...
505
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        'POLEXT': begin 
            
4b745987   Ilyes Choubani   minor update
507
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510
            IF ct_x NE 0 then begin
                xr=xr_x
                yr=yr_x
            ENDIF
afde94a3   Ilyes Choubani   general update
511
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            vectw=DINDGEN(1001)*(alog10(1E7) - alog10(1E5))/(1000 - 1L) + alog10(1E5)
            vectw=10^vectw[1:*]
            vectw=[wavs,vectw]
            vectx=vectw*0+1
            
0068116a   Ilyes Choubani   General update + ...
517
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            idx_filt=where((*(*!dustem_data).polext).filt_names NE 'SPECTRUM',ct_filt)
            idx_spec=where((*(*!dustem_data).polext).filt_names EQ 'SPECTRUM',ct_spec)
18e4331f   Ilyes Choubani   general update (f...
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            ;#1) get the plotting keywords (pertaining to each data set) @here when the _extra structure is ready
            
            if keyword_set(nodata) then begin ;when the data is not present
            
                if keyword_set(norm) then begin ;normalized plot
                    
f2caf3f1   Ilyes Choubani   Debugging some er...
526
                    xtit=textoidl('1/\lambda (\mum^{_1})')
18e4331f   Ilyes Choubani   general update (f...
527
                    if !run_pol then xtit = ''
afde94a3   Ilyes Choubani   general update
528
                    cgplot,1/vectw,vectx,/xlog,/ys,xs=1,pos=position,noerase=1,xtickformat='(A1)',color='Black',xr=xr,xtit=xtit,yr=[0.0,2.0],yticks=2,ymino=2,xticklen=0.1,ytickformat='(F6.2)',charsize=1.0
18e4331f   Ilyes Choubani   general update (f...
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                    xyouts,pospltxt[0],pospltxt[1],textoidl('norm'),color=0,/normal,charsize=1.1                        
                
                endif else begin ;normal plot
afde94a3   Ilyes Choubani   general update
532
                    ;/NODATA
18e4331f   Ilyes Choubani   general update (f...
533
                    cgplot,wavs,wavs,/nodata,/ylog,/xlog,/ys,xs=9,pos=position,noerase=1,charsize=1.15,xtickformat='(A1)',color='Powder Blue',xr=xr,xtit='',yr=yr,psym=8,syms=0.8  
c0df0660   Ilyes Choubani   replaced all call...
534
                    axis, xaxis=1 ,xlog=1 ,xrange=((!const.c*1E6*xr)*1E-9),charsize=1.15,xtitle=textoidl('\nu (GHz)'),xticklen=0.05,xminor=10,color='black'
94c4dffa   Ilyes Choubani   update + fixes fo...
535
                    xyouts,pospltxt[0],pospltxt[1],textoidl('\tau_{PEXT}'),color=0,/normal,charsize=1.3;,charthick=2.0
18e4331f   Ilyes Choubani   general update (f...
536
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                endelse  
                
            
            endif else begin ;when the data is present 
            
                if keyword_set(norm) then begin 
                    
                    if keyword_set(refresh) then begin ;The data points in the plot that are being refreshed 
                        
                        IF ct_spec NE 0 THEN BEGIN
94c4dffa   Ilyes Choubani   update + fixes fo...
547
                            
0068116a   Ilyes Choubani   General update + ...
548
                            xx=((*(*!dustem_data).polext).wav)[idx_spec]
5f04fa07   Ilyes Choubani   general update
549
                            yy=dustem_interp[idx_spec]
0068116a   Ilyes Choubani   General update + ...
550
                            rms=3.*((*(*!dustem_data).polext).sigma)(idx_spec)/2.
94c4dffa   Ilyes Choubani   update + fixes fo...
551
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                            indzero = where(yy NE 0, ct_zero)
                            
                            IF ct_zero NE 0 THEN BEGIN
                            
0068116a   Ilyes Choubani   General update + ...
555
556
                                cgoplot,(1/xx)[indzero],(((*(*!dustem_data).polext).values)[idx_spec])[indzero]/yy[indzero],color='Powder Blue',psym=16,syms=0.8,noerase=1,pos=position
                                cgerrplot,(1/((*(*!dustem_data).polext).wav)(idx_spec))[indzero],((((*(*!dustem_data).polext).values)[idx_spec])[indzero]-rms[indzero])/yy[indzero],((((*(*!dustem_data).polext).values)[idx_spec])[indzero]+rms[indzero])/yy[indzero],color='Powder Blue'
94c4dffa   Ilyes Choubani   update + fixes fo...
557
558
                            
                            ENDIF
18e4331f   Ilyes Choubani   general update (f...
559
560
561
                        ENDIF
                        
                        IF ct_filt NE 0 THEN BEGIN
0068116a   Ilyes Choubani   General update + ...
562
                            xx=((*(*!dustem_data).polext).wav)[idx_filt]
5f04fa07   Ilyes Choubani   general update
563
                            yy=dustem_interp[idx_filt]
0068116a   Ilyes Choubani   General update + ...
564
                            rms=3.*((*(*!dustem_data).polext).sigma)(idx_filt)/2.
94c4dffa   Ilyes Choubani   update + fixes fo...
565
566
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                            indzero = where(yy NE 0, ct_zero)
                            IF ct_zero NE 0 THEN BEGIN
                             
0068116a   Ilyes Choubani   General update + ...
568
569
                                cgoplot,(1/xx)[indzero],(((*(*!dustem_data).polext).values)[idx_filt])[indzero]/yy[indzero],psym=16,color='Dodger Blue',syms=0.8,noerase=1,pos=position
                                cgerrplot,(1/((*(*!dustem_data).polext).wav)(idx_filt))[indzero],((((*(*!dustem_data).polext).values)[idx_filt])[indzero]-rms[indzero])/yy[indzero],((((*(*!dustem_data).polext).values)[idx_filt])[indzero]+rms[indzero])/yy[indzero],color='Dodger Blue';,/overplot 
94c4dffa   Ilyes Choubani   update + fixes fo...
570
571
                            
                            ENDIF
18e4331f   Ilyes Choubani   general update (f...
572
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                        ENDIF
                            
                        
5f04fa07   Ilyes Choubani   general update
575
                    endif else begin ;The data points in the plot that remain unchanged ; UNNECESSARY BLOCK but needed to limit erros when calls are made with missing keywords.
18e4331f   Ilyes Choubani   general update (f...
576
                        
f2caf3f1   Ilyes Choubani   Debugging some er...
577
                        xtit=textoidl('1/\lambda (\mum^{-1})')
18e4331f   Ilyes Choubani   general update (f...
578
                        if !run_pol then xtit = ''
afde94a3   Ilyes Choubani   general update
579
                        cgplot,1/vectw,vectx,/xlog,/ys,xs=1,pos=position,noerase=1,xtickformat='(A1)',color='Black',xr=xr,xtit=xtit,yr=[0.0,2.0],yticks=2,ymino=2,xticklen=0.1,ytickformat='(F6.2)',charsize=1.0
18e4331f   Ilyes Choubani   general update (f...
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                        xyouts,pospltxt[0],pospltxt[1],textoidl('norm'),color=0,/normal,charsize=1.1
                    
                    endelse
                    
                
                endif else begin ; normal plot
                        
                    if keyword_set(refresh) then begin ;The data points in the plot are being refreshed
                        
                        ;Plotting of the spectra of the dust species
                        FOR i=0L,Ngrains-1 DO BEGIN
07372e26   Ilyes Choubani   Corrected huge pl...
591
592
                            vecto = transpose(((st.polext.(1))[i,*]+(st.polext.(2))[i,*]))
                            cgoplot,1/st.polext.wav,vecto*(*!dustem_HCD)/1.0e21,color=use_cols[i],pos=position,noerase=1
18e4331f   Ilyes Choubani   general update (f...
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                        ENDFOR
                        
                        ;stop
                                                
                        ;Plotting of the plugins.
                        for i=0L,n_plgns-1 do begin
3c479f24   Ilyes Choubani   Allowing to fix p...
599
                            If isa((*!dustem_plugin).(0).spec) then begin
67bd858a   Ilyes Choubani   Replication of th...
600
                                IF total(strsplit((*(*!dustem_plugin).(i).scope),'+',/extract) EQ 'ADD_POLEXT') THEN begin
afde94a3   Ilyes Choubani   general update
601
                                    cgoplot,1/st.polext.wav,sqrt(((*(*!dustem_plugin).(i).spec)[*,1])^2+((*(*!dustem_plugin).(i).spec)[*,2])^2),color=clrs_plgns[i],pos=position,noerase=1,linestyle=2               
3c479f24   Ilyes Choubani   Allowing to fix p...
602
603
                                ENDIF 
                            endif
18e4331f   Ilyes Choubani   general update (f...
604
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                        endfor
                                                
                        ;PLotting of the interpolates corresponding to spectrum and filter points
                           
                        IF ct_spec NE 0 THEN BEGIN
                        
0068116a   Ilyes Choubani   General update + ...
610
                            xx=((*(*!dustem_data).polext).wav)[idx_spec]
5f04fa07   Ilyes Choubani   general update
611
                            yy=dustem_interp[idx_spec]
afde94a3   Ilyes Choubani   general update
612
                            cgoplot,1/xx,yy,color='Indian Red',pos=position,psym=7,syms=2,noerase=1   
18e4331f   Ilyes Choubani   general update (f...
613
614
615
616
                        ENDIF
                        
                        
                        IF ct_filt NE 0 THEN BEGIN
0068116a   Ilyes Choubani   General update + ...
617
                            xx=((*(*!dustem_data).polext).wav)[idx_filt]
5f04fa07   Ilyes Choubani   general update
618
                            yy=dustem_interp[idx_filt]
afde94a3   Ilyes Choubani   general update
619
                            cgoplot,1/xx,yy,color='red',pos=position,psym=6,syms=2,noerase=1
18e4331f   Ilyes Choubani   general update (f...
620
621
622
                        ENDIF
                        
                        ;Plotting of the total dust emission spectru
afde94a3   Ilyes Choubani   general update
623
                        cgoplot,1/st.polext.wav,dustem_spec,pos=position,noerase=1,/xlog,/ys,/xs,/ylog
5f04fa07   Ilyes Choubani   general update
624
                        ;cgoplot,st.polsed.wav,st.polsed.em_tot*fact,pos=position,noerase=1,/xlog,/ys,/xs,/ylog
18e4331f   Ilyes Choubani   general update (f...
625
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629
630
631
632
                                        
                                
                    endif else begin ;The data points in the plot that remain unchanged.
                        
                        ;Spectrum points are treated before for plotting reasons. 
                        if ct_spec ne 0 then begin 
                            
                            ;Plotting of spectrum data points (to be fitted)
0068116a   Ilyes Choubani   General update + ...
633
                            cgplot,1/((*(*!dustem_data).polext).wav)(idx_spec),((*(*!dustem_data).polext).values)(idx_spec),/ylog,/xlog,/ys,xs=9,pos=position,noerase=1,xtit=' ',charsize=1.15,xtickformat='(A1)',color='Powder Blue',xr=xr,yr=yr,psym=8,syms=0.8,ytickformat='dstmwrp_exp'                
18e4331f   Ilyes Choubani   general update (f...
634
635
                            
                            ;Plotting of the spectrum error points
0068116a   Ilyes Choubani   General update + ...
636
637
                            rms=3.*((*(*!dustem_data).polext).sigma)(idx_spec)/2.
                            cgerrplot,1/((*(*!dustem_data).polext).wav)(idx_spec),((*(*!dustem_data).polext).values)(idx_spec)-rms,((*(*!dustem_data).polext).values)(idx_spec)+rms,color='Powder Blue'
18e4331f   Ilyes Choubani   general update (f...
638
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640
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643

                        endif
                        
                        if ct_filt ne 0 then begin
                            plotsym,0,/fill
                            ;Plotting of filter data points (to be fitted) + testing for prior plotting                         
0068116a   Ilyes Choubani   General update + ...
644
645
                            if ct_spec ne 0 then cgoplot,1/((*(*!dustem_data).polext).wav)(idx_filt),((*(*!dustem_data).polext).values)(idx_filt),charsize=1.15,color='Dodger Blue',psym=8,syms=0.8,pos=position,/ys,xs=9,noerase=1,xtickformat='(A1)',xr=xr,yr=yr,ytickformat='dstmwrp_exp',/ylog,/xlog else $
                                cgplot,1/((*(*!dustem_data).polext).wav)(idx_filt),((*(*!dustem_data).polext).values)(idx_filt),charsize=1.15,color='Dodger Blue',psym=8,syms=0.8,pos=position,/ys,xs=9,noerase=1,xtickformat='(A1)',xtit=' ',xr=xr,yr=yr,ytickformat='dstmwrp_exp',/ylog,/xlog
18e4331f   Ilyes Choubani   general update (f...
646
647
648
                            
                            
                            ;Plotting of the filter error points
0068116a   Ilyes Choubani   General update + ...
649
650
                            rms=3.*((*(*!dustem_data).polext).sigma)(idx_filt)/2.;/dustem_polsed(idx_filt)
                            cgerrplot,1/((*(*!dustem_data).polext).wav)(idx_filt),((*(*!dustem_data).polext).values)(idx_filt)-rms,((*(*!dustem_data).polext).values)(idx_filt)+rms,color='Dodger Blue'
18e4331f   Ilyes Choubani   general update (f...
651
652
653
654
655
                            
                        endif
                        
                        
                        ;Plotting of frequency axis
e00f3269   Ilyes Choubani   corrected small e...
656
                        axis, xaxis=1, xlog=1, xs=1, xminor=10, xticklen=0.05, xrange=((!const.c*1E6*xr)*1E-9),charsize=1.15,xtitle=textoidl('\nu (GHz)'),color=0
18e4331f   Ilyes Choubani   general update (f...
657
                        
94c4dffa   Ilyes Choubani   update + fixes fo...
658
                        xyouts,pospltxt[0],pospltxt[1],textoidl('\tau_{PEXT}'),color=0,/normal,charsize=1.3;,charthick=2.0
18e4331f   Ilyes Choubani   general update (f...
659
660
                         
                        ;Locating all the hidden data points (spectrum+filter)
0068116a   Ilyes Choubani   General update + ...
661
                        match2,((*(*!dustem_data).polext).wav),((*(*!dustem_show).polext).wav),show_polsedpts,fit_polsedpts ;only show_polsedpts is needed
74103816   Ilyes Choubani   small update
662
                        idx_rmv_polsed=where(fit_polsedpts eq -1, ct_hdnpts) ; indices of the points to hide  - not renaming this and keeping the polsed notation
2df3360b   Ilyes Choubani   Correcting error:...
663
                        ;Locating the hidden spectrum and filter data points                                        
0068116a   Ilyes Choubani   General update + ...
664
665
                        idx_filt_hdn = where((((*(*!dustem_show).polext).filt_names))(idx_rmv_polsed) NE 'SPECTRUM',ct_filt_hdn)
                        idx_spec_hdn = where(((*(*!dustem_show).polext).filt_names)(idx_rmv_polsed) EQ 'SPECTRUM',ct_spec_hdn)
2df3360b   Ilyes Choubani   Correcting error:...
666
                        
1355825c   Ilyes Choubani   General update
667
                        ;stop
18e4331f   Ilyes Choubani   general update (f...
668
669
                        if ct_hdnpts ne 0 then begin ;Hidden data points are present 
                            ;stop
18e4331f   Ilyes Choubani   general update (f...
670
671
672
                            
                            if ct_spec_hdn ne 0 then begin
                                ;Plotting of hidden spectrum data points
0068116a   Ilyes Choubani   General update + ...
673
                                cgoplot,1/(((*(*!dustem_show).polext).wav)[idx_rmv_polsed])(idx_spec_hdn),(((*(*!dustem_show).polext).values)[idx_rmv_polsed])(idx_spec_hdn),pos=position,/ylog,/xlog,/ys,xs=9,noerase=1,charsize=1.15,xtickformat='(A1)',color='Black',xr=xr,yr=yr,psym=8,syms=0.8
18e4331f   Ilyes Choubani   general update (f...
674
675
                                
                                ;Plotting of hidden spectrum error points
0068116a   Ilyes Choubani   General update + ...
676
677
                                rms=3.*(((*(*!dustem_show).polext).sigma)[idx_rmv_polsed])(idx_spec_hdn)/2.
                                cgerrplot,1/(((*(*!dustem_show).polext).wav)[idx_rmv_polsed])(idx_spec_hdn),(((*(*!dustem_show).polext).values)[idx_rmv_polsed])(idx_spec_hdn)-rms,(((*(*!dustem_show).polext).values)[idx_rmv_polsed])(idx_spec_hdn)+rms,color='Black'
18e4331f   Ilyes Choubani   general update (f...
678
679
                            endif                                            
                            
1355825c   Ilyes Choubani   General update
680
                            if ct_filt_hdn ne 0 then begin
18e4331f   Ilyes Choubani   general update (f...
681
                            ;Plotting of hidden filter data points 
0068116a   Ilyes Choubani   General update + ...
682
                                cgoplot,1/(((*(*!dustem_show).polext).wav)[idx_rmv_polsed])(idx_filt_hdn),(((*(*!dustem_show).polext).values)[idx_rmv_polsed])(idx_filt_hdn),pos=position,/ylog,/xlog,/ys,xs=9,noerase=1,charsize=1.15,xtickformat='(A1)',color='Black',xr=xr,yr=yr,psym=8,syms=0.8                                           
18e4331f   Ilyes Choubani   general update (f...
683
684
                                
                                ;Plotting of hidden filter error point
0068116a   Ilyes Choubani   General update + ...
685
686
                                rms=3.*(((*(*!dustem_show).polext).sigma)[idx_rmv_polsed])(idx_filt_hdn)/2.
                                cgerrplot,1/(((*(*!dustem_show).polext).wav)[idx_rmv_polsed])(idx_filt_hdn),(((*(*!dustem_show).polext).values)[idx_rmv_polsed])(idx_filt_hdn)-rms,(((*(*!dustem_show).polext).values)[idx_rmv_polsed])(idx_filt_hdn)+rms,color='Black'
18e4331f   Ilyes Choubani   general update (f...
687
688
689
690
691
692
693
694
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700
701
                                
                            endif
                                                           
                        endif    
                        
                        
                    
                    endelse 
                
                
                
                endelse 
            
            endelse
        
67bd858a   Ilyes Choubani   Replication of th...
702
        
b5314324   Ilyes Choubani   updating the plot...
703
704
        end
        
67bd858a   Ilyes Choubani   Replication of th...
705
        'POLSED': begin 
1bc09467   Ilyes Choubani   fixed issue with ...
706
            
4b745987   Ilyes Choubani   minor update
707
708
709
710
711
            IF ct_m NE 0 then begin
                xr=xr_m 
                yr=yr_m
                
            ENDIF
1bc09467   Ilyes Choubani   fixed issue with ...
712
713
714
715
            vectw=DINDGEN(1001)*(alog10(1E7) - alog10(1E5))/(1000 - 1L) + alog10(1E5)
            vectw=10^vectw[1:*]
            vectw=[wavs,vectw]
            vectx=vectw*0+1
67bd858a   Ilyes Choubani   Replication of th...
716
            
0068116a   Ilyes Choubani   General update + ...
717
718
            idx_filt=where((*(*!dustem_data).polsed).filt_names NE 'SPECTRUM',ct_filt)
            idx_spec=where((*(*!dustem_data).polsed).filt_names EQ 'SPECTRUM',ct_spec)
1355825c   Ilyes Choubani   General update
719
720
721
722
723
            
            ;#1) get the plotting keywords (pertaining to each data set) @here when the _extra structure is ready
            
            if keyword_set(nodata) then begin ;when the data is not present
            
67bd858a   Ilyes Choubani   Replication of th...
724
725
726
727
                if keyword_set(norm) then begin ;normalized plot
                    
                    xtit=textoidl('\lambda (\mum)')
                    if !run_pol then xtit = ''
1bc09467   Ilyes Choubani   fixed issue with ...
728
                    cgplot,vectw,vectx,/xlog,/ys,xs=1,pos=position,noerase=1,xtickformat='(A1)',color='Black',xr=xr,xtit=xtit,yr=[0.0,2.0],yticks=2,ymino=2,xticklen=0.1,ytickformat='(F6.2)',charsize=1.0
67bd858a   Ilyes Choubani   Replication of th...
729
730
731
732
733
                    xyouts,pospltxt[0],pospltxt[1],textoidl('norm'),color=0,/normal,charsize=1.1                        
                
                endif else begin ;normal plot
                    
                    cgplot,wavs,wavs,/nodata,/ylog,/xlog,/ys,xs=9,pos=position,noerase=1,charsize=1.15,xtickformat='(A1)',color='Powder Blue',xr=xr,xtit='',yr=yr,psym=8,syms=0.8  
c0df0660   Ilyes Choubani   replaced all call...
734
                    axis, xaxis=1 ,xlog=1 ,xrange=((!const.c*1E6/xr)*1E-9),charsize=1.15,xtitle=textoidl('\nu (GHz)'),xticklen=0.05,xminor=10,color='black'
67bd858a   Ilyes Choubani   Replication of th...
735
736
737
738
739
740
741
742
743
744
                    xyouts,pospltxt[0],pospltxt[1],textoidl('P_{\nu} (MJy/sr)'),color=0,/normal,charsize=1.3;,charthick=2.0
                  
                endelse  
                
            
            endif else begin ;when the data is present 
            
                if keyword_set(norm) then begin 
                    
                    if keyword_set(refresh) then begin ;The data points in the plot that are being refreshed 
1355825c   Ilyes Choubani   General update
745
                        
67bd858a   Ilyes Choubani   Replication of th...
746
                        IF ct_spec NE 0 THEN BEGIN
0068116a   Ilyes Choubani   General update + ...
747
                            xx=((*(*!dustem_data).polsed).wav)[idx_spec]
67bd858a   Ilyes Choubani   Replication of th...
748
                            yy=dustem_interp[idx_spec]
0068116a   Ilyes Choubani   General update + ...
749
                            rms=3.*((*(*!dustem_data).polsed).sigma)(idx_spec)/2.
94c4dffa   Ilyes Choubani   update + fixes fo...
750
751
                            indzero = where(yy NE 0, ct_zero)
                            IF ct_zero NE 0 THEN BEGIN
0068116a   Ilyes Choubani   General update + ...
752
753
                                cgoplot,xx[indzero],(((*(*!dustem_data).polsed).values)[idx_spec])[indzero]/yy[indzero],color='Powder Blue',psym=16,syms=0.8,noerase=1,pos=position
                                cgerrplot,(((*(*!dustem_data).polsed).wav)(idx_spec))[indzero],((((*(*!dustem_data).polsed).values)[idx_spec])[indzero]-rms[indzero])/yy[indzero],((((*(*!dustem_data).polsed).values)[idx_spec])[indzero]+rms[indzero])/yy[indzero],color='Powder Blue'
94c4dffa   Ilyes Choubani   update + fixes fo...
754
                            ENDIF
67bd858a   Ilyes Choubani   Replication of th...
755
                        ENDIF
1355825c   Ilyes Choubani   General update
756
                        
67bd858a   Ilyes Choubani   Replication of th...
757
                        IF ct_filt NE 0 THEN BEGIN
0068116a   Ilyes Choubani   General update + ...
758
                            xx=((*(*!dustem_data).polsed).wav)[idx_filt]
67bd858a   Ilyes Choubani   Replication of th...
759
                            yy=dustem_interp[idx_filt]
0068116a   Ilyes Choubani   General update + ...
760
                            rms=3.*((*(*!dustem_data).polsed).sigma)(idx_filt)/2.
94c4dffa   Ilyes Choubani   update + fixes fo...
761
762
                            indzero = where(yy NE 0, ct_zero)
                            IF ct_zero NE 0 THEN BEGIN 
0068116a   Ilyes Choubani   General update + ...
763
764
                                cgoplot,xx[indzero],(((*(*!dustem_data).polsed).values)[idx_filt])[indzero]/yy[indzero],psym=16,color='Dodger Blue',syms=0.8,noerase=1,pos=position
                                cgerrplot,(((*(*!dustem_data).polsed).wav)(idx_filt))[indzero],((((*(*!dustem_data).polsed).values)[idx_filt])[indzero]-rms[indzero])/yy[indzero],((((*(*!dustem_data).polsed).values)[idx_filt])[indzero]+rms[indzero])/yy[indzero],color='Dodger Blue';,/overplot 
94c4dffa   Ilyes Choubani   update + fixes fo...
765
                            ENDIF
67bd858a   Ilyes Choubani   Replication of th...
766
767
                        ENDIF
                            
1355825c   Ilyes Choubani   General update
768
                        
67bd858a   Ilyes Choubani   Replication of th...
769
                    endif else begin ;The data points in the plot that remain unchanged ; UNNECESSARY BLOCK but needed to limit erros when calls are made with missing keywords.
1bc09467   Ilyes Choubani   fixed issue with ...
770
                        
67bd858a   Ilyes Choubani   Replication of th...
771
772
                        xtit=textoidl('\lambda (\mum)')
                        if !run_pol then xtit = ''
afde94a3   Ilyes Choubani   general update
773
                        cgplot,vectw,vectx,/xlog,/ys,xs=1,pos=position,noerase=1,xtickformat='(A1)',color='Black',xr=xr,xtit=xtit,yr=[0.0,2.0],yticks=2,ymino=2,xticklen=0.1,ytickformat='(F6.2)',charsize=1.0
67bd858a   Ilyes Choubani   Replication of th...
774
775
776
777
778
779
                        xyouts,pospltxt[0],pospltxt[1],textoidl('norm'),color=0,/normal,charsize=1.1
                    
                    endelse
                    
                
                endif else begin ; normal plot
1355825c   Ilyes Choubani   General update
780
                        
67bd858a   Ilyes Choubani   Replication of th...
781
782
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                    if keyword_set(refresh) then begin ;The data points in the plot are being refreshed
                        
                        ;Plotting of the spectra of the dust species
                        FOR i=0L,Ngrains-1 DO BEGIN
                            cgoplot,st.polsed.wav,st.polsed.(i+1)*fact,color=use_cols[i],pos=position,noerase=1
                        ENDFOR
                        
                        ;stop
                                                
                        ;Plotting of the plugins.
                        for i=0L,n_plgns-1 do begin
                            If isa((*!dustem_plugin).(0).spec) then begin
                                IF total(strsplit((*(*!dustem_plugin).(i).scope),'+',/extract) EQ 'ADD_POLSED') THEN begin
                                    cgoplot,st.polsed.wav,sqrt(((*(*!dustem_plugin).(i).spec)[*,1])^2+((*(*!dustem_plugin).(i).spec)[*,2])^2),color=clrs_plgns[i],pos=position,noerase=1,linestyle=2               
                                ENDIF 
                            endif
                        endfor
                                                
                        ;PLotting of the interpolates corresponding to spectrum and filter points
                           
                        IF ct_spec NE 0 THEN BEGIN
                        
0068116a   Ilyes Choubani   General update + ...
803
                            xx=((*(*!dustem_data).polsed).wav)[idx_spec]
67bd858a   Ilyes Choubani   Replication of th...
804
805
806
807
808
809
                            yy=dustem_interp[idx_spec]
                            cgoplot,xx,yy,color='Indian Red',pos=position,psym=7,syms=2,noerase=1   
                        ENDIF
                        
                        
                        IF ct_filt NE 0 THEN BEGIN
0068116a   Ilyes Choubani   General update + ...
810
                            xx=((*(*!dustem_data).polsed).wav)[idx_filt]
67bd858a   Ilyes Choubani   Replication of th...
811
812
813
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815
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817
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819
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821
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823
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                            yy=dustem_interp[idx_filt]
                            cgoplot,xx,yy,color='red',pos=position,psym=6,syms=2,noerase=1
                        ENDIF
                        
                        ;Plotting of the total dust emission spectru
                        cgoplot,st.polsed.wav,dustem_spec,pos=position,noerase=1,/xlog,/ys,/xs,/ylog
                        ;cgoplot,st.polsed.wav,st.polsed.em_tot*fact,pos=position,noerase=1,/xlog,/ys,/xs,/ylog
                                        
                                
                    endif else begin ;The data points in the plot that remain unchanged.
                        
                        ;Spectrum points are treated before for plotting reasons. 
                        if ct_spec ne 0 then begin 
                            
                            ;Plotting of spectrum data points (to be fitted)
0068116a   Ilyes Choubani   General update + ...
826
                            cgplot,((*(*!dustem_data).polsed).wav)(idx_spec),((*(*!dustem_data).polsed).values)(idx_spec),/ylog,/xlog,/ys,xs=9,pos=position,noerase=1,xtit=' ',charsize=1.15,xtickformat='(A1)',color='Powder Blue',xr=xr,yr=yr,psym=8,syms=0.8,ytickformat='dstmwrp_exp'                
67bd858a   Ilyes Choubani   Replication of th...
827
828
                            
                            ;Plotting of the spectrum error points
0068116a   Ilyes Choubani   General update + ...
829
830
                            rms=3.*((*(*!dustem_data).polsed).sigma)(idx_spec)/2.
                            cgerrplot,((*(*!dustem_data).polsed).wav)(idx_spec),((*(*!dustem_data).polsed).values)(idx_spec)-rms,((*(*!dustem_data).polsed).values)(idx_spec)+rms,color='Powder Blue'
67bd858a   Ilyes Choubani   Replication of th...
831
832
833
834
835
836

                        endif
                        
                        if ct_filt ne 0 then begin
                            plotsym,0,/fill
                            ;Plotting of filter data points (to be fitted) + testing for prior plotting                         
0068116a   Ilyes Choubani   General update + ...
837
838
                            if ct_spec ne 0 then cgoplot,((*(*!dustem_data).polsed).wav)(idx_filt),((*(*!dustem_data).polsed).values)(idx_filt),charsize=1.15,color='Dodger Blue',psym=8,syms=0.8,pos=position,/ys,xs=9,noerase=1,xtickformat='(A1)',xr=xr,yr=yr,ytickformat='dstmwrp_exp',/ylog,/xlog else $
                                cgplot,((*(*!dustem_data).polsed).wav)(idx_filt),((*(*!dustem_data).polsed).values)(idx_filt),charsize=1.15,color='Dodger Blue',psym=8,syms=0.8,pos=position,/ys,xs=9,noerase=1,xtickformat='(A1)',xtit=' ',xr=xr,yr=yr,ytickformat='dstmwrp_exp',/ylog,/xlog
67bd858a   Ilyes Choubani   Replication of th...
839
840
841
                            
                            
                            ;Plotting of the filter error points
0068116a   Ilyes Choubani   General update + ...
842
843
                            rms=3.*((*(*!dustem_data).polsed).sigma)(idx_filt)/2.;/dustem_polsed(idx_filt)
                            cgerrplot,((*(*!dustem_data).polsed).wav)(idx_filt),((*(*!dustem_data).polsed).values)(idx_filt)-rms,((*(*!dustem_data).polsed).values)(idx_filt)+rms,color='Dodger Blue'
67bd858a   Ilyes Choubani   Replication of th...
844
845
846
847
848
                            
                        endif
                        
                        
                        ;Plotting of frequency axis
e00f3269   Ilyes Choubani   corrected small e...
849
                        axis, xaxis=1, xlog=1, xs=1, xminor=10, xticklen=0.05, xrange=((!const.c*1E6/(xr))*1E-9),charsize=1.15,xtitle=textoidl('\nu (GHz)'),color=0
67bd858a   Ilyes Choubani   Replication of th...
850
851
852
853
                        
                        xyouts,pospltxt[0],pospltxt[1],textoidl('P_{\nu} (MJy/sr)'),color=0,/normal,charsize=1.3;,charthick=2.0
                         
                        ;Locating all the hidden data points (spectrum+filter)
0068116a   Ilyes Choubani   General update + ...
854
                        match2,((*(*!dustem_data).polsed).wav),((*(*!dustem_show).polsed).wav),show_polsedpts,fit_polsedpts ;only show_polsedpts is needed
74103816   Ilyes Choubani   small update
855
                        idx_rmv_polsed=where(fit_polsedpts eq -1, ct_hdnpts) ; indices of the points to hide
67bd858a   Ilyes Choubani   Replication of th...
856
                        ;Locating the hidden spectrum and filter data points                                        
0068116a   Ilyes Choubani   General update + ...
857
858
                        idx_filt_hdn = where((((*(*!dustem_show).polsed).filt_names))(idx_rmv_polsed) NE 'SPECTRUM',ct_filt_hdn)
                        idx_spec_hdn = where(((*(*!dustem_show).polsed).filt_names)(idx_rmv_polsed) EQ 'SPECTRUM',ct_spec_hdn)
67bd858a   Ilyes Choubani   Replication of th...
859
860
861
862
863
864
865
                        
                        ;stop
                        if ct_hdnpts ne 0 then begin ;Hidden data points are present 
                            ;stop
                            
                            if ct_spec_hdn ne 0 then begin
                                ;Plotting of hidden spectrum data points
0068116a   Ilyes Choubani   General update + ...
866
                                cgoplot,(((*(*!dustem_show).polsed).wav)[idx_rmv_polsed])(idx_spec_hdn),(((*(*!dustem_show).polsed).values)[idx_rmv_polsed])(idx_spec_hdn),pos=position,/ylog,/xlog,/ys,xs=9,noerase=1,charsize=1.15,xtickformat='(A1)',color='Black',xr=xr,yr=yr,psym=8,syms=0.8
67bd858a   Ilyes Choubani   Replication of th...
867
868
                                
                                ;Plotting of hidden spectrum error points
0068116a   Ilyes Choubani   General update + ...
869
870
                                rms=3.*(((*(*!dustem_show).polsed).sigma)[idx_rmv_polsed])(idx_spec_hdn)/2.
                                cgerrplot,(((*(*!dustem_show).polsed).wav)[idx_rmv_polsed])(idx_spec_hdn),(((*(*!dustem_show).polsed).values)[idx_rmv_polsed])(idx_spec_hdn)-rms,(((*(*!dustem_show).polsed).values)[idx_rmv_polsed])(idx_spec_hdn)+rms,color='Black'
67bd858a   Ilyes Choubani   Replication of th...
871
872
873
874
                            endif                                            
                            
                            if ct_filt_hdn ne 0 then begin
                            ;Plotting of hidden filter data points 
0068116a   Ilyes Choubani   General update + ...
875
                                cgoplot,(((*(*!dustem_show).polsed).wav)[idx_rmv_polsed])(idx_filt_hdn),(((*(*!dustem_show).polsed).values)[idx_rmv_polsed])(idx_filt_hdn),pos=position,/ylog,/xlog,/ys,xs=9,noerase=1,charsize=1.15,xtickformat='(A1)',color='Black',xr=xr,yr=yr,psym=8,syms=0.8                                           
67bd858a   Ilyes Choubani   Replication of th...
876
877
                                
                                ;Plotting of hidden filter error point
0068116a   Ilyes Choubani   General update + ...
878
879
                                rms=3.*(((*(*!dustem_show).polsed).sigma)[idx_rmv_polsed])(idx_filt_hdn)/2.
                                cgerrplot,(((*(*!dustem_show).polsed).wav)[idx_rmv_polsed])(idx_filt_hdn),(((*(*!dustem_show).polsed).values)[idx_rmv_polsed])(idx_filt_hdn)-rms,(((*(*!dustem_show).polsed).values)[idx_rmv_polsed])(idx_filt_hdn)+rms,color='Black'
67bd858a   Ilyes Choubani   Replication of th...
880
881
882
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884
885
886
887
888
889
890
891
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893
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895
896
897
                                
                            endif
                                                           
                        endif    
                        
                        
                    
                    endelse 
                
                
                
                endelse 
            
            endelse
        
        end
        
        'POLFRAC': begin 
96a72c8b   Ilyes Choubani   seperating xrange...
898
            
4b745987   Ilyes Choubani   minor update
899
900
901
902
903
            IF ct_m NE 0 then begin
                xr=xr_m
                yr=yr_m
                
            ENDIF
0068116a   Ilyes Choubani   General update + ...
904
905
            idx_filt=where((*(*!dustem_data).polfrac).filt_names NE 'SPECTRUM',ct_filt)
            idx_spec=where((*(*!dustem_data).polfrac).filt_names EQ 'SPECTRUM',ct_spec)
67bd858a   Ilyes Choubani   Replication of th...
906
907
908
909
910
911
            
            
            if keyword_set(nodata) then begin ;when the data is not present
            
                    xtit = ''
                    cgplot,wavs,wavs*0.,/nodata,/xlog,/ys,xs=1,pos=position,noerase=1,charsize=1.15,xtickformat='(A1)',color='Powder Blue',xr=xr,xtit='',yr=[1.00E-04,50.00],/ylog,psym=8,syms=0.8  
07372e26   Ilyes Choubani   Corrected huge pl...
912
                    xyouts,pospltxt[0],pospltxt[1],textoidl('p (%)'),color=0,/normal,charsize=1.3;,charthick=2.0
67bd858a   Ilyes Choubani   Replication of th...
913
914
915
916
                 
            endif else begin ;when the data is present ; normal plot     
                        
                    if keyword_set(refresh) then begin ;The data points in the plot are being refreshed
8fbdb4c3   Ilyes Choubani   Fixed minor 0/0 e...
917
                          
67bd858a   Ilyes Choubani   Replication of th...
918
                        FOR i=0L,Ngrains-1 DO BEGIN
1355825c   Ilyes Choubani   General update
919
                            
5f04fa07   Ilyes Choubani   general update
920
                            testneq = where(st.polsed.(i+1) ne 0,countneq)
1355825c   Ilyes Choubani   General update
921
                            
5f04fa07   Ilyes Choubani   general update
922
923
924
                            if countneq ne 0 then begin 
                                vecfin = st.polsed.(i+1)*0.0
                                
07372e26   Ilyes Choubani   Corrected huge pl...
925
926
                                vecfin[testneq] = ((st.polsed.(i+1))[testneq])*fact[testneq]/extra_spec[testneq];(st.sed.em_tot)[testneq];;(st.sed.em_tot)[testneq];spec[testneq];(st.sed.(i+1))[testneq];*fact;(st.sed.(i+1))[testneq]
                                
5f04fa07   Ilyes Choubani   general update
927
928
                                cgoplot,st.polsed.wav,vecfin*100,pos=position,noerase=1,color=use_cols[i],xr=xr,/xlog,/ylog,ytickformat='(A1)',yr=[1.00E-04,50.00]
                            endif   
1355825c   Ilyes Choubani   General update
929
930
931
                        ENDFOR
                       
                        ;Plotting of the plugins. 
5f04fa07   Ilyes Choubani   general update
932
                         
1355825c   Ilyes Choubani   General update
933
                        for i=0L,n_plgns-1 do begin
5f04fa07   Ilyes Choubani   general update
934
                            
3c479f24   Ilyes Choubani   Allowing to fix p...
935
936
937
938
939
940
941
942
943
                            if isa((*!dustem_plugin).(0).spec) then begin
                            
                                IF total(strsplit((*(*!dustem_plugin).(i).scope),'+',/extract) EQ 'ADD_POLSED') THEN begin
                                    vecfin = st.polsed.em_tot*0.0
                                    vecfin[testneq] = sqrt((((*(*!dustem_plugin).(i).spec)[*,1])^2)[testneq]+(((*(*!dustem_plugin).(i).spec)[*,2])^2)[testneq])/((*(*!dustem_plugin).(i).spec)[*,0])[testneq]        
                                    cgoplot,st.polsed.wav,vecfin*100,color=clrs_plgns[i],pos=position,noerase=1,linestyle=2               
                                
                                ENDIF
                            endif
1355825c   Ilyes Choubani   General update
944
                            
1355825c   Ilyes Choubani   General update
945
946
                        endfor
                       
5f04fa07   Ilyes Choubani   general update
947
948
                       ;STOPPED HERE. CHECK QSED NOW. MOVING ON NOW. 
                       
1355825c   Ilyes Choubani   General update
949
950
951
952
953
                        
                         ;PLotting of the interpolates corresponding to spectrum and filter points
                        
                         IF ct_spec NE 0 THEN BEGIN
                         
0068116a   Ilyes Choubani   General update + ...
954
                             xx=((*(*!dustem_data).polfrac).wav)[idx_spec]
5f04fa07   Ilyes Choubani   general update
955
                             yy=dustem_interp[idx_spec]
fcb6eade   Ilyes Choubani   general update - ...
956
                             cgoplot,xx,yy*100,color='Indian Red',pos=position,psym=7,syms=2,noerase=1   
1355825c   Ilyes Choubani   General update
957
958
959
960
                         ENDIF
                         
                         
                         IF ct_filt NE 0 THEN BEGIN
0068116a   Ilyes Choubani   General update + ...
961
                             xx=((*(*!dustem_data).polfrac).wav)[idx_filt]
5f04fa07   Ilyes Choubani   general update
962
                             yy=dustem_interp[idx_filt]
1355825c   Ilyes Choubani   General update
963
964
965
966
967
                             cgoplot,xx,yy*100,color='red',pos=position,psym=6,syms=2,noerase=1
                         ENDIF
                         
                         
                         ;Plotting of the total dust emission spectrum
afde94a3   Ilyes Choubani   general update
968
                         cgoplot,st.polsed.wav,dustem_spec*100,pos=position,noerase=1,/xlog,/ys,/xs               
1355825c   Ilyes Choubani   General update
969
970
971
                                
                    endif else begin ;The data points in the plot that remain unchanged.
                        
8fbdb4c3   Ilyes Choubani   Fixed minor 0/0 e...
972

1355825c   Ilyes Choubani   General update
973
                        ;Spectrum points are treated before for plotting reasons. 
9cb38725   Ilyes Choubani   Fixed tests relat...
974
                        
1355825c   Ilyes Choubani   General update
975
976
977
                        if ct_spec ne 0 then begin 
                            
                            ;Plotting of spectrum data points (to be fitted)
0068116a   Ilyes Choubani   General update + ...
978
                            cgplot,((*(*!dustem_data).polfrac).wav)(idx_spec),((*(*!dustem_data).polfrac).values)(idx_spec)*100,/xlog,/ylog,/ys,xs=1,pos=position,noerase=1,xtit=' ',charsize=1.15,xtickformat='(A1)',color='Powder Blue',xr=xr,yr=[1.00E-04,50.00],psym=16,syms=0.8;,ytickformat='dstmwrp_exp'                
1355825c   Ilyes Choubani   General update
979
980
                            
                            ;Plotting of the spectrum error points
0068116a   Ilyes Choubani   General update + ...
981
982
                            rms=3.*((*(*!dustem_data).polfrac).sigma)(idx_spec)/2.
                            cgerrplot,((*(*!dustem_data).polfrac).wav)(idx_spec),(((*(*!dustem_data).polfrac).values)(idx_spec)-rms)*100,(((*(*!dustem_data).polfrac).values)(idx_spec)+rms)*100,color='Powder Blue'
1355825c   Ilyes Choubani   General update
983
984
985
986
987
988

                        endif
                        
                        if ct_filt ne 0 then begin
                        
                            ;Plotting of filter data points (to be fitted) + testing for prior plotting                         
0068116a   Ilyes Choubani   General update + ...
989
990
                            if ct_spec ne 0 then cgoplot,((*(*!dustem_data).polfrac).wav)(idx_filt),((*(*!dustem_data).polfrac).values)(idx_filt)*100,charsize=1.15,color='Dodger Blue',psym=16,syms=0.8,pos=position,/ys,xs=1,noerase=1,xtickformat='(A1)',xr=xr,yr=[1.00E-04,50.00],/xlog,/ylog else $;,ytickformat='dstmwrp_exp'
                                cgplot,((*(*!dustem_data).polfrac).wav)(idx_filt),((*(*!dustem_data).polfrac).values)(idx_filt)*100,charsize=1.15,color='Dodger Blue',psym=16,syms=0.8,pos=position,/ys,xs=1,noerase=1,xtickformat='(A1)',xtit=' ',xr=xr,yr=[1.00E-04,50.00],/xlog,/ylog;,ytickformat='dstmwrp_exp'
1355825c   Ilyes Choubani   General update
991
992
993
                            
                            
                            ;Plotting of the filter error points
0068116a   Ilyes Choubani   General update + ...
994
995
                            rms=3.*((*(*!dustem_data).polfrac).sigma)(idx_filt)/2.;/dustem_polfrac(idx_filt)
                            cgerrplot,((*(*!dustem_data).polfrac).wav)(idx_filt),(((*(*!dustem_data).polfrac).values)(idx_filt)-rms)*100,(((*(*!dustem_data).polfrac).values)(idx_filt)+rms)*100,color='Dodger Blue'
1355825c   Ilyes Choubani   General update
996
997
998
999
1000
                            
                        endif
                        
                        
                        
07372e26   Ilyes Choubani   Corrected huge pl...
1001
                        xyouts,pospltxt[0],pospltxt[1],textoidl('p (%)'),color=0,/normal,charsize=1.3;,charthick=2.0
1355825c   Ilyes Choubani   General update
1002
1003
1004
1005
                         
                        ;Locating all the hidden data points (spectrum+filter)
                        
                        ;The filtering has been done prior (in the primary routine)
0068116a   Ilyes Choubani   General update + ...
1006
                        match2,((*(*!dustem_data).polfrac).wav),((*(*!dustem_show).polfrac).wav),show_polfracpts,fit_polfracpts ;only show_polfracpts is needed
74103816   Ilyes Choubani   small update
1007
                        idx_rmv_polfrac=where(fit_polfracpts eq -1, ct_hdnpts) ; indices of the points to hide
1355825c   Ilyes Choubani   General update
1008
                        ;stop
2df3360b   Ilyes Choubani   Correcting error:...
1009
                        ;Locating the hidden spectrum and filter data points                                        
0068116a   Ilyes Choubani   General update + ...
1010
1011
                        idx_filt_hdn = where(((*(*!dustem_show).polfrac).filt_names)(idx_rmv_polfrac) NE 'SPECTRUM',ct_filt_hdn)
                        idx_spec_hdn = where(((*(*!dustem_show).polfrac).filt_names)(idx_rmv_polfrac) EQ 'SPECTRUM',ct_spec_hdn)
1355825c   Ilyes Choubani   General update
1012
1013
                        if ct_hdnpts ne 0 then begin ;Hidden data points are present 
                            ;stop
1355825c   Ilyes Choubani   General update
1014
1015
1016
                            
                            if ct_spec_hdn ne 0 then begin
                                ;Plotting of hidden spectrum data points
0068116a   Ilyes Choubani   General update + ...
1017
                                cgplot,(((*(*!dustem_show).polfrac).wav)[idx_rmv_polfrac])(idx_spec_hdn),(((*(*!dustem_show).polfrac).values)[idx_rmv_polfrac])(idx_spec_hdn)*100,pos=position,/xlog,/ylog,/ys,xs=1,noerase=1,charsize=1.15,xtickformat='(A1)',color='Black',xr=xr,yr=[1.00E-04,50.00],psym=8,syms=0.8
1355825c   Ilyes Choubani   General update
1018
1019
                                
                                ;Plotting of hidden spectrum error points
0068116a   Ilyes Choubani   General update + ...
1020
1021
                                rms=3.*(((*(*!dustem_show).polfrac).sigma)[idx_rmv_polfrac])(idx_spec_hdn)/2.
                                cgerrplot,(((*(*!dustem_show).polfrac).wav)[idx_rmv_polfrac])(idx_spec_hdn),((((*(*!dustem_show).polfrac).values)[idx_rmv_polfrac])(idx_spec_hdn)-rms)*100,((((*(*!dustem_show).polfrac).values)[idx_rmv_polfrac])(idx_spec_hdn)+rms)*100,color='Black'
1355825c   Ilyes Choubani   General update
1022
1023
1024
1025
1026
1027
                            endif                                           
                            
                            if ct_filt_hdn ne 0 then begin
                                ;stop
                                plotsym,0, /fill
                                ;Plotting of hidden filter data points 
0068116a   Ilyes Choubani   General update + ...
1028
                                cgplot,(((*(*!dustem_show).polfrac).wav)[idx_rmv_polfrac])(idx_filt_hdn),(((*(*!dustem_show).polfrac).values)[idx_rmv_polfrac])(idx_filt_hdn)*100,pos=position,/xlog,/ylog,/ys,xs=1,noerase=1,charsize=1.15,xtickformat='(A1)',color='Black',xr=xr,yr=[1.00E-04,50.00],psym=8,syms=0.8                                           
1355825c   Ilyes Choubani   General update
1029
1030
                                ;stop
                                ;Plotting of hidden filter error point
0068116a   Ilyes Choubani   General update + ...
1031
1032
                                rms=3.*(((*(*!dustem_show).polfrac).sigma)[idx_rmv_polfrac])(idx_filt_hdn)/2.
                                cgerrplot,(((*(*!dustem_show).polfrac).wav)[idx_rmv_polfrac])(idx_filt_hdn),((((*(*!dustem_show).polfrac).values)[idx_rmv_polfrac])(idx_filt_hdn)-rms)*100,((((*(*!dustem_show).polfrac).values)[idx_rmv_polfrac])(idx_filt_hdn)+rms)*100,color='Black'
1355825c   Ilyes Choubani   General update
1033
1034
1035
1036
1037
1038
1039
1040
1041
                                 
                            endif 
                                                           
                        endif 
                        
                    
                    endelse 
                
            endelse 
b5314324   Ilyes Choubani   updating the plot...
1042
1043
1044
        
        end
        
fdc0dcfe   Ilyes Choubani   adding forgotten ...
1045
        'FPOLEXT': BEGIN ; For completeness (not sure of the physical usefulness of this qauntity )
96a72c8b   Ilyes Choubani   seperating xrange...
1046
            
4b745987   Ilyes Choubani   minor update
1047
            IF ct_x NE 0 then begin
96a72c8b   Ilyes Choubani   seperating xrange...
1048
            
4b745987   Ilyes Choubani   minor update
1049
1050
1051
1052
                xr=xr_x
                yr=yr_x
                
            ENDIF
0068116a   Ilyes Choubani   General update + ...
1053
1054
            idx_filt=where((*(*!dustem_data).fpolext).filt_names NE 'SPECTRUM',ct_filt)
            idx_spec=where((*(*!dustem_data).fpolext).filt_names EQ 'SPECTRUM',ct_spec)
18e4331f   Ilyes Choubani   general update (f...
1055
            
18e4331f   Ilyes Choubani   general update (f...
1056
1057
1058
1059
            
            if keyword_set(nodata) then begin ;when the data is not present
            
                    xtit = ''
94c4dffa   Ilyes Choubani   update + fixes fo...
1060
1061
                    cgplot,wavs,wavs*0.,/nodata,/xlog,/ys,xs=1,pos=position,noerase=1,charsize=1.15,xtickformat='(A1)',color='Powder Blue',xr=xr,xtit='',yr=[1.00E-04,10.00],/ylog,psym=8,syms=0.8  
                    xyouts,pospltxt[0],pospltxt[1],textoidl('\tau_{PEXT}/\tau_{EXT} (%)'),color=0,/normal,charsize=1.3;,charthick=2.0
18e4331f   Ilyes Choubani   general update (f...
1062
1063
1064
1065
1066
                 
            endif else begin ;when the data is present ; normal plot     
                        
                    if keyword_set(refresh) then begin ;The data points in the plot are being refreshed
                        
67bd858a   Ilyes Choubani   Replication of th...
1067
                        
18e4331f   Ilyes Choubani   general update (f...
1068
                        FOR i=0L,Ngrains-1 DO BEGIN
5f04fa07   Ilyes Choubani   general update
1069
                            
07372e26   Ilyes Choubani   Corrected huge pl...
1070
1071
1072
                            vecto = transpose((st.polext.(1))[i,*]+(st.polext.(2))[i,*])
                            
                            testneq = where(vecto ne 0,countneq)
67bd858a   Ilyes Choubani   Replication of th...
1073
1074
                            
                            if countneq ne 0 then begin 
07372e26   Ilyes Choubani   Corrected huge pl...
1075
                                vecfin = vecto*0.0
5f04fa07   Ilyes Choubani   general update
1076
                                
07372e26   Ilyes Choubani   Corrected huge pl...
1077
                                vecfin[testneq] = (vecto[testneq])*(*!dustem_HCD)/1.0e21/extra_spec[testneq];(st.sed.em_tot)[testneq];spec[testneq];(st.sed.(i+1))[testneq];*fact;(st.sed.(i+1))[testneq]
67bd858a   Ilyes Choubani   Replication of th...
1078
                                 
94c4dffa   Ilyes Choubani   update + fixes fo...
1079
                                cgoplot,1/st.polext.wav,vecfin*100,pos=position,noerase=1,color=use_cols[i],xr=xr,/xlog,/ylog,ytickformat='(A1)',yr=[1.00E-04,10.00]
67bd858a   Ilyes Choubani   Replication of th...
1080
                            endif   
18e4331f   Ilyes Choubani   general update (f...
1081
                        ENDFOR
67bd858a   Ilyes Choubani   Replication of th...
1082
1083
1084
                       
                        ;Plotting of the plugins. 
                         
18e4331f   Ilyes Choubani   general update (f...
1085
                        for i=0L,n_plgns-1 do begin
3c479f24   Ilyes Choubani   Allowing to fix p...
1086
1087
                            
                            if isa((*!dustem_plugin).(0).spec) then begin
67bd858a   Ilyes Choubani   Replication of th...
1088
1089
1090
1091
                            
                                IF total(strsplit((*(*!dustem_plugin).(i).scope),'+',/extract) EQ 'ADD_POLEXT') THEN begin
                                    vecfin = st.polext.ext_tot*0.0
                                    vecfin[testneq] = sqrt((((*(*!dustem_plugin).(i).spec)[*,1])^2)[testneq]+(((*(*!dustem_plugin).(i).spec)[*,2])^2)[testneq])/((*(*!dustem_plugin).(i).spec)[*,0])[testneq]        
afde94a3   Ilyes Choubani   general update
1092
                                    cgoplot,1/st.polext.wav,vecfin*100,color=clrs_plgns[i],pos=position,noerase=1,linestyle=2               
67bd858a   Ilyes Choubani   Replication of th...
1093
                                
3c479f24   Ilyes Choubani   Allowing to fix p...
1094
                                ENDIF
67bd858a   Ilyes Choubani   Replication of th...
1095
1096
                            endif
                            
18e4331f   Ilyes Choubani   general update (f...
1097
                        endfor
67bd858a   Ilyes Choubani   Replication of th...
1098
                       
67bd858a   Ilyes Choubani   Replication of th...
1099
                       
18e4331f   Ilyes Choubani   general update (f...
1100
1101
1102
1103
                         ;PLotting of the interpolates corresponding to spectrum and filter points
                        
                         IF ct_spec NE 0 THEN BEGIN
                         
0068116a   Ilyes Choubani   General update + ...
1104
                             xx=((*(*!dustem_data).fpolext).wav)[idx_spec]
5f04fa07   Ilyes Choubani   general update
1105
                             yy=dustem_interp[idx_spec]
afde94a3   Ilyes Choubani   general update
1106
                             cgoplot,1/xx,yy*100,color='Indian Red',pos=position,psym=7,syms=2,noerase=1   
18e4331f   Ilyes Choubani   general update (f...
1107
1108
1109
1110
                         ENDIF
                         
                         
                         IF ct_filt NE 0 THEN BEGIN
0068116a   Ilyes Choubani   General update + ...
1111
                             xx=((*(*!dustem_data).fpolext).wav)[idx_filt]
5f04fa07   Ilyes Choubani   general update
1112
                             yy=dustem_interp[idx_filt]
afde94a3   Ilyes Choubani   general update
1113
                             cgoplot,1/xx,yy*100,color='red',pos=position,psym=6,syms=2,noerase=1
18e4331f   Ilyes Choubani   general update (f...
1114
1115
1116
1117
                         ENDIF
                         
                         
                         ;Plotting of the total dust emission spectrum
afde94a3   Ilyes Choubani   general update
1118
                         cgoplot,1/st.polext.wav,dustem_spec*100,pos=position,noerase=1,/xlog,/ys,/xs
67bd858a   Ilyes Choubani   Replication of th...
1119
                                        
18e4331f   Ilyes Choubani   general update (f...
1120
1121
                                
                    endif else begin ;The data points in the plot that remain unchanged.
8fbdb4c3   Ilyes Choubani   Fixed minor 0/0 e...
1122
                         
18e4331f   Ilyes Choubani   general update (f...
1123
1124
                        
                        ;Spectrum points are treated before for plotting reasons. 
67bd858a   Ilyes Choubani   Replication of th...
1125
                        
18e4331f   Ilyes Choubani   general update (f...
1126
1127
1128
                        if ct_spec ne 0 then begin 
                            
                            ;Plotting of spectrum data points (to be fitted)
0068116a   Ilyes Choubani   General update + ...
1129
                            cgplot,1/((*(*!dustem_data).fpolext).wav)(idx_spec),((*(*!dustem_data).fpolext).values)(idx_spec)*100,/xlog,/ylog,/ys,xs=1,pos=position,noerase=1,xtit=' ',charsize=1.15,xtickformat='(A1)',color='Powder Blue',xr=xr,yr=[1.00E-04,10.00],psym=16,syms=0.8;,ytickformat='dstmwrp_exp'                
18e4331f   Ilyes Choubani   general update (f...
1130
1131
                            
                            ;Plotting of the spectrum error points
0068116a   Ilyes Choubani   General update + ...
1132
1133
                            rms=3.*((*(*!dustem_data).fpolext).sigma)(idx_spec)/2.
                            cgerrplot,1/((*(*!dustem_data).fpolext).wav)(idx_spec),(((*(*!dustem_data).fpolext).values)(idx_spec)-rms)*100,(((*(*!dustem_data).fpolext).values)(idx_spec)+rms)*100,color='Powder Blue'
18e4331f   Ilyes Choubani   general update (f...
1134
1135
1136
1137
1138
1139

                        endif
                        
                        if ct_filt ne 0 then begin
                        
                            ;Plotting of filter data points (to be fitted) + testing for prior plotting                         
0068116a   Ilyes Choubani   General update + ...
1140
1141
                            if ct_spec ne 0 then cgoplot,1/((*(*!dustem_data).fpolext).wav)(idx_filt),((*(*!dustem_data).fpolext).values)(idx_filt)*100,charsize=1.15,color='Dodger Blue',psym=16,syms=0.8,pos=position,/ys,xs=1,noerase=1,xtickformat='(A1)',xr=xr,yr=[1.00E-04,10.00],/xlog,/ylog else $;,ytickformat='dstmwrp_exp'
                                cgplot,1/((*(*!dustem_data).fpolext).wav)(idx_filt),((*(*!dustem_data).fpolext).values)(idx_filt)*100,charsize=1.15,color='Dodger Blue',psym=16,syms=0.8,pos=position,/ys,xs=1,noerase=1,xtickformat='(A1)',xtit=' ',xr=xr,yr=[1.00E-04,10.00],/xlog,/ylog;,ytickformat='dstmwrp_exp'
18e4331f   Ilyes Choubani   general update (f...
1142
1143
1144
                            
                            
                            ;Plotting of the filter error points
0068116a   Ilyes Choubani   General update + ...
1145
1146
                            rms=3.*((*(*!dustem_data).fpolext).sigma)(idx_filt)/2.;/dustem_polfrac(idx_filt)
                            cgerrplot,1/((*(*!dustem_data).fpolext).wav)(idx_filt),(((*(*!dustem_data).fpolext).values)(idx_filt)-rms)*100,(((*(*!dustem_data).fpolext).values)(idx_filt)+rms)*100,color='Dodger Blue'
67bd858a   Ilyes Choubani   Replication of th...
1147
1148
1149
1150
1151
                            
                        endif
                        
                        
                        
94c4dffa   Ilyes Choubani   update + fixes fo...
1152
                        xyouts,pospltxt[0],pospltxt[1],textoidl('\tau_{PEXT}/\tau_{EXT} (%)'),color=0,/normal,charsize=1.3;,charthick=2.0
67bd858a   Ilyes Choubani   Replication of th...
1153
1154
1155
1156
                         
                        ;Locating all the hidden data points (spectrum+filter)
                        
                        ;The filtering has been done prior (in the primary routine)
0068116a   Ilyes Choubani   General update + ...
1157
                        match2,((*(*!dustem_data).fpolext).wav),((*(*!dustem_show).fpolext).wav),show_polfracpts,fit_polfracpts ;only show_polfracpts is needed
74103816   Ilyes Choubani   small update
1158
                        idx_rmv_polfrac=where(fit_polfracpts eq -1, ct_hdnpts) ; indices of the points to hide; 
8fbdb4c3   Ilyes Choubani   Fixed minor 0/0 e...
1159
                        
67bd858a   Ilyes Choubani   Replication of th...
1160
                        ;Locating the hidden spectrum and filter data points                                        
0068116a   Ilyes Choubani   General update + ...
1161
1162
                        idx_filt_hdn = where(((*(*!dustem_show).fpolext).filt_names)(idx_rmv_polfrac) NE 'SPECTRUM',ct_filt_hdn)
                        idx_spec_hdn = where(((*(*!dustem_show).fpolext).filt_names)(idx_rmv_polfrac) EQ 'SPECTRUM',ct_spec_hdn)
67bd858a   Ilyes Choubani   Replication of th...
1163
1164
1165
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1167
                        if ct_hdnpts ne 0 then begin ;Hidden data points are present 
                            ;stop
                            
                            if ct_spec_hdn ne 0 then begin
                                ;Plotting of hidden spectrum data points
0068116a   Ilyes Choubani   General update + ...
1168
                                cgplot,1/(((*(*!dustem_show).fpolext).wav)[idx_rmv_polfrac])(idx_spec_hdn),(((*(*!dustem_show).fpolext).values)[idx_rmv_polfrac])(idx_spec_hdn)*100,pos=position,/xlog,/ylog,/ys,xs=1,noerase=1,charsize=1.15,xtickformat='(A1)',color='Black',xr=xr,yr=[1.00E-04,10.00],psym=8,syms=0.8
67bd858a   Ilyes Choubani   Replication of th...
1169
1170
                                
                                ;Plotting of hidden spectrum error points
0068116a   Ilyes Choubani   General update + ...
1171
1172
                                rms=3.*(((*(*!dustem_show).fpolext).sigma)[idx_rmv_polfrac])(idx_spec_hdn)/2.
                                cgerrplot,1/(((*(*!dustem_show).fpolext).wav)[idx_rmv_polfrac])(idx_spec_hdn),((((*(*!dustem_show).fpolext).values)[idx_rmv_polfrac])(idx_spec_hdn)-rms)*100,((((*(*!dustem_show).fpolext).values)[idx_rmv_polfrac])(idx_spec_hdn)+rms)*100,color='Black'
67bd858a   Ilyes Choubani   Replication of th...
1173
1174
1175
1176
1177
1178
                            endif                                           
                            
                            if ct_filt_hdn ne 0 then begin
                                ;stop
                                plotsym,0, /fill
                                ;Plotting of hidden filter data points 
0068116a   Ilyes Choubani   General update + ...
1179
                                cgplot,1/(((*(*!dustem_show).fpolext).wav)[idx_rmv_polfrac])(idx_filt_hdn),(((*(*!dustem_show).fpolext).values)[idx_rmv_polfrac])(idx_filt_hdn)*100,pos=position,/xlog,/ylog,/ys,xs=1,noerase=1,charsize=1.15,xtickformat='(A1)',color='Black',xr=xr,yr=[1.00E-04,10.00],psym=8,syms=0.8                                           
67bd858a   Ilyes Choubani   Replication of th...
1180
1181
                                ;stop
                                ;Plotting of hidden filter error point
0068116a   Ilyes Choubani   General update + ...
1182
1183
                                rms=3.*(((*(*!dustem_show).fpolext).sigma)[idx_rmv_polfrac])(idx_filt_hdn)/2.
                                cgerrplot,1/(((*(*!dustem_show).fpolext).wav)[idx_rmv_polfrac])(idx_filt_hdn),((((*(*!dustem_show).fpolext).values)[idx_rmv_polfrac])(idx_filt_hdn)-rms)*100,((((*(*!dustem_show).fpolext).values)[idx_rmv_polfrac])(idx_filt_hdn)+rms)*100,color='Black'
67bd858a   Ilyes Choubani   Replication of th...
1184
1185
1186
1187
1188
1189
1190
1191
1192
1193
1194
1195
1196
1197
1198
1199
1200
                                 
                            endif 
                                                           
                        endif 
                        
                    
                    endelse 
                
            endelse
        
        
        END
        
        
     
        'PSI_EM': begin ;will be copying code from qsed and hopefully it will work. NB: THIS IS FALSE . YOU DO NOT NEED A LOGARITHMIC AXIS
            
4b745987   Ilyes Choubani   minor update
1201
            IF ct_m NE 0 then begin
96a72c8b   Ilyes Choubani   seperating xrange...
1202
            
4b745987   Ilyes Choubani   minor update
1203
1204
1205
1206
                xr=xr_m 
                yr=yr_m
                
            ENDIF
0068116a   Ilyes Choubani   General update + ...
1207
1208
            idx_filt=where((*(*!dustem_data).psi_em).filt_names NE 'SPECTRUM',ct_filt)
            idx_spec=where((*(*!dustem_data).psi_em).filt_names EQ 'SPECTRUM',ct_spec)
67bd858a   Ilyes Choubani   Replication of th...
1209
1210
1211
1212
1213
1214
1215
            
            ;#1) get the plotting keywords (pertaining to each data set) @here when the _extra structure is ready
            
            if keyword_set(nodata) then begin ;when the data is not present
            
                    xtit = ''
                    cgplot,wavs,wavs*0.,/nodata,/xlog,/ys,xs=1,pos=position,noerase=1,charsize=1.15,xtickformat='(A1)',color='Powder Blue',xr=xr,xtit='',yr=[-90.00,90.00],psym=8,syms=0.8  
07372e26   Ilyes Choubani   Corrected huge pl...
1216
                    xyouts,pospltxt[0],pospltxt[1],textoidl('\Psi (deg)'),color=0,/normal,charsize=1.3;,charthick=2.0
67bd858a   Ilyes Choubani   Replication of th...
1217
1218
1219
1220
1221
                 
            endif else begin ;when the data is present ; normal plot     
                        
                    if keyword_set(refresh) then begin ;The data points in the plot are being refreshed
                        
67bd858a   Ilyes Choubani   Replication of th...
1222
1223
1224
1225
1226
1227
1228
                        
                        ;Plotting of the spectra of the dust species
                        FOR i=0L,Ngrains-1 DO BEGIN
                            testneq = where(st.polsed.(i+1) ne 0,countneq)
                            if countneq ne 0 then begin
                                vecfin = st.polsed.(i+1)*0.0
                            
07372e26   Ilyes Choubani   Corrected huge pl...
1229
                                vecfin[testneq] = ((st.polsed.(i+1))[testneq])/(st.sed.(i+1))[testneq];extra_spec[testneq];(st.sed.em_tot)[testneq];spec[testneq] ;removed multiplication by 'fact'. 
67bd858a   Ilyes Choubani   Replication of th...
1230
                                
07372e26   Ilyes Choubani   Corrected huge pl...
1231
1232
                                ;*****NB: These two lines will have to be modified if the polarization angle varies with the dust species and/or with wavelength
                                polar_ippsi2iqu,st.sed.(i+1)*fact,specqgrain,specugrain,vecfin,replicate(!dustem_psi,n_elements(vecfin)) ;temporary solution
f2caf3f1   Ilyes Choubani   Debugging some er...
1233
1234
1235
1236
1237
1238
1239
                                
                                ;You can replace the -0 values by 0 in order to avoid atan giving wrong values 
                                testnzero = where(specqgrain EQ -0., ct_nzero)
                                if ct_nzero ne 0 then specqgrain[testnzero] = 0
                                
                                cgoplot,st.polsed.wav,0.5*atan(specugrain, specqgrain)/!dtor,pos=position,noerase=1,color=use_cols[i],xr=xr,/xlog,ytickformat='(A1)',yr=[-90.00,90.00]
                                ;cgoplot,st.polsed.wav,replicate(!dustem_psi,n_elements(vecfin)),pos=position,noerase=1,color=use_cols[i],xr=xr,/xlog,ytickformat='(A1)',yr=[-90.00,90.00]
0068116a   Ilyes Choubani   General update + ...
1240
                                
67bd858a   Ilyes Choubani   Replication of th...
1241
1242
                            endif 
                        ENDFOR
1bc09467   Ilyes Choubani   fixed issue with ...
1243
                                                                        
67bd858a   Ilyes Choubani   Replication of th...
1244
1245
1246
1247
1248
1249
                        ;Plotting of the plugins.
                        for i=0L,n_plgns-1 do begin
                            
                            if isa((*!dustem_plugin).(0).spec) then begin
                                IF total(strsplit((*(*!dustem_plugin).(i).scope),'+',/extract) EQ 'ADD_POLSED') THEN begin
                                    ;dustem_plot_mlog,st.polsed.wav,(*(*!dustem_plugin).(i))[*,1],ppositions=position, /overplot, noerase=1, color=clrs_plgns[i], linestyle=2,xr=xr,/xlog
d7a2d8eb   Ilyes Choubani   typo
1250
                                    cgoplot,st.polsed.wav,0.5*atan((*(*!dustem_plugin).(i).spec)[*,2],(*(*!dustem_plugin).(i).spec)[*,1])/degtorad,pos=position,noerase=1, color=clrs_plgns[i], linestyle=2 ,xr=xr,/xlog,ytickformat='(A1)',yr=[-90.00,90.00]   
67bd858a   Ilyes Choubani   Replication of th...
1251
1252
1253
                                ENDIF
                            ENDIF
                        endfor
1bc09467   Ilyes Choubani   fixed issue with ...
1254
                        
67bd858a   Ilyes Choubani   Replication of th...
1255
1256
1257
1258
                         ;PLotting of the interpolates corresponding to spectrum and filter points
                        
                         IF ct_spec NE 0 THEN BEGIN
                         
0068116a   Ilyes Choubani   General update + ...
1259
                             xx=((*(*!dustem_data).psi_em).wav)[idx_spec]
67bd858a   Ilyes Choubani   Replication of th...
1260
1261
1262
                             yy=dustem_interp[idx_spec]
                             cgoplot,xx,yy,color='Indian Red',pos=position,psym=7,syms=2,noerase=1   
                         ENDIF
1bc09467   Ilyes Choubani   fixed issue with ...
1263
                         
67bd858a   Ilyes Choubani   Replication of th...
1264
1265
                         
                         IF ct_filt NE 0 THEN BEGIN
0068116a   Ilyes Choubani   General update + ...
1266
                             xx=((*(*!dustem_data).psi_em).wav)[idx_filt]
67bd858a   Ilyes Choubani   Replication of th...
1267
1268
1269
                             yy=dustem_interp[idx_filt]
                             cgoplot,xx,yy,color='red',pos=position,psym=6,syms=2,noerase=1
                         ENDIF
1bc09467   Ilyes Choubani   fixed issue with ...
1270
                         
67bd858a   Ilyes Choubani   Replication of th...
1271
1272
1273
1274
                         
                         ;Plotting of the total dust emission spectrum
                         ;cgoplot,st.sed.wav,0.5*atan(specu,specq)/degtorad,pos=position,noerase=1,/xlog,/ys,/xs
                         cgoplot,st.sed.wav,dustem_spec,pos=position,noerase=1,/xlog,/ys,/xs               
1bc09467   Ilyes Choubani   fixed issue with ...
1275
                                
67bd858a   Ilyes Choubani   Replication of th...
1276
                    endif else begin ;The data points in the plot that remain unchanged.
8fbdb4c3   Ilyes Choubani   Fixed minor 0/0 e...
1277
                         
67bd858a   Ilyes Choubani   Replication of th...
1278
1279
1280
1281
1282
                        
                        ;Spectrum points are treated before for plotting reasons. 
                        if ct_spec ne 0 then begin 
                            
                            ;Plotting of spectrum data points (to be fitted)
0068116a   Ilyes Choubani   General update + ...
1283
                            cgplot,((*(*!dustem_data).psi_em).wav)(idx_spec),((*(*!dustem_data).psi_em).values)(idx_spec),/xlog,/ys,xs=1,pos=position,noerase=1,xtit=' ',charsize=1.15,xtickformat='(A1)',color='Powder Blue',xr=xr,yr=[-90.00,90.00],psym=16,syms=0.8;,ytickformat='dstmwrp_exp'                
67bd858a   Ilyes Choubani   Replication of th...
1284
1285
                            
                            ;Plotting of the spectrum error points
0068116a   Ilyes Choubani   General update + ...
1286
1287
                            rms=3.*((*(*!dustem_data).psi_em).sigma)(idx_spec)/2.
                            cgerrplot,((*(*!dustem_data).psi_em).wav)(idx_spec),((*(*!dustem_data).psi_em).values)(idx_spec)-rms,((*(*!dustem_data).psi_em).values)(idx_spec)+rms,color='Powder Blue'
67bd858a   Ilyes Choubani   Replication of th...
1288
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                        endif
                        
                        if ct_filt ne 0 then begin
                        
                            ;Plotting of filter data points (to be fitted) + testing for prior plotting                         
0068116a   Ilyes Choubani   General update + ...
1294
1295
                            if ct_spec ne 0 then cgoplot,((*(*!dustem_data).psi_em).wav)(idx_filt),((*(*!dustem_data).psi_em).values)(idx_filt),charsize=1.15,color='Dodger Blue',psym=16,syms=0.8,pos=position,/ys,xs=1,noerase=1,xtickformat='(A1)',xr=xr,yr=[-90.00,90.00],/xlog else $;,ytickformat='dstmwrp_exp'
                                cgplot,((*(*!dustem_data).psi_em).wav)(idx_filt),((*(*!dustem_data).psi_em).values)(idx_filt),charsize=1.15,color='Dodger Blue',psym=16,syms=0.8,pos=position,/ys,xs=1,noerase=1,xtickformat='(A1)',xtit=' ',xr=xr,yr=[-90.00,90.00],/xlog;,ytickformat='dstmwrp_exp'
67bd858a   Ilyes Choubani   Replication of th...
1296
1297
1298
                            
                            
                            ;Plotting of the filter error points
0068116a   Ilyes Choubani   General update + ...
1299
1300
                            rms=3.*((*(*!dustem_data).psi_em).sigma)(idx_filt)/2.;/dustem_psi_em(idx_filt)
                            cgerrplot,((*(*!dustem_data).psi_em).wav)(idx_filt),((*(*!dustem_data).psi_em).values)(idx_filt)-rms,((*(*!dustem_data).psi_em).values)(idx_filt)+rms,color='Dodger Blue'
67bd858a   Ilyes Choubani   Replication of th...
1301
1302
1303
1304
1305
                            
                        endif
                        
                        
                        
07372e26   Ilyes Choubani   Corrected huge pl...
1306
                        xyouts,pospltxt[0],pospltxt[1],textoidl('\Psi (deg)'),color=0,/normal,charsize=1.3;,charthick=2.0
67bd858a   Ilyes Choubani   Replication of th...
1307
1308
1309
1310
                         
                        ;Locating all the hidden data points (spectrum+filter)
                        
                        ;The filtering has been done prior (in the primary routine)
0068116a   Ilyes Choubani   General update + ...
1311
                        match2,((*(*!dustem_data).psi_em).wav),((*(*!dustem_show).psi_em).wav),show_psi_empts,fit_psi_empts ;only show_psi_empts is needed
74103816   Ilyes Choubani   small update
1312
                        idx_rmv_psi_em=where(fit_psi_empts eq -1, ct_hdnpts) ; indices of the points to hide
67bd858a   Ilyes Choubani   Replication of th...
1313
1314
                        ;stop
                        ;Locating the hidden spectrum and filter data points                                        
0068116a   Ilyes Choubani   General update + ...
1315
1316
                        idx_filt_hdn = where(((*(*!dustem_show).psi_em).filt_names)(idx_rmv_psi_em) NE 'SPECTRUM',ct_filt_hdn)
                        idx_spec_hdn = where(((*(*!dustem_show).psi_em).filt_names)(idx_rmv_psi_em) EQ 'SPECTRUM',ct_spec_hdn)
67bd858a   Ilyes Choubani   Replication of th...
1317
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                        if ct_hdnpts ne 0 then begin ;Hidden data points are present 
                            ;stop
                            
                            if ct_spec_hdn ne 0 then begin
                                ;Plotting of hidden spectrum data points
0068116a   Ilyes Choubani   General update + ...
1322
                                cgplot,(((*(*!dustem_show).psi_em).wav)[idx_rmv_psi_em])(idx_spec_hdn),(((*(*!dustem_show).psi_em).values)[idx_rmv_psi_em])(idx_spec_hdn),pos=position,/xlog,/ys,xs=1,noerase=1,charsize=1.15,xtickformat='(A1)',color='Black',xr=xr,yr=[-90.00,90.00],psym=8,syms=0.8
67bd858a   Ilyes Choubani   Replication of th...
1323
1324
                                
                                ;Plotting of hidden spectrum error points
0068116a   Ilyes Choubani   General update + ...
1325
1326
                                rms=3.*(((*(*!dustem_show).psi_em).sigma)[idx_rmv_psi_em])(idx_spec_hdn)/2.
                                cgerrplot,(((*(*!dustem_show).psi_em).wav)[idx_rmv_psi_em])(idx_spec_hdn),(((*(*!dustem_show).psi_em).values)[idx_rmv_psi_em])(idx_spec_hdn)-rms,(((*(*!dustem_show).psi_em).values)[idx_rmv_psi_em])(idx_spec_hdn)+rms,color='Black'
67bd858a   Ilyes Choubani   Replication of th...
1327
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                            endif                                           
                            
                            if ct_filt_hdn ne 0 then begin
                                ;stop
                                plotsym,0, /fill
                                ;Plotting of hidden filter data points 
0068116a   Ilyes Choubani   General update + ...
1333
                                cgplot,(((*(*!dustem_show).psi_em).wav)[idx_rmv_psi_em])(idx_filt_hdn),(((*(*!dustem_show).psi_em).values)[idx_rmv_psi_em])(idx_filt_hdn),pos=position,/xlog,/ys,xs=1,noerase=1,charsize=1.15,xtickformat='(A1)',color='Black',xr=xr,yr=[-90.00,90.00],psym=8,syms=0.8                                           
67bd858a   Ilyes Choubani   Replication of th...
1334
1335
                                ;stop
                                ;Plotting of hidden filter error point
0068116a   Ilyes Choubani   General update + ...
1336
1337
                                rms=3.*(((*(*!dustem_show).psi_em).sigma)[idx_rmv_psi_em])(idx_filt_hdn)/2.
                                cgerrplot,(((*(*!dustem_show).psi_em).wav)[idx_rmv_psi_em])(idx_filt_hdn),(((*(*!dustem_show).psi_em).values)[idx_rmv_psi_em])(idx_filt_hdn)-rms,(((*(*!dustem_show).psi_em).values)[idx_rmv_psi_em])(idx_filt_hdn)+rms,color='Black'
67bd858a   Ilyes Choubani   Replication of th...
1338
1339
1340
1341
                                 
                            endif 
                                                           
                        endif 
67bd858a   Ilyes Choubani   Replication of th...
1342
1343
                    
                    endelse 
4b745987   Ilyes Choubani   minor update
1344
               
67bd858a   Ilyes Choubani   Replication of th...
1345
            endelse 
67bd858a   Ilyes Choubani   Replication of th...
1346
1347
1348
1349
1350
           
           
        end
        
        'PSI_EXT': begin ;MODIFYING THIS NOW - You should write a plugin for the modification of polarized extinction so that !dustem_psi_ext is different than !dustem_psi. 
96a72c8b   Ilyes Choubani   seperating xrange...
1351
1352
            
            
4b745987   Ilyes Choubani   minor update
1353
1354
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1356
            IF ct_x NE 0 then begin
                xr=xr_x 
                yr=yr_x
            ENDIF
67bd858a   Ilyes Choubani   Replication of th...
1357
        
0068116a   Ilyes Choubani   General update + ...
1358
1359
            idx_filt=where((*(*!dustem_data).psi_ext).filt_names NE 'SPECTRUM',ct_filt)
            idx_spec=where((*(*!dustem_data).psi_ext).filt_names EQ 'SPECTRUM',ct_spec)
67bd858a   Ilyes Choubani   Replication of th...
1360
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1364
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1366
            
            ;#1) get the plotting keywords (pertaining to each data set) @here when the _extra structure is ready
            
            if keyword_set(nodata) then begin ;when the data is not present
            
                    xtit = ''
                    cgplot,wavs,wavs*0.,/nodata,/xlog,/ys,xs=1,pos=position,noerase=1,charsize=1.15,xtickformat='(A1)',color='Powder Blue',xr=xr,xtit='',yr=[-90.00,90.00],psym=8,syms=0.8  
f2caf3f1   Ilyes Choubani   Debugging some er...
1367
                    xyouts,pospltxt[0],pospltxt[1],textoidl('\Psi_{EXT} (deg)'),color=0,/normal,charsize=1.3;,charthick=2.0
67bd858a   Ilyes Choubani   Replication of th...
1368
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1371
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1374
1375
                 
            endif else begin ;when the data is present ; normal plot     
                        
                    if keyword_set(refresh) then begin ;The data points in the plot are being refreshed
                        
                        ;##################TAKEN FROM SED
                        
                        ;Plotting of the spectra of the dust species
4b745987   Ilyes Choubani   minor update
1376
                        
67bd858a   Ilyes Choubani   Replication of th...
1377
                        FOR i=0L,Ngrains-1 DO BEGIN
4b745987   Ilyes Choubani   minor update
1378
                            
07372e26   Ilyes Choubani   Corrected huge pl...
1379
1380
1381
                            vecto = transpose((st.polext.(1))[i,*]+(st.polext.(2))[i,*])
                            vecte = transpose(((st.ext.(1))[i,*]+(st.ext.(2))[i,*]))
                            testneq = where(vecto ne 0,countneq)
f2caf3f1   Ilyes Choubani   Debugging some er...
1382
1383
1384
1385
                            
                            ;testing whether the polext values contain negative ones
                            testpos = where(vecto LT 0, countpos)
                            IF countpos NE 0 THEN vecto[testpos] = 0
4b745987   Ilyes Choubani   minor update
1386
                              
67bd858a   Ilyes Choubani   Replication of th...
1387
                            if countneq ne 0 then begin
67bd858a   Ilyes Choubani   Replication of th...
1388
                                
f2caf3f1   Ilyes Choubani   Debugging some er...
1389
                                vecfin = vecto*0.0
67bd858a   Ilyes Choubani   Replication of th...
1390
                                
07372e26   Ilyes Choubani   Corrected huge pl...
1391
                                vecfin[testneq] = (vecto[testneq])/vecte[testneq];extra_spec[testneq];(st.sed.em_tot)[testneq];spec[testneq] ;removed multiplication by 'fact'. 
67bd858a   Ilyes Choubani   Replication of th...
1392
                                
f2caf3f1   Ilyes Choubani   Debugging some er...
1393
1394
                                polar_ippsi2iqu,vecte*(*!dustem_HCD)/1.0e21,specqgrain,specugrain,vecfin,replicate(!dustem_psi_ext,n_elements(vecfin)) ;temporary solution
                                 
afde94a3   Ilyes Choubani   general update
1395
                                cgoplot,1/st.polext.wav,0.5*atan(specugrain,specqgrain)/degtorad,pos=position,noerase=1,color=use_cols[i],xr=xr,/xlog,ytickformat='(A1)',yr=[-90.00,90.00]
67bd858a   Ilyes Choubani   Replication of th...
1396
1397
                            endif 
                        ENDFOR
f2caf3f1   Ilyes Choubani   Debugging some er...
1398
                                                                              
67bd858a   Ilyes Choubani   Replication of th...
1399
1400
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                        ;Plotting of the plugins.
                        for i=0L,n_plgns-1 do begin
                            
                            if isa((*!dustem_plugin).(0).spec) then begin
                                IF total(strsplit((*(*!dustem_plugin).(i).scope),'+',/extract) EQ 'ADD_POLEXT') THEN begin
                                    ;dustem_plot_mlog,st.polsed.wav,(*(*!dustem_plugin).(i))[*,1],ppositions=position, /overplot, noerase=1, color=clrs_plgns[i], linestyle=2,xr=xr,/xlog
afde94a3   Ilyes Choubani   general update
1405
                                    cgoplot_mlog,1/st.polext.wav,0.5*atan((*(*!dustem_plugin).(i).spec)[*,2],(*(*!dustem_plugin).(i).spec)[*,1])/degtorad,pos=position,noerase=1, color=clrs_plgns[i], linestyle=2 ,xr=xr,/xlog,ytickformat='(A1)',yr=[-90.00,90.00]   
67bd858a   Ilyes Choubani   Replication of th...
1406
1407
1408
1409
1410
1411
1412
1413
                                ENDIF
                            ENDIF
                        endfor
                        
                         ;PLotting of the interpolates corresponding to spectrum and filter points
                        
                         IF ct_spec NE 0 THEN BEGIN
                         
0068116a   Ilyes Choubani   General update + ...
1414
                             xx=((*(*!dustem_data).psi_ext).wav)[idx_spec]
67bd858a   Ilyes Choubani   Replication of th...
1415
                             yy=dustem_interp[idx_spec]
1bc09467   Ilyes Choubani   fixed issue with ...
1416
                             cgoplot,1/xx,yy,color='Indian Red',pos=position,psym=7,syms=2,noerase=1   
67bd858a   Ilyes Choubani   Replication of th...
1417
1418
1419
1420
                         ENDIF
                         
                         
                         IF ct_filt NE 0 THEN BEGIN
0068116a   Ilyes Choubani   General update + ...
1421
                             xx=((*(*!dustem_data).psi_ext).wav)[idx_filt]
67bd858a   Ilyes Choubani   Replication of th...
1422
                             yy=dustem_interp[idx_filt]
1bc09467   Ilyes Choubani   fixed issue with ...
1423
                             cgoplot,1/xx,yy,color='red',pos=position,psym=6,syms=2,noerase=1
67bd858a   Ilyes Choubani   Replication of th...
1424
1425
                         ENDIF
                         
67bd858a   Ilyes Choubani   Replication of th...
1426
1427
                         ;Plotting of the total dust emission spectrum
                         ;cgoplot,st.sed.wav,0.5*atan(specu,specq)/degtorad,pos=position,noerase=1,/xlog,/ys,/xs
1bc09467   Ilyes Choubani   fixed issue with ...
1428
                         cgoplot,1/st.ext.wav,dustem_spec,pos=position,noerase=1,/xlog,/ys,/xs               
67bd858a   Ilyes Choubani   Replication of th...
1429
1430
1431
                                
                    endif else begin ;The data points in the plot that remain unchanged.
                        
67bd858a   Ilyes Choubani   Replication of th...
1432
1433
1434
1435
                        ;Spectrum points are treated before for plotting reasons. 
                        if ct_spec ne 0 then begin 
                            
                            ;Plotting of spectrum data points (to be fitted)
0068116a   Ilyes Choubani   General update + ...
1436
                            cgplot,1/((*(*!dustem_data).psi_ext).wav)(idx_spec),((*(*!dustem_data).psi_ext).values)(idx_spec),/xlog,/ys,xs=1,pos=position,noerase=1,xtit=' ',charsize=1.15,xtickformat='(A1)',color='Powder Blue',xr=xr,yr=[-90.00,90.00],psym=16,syms=0.8;,ytickformat='dstmwrp_exp'                
67bd858a   Ilyes Choubani   Replication of th...
1437
1438
                            
                            ;Plotting of the spectrum error points
0068116a   Ilyes Choubani   General update + ...
1439
1440
                            rms=3.*((*(*!dustem_data).psi_ext).sigma)(idx_spec)/2.
                            cgerrplot,1/((*(*!dustem_data).psi_ext).wav)(idx_spec),((*(*!dustem_data).psi_ext).values)(idx_spec)-rms,((*(*!dustem_data).psi_ext).values)(idx_spec)+rms,color='Powder Blue'
67bd858a   Ilyes Choubani   Replication of th...
1441
1442
1443
1444
1445
1446

                        endif
                        
                        if ct_filt ne 0 then begin
                        
                            ;Plotting of filter data points (to be fitted) + testing for prior plotting                         
0068116a   Ilyes Choubani   General update + ...
1447
1448
                            if ct_spec ne 0 then cgoplot,1/((*(*!dustem_data).psi_ext).wav)(idx_filt),((*(*!dustem_data).psi_ext).values)(idx_filt),charsize=1.15,color='Dodger Blue',psym=16,syms=0.8,pos=position,/ys,xs=1,noerase=1,xtickformat='(A1)',xr=xr,yr=[-90.00,90.00],/xlog else $;,ytickformat='dstmwrp_exp'
                                cgplot,1/((*(*!dustem_data).psi_ext).wav)(idx_filt),((*(*!dustem_data).psi_ext).values)(idx_filt),charsize=1.15,color='Dodger Blue',psym=16,syms=0.8,pos=position,/ys,xs=1,noerase=1,xtickformat='(A1)',xtit=' ',xr=xr,yr=[-90.00,90.00],/xlog;,ytickformat='dstmwrp_exp'
67bd858a   Ilyes Choubani   Replication of th...
1449
1450
1451
                            
                            
                            ;Plotting of the filter error points
0068116a   Ilyes Choubani   General update + ...
1452
1453
                            rms=3.*((*(*!dustem_data).psi_ext).sigma)(idx_filt)/2.;/dustem_psi_em(idx_filt)
                            cgerrplot,1/((*(*!dustem_data).psi_ext).wav)(idx_filt),((*(*!dustem_data).psi_ext).values)(idx_filt)-rms,((*(*!dustem_data).psi_ext).values)(idx_filt)+rms,color='Dodger Blue'
67bd858a   Ilyes Choubani   Replication of th...
1454
1455
1456
1457
1458
                            
                        endif
                        
                        
                        
f2caf3f1   Ilyes Choubani   Debugging some er...
1459
                        xyouts,pospltxt[0],pospltxt[1],textoidl('\Psi_{EXT} (deg)'),color=0,/normal,charsize=1.3;,charthick=2.0
67bd858a   Ilyes Choubani   Replication of th...
1460
1461
1462
1463
                         
                        ;Locating all the hidden data points (spectrum+filter)
                        
                        ;The filtering has been done prior (in the primary routine)
0068116a   Ilyes Choubani   General update + ...
1464
                        match2,((*(*!dustem_data).psi_ext).wav),((*(*!dustem_show).psi_ext).wav),show_psi_empts,fit_psi_empts ;only show_psi_empts is needed
74103816   Ilyes Choubani   small update
1465
                        idx_rmv_psi_em=where(fit_psi_empts eq -1, ct_hdnpts) ; indices of the points to hide
67bd858a   Ilyes Choubani   Replication of th...
1466
1467
                        ;stop
                        ;Locating the hidden spectrum and filter data points                                        
0068116a   Ilyes Choubani   General update + ...
1468
1469
                        idx_filt_hdn = where(((*(*!dustem_show).psi_ext).filt_names)(idx_rmv_psi_em) NE 'SPECTRUM',ct_filt_hdn) ;keeping psi_em notation for counters...
                        idx_spec_hdn = where(((*(*!dustem_show).psi_ext).filt_names)(idx_rmv_psi_em) EQ 'SPECTRUM',ct_spec_hdn)
67bd858a   Ilyes Choubani   Replication of th...
1470
1471
1472
1473
1474
                        if ct_hdnpts ne 0 then begin ;Hidden data points are present 
                            ;stop
                            
                            if ct_spec_hdn ne 0 then begin
                                ;Plotting of hidden spectrum data points
0068116a   Ilyes Choubani   General update + ...
1475
                                cgplot,1/(((*(*!dustem_show).psi_ext).wav)[idx_rmv_psi_em])(idx_spec_hdn),(((*(*!dustem_show).psi_ext).values)[idx_rmv_psi_em])(idx_spec_hdn),pos=position,/xlog,/ys,xs=1,noerase=1,charsize=1.15,xtickformat='(A1)',color='Black',xr=xr,yr=[-90.00,90.00],psym=8,syms=0.8
67bd858a   Ilyes Choubani   Replication of th...
1476
1477
                                
                                ;Plotting of hidden spectrum error points
0068116a   Ilyes Choubani   General update + ...
1478
1479
                                rms=3.*(((*(*!dustem_show).psi_ext).sigma)[idx_rmv_psi_em])(idx_spec_hdn)/2.
                                cgerrplot,1/(((*(*!dustem_show).psi_ext).wav)[idx_rmv_psi_em])(idx_spec_hdn),(((*(*!dustem_show).psi_ext).values)[idx_rmv_psi_em])(idx_spec_hdn)-rms,(((*(*!dustem_show).psi_ext).values)[idx_rmv_psi_em])(idx_spec_hdn)+rms,color='Black'
67bd858a   Ilyes Choubani   Replication of th...
1480
1481
1482
1483
1484
1485
                            endif                                           
                            
                            if ct_filt_hdn ne 0 then begin
                                ;stop
                                plotsym,0, /fill
                                ;Plotting of hidden filter data points 
0068116a   Ilyes Choubani   General update + ...
1486
                                cgplot,1/(((*(*!dustem_show).psi_ext).wav)[idx_rmv_psi_em])(idx_filt_hdn),(((*(*!dustem_show).psi_ext).values)[idx_rmv_psi_em])(idx_filt_hdn),pos=position,/xlog,/ys,xs=1,noerase=1,charsize=1.15,xtickformat='(A1)',color='Black',xr=xr,yr=[-90.00,90.00],psym=8,syms=0.8                                           
67bd858a   Ilyes Choubani   Replication of th...
1487
1488
                                ;stop
                                ;Plotting of hidden filter error point
0068116a   Ilyes Choubani   General update + ...
1489
1490
                                rms=3.*(((*(*!dustem_show).psi_ext).sigma)[idx_rmv_psi_em])(idx_filt_hdn)/2.
                                cgerrplot,1/(((*(*!dustem_show).psi_ext).wav)[idx_rmv_psi_em])(idx_filt_hdn),(((*(*!dustem_show).psi_ext).values)[idx_rmv_psi_em])(idx_filt_hdn)-rms,(((*(*!dustem_show).psi_ext).values)[idx_rmv_psi_em])(idx_filt_hdn)+rms,color='Black'
67bd858a   Ilyes Choubani   Replication of th...
1491
1492
1493
1494
1495
1496
1497
1498
1499
1500
1501
1502
                                 
                            endif 
                                                           
                        endif 
                        
                    endelse 
                
            endelse 
        
        end
        
        'QSED': begin ; THE ONE I WILL BE WORKING ON
96a72c8b   Ilyes Choubani   seperating xrange...
1503
            
4b745987   Ilyes Choubani   minor update
1504
1505
1506
1507
1508
            IF ct_m NE 0 then begin
            
                xr=xr_m
                yr=yr_m
            ENDIF
67bd858a   Ilyes Choubani   Replication of th...
1509
            
1bc09467   Ilyes Choubani   fixed issue with ...
1510
1511
1512
1513
1514
            vectw=DINDGEN(1001)*(alog10(1E7) - alog10(1E5))/(1000 - 1L) + alog10(1E5)
            vectw=10^vectw[1:*]
            vectw=[wavs,vectw]
            vectx=vectw*0+1
            
0068116a   Ilyes Choubani   General update + ...
1515
1516
            varvar=where((*(*!dustem_data).qsed).values GT 0, testpstv)
            varvar=where((*(*!dustem_data).qsed).values LT 0, testngtv)
67bd858a   Ilyes Choubani   Replication of th...
1517
            
07372e26   Ilyes Choubani   Corrected huge pl...
1518
            
0068116a   Ilyes Choubani   General update + ...
1519
1520
            idx_filt=where((*(*!dustem_data).qsed).filt_names NE 'SPECTRUM', ct_filt)
            idx_spec=where((*(*!dustem_data).qsed).filt_names EQ 'SPECTRUM' , ct_spec)
8fbdb4c3   Ilyes Choubani   Fixed minor 0/0 e...
1521
           
67bd858a   Ilyes Choubani   Replication of th...
1522
            ;Locating all the hidden data points (spectrum+filter)
0068116a   Ilyes Choubani   General update + ...
1523
            match2,((*(*!dustem_data).qsed).wav),((*(*!dustem_show).qsed).wav),show_sedpts,fit_sedpts ;only show_sedpts is needed
74103816   Ilyes Choubani   small update
1524
            idx_rmv_sed=where(fit_sedpts eq -1, ct_hdnpts) ; indices of the points to hide
67bd858a   Ilyes Choubani   Replication of th...
1525
            
67bd858a   Ilyes Choubani   Replication of th...
1526
1527
1528
1529
1530
1531
1532
1533
1534
            
            ;#1) get the plotting keywords (pertaining to each data set) @here when the _extra structure is ready
            
            if keyword_set(nodata) then begin ;when the data is not present
            
                if keyword_set(norm) then begin ;normalized plot
                    
                    xtit=textoidl('\lambda (\mum)')
                    if !run_pol then xtit = ''
1bc09467   Ilyes Choubani   fixed issue with ...
1535
                    cgplot,vectw,vectx,/xlog,/ys,xs=1,pos=position,noerase=1,xtickformat='(A1)',color='Black',xr=xr,xtit=xtit,yr=[0.0,2.0],yticks=2,ymino=2,xticklen=0.1,ytickformat='(F6.2)',charsize=1.0
67bd858a   Ilyes Choubani   Replication of th...
1536
1537
1538
1539
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1541
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                    xyouts,pospltxt[0],pospltxt[1],textoidl('norm'),color=0,/normal,charsize=1.1                        
                
                endif else begin ;normal plot
                    
                    cgplot,wavs,wavs,/nodata,/ylog,/xlog,/ys,xs=1,pos=position,noerase=1,charsize=1.15,xtickformat='(A1)',color='Powder Blue',xr=xr,xtit='',yr=yr,psym=8,syms=0.8  
                    ;cgaxis, xaxis=1 ,xlog=1 ,xrange=((!const.c*1E6/xr)*1E-9),charsize=1.15,title=textoidl('\nu (GHz)'),xticklen=0.05,xminor=10
                    xyouts,pospltxt[0],pospltxt[1],textoidl('Q_{\nu} (MJy/sr)'),color=0,/normal,charsize=1.3;,charthick=2.0
                  
                endelse  
                
            
            endif else begin ;when the data is present 
                
                if keyword_set(norm) then begin 
                    
                    if keyword_set(refresh) then begin ;The data points in the plot that are being refreshed 
                        
                        ;MAJOR LOOP OVER THE SING??? - YES BECAUSE YOU NEED TO KNOW WHICH ONE IS THE 
                
                        IF ct_spec NE 0 THEN BEGIN
0068116a   Ilyes Choubani   General update + ...
1556
                            xx=((*(*!dustem_data).qsed).wav)[idx_spec]
67bd858a   Ilyes Choubani   Replication of th...
1557
                            yy=dustem_interp[idx_spec]
0068116a   Ilyes Choubani   General update + ...
1558
                            rms=3.*((*(*!dustem_data).qsed).sigma)(idx_spec)/2.
f2caf3f1   Ilyes Choubani   Debugging some er...
1559
1560
                            indzero = where(yy NE 0, ct_zero)
                            IF ct_zero NE 0 THEN BEGIN
0068116a   Ilyes Choubani   General update + ...
1561
1562
                                cgoplot,xx[indzero],(((*(*!dustem_data).qsed).values)(idx_spec))[indzero]/yy[indzero],pos=position,psym=16,color='Powder Blue',syms=0.8,noerase=1 
                                cgerrplot,(((*(*!dustem_data).qsed).wav)(idx_spec))[indzero],((((*(*!dustem_data).qsed).values)[idx_spec])[indzero]-rms[indzero])/yy[indzero],((((*(*!dustem_data).qsed).values)[idx_spec])[indzero]+rms[indzero])/yy[indzero],color='Powder Blue'
f2caf3f1   Ilyes Choubani   Debugging some er...
1563
                            ENDIF 
67bd858a   Ilyes Choubani   Replication of th...
1564
1565
1566
1567
                        ENDIF
                        
                        IF ct_filt NE 0 THEN BEGIN
                            ;stop
0068116a   Ilyes Choubani   General update + ...
1568
                            xx=((*(*!dustem_data).qsed).wav)[idx_filt]
67bd858a   Ilyes Choubani   Replication of th...
1569
                            yy=dustem_interp[idx_filt]
0068116a   Ilyes Choubani   General update + ...
1570
                            rms=3.*((*(*!dustem_data).qsed).sigma)(idx_filt)/2.
f2caf3f1   Ilyes Choubani   Debugging some er...
1571
1572
                            indzero = where(yy NE 0, ct_zero)
                            IF ct_zero NE 0 THEN BEGIN
0068116a   Ilyes Choubani   General update + ...
1573
1574
                                cgoplot,xx[indzero],(((*(*!dustem_data).qsed).values)(idx_filt))[indzero]/yy[indzero],pos=position,psym=16,color='Dodger Blue',syms=0.8,noerase=1 
                                cgerrplot,(((*(*!dustem_data).qsed).wav)(idx_filt))[indzero],((((*(*!dustem_data).qsed).values)[idx_filt])[indzero]-rms[indzero])/yy[indzero],((((*(*!dustem_data).qsed).values)[idx_filt])[indzero]+rms[indzero])/yy[indzero],color='Dodger Blue' 
f2caf3f1   Ilyes Choubani   Debugging some er...
1575
                            ENDIF
67bd858a   Ilyes Choubani   Replication of th...
1576
1577
1578
1579
1580
                        ENDIF
      
                        
                    endif else begin ;The data points in the plot that remain unchanged
                        ;stop
afde94a3   Ilyes Choubani   general update
1581
                        ;stitching an array of 1000 more points (up to 1E7) after the end of the dustem wavelength array (dim=800 elements)
1bc09467   Ilyes Choubani   fixed issue with ...
1582
                        
67bd858a   Ilyes Choubani   Replication of th...
1583
1584
                        xtit=textoidl('\lambda (\mum)')
                        ;if !run_pol then xtit = ''
afde94a3   Ilyes Choubani   general update
1585
                        cgplot,vectw,vectx,/xlog,/ys,xs=1,pos=position,noerase=1,color='Black',xr=xr,xtit=xtit,yr=[0.0,2.0],yticks=2,ymino=2,xticklen=0.1,ytickformat='(F6.2)',charsize=1.0
67bd858a   Ilyes Choubani   Replication of th...
1586
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                        xyouts,pospltxt[0],pospltxt[1],textoidl('norm'),color=0,/normal,charsize=1.1
                    
                    endelse
                    
                
                endif else begin ; normal plot - STOPPED HERE FOR QSED
                              
                    if keyword_set(refresh) then begin ;The data points in the plot are being refreshed
                        ;stop
                        if keyword_set(positive_only) then begin
     
                            if testpstv ne 0 then begin
                                ;stop
                                FOR i=0L,Ngrains-1 DO BEGIN
                                    
                                    testneq = where(st.polsed.(i+1) ne 0,countneq)
                                    ;stop
                                    if countneq ne 0 then begin 
                                        vecfin = st.polsed.(i+1)*0.0 ;em_tot can be used here right? 
                                        ;stop
07372e26   Ilyes Choubani   Corrected huge pl...
1606
                                        vecfin[testneq] = ((st.polsed.(i+1))[testneq])/((st.sed.(i+1))[testneq]);extra_spec[testneq];(st.sed.em_tot)[testneq];(st.sed.(i+1))[testneq];*fact;(st.sed.(i+1))[testneq]
67bd858a   Ilyes Choubani   Replication of th...
1607
                                        
8fbdb4c3   Ilyes Choubani   Fixed minor 0/0 e...
1608
1609
                                        polar_ippsi2iqu,st.sed.(i+1)*fact,specqgrain,specugrain,vecfin,replicate(!dustem_psi,n_elements(vecfin)) ;temporary solution
                                                                            
67bd858a   Ilyes Choubani   Replication of th...
1610
                                        dustem_plot_mlog,st.polsed.wav,specqgrain,ppositions=position,/positive_only,/overplot,noerase=1,color=use_cols[i],xr=xr,/xlog,/ylog,ytickformat='(A1)',yr=yr
8fbdb4c3   Ilyes Choubani   Fixed minor 0/0 e...
1611
                                        
67bd858a   Ilyes Choubani   Replication of th...
1612
                                    endif
8fbdb4c3   Ilyes Choubani   Fixed minor 0/0 e...
1613
                                    
67bd858a   Ilyes Choubani   Replication of th...
1614
1615
1616
1617
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                                ENDFOR
                                
                                for i=0L,n_plgns-1 do begin
                                    
                                    IF isa((*!dustem_plugin).(0).spec) THEN BEGIN
                                        IF total(strsplit((*(*!dustem_plugin).(i).scope),'+',/extract) EQ 'ADD_POLSED') THEN begin
                                         
                                            ;dustem_plot_mlog,st.polsed.wav,(*(*!dustem_plugin).(i))[*,1],ppositions=position, /overplot, noerase=1, color=clrs_plgns[i], linestyle=2,xr=xr,/xlog
                                            dustem_plot_mlog,st.polsed.wav,(*(*!dustem_plugin).(i).spec)[*,1],ppositions=position,/positive_only,/overplot,noerase=1, color=clrs_plgns[i], linestyle=2 ,xr=xr,/xlog,/ylog,ytickformat='(A1)',yr=yr      
                                        ENDIF
                                    ENDIF
                                endfor
                                
                                IF ct_spec NE 0 THEN BEGIN
0068116a   Ilyes Choubani   General update + ...
1628
                                    xx=((*(*!dustem_data).qsed).wav)[idx_spec]
67bd858a   Ilyes Choubani   Replication of th...
1629
                                    yy=dustem_interp[idx_spec]
8fbdb4c3   Ilyes Choubani   Fixed minor 0/0 e...
1630
                                    
67bd858a   Ilyes Choubani   Replication of th...
1631
1632
1633
1634
                                    dustem_plot_mlog,xx,yy,ppositions=position,/positive_only, /overplot, noerase=1, color='Indian Red',psym=7,syms=2,xr=xr,/xlog,/ylog,ytickformat='(A1)',yr=yr 
                                ENDIF
                                
                                IF ct_filt NE 0 THEN BEGIN
0068116a   Ilyes Choubani   General update + ...
1635
                                    xx=((*(*!dustem_data).qsed).wav)[idx_filt]
67bd858a   Ilyes Choubani   Replication of th...
1636
                                    yy=dustem_interp[idx_filt]
8fbdb4c3   Ilyes Choubani   Fixed minor 0/0 e...
1637
                                    
67bd858a   Ilyes Choubani   Replication of th...
1638
1639
1640
1641
1642
1643
1644
1645
1646
1647
1648
1649
1650
1651
1652
1653
1654
1655
                                    dustem_plot_mlog,xx,yy,ppositions=position,/positive_only, /overplot, noerase=1, color='red',psym=6,syms=2,xr=xr,/xlog,/ylog,ytickformat='(A1)',yr=yr
                                ENDIF
                                
                                dustem_plot_mlog,st.polsed.wav,dustem_spec,ppositions=position,/positive_only,/overplot,noerase=1,xr=xr,/xlog,/ylog,ytickformat='(A1)',yr=yr                                    
                            
                            endif
                                    
                        
                        endif
                        
                        ;stop
                        if keyword_set(negative_only) then begin
                            ;stop     
                            if testngtv ne 0 then begin
                            
                                ;stop    
                                ;Plotting of the spectra of the dust species
                                FOR i=0L,Ngrains-1 DO BEGIN
0068116a   Ilyes Choubani   General update + ...
1656
                                    
67bd858a   Ilyes Choubani   Replication of th...
1657
1658
1659
1660
1661
                                    testneq = where(st.polsed.(i+1) ne 0,countneq)
                                    ;stop
                                    if countneq ne 0 then begin 
                                        vecfin = st.polsed.(i+1)*0.0 ;em_tot can be used here right? 
                                        ;stop
07372e26   Ilyes Choubani   Corrected huge pl...
1662
                                        vecfin[testneq] = ((st.polsed.(i+1))[testneq])/((st.sed.(i+1))[testneq]);extra_spec[testneq];(st.sed.em_tot)[testneq];(st.sed.(i+1))[testneq];*fact;(st.sed.(i+1))[testneq] 
67bd858a   Ilyes Choubani   Replication of th...
1663
1664
1665
1666
1667
                                        ;stop    
                                        polar_ippsi2iqu,st.sed.(i+1)*fact,specqgrain,specugrain,vecfin,replicate(!dustem_psi,n_elements(vecfin)) ;temporary solution
                                        ;stop
                                        ;dustem_plot_mlog,st.polsed.wav,specqgrain,ppositions=position,/overplot,noerase=1,color=use_cols[i],xr=xr,/xlog 
                                        dustem_plot_mlog,st.polsed.wav,specqgrain,ppositions=position,/negative_only,/overplot,noerase=1,color=use_cols[i],xr=xr,/xlog,/ylog,ytickformat='(A1)',yr=yr
0068116a   Ilyes Choubani   General update + ...
1668
                                        
67bd858a   Ilyes Choubani   Replication of th...
1669
1670
1671
1672
1673
1674
1675
1676
1677
1678
1679
1680
1681
1682
1683
1684
                                    endif 
                                ENDFOR
                                ;Plotting of the plugins
                                for i=0L,n_plgns-1 do begin
                                    IF isa((*!dustem_plugin).(0).spec) THEN BEGIN
                                    
                                        IF total(strsplit((*(*!dustem_plugin).(i).scope),'+',/extract) EQ 'ADD_POLSED') THEN begin
     
                                            ;dustem_plot_mlog,st.polsed.wav,(*(*!dustem_plugin).(i))[*,1],ppositions=position, /overplot, noerase=1, color=clrs_plgns[i], linestyle=2,xr=xr,/xlog
                                            dustem_plot_mlog,st.polsed.wav,(*(*!dustem_plugin).(i).spec)[*,1],ppositions=position,/negative_only,/overplot,noerase=1, color=clrs_plgns[i], linestyle=2 ,xr=xr,/xlog,/ylog,ytickformat='(A1)',yr=yr      
                                        ENDIF
                                        
                                    ENDIF
                                endfor
                                ;PLotting of the interpolates corresponding to spectrum and filter points
                                IF ct_spec NE 0 THEN BEGIN
0068116a   Ilyes Choubani   General update + ...
1685
                                    xx=((*(*!dustem_data).qsed).wav)[idx_spec]
67bd858a   Ilyes Choubani   Replication of th...
1686
                                    yy=dustem_interp[idx_spec]
8fbdb4c3   Ilyes Choubani   Fixed minor 0/0 e...
1687
                                    
67bd858a   Ilyes Choubani   Replication of th...
1688
1689
1690
1691
                                    dustem_plot_mlog,xx,yy,ppositions=position,/negative_only, /overplot, noerase=1, color='Indian Red',psym=7,syms=2,xr=xr,/xlog,/ylog,ytickformat='(A1)',yr=yr 
                                ENDIF
                                
                                IF ct_filt NE 0 THEN BEGIN
0068116a   Ilyes Choubani   General update + ...
1692
                                    xx=((*(*!dustem_data).qsed).wav)[idx_filt]
67bd858a   Ilyes Choubani   Replication of th...
1693
                                    yy=dustem_interp[idx_filt]
67bd858a   Ilyes Choubani   Replication of th...
1694
1695
1696
1697
1698
1699
1700
1701
1702
1703
1704
1705
1706
                                    dustem_plot_mlog,xx,yy,ppositions=position,/negative_only, /overplot, noerase=1, color='red',psym=6,syms=2,xr=xr,/xlog,/ylog,ytickformat='(A1)',yr=yr
                                ENDIF
                                ;Plotting of the total dust emission spectrum
                                dustem_plot_mlog,st.polsed.wav,dustem_spec,ppositions=position,/negative_only,/overplot,noerase=1,xr=xr,/xlog,/ylog,ytickformat='(A1)',yr=yr                                    
                            
                            endif
                                    
                        
                        endif
                                                   
                      ;stop             
                    endif else begin ;The data points in the plot that remain unchanged.; DO NOT USE AN ELSE HERE. 
                        ;stop
8fbdb4c3   Ilyes Choubani   Fixed minor 0/0 e...
1707
                        
67bd858a   Ilyes Choubani   Replication of th...
1708
1709
1710
1711
                        xyouts,pospltxt[0],pospltxt[1],textoidl('Q_{\nu} (MJy/sr)'),color=0,/normal,charsize=1.3;,charthick=2.0  
                        ;if ct_hdnpts ne 0 then begin ;Hidden data points are present 
                            
                        ;Locating the hidden spectrum and filter data points     
8fbdb4c3   Ilyes Choubani   Fixed minor 0/0 e...
1712
                       
74103816   Ilyes Choubani   small update
1713
                        if ct_hdnpts NE 0 then begin
0068116a   Ilyes Choubani   General update + ...
1714
1715
1716
1717
                            idx_filt_hdn_pstv = where(((*(*!dustem_show).qsed).filt_names)(idx_rmv_sed) NE 'SPECTRUM' and ((*(*!dustem_show).qsed).values)(idx_rmv_sed) gt 0,ct_filt_hdn_pstv)
                            idx_spec_hdn_pstv = where(((*(*!dustem_show).qsed).filt_names)(idx_rmv_sed) EQ 'SPECTRUM' and ((*(*!dustem_show).qsed).values)(idx_rmv_sed) gt 0,ct_spec_hdn_pstv)
                            idx_filt_hdn_ngtv = where(((*(*!dustem_show).qsed).filt_names)(idx_rmv_sed) NE 'SPECTRUM' and ((*(*!dustem_show).qsed).values)(idx_rmv_sed) lt 0,ct_filt_hdn_ngtv)
                            idx_spec_hdn_ngtv = where(((*(*!dustem_show).qsed).filt_names)(idx_rmv_sed) EQ 'SPECTRUM' and ((*(*!dustem_show).qsed).values)(idx_rmv_sed) lt 0,ct_spec_hdn_ngtv)
67bd858a   Ilyes Choubani   Replication of th...
1718
1719
1720
1721
1722
1723
1724
                        endif
                        
                        
                        if keyword_set(positive_only) then begin
                            ;stop
                            if testpstv ne 0 then begin
                            ;stop
74103816   Ilyes Choubani   small update
1725
1726
1727
1728
1729
                                plotsym, 0
                                
                                
                                if ct_spec ne 0 then begin
                                
0068116a   Ilyes Choubani   General update + ...
1730
1731
1732
1733
                                    rms=3.*((*(*!dustem_data).qsed).sigma)(idx_spec)/2.
                                    ;dustem_plot_mlog,((*(*!dustem_data).qsed).wav)(idx_spec),-((*(*!dustem_data).qsed).values)(idx_spec),ppositions=position,charsize=1.15,color='Dodger Blue',psym=16,syms=0.8,xs=1,xr=xr,/nodata,noerase=1,/positive_only,xtickformat='(A1)',xtit='',/xlog,/ylog,yr=yr;,ytickformat='(A1)'
                                    dustem_plot_mlog,((*(*!dustem_data).qsed).wav)(idx_spec),((*(*!dustem_data).qsed).values)(idx_spec),ppositions=position,charsize=1.15,color='Dodger Blue',psym=16,syms=0.8,xs=1,xr=xr,noerase=1,/positive_only,xtickformat='(A1)',xtit='',/xlog,/ylog,yr=yr;,ytickformat='(A1)'
                                    dustem_plot_mlog,((*(*!dustem_data).qsed).wav)(idx_spec),((*(*!dustem_data).qsed).values)(idx_spec),ppositions=position,color='Dodger Blue',/positive_only,noerase=1,/overplot,rms=rms,xtit='',charsize=1.15,xtickformat='(A1)',xs=1,psym=16,syms=0.8,xr=xr,/xlog,/ylog,yr=yr,ytickformat='(A1)'     
74103816   Ilyes Choubani   small update
1734
1735
1736
1737
1738
                                 
                                endif
                                
                                if ct_filt ne 0 then begin
                                    
0068116a   Ilyes Choubani   General update + ...
1739
1740
1741
1742
1743
                                    rms=3.*((*(*!dustem_data).qsed).sigma)(idx_filt)/2.
                                   ; dustem_plot_mlog,((*(*!dustem_data).qsed).wav)(idx_filt),-1.*((*(*!dustem_data).qsed).values)(idx_filt),ppositions=position,charsize=1.15,color='Dodger Blue',psym=16,syms=0.8,xs=1,xr=xr,/nodata,noerase=1,/negative_only,xtickformat='(A1)',xtit='',/xlog,/ylog,yr=yr;,ytickformat='(A1)'
                                    if ct_spec ne 0 then dustem_plot_mlog,((*(*!dustem_data).qsed).wav)(idx_filt),((*(*!dustem_data).qsed).values)(idx_filt),ppositions=position,charsize=1.15,color='Dodger Blue',psym=16,syms=0.8,xs=1,xr=xr,noerase=1,/positive_only,xtickformat='(A1)',xtit='',/xlog,/ylog,yr=yr,ytickformat='(A1)';,ytickformat='(A1)'
                                    if ct_spec eq 0 then dustem_plot_mlog,((*(*!dustem_data).qsed).wav)(idx_filt),((*(*!dustem_data).qsed).values)(idx_filt),ppositions=position,charsize=1.15,color='Dodger Blue',psym=16,syms=0.8,xs=1,xr=xr,noerase=1,/positive_only,xtickformat='(A1)',xtit='',/xlog,/ylog,yr=yr;,ytickformat='(A1)'
                                    dustem_plot_mlog,((*(*!dustem_data).qsed).wav)(idx_filt),((*(*!dustem_data).qsed).values)(idx_filt),ppositions=position,color='Dodger Blue',/positive_only,noerase=1,/overplot,rms=rms,xtit='',charsize=1.15,xtickformat='(A1)',xs=1,psym=16,syms=0.8,xr=xr,/xlog,/ylog,yr=yr,ytickformat='(A1)'
74103816   Ilyes Choubani   small update
1744
1745
                                        
                                endif
67bd858a   Ilyes Choubani   Replication of th...
1746
                                
74103816   Ilyes Choubani   small update
1747
1748
                                
                                if ct_hdnpts NE 0 then begin
67bd858a   Ilyes Choubani   Replication of th...
1749
1750
                                
                                    if ct_spec_hdn_pstv ne 0 then begin
0068116a   Ilyes Choubani   General update + ...
1751
1752
1753
                                        xx = (((*(*!dustem_show).qsed).wav)[idx_rmv_sed])(idx_spec_hdn_pstv)
                                        yy = (((*(*!dustem_show).qsed).values)[idx_rmv_sed])(idx_spec_hdn_pstv)
                                        rms=3.*(((*(*!dustem_show).qsed).sigma)[idx_rmv_sed])(idx_spec_hdn_pstv)/2.
67bd858a   Ilyes Choubani   Replication of th...
1754
                                        
74103816   Ilyes Choubani   small update
1755
1756
                                        dustem_plot_mlog,xx,yy,ppositions=position,/positive_only,xs=1,noerase=1,charsize=1.15,xtickformat='(A1)',/overplot,xr=xr,color='Black',psym=16,syms=0.8,/xlog,/ylog,yr=yr,ytickformat='(A1)'  
                                        dustem_plot_mlog,xx,yy,ppositions=position,/positive_only,noerase=1,color='Black',/overplot,rms=rms,yr=yr,xtickformat='(A1)',xr=xr,xs=1,/xlog,/ylog,ytickformat='(A1)'  ;,psym=8,syms=0.8
67bd858a   Ilyes Choubani   Replication of th...
1757
1758
1759
1760
1761
                                    
                                    endif 
                                    
                                    if ct_filt_hdn_pstv ne 0 then begin
                                    
0068116a   Ilyes Choubani   General update + ...
1762
1763
1764
                                        xx = (((*(*!dustem_show).qsed).wav)[idx_rmv_sed])(idx_filt_hdn_pstv)
                                        yy = (((*(*!dustem_show).qsed).values)[idx_rmv_sed])(idx_filt_hdn_pstv)
                                        rms=3.*(((*(*!dustem_show).qsed).sigma)[idx_rmv_sed])(idx_filt_hdn_pstv)/2.
67bd858a   Ilyes Choubani   Replication of th...
1765
                                        
74103816   Ilyes Choubani   small update
1766
1767
                                        dustem_plot_mlog,xx,yy,ppositions=position,/positive_only,xs=1,noerase=1,charsize=1.15,/overplot,xtickformat='(A1)',xr=xr,color='Black',psym=16,syms=0.8,/xlog,/ylog,yr=yr,ytickformat='(A1)'     
                                        dustem_plot_mlog,xx,yy,ppositions=position,/positive_only,xs=1,noerase=1,color='Black',/overplot,rms=rms,xr=xr,yr=yr,xtickformat='(A1)',/xlog,/ylog,ytickformat='(A1)'  ;,psym=8,syms=0.8
67bd858a   Ilyes Choubani   Replication of th...
1768
1769
1770
1771
1772
1773
                                    
                                    endif
                                    
                                endif
                                
                                
74103816   Ilyes Choubani   small update
1774
                            endif else begin
67bd858a   Ilyes Choubani   Replication of th...
1775
                                
67bd858a   Ilyes Choubani   Replication of th...
1776
                                
1bc09467   Ilyes Choubani   fixed issue with ...
1777
                            
0068116a   Ilyes Choubani   General update + ...
1778
                                if ct_spec ne 0 then dustem_plot_mlog,((*(*!dustem_data).qsed).wav)(idx_spec),-((*(*!dustem_data).qsed).values)(idx_spec),ppositions=position,charsize=1.15,/nodata,color='Dodger Blue',psym=16,syms=0.8,xs=1,xr=xr,noerase=1,/positive_only,xtickformat='(A1)',xtit='',/xlog,/ylog,yr=yr;,ytickformat='(A1)'
1bc09467   Ilyes Choubani   fixed issue with ...
1779
                                    
67bd858a   Ilyes Choubani   Replication of th...
1780
                                
0068116a   Ilyes Choubani   General update + ...
1781
                                if ct_filt ne 0 and ct_spec eq 0 then  dustem_plot_mlog,((*(*!dustem_data).qsed).wav)(idx_filt),-((*(*!dustem_data).qsed).values)(idx_filt),/nodata,ppositions=position,charsize=1.15,color='Dodger Blue',psym=16,syms=0.8,xs=1,xr=xr,noerase=1,/positive_only,xtickformat='(A1)',xtit='',/xlog,/ylog,yr=yr;,ytickformat='(A1)'
f2caf3f1   Ilyes Choubani   Debugging some er...
1782
                                   
74103816   Ilyes Choubani   small update
1783
1784
1785
1786
                                
                                if ct_hdnpts NE 0 then begin
                                
                                    if ct_spec_hdn_pstv ne 0 then begin
0068116a   Ilyes Choubani   General update + ...
1787
1788
1789
                                        xx = (((*(*!dustem_show).qsed).wav)[idx_rmv_sed])(idx_spec_hdn_pstv)
                                        yy = (((*(*!dustem_show).qsed).values)[idx_rmv_sed])(idx_spec_hdn_pstv)
                                        rms=3.*(((*(*!dustem_show).qsed).sigma)[idx_rmv_sed])(idx_spec_hdn_pstv)/2.
74103816   Ilyes Choubani   small update
1790
1791
1792
1793
1794
1795
1796
1797
                                        
                                        dustem_plot_mlog,xx,yy,ppositions=position,/positive_only,xs=1,noerase=1,charsize=1.15,xtickformat='(A1)',/overplot,xr=xr,color='Black',psym=16,syms=0.8,/xlog,/ylog,yr=yr,ytickformat='(A1)'  
                                        dustem_plot_mlog,xx,yy,ppositions=position,/positive_only,noerase=1,color='Black',/overplot,rms=rms,yr=yr,xtickformat='(A1)',xr=xr,xs=1,/xlog,/ylog,ytickformat='(A1)'  ;,psym=8,syms=0.8
                                    
                                    endif 
                                    
                                    if ct_filt_hdn_pstv ne 0 then begin
                                    
0068116a   Ilyes Choubani   General update + ...
1798
1799
1800
                                        xx = (((*(*!dustem_show).qsed).wav)[idx_rmv_sed])(idx_filt_hdn_pstv)
                                        yy = (((*(*!dustem_show).qsed).values)[idx_rmv_sed])(idx_filt_hdn_pstv)
                                        rms=3.*(((*(*!dustem_show).qsed).sigma)[idx_rmv_sed])(idx_filt_hdn_pstv)/2.
74103816   Ilyes Choubani   small update
1801
1802
1803
1804
1805
1806
1807
1808
                                        
                                        dustem_plot_mlog,xx,yy,ppositions=position,/positive_only,xs=1,noerase=1,charsize=1.15,/overplot,xtickformat='(A1)',xr=xr,color='Black',psym=16,syms=0.8,/xlog,/ylog,yr=yr,ytickformat='(A1)'     
                                        dustem_plot_mlog,xx,yy,ppositions=position,/positive_only,xs=1,noerase=1,color='Black',/overplot,rms=rms,xr=xr,yr=yr,xtickformat='(A1)',/xlog,/ylog,ytickformat='(A1)'  ;,psym=8,syms=0.8
                                    
                                    endif
                                    
                                endif
                                
67bd858a   Ilyes Choubani   Replication of th...
1809
1810
1811
1812
1813
1814
1815
1816
1817
1818
                            endelse                           
                        
                        endif 
                        
                        
                        if keyword_set(negative_only) then begin
                            
                            if testngtv ne 0 then begin
                                 
                                 ;plotsym, 0
67bd858a   Ilyes Choubani   Replication of th...
1819
                                
67bd858a   Ilyes Choubani   Replication of th...
1820
1821
                                 if ct_spec ne 0 then begin
                                 
0068116a   Ilyes Choubani   General update + ...
1822
1823
1824
1825
                                     rms=3.*((*(*!dustem_data).qsed).sigma)(idx_spec)/2.
                                     ;dustem_plot_mlog,((*(*!dustem_data).qsed).wav)(idx_spec),-((*(*!dustem_data).qsed).values)(idx_spec),ppositions=position,charsize=1.15,color='Dodger Blue',psym=16,syms=0.8,xs=1,xr=xr,/nodata,noerase=1,/negative_only,xtickformat='(A1)',xtit='',/xlog,/ylog,yr=yr;,ytickformat='(A1)'
                                    ; if ct_spec_hdn_ngtv ne 0 then dustem_plot_mlog,((*(*!dustem_data).qsed).wav)(idx_spec),((*(*!dustem_data).qsed).values)(idx_spec),ppositions=position,/overplot,charsize=1.15,color='Dodger Blue',psym=16,syms=0.8,xs=1,xr=xr,noerase=1,/negative_only,xtickformat='(A1)',xtit='',/xlog,/ylog,yr=yr else begin
                                         dustem_plot_mlog,((*(*!dustem_data).qsed).wav)(idx_spec),((*(*!dustem_data).qsed).values)(idx_spec),ppositions=position,charsize=1.15,color='Dodger Blue',psym=16,syms=0.8,xs=1,xr=xr,noerase=1,/negative_only,xtickformat='(A1)',xtit='',/xlog,/ylog,yr=yr;,ytickformat='(A1)'
67bd858a   Ilyes Choubani   Replication of th...
1826
                                     ;endelse;,ytickformat='(A1)'
0068116a   Ilyes Choubani   General update + ...
1827
                                     dustem_plot_mlog,((*(*!dustem_data).qsed).wav)(idx_spec),((*(*!dustem_data).qsed).values)(idx_spec),ppositions=position,color='Dodger Blue',/negative_only,noerase=1,/overplot,rms=rms,xtit='',charsize=1.15,xtickformat='(A1)',xs=1,xr=xr,/xlog,/ylog,yr=yr,ytickformat='(A1)';,psym=16,syms=0.8     
67bd858a   Ilyes Choubani   Replication of th...
1828
1829
1830
1831
1832
                                  
                                 endif
                                 
                                 if ct_filt ne 0 then begin
                                     
0068116a   Ilyes Choubani   General update + ...
1833
1834
1835
1836
1837
                                     rms=3.*((*(*!dustem_data).qsed).sigma)(idx_filt)/2.
                                    ; dustem_plot_mlog,((*(*!dustem_data).qsed).wav)(idx_filt),-1.*((*(*!dustem_data).qsed).values)(idx_filt),ppositions=position,charsize=1.15,color='Dodger Blue',psym=16,syms=0.8,xs=1,xr=xr,/nodata,noerase=1,/negative_only,xtickformat='(A1)',xtit='',/xlog,/ylog,yr=yr;,ytickformat='(A1)'
                                     ;if ct_filt_hdn_ngtv ne 0 then  dustem_plot_mlog,((*(*!dustem_data).qsed).wav)(idx_filt),((*(*!dustem_data).qsed).values)(idx_filt),ppositions=position,charsize=1.15,color='Dodger Blue',/overplot,psym=16,syms=0.8,xs=1,xr=xr,noerase=1,/negative_only,xtickformat='(A1)',xtit='',/xlog,/ylog,yr=yr else begin
                                     if ct_spec ne 0 then dustem_plot_mlog,((*(*!dustem_data).qsed).wav)(idx_filt),((*(*!dustem_data).qsed).values)(idx_filt),ppositions=position,charsize=1.15,color='Dodger Blue',psym=16,syms=0.8,xs=1,xr=xr,noerase=1,/negative_only,xtickformat='(A1)',xtit='',/xlog,/ylog,yr=yr,ytickformat='(A1)'
                                     if ct_spec eq 0 then dustem_plot_mlog,((*(*!dustem_data).qsed).wav)(idx_filt),((*(*!dustem_data).qsed).values)(idx_filt),ppositions=position,charsize=1.15,color='Dodger Blue',psym=16,syms=0.8,xs=1,xr=xr,noerase=1,/negative_only,xtickformat='(A1)',xtit='',/xlog,/ylog,yr=yr
67bd858a   Ilyes Choubani   Replication of th...
1838
1839
                                     ;endelse ;,ytickformat='(A1)'
                                     
0068116a   Ilyes Choubani   General update + ...
1840
                                     dustem_plot_mlog,((*(*!dustem_data).qsed).wav)(idx_filt),((*(*!dustem_data).qsed).values)(idx_filt),ppositions=position,color='Dodger Blue',/negative_only,noerase=1,/overplot,rms=rms,xtit='',charsize=1.15,xtickformat='(A1)',xs=1,xr=xr,/xlog,/ylog,yr=yr,ytickformat='(A1)'
67bd858a   Ilyes Choubani   Replication of th...
1841
1842
                                         
                                 endif 
74103816   Ilyes Choubani   small update
1843
1844
1845
1846
                                 
                                 if ct_hdnpts NE 0 then begin
                                 
                                     if ct_spec_hdn_ngtv ne 0 then begin
0068116a   Ilyes Choubani   General update + ...
1847
1848
1849
                                         xx = (((*(*!dustem_show).qsed).wav)[idx_rmv_sed])(idx_spec_hdn_ngtv)
                                         yy = (((*(*!dustem_show).qsed).values)[idx_rmv_sed])(idx_spec_hdn_ngtv)
                                         rms=3.*(((*(*!dustem_show).qsed).sigma)[idx_rmv_sed])(idx_spec_hdn_ngtv)/2.
74103816   Ilyes Choubani   small update
1850
1851
1852
1853
1854
1855
1856
1857
                                         
                                         dustem_plot_mlog,xx,yy,ppositions=position,/negative_only,xs=1,noerase=1,charsize=1.15,/overplot,xtickformat='(A1)',xr=xr,color='Black',psym=16,syms=0.8,/xlog,/ylog,yr=yr,ytickformat='(A1)'
                                         dustem_plot_mlog,xx,yy,ppositions=position,/negative_only,noerase=1,color='Black',/overplot,rms=rms,yr=yr,xtickformat='(A1)',xr=xr,xs=1,/xlog,/ylog,ytickformat='(A1)';,psym=8,syms=0.8
                                     
                                     endif 
                                     
                                     if ct_filt_hdn_ngtv ne 0 then begin
                                     
0068116a   Ilyes Choubani   General update + ...
1858
1859
1860
                                         xx = (((*(*!dustem_show).qsed).wav)[idx_rmv_sed])(idx_filt_hdn_ngtv)
                                         yy = (((*(*!dustem_show).qsed).values)[idx_rmv_sed])(idx_filt_hdn_ngtv)
                                         rms=3.*(((*(*!dustem_show).qsed).sigma)[idx_rmv_sed])(idx_filt_hdn_ngtv)/2.
74103816   Ilyes Choubani   small update
1861
1862
1863
1864
1865
1866
1867
1868
                                         
                                         dustem_plot_mlog,xx,yy,ppositions=position,/negative_only,xs=1,noerase=1,charsize=1.15,/overplot,xtickformat='(A1)',xr=xr,color='Black',psym=16,syms=0.8,/xlog,/ylog,yr=yr ,ytickformat='(A1)'  
                                         dustem_plot_mlog,xx,yy,ppositions=position,/negative_only,xs=1,noerase=1,color='Black',/overplot,rms=rms,xr=xr,yr=yr,xtickformat='(A1)',/xlog,/ylog,ytickformat='(A1)';,psym=8,syms=0.8
                                     
                                     endif
                                
                                 endif

67bd858a   Ilyes Choubani   Replication of th...
1869
1870
                            
                            endif else begin
74103816   Ilyes Choubani   small update
1871
1872
                                
                                
0068116a   Ilyes Choubani   General update + ...
1873
                                if ct_spec ne 0 then dustem_plot_mlog,((*(*!dustem_data).qsed).wav)(idx_spec),-((*(*!dustem_data).qsed).values)(idx_spec),ppositions=position,charsize=1.15,/nodata,color='Dodger Blue',psym=16,syms=0.8,xs=1,xr=xr,noerase=1,/negative_only,xtickformat='(A1)',xtit='',/xlog,/ylog,yr=yr;,ytickformat='(A1)'
1bc09467   Ilyes Choubani   fixed issue with ...
1874
                                    
e0d00de0   Ilyes Choubani   removing stops
1875
                                
0068116a   Ilyes Choubani   General update + ...
1876
                                if ct_filt ne 0 and ct_spec eq 0 then  dustem_plot_mlog,((*(*!dustem_data).qsed).wav)(idx_filt),-((*(*!dustem_data).qsed).values)(idx_filt),/nodata,ppositions=position,charsize=1.15,color='Dodger Blue',psym=16,syms=0.8,xs=1,xr=xr,noerase=1,/negative_only,xtickformat='(A1)',xtit='',/xlog,/ylog,yr=yr;,ytickformat='(A1)'
74103816   Ilyes Choubani   small update
1877
1878
1879
1880
                                
                                if ct_hdnpts NE 0 then begin
                                
                                    if ct_spec_hdn_ngtv ne 0 then begin
0068116a   Ilyes Choubani   General update + ...
1881
1882
1883
                                        xx = (((*(*!dustem_show).qsed).wav)[idx_rmv_sed])(idx_spec_hdn_ngtv)
                                        yy = (((*(*!dustem_show).qsed).values)[idx_rmv_sed])(idx_spec_hdn_ngtv)
                                        rms=3.*(((*(*!dustem_show).qsed).sigma)[idx_rmv_sed])(idx_spec_hdn_ngtv)/2.
74103816   Ilyes Choubani   small update
1884
1885
1886
1887
1888
1889
1890
1891
                                        
                                        dustem_plot_mlog,xx,yy,ppositions=position,/negative_only,xs=1,noerase=1,charsize=1.15,/overplot,xtickformat='(A1)',xr=xr,color='Black',psym=16,syms=0.8,/xlog,/ylog,yr=yr,ytickformat='(A1)'
                                        dustem_plot_mlog,xx,yy,ppositions=position,/negative_only,noerase=1,color='Black',/overplot,rms=rms,yr=yr,xtickformat='(A1)',xr=xr,xs=1,/xlog,/ylog,ytickformat='(A1)';,psym=8,syms=0.8
                                    
                                    endif 
                                    
                                    if ct_filt_hdn_ngtv ne 0 then begin
                                    
0068116a   Ilyes Choubani   General update + ...
1892
1893
1894
                                        xx = (((*(*!dustem_show).qsed).wav)[idx_rmv_sed])(idx_filt_hdn_ngtv)
                                        yy = (((*(*!dustem_show).qsed).values)[idx_rmv_sed])(idx_filt_hdn_ngtv)
                                        rms=3.*(((*(*!dustem_show).qsed).sigma)[idx_rmv_sed])(idx_filt_hdn_ngtv)/2.
74103816   Ilyes Choubani   small update
1895
1896
1897
1898
1899
1900
1901
                                        
                                        dustem_plot_mlog,xx,yy,ppositions=position,/negative_only,xs=1,noerase=1,charsize=1.15,/overplot,xtickformat='(A1)',xr=xr,color='Black',psym=16,syms=0.8,/xlog,/ylog,yr=yr ,ytickformat='(A1)'  
                                        dustem_plot_mlog,xx,yy,ppositions=position,/negative_only,xs=1,noerase=1,color='Black',/overplot,rms=rms,xr=xr,yr=yr,xtickformat='(A1)',/xlog,/ylog,ytickformat='(A1)';,psym=8,syms=0.8
                                    
                                    endif
                                    
                                    endif
f2caf3f1   Ilyes Choubani   Debugging some er...
1902
                                  
67bd858a   Ilyes Choubani   Replication of th...
1903
1904
1905
1906
1907
1908
1909
1910
1911
1912
1913
1914
1915
1916
1917
1918
1919
                            endelse
                            ;stop
                        endif
                        
                    
                    endelse 
                
                
                
                endelse 
            
            endelse ;

        
        END
        
        'USED': begin
96a72c8b   Ilyes Choubani   seperating xrange...
1920
            
4b745987   Ilyes Choubani   minor update
1921
1922
1923
1924
1925
1926
            IF ct_m NE 0 then begin
            
                xr=xr_m
                yr=yr_m
                
            ENDIF
96a72c8b   Ilyes Choubani   seperating xrange...
1927
            
1bc09467   Ilyes Choubani   fixed issue with ...
1928
1929
1930
1931
1932
            vectw=DINDGEN(1001)*(alog10(1E7) - alog10(1E5))/(1000 - 1L) + alog10(1E5)
            vectw=10^vectw[1:*]
            vectw=[wavs,vectw]
            vectx=vectw*0+1
        
67bd858a   Ilyes Choubani   Replication of th...
1933
1934
            ;SIGN-RELATED PARAMETERS/LOOPS HERE?
            ;negative & positive values regardless of data type (SPECTRUM or FILTER data points)
0068116a   Ilyes Choubani   General update + ...
1935
1936
            varvar=where((*(*!dustem_data).used).values LT 0, testngtv)
            varvar=where((*(*!dustem_data).used).values GT 0, testpstv)
67bd858a   Ilyes Choubani   Replication of th...
1937
            ;stop
0068116a   Ilyes Choubani   General update + ...
1938
1939
            idx_filt=where((*(*!dustem_data).used).filt_names NE 'SPECTRUM', ct_filt)
            idx_spec=where((*(*!dustem_data).used).filt_names EQ 'SPECTRUM' , ct_spec)
67bd858a   Ilyes Choubani   Replication of th...
1940
            
67bd858a   Ilyes Choubani   Replication of th...
1941
            ;Locating all the hidden data points (spectrum+filter)
0068116a   Ilyes Choubani   General update + ...
1942
            match2,((*(*!dustem_data).used).wav),((*(*!dustem_show).used).wav),show_sedpts,fit_sedpts ;only show_sedpts is needed
74103816   Ilyes Choubani   small update
1943
            idx_rmv_sed=where(fit_sedpts eq -1, ct_hdnpts) ; indices of the points to hide
67bd858a   Ilyes Choubani   Replication of th...
1944
            
67bd858a   Ilyes Choubani   Replication of th...
1945
1946
1947
1948
1949
1950
1951
1952
            ;#1) get the plotting keywords (pertaining to each data set) @here when the _extra structure is ready
            
            if keyword_set(nodata) then begin ;when the data is not present
            
                if keyword_set(norm) then begin ;normalized plot
                    
                    xtit=textoidl('\lambda (\mum)')
                    if !run_pol then xtit = ''
1bc09467   Ilyes Choubani   fixed issue with ...
1953
                    cgplot,vectw,vectx,/xlog,/ys,xs=1,pos=position,noerase=1,xtickformat='(A1)',color='Black',xr=xr,xtit=xtit,yr=[0.0,2.0],yticks=2,ymino=2,xticklen=0.1,ytickformat='(F6.2)',charsize=1.0
67bd858a   Ilyes Choubani   Replication of th...
1954
1955
1956
1957
1958
1959
1960
1961
1962
1963
1964
1965
1966
1967
1968
1969
1970
1971
1972
1973
                    xyouts,pospltxt[0],pospltxt[1],textoidl('norm'),color=0,/normal,charsize=1.1                        
                
                endif else begin ;normal plot
                    
                    cgplot,wavs,wavs,/nodata,/ylog,/xlog,/ys,xs=1,pos=position,noerase=1,charsize=1.15,xtickformat='(A1)',color='Powder Blue',xr=xr,xtit='',yr=yr,psym=8,syms=0.8  
                    ;cgaxis, xaxis=1 ,xlog=1 ,xrange=((!const.c*1E6/xr)*1E-9),charsize=1.15,title=textoidl('\nu (GHz)'),xticklen=0.05,xminor=10
                    xyouts,pospltxt[0],pospltxt[1],textoidl('U_{\nu} (MJy/sr)'),color=0,/normal,charsize=1.3;,charthick=2.0
                  
                endelse  
                
            
            endif else begin ;when the data is present 
                
                if keyword_set(norm) then begin 
                    
                    if keyword_set(refresh) then begin ;The data points in the plot that are being refreshed 
                        
                        ;MAJOR LOOP OVER THE SING??? - YES BECAUSE YOU NEED TO KNOW WHICH ONE IS THE 
                
                        IF ct_spec NE 0 THEN BEGIN
0068116a   Ilyes Choubani   General update + ...
1974
                            xx=((*(*!dustem_data).used).wav)[idx_spec]
67bd858a   Ilyes Choubani   Replication of th...
1975
                            yy=dustem_interp[idx_spec]
0068116a   Ilyes Choubani   General update + ...
1976
                            rms=3.*((*(*!dustem_data).used).sigma)(idx_spec)/2.
f2caf3f1   Ilyes Choubani   Debugging some er...
1977
1978
                            indzero = where(yy NE 0, ct_zero)
                            IF ct_zero NE 0 THEN BEGIN
0068116a   Ilyes Choubani   General update + ...
1979
1980
                                cgoplot,xx[indzero],(((*(*!dustem_data).used).values)(idx_spec))[indzero]/yy[indzero],pos=position,psym=16,color='Powder Blue',syms=0.8,noerase=1 
                                cgerrplot,(((*(*!dustem_data).used).wav)(idx_spec))[indzero],((((*(*!dustem_data).used).values)[idx_spec])[indzero]-rms[indzero])/yy[indzero],((((*(*!dustem_data).used).values)[idx_spec])[indzero]+rms[indzero])/yy[indzero],color='Powder Blue'
f2caf3f1   Ilyes Choubani   Debugging some er...
1981
                            ENDIF
67bd858a   Ilyes Choubani   Replication of th...
1982
1983
1984
                        ENDIF
                        
                        IF ct_filt NE 0 THEN BEGIN
8fbdb4c3   Ilyes Choubani   Fixed minor 0/0 e...
1985
                            
0068116a   Ilyes Choubani   General update + ...
1986
                            xx=((*(*!dustem_data).used).wav)[idx_filt]
67bd858a   Ilyes Choubani   Replication of th...
1987
                            yy=dustem_interp[idx_filt]
0068116a   Ilyes Choubani   General update + ...
1988
                            rms=3.*((*(*!dustem_data).used).sigma)(idx_filt)/2. 
f2caf3f1   Ilyes Choubani   Debugging some er...
1989
1990
                            indzero = where(yy NE 0, ct_zero)
                            IF ct_zero NE 0 THEN BEGIN
0068116a   Ilyes Choubani   General update + ...
1991
1992
                                cgoplot,xx[indzero],(((*(*!dustem_data).used).values)(idx_filt))[indzero]/yy[indzero],pos=position,psym=16,color='Dodger Blue',syms=0.8,noerase=1 
                                cgerrplot,(((*(*!dustem_data).used).wav)(idx_filt))[indzero],((((*(*!dustem_data).used).values)[idx_filt])[indzero]-rms[indzero])/yy[indzero],((((*(*!dustem_data).used).values)[idx_filt])[indzero]+rms[indzero])/yy[indzero],color='Dodger Blue' 
f2caf3f1   Ilyes Choubani   Debugging some er...
1993
                            ENDIF
67bd858a   Ilyes Choubani   Replication of th...
1994
1995
1996
1997
                        ENDIF
      
                        
                    endif else begin ;The data points in the plot that remain unchanged
1bc09467   Ilyes Choubani   fixed issue with ...
1998
                        
67bd858a   Ilyes Choubani   Replication of th...
1999
2000
                        xtit=textoidl('\lambda (\mum)')
                        ;if !run_pol then xtit = ''
afde94a3   Ilyes Choubani   general update
2001
                        cgplot,vectw,vectx,/xlog,/ys,xs=1,pos=position,noerase=1,color='Black',xr=xr,xtit=xtit,yr=[0.0,2.0],yticks=2,ymino=2,xticklen=0.1,ytickformat='(F6.2)',charsize=1.0
67bd858a   Ilyes Choubani   Replication of th...
2002
2003
2004
2005
2006
2007
2008
2009
2010
2011
2012
2013
2014
2015
2016
2017
2018
2019
2020
2021
                        xyouts,pospltxt-[0],pospltxt[1],textoidl('norm'),color=0,/normal,charsize=1.1
                    
                    endelse
                    
                
                endif else begin ; normal plot - STOPPED HERE FOR used
                              
                    if keyword_set(refresh) then begin ;The data points in the plot are being refreshed
                        
                        if keyword_set(positive_only) then begin
     
                            if testpstv ne 0 then begin
                                ;stop
                                FOR i=0L,Ngrains-1 DO BEGIN
                                    
                                    testneq = where(st.polsed.(i+1) ne 0,countneq)
                                    
                                    if countneq ne 0 then begin 
                                        vecfin = st.polsed.(i+1)*0.0 ;em_tot can be used here right? 
                                        
07372e26   Ilyes Choubani   Corrected huge pl...
2022
                                        vecfin[testneq] = ((st.polsed.(i+1))[testneq])/((st.sed.(i+1))[testneq]);extra_spec[testneq];(st.sed.em_tot)[testneq];(st.sed.(i+1))[testneq];*fact;(st.sed.(i+1))[testneq]
67bd858a   Ilyes Choubani   Replication of th...
2023
2024
2025
2026
2027
2028
2029
2030
2031
2032
2033
2034
2035
2036
                                            
                                        polar_ippsi2iqu,st.sed.(i+1)*fact,specqgrain,specugrain,vecfin,replicate(!dustem_psi,n_elements(vecfin)) ;temporary solution
                                        ;dustem_plot_mlog,st.polsed.wav,specqgrain,ppositions=position,/overplot,noerase=1,color=use_cols[i],xr=xr,/xlog 
                                        dustem_plot_mlog,st.polsed.wav,specugrain,ppositions=position,/positive_only,/overplot,noerase=1,color=use_cols[i],xr=xr,/xlog,/ylog,ytickformat='(A1)',yr=yr
                                    endif 
                                    ;stop
                                ENDFOR
                                ;stop
                                for i=0L,n_plgns-1 do begin
                                    
                                    IF isa((*!dustem_plugin).(0).spec) THEN BEGIN
                                    
                                        IF total(strsplit((*(*!dustem_plugin).(i).scope),'+',/extract) EQ 'ADD_POLSED') THEN begin
                                            
8fbdb4c3   Ilyes Choubani   Fixed minor 0/0 e...
2037
                                            
67bd858a   Ilyes Choubani   Replication of th...
2038
2039
2040
2041
2042
2043
2044
2045
                                            dustem_plot_mlog,st.polsed.wav,(*(*!dustem_plugin).(i).spec)[*,2],ppositions=position,/positive_only,/overplot,noerase=1, color=clrs_plgns[i], linestyle=2 ,xr=xr,/xlog,/ylog,ytickformat='(A1)',yr=yr      
                                        ENDIF
                                        
                                    ENDIF
                                    
                                endfor
                                
                                IF ct_spec NE 0 THEN BEGIN
0068116a   Ilyes Choubani   General update + ...
2046
                                    xx=((*(*!dustem_data).used).wav)[idx_spec]
67bd858a   Ilyes Choubani   Replication of th...
2047
2048
2049
2050
2051
2052
                                    yy=dustem_interp[idx_spec]
                                    ;dustem_plot_mlog,xx,yy,ppositions=position,/overplot, noerase=1, color='red',psym=7,syms=2,xr=xr,/xlog
                                    dustem_plot_mlog,xx,yy,ppositions=position,/positive_only, /overplot, noerase=1, color='Indian Red',psym=7,syms=2,xr=xr,/xlog,/ylog,ytickformat='(A1)',yr=yr 
                                ENDIF
                                
                                IF ct_filt NE 0 THEN BEGIN
0068116a   Ilyes Choubani   General update + ...
2053
                                    xx=((*(*!dustem_data).used).wav)[idx_filt]
67bd858a   Ilyes Choubani   Replication of th...
2054
2055
2056
2057
2058
2059
2060
2061
2062
2063
2064
2065
2066
2067
2068
2069
2070
2071
2072
2073
2074
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2076
                                    yy=dustem_interp[idx_filt]
                                    ;dustem_plot_mlog,xx,yy,ppositions=position, /overplot, noerase=1, color='red',psym=6,syms=2,xr=xr,/xlog
                                    dustem_plot_mlog,xx,yy,ppositions=position,/positive_only, /overplot, noerase=1, color='red',psym=6,syms=2,xr=xr,/xlog,/ylog,ytickformat='(A1)',yr=yr
                                ENDIF
                                
                                dustem_plot_mlog,st.polsed.wav,dustem_spec,ppositions=position,/positive_only,/overplot,noerase=1,xr=xr,/xlog,/ylog,ytickformat='(A1)',yr=yr                                    
                            
                            endif
                                    
                        
                        endif
                        
                        
                        if keyword_set(negative_only) then begin
     
                            if testngtv ne 0 then begin
                            
                                ;Plotting of the spectra of the dust species
                                FOR i=0L,Ngrains-1 DO BEGIN
                                    testneq = where(st.polsed.(i+1) ne 0,countneq)
                                    if countneq ne 0 then begin
                                        vecfin = st.polsed.(i+1)*0.0 ;em_tot can be used here right? 
                                        
07372e26   Ilyes Choubani   Corrected huge pl...
2077
                                        vecfin[testneq] = ((st.polsed.(i+1))[testneq])/((st.sed.(i+1))[testneq]);extra_spec[testneq];(st.sed.em_tot)[testneq];(st.sed.(i+1))[testneq];*fact;(st.sed.(i+1))[testneq]
67bd858a   Ilyes Choubani   Replication of th...
2078
2079
                                        
                                        polar_ippsi2iqu,st.sed.(i+1)*fact,specqgrain,specugrain,vecfin,replicate(!dustem_psi,n_elements(vecfin)) ;temporary solution
8fbdb4c3   Ilyes Choubani   Fixed minor 0/0 e...
2080
                                         
67bd858a   Ilyes Choubani   Replication of th...
2081
2082
2083
2084
2085
2086
2087
2088
2089
2090
2091
2092
2093
2094
2095
                                        dustem_plot_mlog,st.polsed.wav,specugrain,ppositions=position,/negative_only,/overplot,noerase=1,color=use_cols[i],xr=xr,/xlog,/ylog,ytickformat='(A1)',yr=yr
                                    endif    
                                ENDFOR
                                ;Plotting of the plugins
                                FOR i=0L,n_plgns-1 do begin
                                    IF isa((*!dustem_plugin).(0).spec) THEN BEGIN
                                    
                                        IF total(strsplit((*(*!dustem_plugin).(i).scope),'+',/extract) EQ 'ADD_POLSED') THEN begin
                                            ;dustem_plot_mlog,st.polsed.wav,(*(*!dustem_plugin).(i))[*,1],ppositions=position, /overplot, noerase=1, color=clrs_plgns[i], linestyle=2,xr=xr,/xlog
                                            dustem_plot_mlog,st.polsed.wav,(*(*!dustem_plugin).(i).spec)[*,2],ppositions=position,/negative_only,/overplot,noerase=1, color=clrs_plgns[i], linestyle=2 ,xr=xr,/xlog,/ylog,ytickformat='(A1)',yr=yr      
                                        ENDIF
                                    ENDIF
                                ENDFOR
                                ;PLotting of the interpolates corresponding to spectrum and filter points
                                IF ct_spec NE 0 THEN BEGIN
0068116a   Ilyes Choubani   General update + ...
2096
                                    xx=((*(*!dustem_data).used).wav)[idx_spec]
67bd858a   Ilyes Choubani   Replication of th...
2097
2098
2099
2100
2101
2102
                                    yy=dustem_interp[idx_spec]
                                    ;dustem_plot_mlog,xx,yy,ppositions=position,/overplot, noerase=1, color='red',psym=7,syms=2,xr=xr,/xlog
                                    dustem_plot_mlog,xx,yy,ppositions=position,/negative_only, /overplot, noerase=1, color='Indian Red',psym=7,syms=2,xr=xr,/xlog,/ylog,ytickformat='(A1)',yr=yr 
                                ENDIF
                                
                                IF ct_filt NE 0 THEN BEGIN
0068116a   Ilyes Choubani   General update + ...
2103
                                    xx=((*(*!dustem_data).used).wav)[idx_filt]
67bd858a   Ilyes Choubani   Replication of th...
2104
2105
2106
2107
2108
2109
2110
2111
2112
2113
2114
2115
2116
2117
2118
2119
2120
2121
2122
2123
2124
2125
                                    yy=dustem_interp[idx_filt]
                                    ;dustem_plot_mlog,xx,yy,ppositions=position, /overplot, noerase=1, color='red',psym=6,syms=2,xr=xr,/xlog
                                    dustem_plot_mlog,xx,yy,ppositions=position,/negative_only, /overplot, noerase=1, color='red',psym=6,syms=2,xr=xr,/xlog,/ylog,ytickformat='(A1)',yr=yr
                                ENDIF
                                
                                ;Plotting of the total dust emission spectrum
                                dustem_plot_mlog,st.polsed.wav,dustem_spec,ppositions=position,/negative_only,/overplot,noerase=1,xr=xr,/xlog,/ylog,ytickformat='(A1)',yr=yr                                    
                            
                            endif
                                    
                        
                        endif
                                                   
                      ;stop             
                    endif else begin ;The data points in the plot that remain unchanged.
                        ;stop
                        ;cgaxis, xaxis=1,xlog=1, xs=1,charsize=1.5,xtickformat='(A1)'
                        xyouts,pospltxt[0],pospltxt[1],textoidl('U_{\nu} (MJy/sr)'),color=0,/normal,charsize=1.3;,charthick=2.0  
                        ;if ct_hdnpts ne 0 then begin ;Hidden data points are present 
                        
                        ;Locating the hidden spectrum and filter data points     
                        ;SADLY I STILL DON'T HAVE A SOLUTION FOR THE PLOTTING OF NULL VALUES.                                   
8fbdb4c3   Ilyes Choubani   Fixed minor 0/0 e...
2126
2127
                        
                        
74103816   Ilyes Choubani   small update
2128
                        if ct_hdnpts NE 0 then begin
0068116a   Ilyes Choubani   General update + ...
2129
2130
2131
2132
                            idx_filt_hdn_pstv = where(((*(*!dustem_show).used).filt_names)(idx_rmv_sed) NE 'SPECTRUM' and ((*(*!dustem_show).used).values)(idx_rmv_sed) gt 0,ct_filt_hdn_pstv)
                            idx_spec_hdn_pstv = where(((*(*!dustem_show).used).filt_names)(idx_rmv_sed) EQ 'SPECTRUM' and ((*(*!dustem_show).used).values)(idx_rmv_sed) gt 0,ct_spec_hdn_pstv)
                            idx_filt_hdn_ngtv = where(((*(*!dustem_show).used).filt_names)(idx_rmv_sed) NE 'SPECTRUM' and ((*(*!dustem_show).used).values)(idx_rmv_sed) lt 0,ct_filt_hdn_ngtv)
                            idx_spec_hdn_ngtv = where(((*(*!dustem_show).used).filt_names)(idx_rmv_sed) EQ 'SPECTRUM' and ((*(*!dustem_show).used).values)(idx_rmv_sed) lt 0,ct_spec_hdn_ngtv)
67bd858a   Ilyes Choubani   Replication of th...
2133
2134
2135
2136
2137
2138
2139
2140
2141
2142
2143
2144
                        endif
                        ;stop
                        
                        if keyword_set(positive_only) then begin
                            ;stop
                            if testpstv ne 0 then begin
                            ;stop
                                plotsym, 0
                                
                                 
                                if ct_spec ne 0 then begin
                                
0068116a   Ilyes Choubani   General update + ...
2145
2146
2147
2148
                                    rms=3.*((*(*!dustem_data).used).sigma)(idx_spec)/2.
                                    ;dustem_plot_mlog,((*(*!dustem_data).used).wav)(idx_spec),-((*(*!dustem_data).used).values)(idx_spec),ppositions=position,charsize=1.15,color='Dodger Blue',psym=16,syms=0.8,xs=1,xr=xr,/nodata,noerase=1,/positive_only,xtickformat='(A1)',xtit='',/xlog,/ylog,yr=yr;,ytickformat='(A1)'
                                    ;if ct_spec_hdn_pstv ne 0 then dustem_plot_mlog,((*(*!dustem_data).used).wav)(idx_spec),((*(*!dustem_data).used).values)(idx_spec),ppositions=position,charsize=1.15,/overplot,color='Dodger Blue',psym=16,syms=0.8,xs=1,xr=xr,noerase=1,/positive_only,xtickformat='(A1)',xtit='',/xlog,/ylog,yr=yr else begin
                                        dustem_plot_mlog,((*(*!dustem_data).used).wav)(idx_spec),((*(*!dustem_data).used).values)(idx_spec),ppositions=position,charsize=1.15,color='Dodger Blue',psym=16,syms=0.8,xs=1,xr=xr,noerase=1,/positive_only,xtickformat='(A1)',xtit='',/xlog,/ylog,yr=yr
67bd858a   Ilyes Choubani   Replication of th...
2149
                                    ;endelse;,ytickformat='(A1)'
0068116a   Ilyes Choubani   General update + ...
2150
                                    dustem_plot_mlog,((*(*!dustem_data).used).wav)(idx_spec),((*(*!dustem_data).used).values)(idx_spec),ppositions=position,color='Dodger Blue',/positive_only,noerase=1,/overplot,rms=rms,xtit='',xtickformat='(A1)',xs=1,xr=xr,/xlog,/ylog,yr=yr,ytickformat='(A1)'  ;,charsize=1.15,psym=16,syms=0.8
67bd858a   Ilyes Choubani   Replication of th...
2151
2152
2153
2154
2155
                                 
                                endif
                                
                                if ct_filt ne 0 then begin
                                    
0068116a   Ilyes Choubani   General update + ...
2156
2157
2158
2159
2160
                                    rms=3.*((*(*!dustem_data).used).sigma)(idx_filt)/2.
                                   ; dustem_plot_mlog,((*(*!dustem_data).used).wav)(idx_filt),-1.*((*(*!dustem_data).used).values)(idx_filt),ppositions=position,charsize=1.15,color='Dodger Blue',psym=16,syms=0.8,xs=1,xr=xr,/nodata,noerase=1,/negative_only,xtickformat='(A1)',xtit='',/xlog,/ylog,yr=yr;,ytickformat='(A1)'
                                    ;if ct_filt_hdn_pstv ne 0 then dustem_plot_mlog,((*(*!dustem_data).used).wav)(idx_filt),((*(*!dustem_data).used).values)(idx_filt),/overplot,ppositions=position,charsize=1.15,color='Dodger Blue',psym=16,syms=0.8,xs=1,xr=xr,noerase=1,/positive_only,xtickformat='(A1)',xtit='',/xlog,/ylog,yr=yr else begin
                                    if ct_spec ne 0 then dustem_plot_mlog,((*(*!dustem_data).used).wav)(idx_filt),((*(*!dustem_data).used).values)(idx_filt),ppositions=position,charsize=1.15,color='Dodger Blue',psym=16,syms=0.8,xs=1,xr=xr,noerase=1,/positive_only,xtickformat='(A1)',xtit='',/xlog,/ylog,yr=yr,ytickformat='(A1)'
                                    if ct_spec eq 0 then dustem_plot_mlog,((*(*!dustem_data).used).wav)(idx_filt),((*(*!dustem_data).used).values)(idx_filt),ppositions=position,charsize=1.15,color='Dodger Blue',psym=16,syms=0.8,xs=1,xr=xr,noerase=1,/positive_only,xtickformat='(A1)',xtit='',/xlog,/ylog,yr=yr
67bd858a   Ilyes Choubani   Replication of th...
2161
                                    ;endelse;,ytickformat='(A1)'
0068116a   Ilyes Choubani   General update + ...
2162
                                    dustem_plot_mlog,((*(*!dustem_data).used).wav)(idx_filt),((*(*!dustem_data).used).values)(idx_filt),ppositions=position,color='Dodger Blue',/positive_only,noerase=1,/overplot,rms=rms,xtit='',xtickformat='(A1)',xs=1,xr=xr,/xlog,/ylog,yr=yr,ytickformat='(A1)';,charsize=1.15,psym=16,syms=0.8
67bd858a   Ilyes Choubani   Replication of th...
2163
2164
2165
                                        
                                endif
                                
74103816   Ilyes Choubani   small update
2166
                                if ct_hdnpts NE 0 then begin
67bd858a   Ilyes Choubani   Replication of th...
2167
2168
2169
                                
                                    if ct_spec_hdn_pstv ne 0 then begin
                                        ;stop
0068116a   Ilyes Choubani   General update + ...
2170
2171
2172
                                        xx = (((*(*!dustem_show).used).wav)[idx_rmv_sed])(idx_spec_hdn_pstv)
                                        yy = (((*(*!dustem_show).used).values)[idx_rmv_sed])(idx_spec_hdn_pstv)
                                        rms=3.*(((*(*!dustem_show).used).sigma)[idx_rmv_sed])(idx_spec_hdn_pstv)/2.
67bd858a   Ilyes Choubani   Replication of th...
2173
                                        
74103816   Ilyes Choubani   small update
2174
2175
                                        dustem_plot_mlog,xx,yy,ppositions=position,/positive_only,xs=1,noerase=1,charsize=1.15,xtickformat='(A1)',/overplot,xr=xr,color='Black',psym=16,syms=0.8,/xlog,/ylog,yr=yr,ytickformat='(A1)'
                                        dustem_plot_mlog,xx,yy,ppositions=position,/positive_only,noerase=1,color='Black',/overplot,rms=rms,yr=yr,xtickformat='(A1)',xr=xr,xs=1,/xlog,/ylog,ytickformat='(A1)';,psym=8,syms=0.8
67bd858a   Ilyes Choubani   Replication of th...
2176
2177
2178
2179
2180
                                    
                                    endif 
                                    
                                    if ct_filt_hdn_pstv ne 0 then begin
                                        ;stop
0068116a   Ilyes Choubani   General update + ...
2181
2182
2183
                                        xx = (((*(*!dustem_show).used).wav)[idx_rmv_sed])(idx_filt_hdn_pstv)
                                        yy = (((*(*!dustem_show).used).values)[idx_rmv_sed])(idx_filt_hdn_pstv)
                                        rms=3.*(((*(*!dustem_show).used).sigma)[idx_rmv_sed])(idx_filt_hdn_pstv)/2.
67bd858a   Ilyes Choubani   Replication of th...
2184
                                        
74103816   Ilyes Choubani   small update
2185
2186
                                        dustem_plot_mlog,xx,yy,ppositions=position,/positive_only,xs=1,noerase=1,charsize=1.15,/overplot,xtickformat='(A1)',xr=xr,color='Black',psym=16,syms=0.8,/xlog,/ylog,yr=yr,ytickformat='(A1)' 
                                        dustem_plot_mlog,xx,yy,ppositions=position,/positive_only,xs=1,noerase=1,color='Black',/overplot,rms=rms,xr=xr,yr=yr,xtickformat='(A1)',/xlog,/ylog,ytickformat='(A1)';,psym=8,syms=0.8
67bd858a   Ilyes Choubani   Replication of th...
2187
2188
2189
2190
                                    
                                    endif
                                endif   
                            endif else begin
74103816   Ilyes Choubani   small update
2191
                                
0068116a   Ilyes Choubani   General update + ...
2192
                                if ct_spec ne 0 then dustem_plot_mlog,((*(*!dustem_data).used).wav)(idx_spec),-((*(*!dustem_data).used).values)(idx_spec),ppositions=position,charsize=1.15,/nodata,color='Dodger Blue',psym=16,syms=0.8,xs=1,xr=xr,noerase=1,/positive_only,xtickformat='(A1)',xtit='',/xlog,/ylog,yr=yr;,ytickformat='(A1)'
1bc09467   Ilyes Choubani   fixed issue with ...
2193
2194
                                    
                                
0068116a   Ilyes Choubani   General update + ...
2195
                                if ct_filt ne 0 and ct_spec eq 0 then  dustem_plot_mlog,((*(*!dustem_data).used).wav)(idx_filt),-((*(*!dustem_data).used).values)(idx_filt),/nodata,ppositions=position,charsize=1.15,color='Dodger Blue',psym=16,syms=0.8,xs=1,xr=xr,noerase=1,/positive_only,xtickformat='(A1)',xtit='',/xlog,/ylog,yr=yr;,ytickformat='(A1)'
f2caf3f1   Ilyes Choubani   Debugging some er...
2196
                                
74103816   Ilyes Choubani   small update
2197
2198
2199
2200
                                if ct_hdnpts NE 0 then begin
                                
                                    if ct_spec_hdn_pstv ne 0 then begin
                                        ;stop
0068116a   Ilyes Choubani   General update + ...
2201
2202
2203
                                        xx = (((*(*!dustem_show).used).wav)[idx_rmv_sed])(idx_spec_hdn_pstv)
                                        yy = (((*(*!dustem_show).used).values)[idx_rmv_sed])(idx_spec_hdn_pstv)
                                        rms=3.*(((*(*!dustem_show).used).sigma)[idx_rmv_sed])(idx_spec_hdn_pstv)/2.
74103816   Ilyes Choubani   small update
2204
2205
2206
2207
2208
2209
2210
2211
                                        
                                        dustem_plot_mlog,xx,yy,ppositions=position,/positive_only,xs=1,noerase=1,charsize=1.15,xtickformat='(A1)',/overplot,xr=xr,color='Black',psym=16,syms=0.8,/xlog,/ylog,yr=yr,ytickformat='(A1)'
                                        dustem_plot_mlog,xx,yy,ppositions=position,/positive_only,noerase=1,color='Black',/overplot,rms=rms,yr=yr,xtickformat='(A1)',xr=xr,xs=1,/xlog,/ylog,ytickformat='(A1)';,psym=8,syms=0.8
                                    
                                    endif 
                                    
                                    if ct_filt_hdn_pstv ne 0 then begin
                                        ;stop
0068116a   Ilyes Choubani   General update + ...
2212
2213
2214
                                        xx = (((*(*!dustem_show).used).wav)[idx_rmv_sed])(idx_filt_hdn_pstv)
                                        yy = (((*(*!dustem_show).used).values)[idx_rmv_sed])(idx_filt_hdn_pstv)
                                        rms=3.*(((*(*!dustem_show).used).sigma)[idx_rmv_sed])(idx_filt_hdn_pstv)/2.
74103816   Ilyes Choubani   small update
2215
2216
2217
2218
2219
2220
                                        
                                        dustem_plot_mlog,xx,yy,ppositions=position,/positive_only,xs=1,noerase=1,charsize=1.15,/overplot,xtickformat='(A1)',xr=xr,color='Black',psym=16,syms=0.8,/xlog,/ylog,yr=yr,ytickformat='(A1)' 
                                        dustem_plot_mlog,xx,yy,ppositions=position,/positive_only,xs=1,noerase=1,color='Black',/overplot,rms=rms,xr=xr,yr=yr,xtickformat='(A1)',/xlog,/ylog,ytickformat='(A1)';,psym=8,syms=0.8
                                    
                                    endif
                                endif   
67bd858a   Ilyes Choubani   Replication of th...
2221
                            endelse                          
18e4331f   Ilyes Choubani   general update (f...
2222
                        
67bd858a   Ilyes Choubani   Replication of th...
2223
                        endif 
18e4331f   Ilyes Choubani   general update (f...
2224
                        
67bd858a   Ilyes Choubani   Replication of th...
2225
                        if keyword_set(negative_only) then begin
18e4331f   Ilyes Choubani   general update (f...
2226
                            ;stop
67bd858a   Ilyes Choubani   Replication of th...
2227
2228
2229
2230
2231
2232
2233
                            if testngtv ne 0 then begin
                                 
                                 plotsym, 0
                                 
                                 
                                 if ct_spec ne 0 then begin
                                 
0068116a   Ilyes Choubani   General update + ...
2234
2235
2236
2237
                                     rms=3.*((*(*!dustem_data).used).sigma)(idx_spec)/2.
                                     ;dustem_plot_mlog,((*(*!dustem_data).used).wav)(idx_spec),-((*(*!dustem_data).used).values)(idx_spec),ppositions=position,charsize=1.15,color='Dodger Blue',psym=16,syms=0.8,xs=1,xr=xr,/nodata,noerase=1,/negative_only,xtickformat='(A1)',xtit='',/xlog,/ylog,yr=yr;,ytickformat='(A1)'
                                     ;if ct_spec_hdn_ngtv ne 0 then dustem_plot_mlog,((*(*!dustem_data).used).wav)(idx_spec),((*(*!dustem_data).used).values)(idx_spec),ppositions=position,/overplot,charsize=1.15,color='Dodger Blue',psym=16,syms=0.8,xs=1,xr=xr,noerase=1,/negative_only,xtickformat='(A1)',xtit='',/xlog,/ylog,yr=yr else begin
                                     dustem_plot_mlog,((*(*!dustem_data).used).wav)(idx_spec),((*(*!dustem_data).used).values)(idx_spec),ppositions=position,charsize=1.15,color='Dodger Blue',psym=16,syms=0.8,xs=1,xr=xr,noerase=1,/negative_only,xtickformat='(A1)',xtit='',/xlog,/ylog,yr=yr;,ytickformat='(A1)'
67bd858a   Ilyes Choubani   Replication of th...
2238
                                     ;endelse;,ytickformat='(A1)'
0068116a   Ilyes Choubani   General update + ...
2239
                                     dustem_plot_mlog,((*(*!dustem_data).used).wav)(idx_spec),((*(*!dustem_data).used).values)(idx_spec),ppositions=position,color='Dodger Blue',/negative_only,noerase=1,/overplot,rms=rms,xtit='',charsize=1.15,xtickformat='(A1)',xs=1,psym=16,syms=0.8,xr=xr,/xlog,/ylog,yr=yr,ytickformat='(A1)'     
67bd858a   Ilyes Choubani   Replication of th...
2240
2241
2242
2243
2244
                                  
                                 endif
                                 
                                 if ct_filt ne 0 then begin
                                     
0068116a   Ilyes Choubani   General update + ...
2245
2246
2247
                                     rms=3.*((*(*!dustem_data).used).sigma)(idx_filt)/2.
                                    ; dustem_plot_mlog,((*(*!dustem_data).used).wav)(idx_filt),-1.*((*(*!dustem_data).used).values)(idx_filt),ppositions=position,charsize=1.15,color='Dodger Blue',psym=16,syms=0.8,xs=1,xr=xr,/nodata,noerase=1,/negative_only,xtickformat='(A1)',xtit='',/xlog,/ylog,yr=yr;,ytickformat='(A1)'
                                     ;if ct_filt_hdn_ngtv ne 0 then  dustem_plot_mlog,((*(*!dustem_data).used).wav)(idx_filt),((*(*!dustem_data).used).values)(idx_filt),ppositions=position,charsize=1.15,color='Dodger Blue',/overplot,psym=16,syms=0.8,xs=1,xr=xr,noerase=1,/negative_only,xtickformat='(A1)',xtit='',/xlog,/ylog,yr=yr else begin
74103816   Ilyes Choubani   small update
2248
                                     
0068116a   Ilyes Choubani   General update + ...
2249
2250
                                     if ct_spec ne 0 then dustem_plot_mlog,((*(*!dustem_data).used).wav)(idx_filt),((*(*!dustem_data).used).values)(idx_filt),ppositions=position,charsize=1.15,color='Dodger Blue',psym=16,syms=0.8,xs=1,xr=xr,noerase=1,/negative_only,xtickformat='(A1)',xtit='',/xlog,/ylog,yr=yr,ytickformat='(A1)'
                                     if ct_spec eq 0 then dustem_plot_mlog,((*(*!dustem_data).used).wav)(idx_filt),((*(*!dustem_data).used).values)(idx_filt),ppositions=position,charsize=1.15,color='Dodger Blue',psym=16,syms=0.8,xs=1,xr=xr,noerase=1,/negative_only,xtickformat='(A1)',xtit='',/xlog,/ylog,yr=yr;,ytickformat='(A1)'
67bd858a   Ilyes Choubani   Replication of th...
2251
2252
                                     ;endelse ;,ytickformat='(A1)'
                                     
0068116a   Ilyes Choubani   General update + ...
2253
                                     dustem_plot_mlog,((*(*!dustem_data).used).wav)(idx_filt),((*(*!dustem_data).used).values)(idx_filt),ppositions=position,color='Dodger Blue',/negative_only,noerase=1,/overplot,rms=rms,xtit='',charsize=1.15,xtickformat='(A1)',xs=1,psym=16,syms=0.8,xr=xr,/xlog,/ylog,yr=yr,ytickformat='(A1)'
67bd858a   Ilyes Choubani   Replication of th...
2254
2255
2256
                                         
                                 endif
                                 
74103816   Ilyes Choubani   small update
2257
                                 if ct_hdnpts NE 0 then begin
67bd858a   Ilyes Choubani   Replication of th...
2258
2259
                                 
                                     if ct_spec_hdn_ngtv ne 0 then begin
0068116a   Ilyes Choubani   General update + ...
2260
2261
2262
                                         xx = (((*(*!dustem_show).used).wav)[idx_rmv_sed])(idx_spec_hdn_ngtv)
                                         yy = (((*(*!dustem_show).used).values)[idx_rmv_sed])(idx_spec_hdn_ngtv)
                                         rms=3.*(((*(*!dustem_show).used).sigma)[idx_rmv_sed])(idx_spec_hdn_ngtv)/2.
67bd858a   Ilyes Choubani   Replication of th...
2263
                                         
74103816   Ilyes Choubani   small update
2264
2265
                                         dustem_plot_mlog,xx,yy,ppositions=position,/negative_only,xs=1,noerase=1,charsize=1.15,xtickformat='(A1)',/overplot,xr=xr,color='Black',psym=16,syms=0.8,/xlog,/ylog,yr=yr,ytickformat='(A1)'
                                         dustem_plot_mlog,xx,yy,ppositions=position,/negative_only,noerase=1,color='Black',/overplot,rms=rms,yr=yr,xtickformat='(A1)',xr=xr,xs=1,/xlog,/ylog,ytickformat='(A1)';,psym=8,syms=0.8
67bd858a   Ilyes Choubani   Replication of th...
2266
2267
2268
2269
2270
                                     
                                     endif 
                                     
                                     if ct_filt_hdn_ngtv ne 0 then begin
                                     
0068116a   Ilyes Choubani   General update + ...
2271
2272
2273
                                         xx = (((*(*!dustem_show).used).wav)[idx_rmv_sed])(idx_filt_hdn_ngtv)
                                         yy = (((*(*!dustem_show).used).values)[idx_rmv_sed])(idx_filt_hdn_ngtv)
                                         rms=3.*(((*(*!dustem_show).used).sigma)[idx_rmv_sed])(idx_filt_hdn_ngtv)/2.
67bd858a   Ilyes Choubani   Replication of th...
2274
                                         
74103816   Ilyes Choubani   small update
2275
2276
                                         dustem_plot_mlog,xx,yy,ppositions=position,/negative_only,xs=1,noerase=1,charsize=1.15,xtickformat='(A1)',/overplot,xr=xr,color='Black',psym=16,syms=0.8,/xlog,/ylog,yr=yr,ytickformat='(A1)'  
                                         dustem_plot_mlog,xx,yy,ppositions=position,/negative_only,xs=1,noerase=1,color='Black',/overplot,rms=rms,xr=xr,yr=yr,xtickformat='(A1)',/xlog,/ylog,ytickformat='(A1)';,psym=8,syms=0.8
67bd858a   Ilyes Choubani   Replication of th...
2277
2278
2279
2280
                                     
                                     endif

                                 endif 
18e4331f   Ilyes Choubani   general update (f...
2281
                            
67bd858a   Ilyes Choubani   Replication of th...
2282
                            endif else begin
1bc09467   Ilyes Choubani   fixed issue with ...
2283
                            
0068116a   Ilyes Choubani   General update + ...
2284
                                if ct_spec ne 0 then dustem_plot_mlog,((*(*!dustem_data).used).wav)(idx_spec),-((*(*!dustem_data).used).values)(idx_spec),ppositions=position,charsize=1.15,/nodata,color='Dodger Blue',psym=16,syms=0.8,xs=1,xr=xr,noerase=1,/negative_only,xtickformat='(A1)',xtit='',/xlog,/ylog,yr=yr;,ytickformat='(A1)'
1bc09467   Ilyes Choubani   fixed issue with ...
2285
2286
                                    
                                
0068116a   Ilyes Choubani   General update + ...
2287
                                if ct_filt ne 0 and ct_spec eq 0 then  dustem_plot_mlog,((*(*!dustem_data).used).wav)(idx_filt),-((*(*!dustem_data).used).values)(idx_filt),/nodata,ppositions=position,charsize=1.15,color='Dodger Blue',psym=16,syms=0.8,xs=1,xr=xr,noerase=1,/negative_only,xtickformat='(A1)',xtit='',/xlog,/ylog,yr=yr;,ytickformat='(A1)'
74103816   Ilyes Choubani   small update
2288
2289
2290
2291
2292
                                
                                
                                if ct_hdnpts NE 0 then begin
                                
                                    if ct_spec_hdn_ngtv ne 0 then begin
0068116a   Ilyes Choubani   General update + ...
2293
2294
2295
                                        xx = (((*(*!dustem_show).used).wav)[idx_rmv_sed])(idx_spec_hdn_ngtv)
                                        yy = (((*(*!dustem_show).used).values)[idx_rmv_sed])(idx_spec_hdn_ngtv)
                                        rms=3.*(((*(*!dustem_show).used).sigma)[idx_rmv_sed])(idx_spec_hdn_ngtv)/2.
74103816   Ilyes Choubani   small update
2296
2297
2298
2299
2300
2301
2302
2303
                                        
                                        dustem_plot_mlog,xx,yy,ppositions=position,/negative_only,xs=1,noerase=1,charsize=1.15,xtickformat='(A1)',/overplot,xr=xr,color='Black',psym=16,syms=0.8,/xlog,/ylog,yr=yr,ytickformat='(A1)'
                                        dustem_plot_mlog,xx,yy,ppositions=position,/negative_only,noerase=1,color='Black',/overplot,rms=rms,yr=yr,xtickformat='(A1)',xr=xr,xs=1,/xlog,/ylog,ytickformat='(A1)';,psym=8,syms=0.8
                                    
                                    endif 
                                    
                                    if ct_filt_hdn_ngtv ne 0 then begin
                                    
0068116a   Ilyes Choubani   General update + ...
2304
2305
2306
                                        xx = (((*(*!dustem_show).used).wav)[idx_rmv_sed])(idx_filt_hdn_ngtv)
                                        yy = (((*(*!dustem_show).used).values)[idx_rmv_sed])(idx_filt_hdn_ngtv)
                                        rms=3.*(((*(*!dustem_show).used).sigma)[idx_rmv_sed])(idx_filt_hdn_ngtv)/2.
74103816   Ilyes Choubani   small update
2307
2308
2309
2310
2311
2312
2313
2314
2315
2316
2317
2318
                                        
                                        dustem_plot_mlog,xx,yy,ppositions=position,/negative_only,xs=1,noerase=1,charsize=1.15,xtickformat='(A1)',/overplot,xr=xr,color='Black',psym=16,syms=0.8,/xlog,/ylog,yr=yr,ytickformat='(A1)'  
                                        dustem_plot_mlog,xx,yy,ppositions=position,/negative_only,xs=1,noerase=1,color='Black',/overplot,rms=rms,xr=xr,yr=yr,xtickformat='(A1)',/xlog,/ylog,ytickformat='(A1)';,psym=8,syms=0.8
                                    
                                    endif

                                endif     
                                 
                                 
                                 
                                 
                                 
67bd858a   Ilyes Choubani   Replication of th...
2319
2320
2321
                            endelse
                            ;stop
                        endif
18e4331f   Ilyes Choubani   general update (f...
2322
2323
2324
2325
2326
2327
                        
                    
                    endelse 
                
                
                
67bd858a   Ilyes Choubani   Replication of th...
2328
                endelse 
18e4331f   Ilyes Choubani   general update (f...
2329
            
67bd858a   Ilyes Choubani   Replication of th...
2330
2331
            endelse ;

b5314324   Ilyes Choubani   updating the plot...
2332
2333
2334
        
        end
        
afde94a3   Ilyes Choubani   general update
2335
        'QEXT': begin   ;Correct this like you corrected extinction...
1bc09467   Ilyes Choubani   fixed issue with ...
2336
            
4b745987   Ilyes Choubani   minor update
2337
2338
2339
2340
2341
2342
2343
            IF ct_x NE 0 then begin
            
                xr=xr_x 
                yr=yr_x
                
            ENDIF
            
1bc09467   Ilyes Choubani   fixed issue with ...
2344
2345
2346
2347
2348
2349
            vectw=DINDGEN(1001)*(alog10(1E7) - alog10(1E5))/(1000 - 1L) + alog10(1E5)
            vectw=10^vectw[1:*]
            vectw=[wavs,vectw]
            vectx=vectw*0+1
            
            
0068116a   Ilyes Choubani   General update + ...
2350
2351
            varvar=where((*(*!dustem_data).qext).values GT 0, testpstv)
            varvar=where((*(*!dustem_data).qext).values LT 0, testngtv)
2df3360b   Ilyes Choubani   Correcting error:...
2352
            
18e4331f   Ilyes Choubani   general update (f...
2353
            ;stop
0068116a   Ilyes Choubani   General update + ...
2354
2355
            idx_filt=where((*(*!dustem_data).qext).filt_names NE 'SPECTRUM', ct_filt)
            idx_spec=where((*(*!dustem_data).qext).filt_names EQ 'SPECTRUM' , ct_spec)
18e4331f   Ilyes Choubani   general update (f...
2356
            
8fbdb4c3   Ilyes Choubani   Fixed minor 0/0 e...
2357
            
18e4331f   Ilyes Choubani   general update (f...
2358
            ;Locating all the hidden data points (spectrum+filter)
0068116a   Ilyes Choubani   General update + ...
2359
            match2,((*(*!dustem_data).qext).wav),((*(*!dustem_show).qext).wav),show_sedpts,fit_sedpts ;only show_sedpts is needed
74103816   Ilyes Choubani   small update
2360
            idx_rmv_sed=where(fit_sedpts eq -1, ct_hdnpts) ; indices of the points to hide
c8368c6e   Ilyes Choubani   updating plotting...
2361
            
5f04fa07   Ilyes Choubani   general update
2362
            ;stop
bc224f3e   Ilyes Choubani   Update of plottin...
2363
2364
2365
2366
2367
2368
2369
            
            ;#1) get the plotting keywords (pertaining to each data set) @here when the _extra structure is ready
            
            if keyword_set(nodata) then begin ;when the data is not present
            
                if keyword_set(norm) then begin ;normalized plot
                    
f2caf3f1   Ilyes Choubani   Debugging some er...
2370
                    xtit=textoidl('1/\lambda (\mum^{-1})')
bc224f3e   Ilyes Choubani   Update of plottin...
2371
                    if !run_pol then xtit = ''
1bc09467   Ilyes Choubani   fixed issue with ...
2372
                    cgplot,1/vectw,vectx,/xlog,/ys,xs=1,pos=position,noerase=1,xtickformat='(A1)',color='Black',xr=xr,xtit=xtit,yr=[0.0,2.0],yticks=2,ymino=2,xticklen=0.1,ytickformat='(F6.2)',charsize=1.0
bc224f3e   Ilyes Choubani   Update of plottin...
2373
2374
2375
2376
                    xyouts,pospltxt[0],pospltxt[1],textoidl('norm'),color=0,/normal,charsize=1.1                        
                
                endif else begin ;normal plot
                    
18e4331f   Ilyes Choubani   general update (f...
2377
2378
                    cgplot,wavs,wavs,/nodata,/ylog,/xlog,/ys,xs=1,pos=position,noerase=1,charsize=1.15,xtickformat='(A1)',color='Powder Blue',xr=xr,xtit='',yr=yr,psym=8,syms=0.8  
                    ;cgaxis, xaxis=1 ,xlog=1 ,xrange=((!const.c*1E6/xr)*1E-9),charsize=1.15,title=textoidl('\nu (GHz)'),xticklen=0.05,xminor=10
94c4dffa   Ilyes Choubani   update + fixes fo...
2379
                    xyouts,pospltxt[0],pospltxt[1],textoidl('\tau_{QEXT}'),color=0,/normal,charsize=1.3;,charthick=2.0
bc224f3e   Ilyes Choubani   Update of plottin...
2380
2381
2382
2383
2384
                  
                endelse  
                
            
            endif else begin ;when the data is present 
18e4331f   Ilyes Choubani   general update (f...
2385
                
bc224f3e   Ilyes Choubani   Update of plottin...
2386
                if keyword_set(norm) then begin 
c8368c6e   Ilyes Choubani   updating plotting...
2387
                    
bc224f3e   Ilyes Choubani   Update of plottin...
2388
2389
                    if keyword_set(refresh) then begin ;The data points in the plot that are being refreshed 
                        
07372e26   Ilyes Choubani   Corrected huge pl...
2390
                        ;MAJOR LOOP OVER THE SIGN??? - YES BECAUSE YOU NEED TO KNOW WHICH ONE IS THE 
c8368c6e   Ilyes Choubani   updating plotting...
2391
                
18e4331f   Ilyes Choubani   general update (f...
2392
                        IF ct_spec NE 0 THEN BEGIN
f2caf3f1   Ilyes Choubani   Debugging some er...
2393
                            
0068116a   Ilyes Choubani   General update + ...
2394
                            xx=((*(*!dustem_data).qext).wav)[idx_spec]
5f04fa07   Ilyes Choubani   general update
2395
                            yy=dustem_interp[idx_spec]
0068116a   Ilyes Choubani   General update + ...
2396
                            rms=3.*((*(*!dustem_data).qext).sigma)(idx_spec)/2.
f2caf3f1   Ilyes Choubani   Debugging some er...
2397
2398
2399
2400
2401
2402
2403
2404
                            
                            ;testing so that data/yy is finite: 
                            ;avoiding zero points in yy since we divide by it
                            ;testing also if the data is full of zeros (ie: PSI=0 for U and PSI=90 for Q)
                            
                            indzero = where(yy NE 0, ct_zero)
                            if ct_zero ne 0 then begin  

0068116a   Ilyes Choubani   General update + ...
2405
2406
                                cgoplot,(1/xx)[indzero],(((*(*!dustem_data).qext).values)(idx_spec))[indzero]/yy[indzero],pos=position,psym=16,color='Powder Blue',syms=0.8,noerase=1 
                                cgerrplot,(1/((*(*!dustem_data).qext).wav)(idx_spec))[indzero],((((*(*!dustem_data).qext).values)[idx_spec])[indzero]-rms[indzero])/yy[indzero],((((*(*!dustem_data).qext).values)[idx_spec])[indzero]+rms[indzero])/yy[indzero],color='Powder Blue'
f2caf3f1   Ilyes Choubani   Debugging some er...
2407
                            endif
18e4331f   Ilyes Choubani   general update (f...
2408
2409
                        ENDIF
                        
bc224f3e   Ilyes Choubani   Update of plottin...
2410
                        IF ct_filt NE 0 THEN BEGIN
18e4331f   Ilyes Choubani   general update (f...
2411
                            ;stop
0068116a   Ilyes Choubani   General update + ...
2412
                            xx=((*(*!dustem_data).qext).wav)[idx_filt]
5f04fa07   Ilyes Choubani   general update
2413
                            yy=dustem_interp[idx_filt]
0068116a   Ilyes Choubani   General update + ...
2414
                            rms=3.*((*(*!dustem_data).qext).sigma)(idx_filt)/2. 
f2caf3f1   Ilyes Choubani   Debugging some er...
2415
2416
                            indzero = where(yy NE 0, ct_zero)
                            IF ct_zero NE 0 THEN BEGIN
0068116a   Ilyes Choubani   General update + ...
2417
2418
                                cgoplot,(1/xx)[indzero],(((*(*!dustem_data).qext).values)(idx_filt))[indzero]/yy[indzero],pos=position,psym=16,color='Dodger Blue',syms=0.8,noerase=1 
                                cgerrplot,(1/((*(*!dustem_data).qext).wav)(idx_filt))[indzero],((((*(*!dustem_data).qext).values)[idx_filt])[indzero]-rms[indzero])/yy[indzero],((((*(*!dustem_data).qext).values)[idx_filt])[indzero]+rms[indzero])/yy[indzero],color='Dodger Blue' 
f2caf3f1   Ilyes Choubani   Debugging some er...
2419
                            ENDIF
bc224f3e   Ilyes Choubani   Update of plottin...
2420
                        ENDIF
c8368c6e   Ilyes Choubani   updating plotting...
2421
      
bc224f3e   Ilyes Choubani   Update of plottin...
2422
                        
bc224f3e   Ilyes Choubani   Update of plottin...
2423
                    endif else begin ;The data points in the plot that remain unchanged
18e4331f   Ilyes Choubani   general update (f...
2424
                        ;stop
1bc09467   Ilyes Choubani   fixed issue with ...
2425
                        
f2caf3f1   Ilyes Choubani   Debugging some er...
2426
                        xtit=textoidl('1/\lambda (\mum^{-1})')
1355825c   Ilyes Choubani   General update
2427
                        ;if !run_pol then xtit = ''
afde94a3   Ilyes Choubani   general update
2428
                        cgplot,1/vectw,vectx,/xlog,/ys,xs=1,pos=position,noerase=1,color='Black',xr=xr,xtit=xtit,yr=[0.0,2.0],yticks=2,ymino=2,xticklen=0.1,ytickformat='(F6.2)',charsize=1.0
bc224f3e   Ilyes Choubani   Update of plottin...
2429
2430
2431
2432
2433
                        xyouts,pospltxt[0],pospltxt[1],textoidl('norm'),color=0,/normal,charsize=1.1
                    
                    endelse
                    
                
07372e26   Ilyes Choubani   Corrected huge pl...
2434
                endif else begin ; normal plot 
c8368c6e   Ilyes Choubani   updating plotting...
2435
                              
bc224f3e   Ilyes Choubani   Update of plottin...
2436
                    if keyword_set(refresh) then begin ;The data points in the plot are being refreshed
4b745987   Ilyes Choubani   minor update
2437
                        
18e4331f   Ilyes Choubani   general update (f...
2438
2439
                        if keyword_set(positive_only) then begin
     
2df3360b   Ilyes Choubani   Correcting error:...
2440
                            if testpstv ne 0 then begin
4b745987   Ilyes Choubani   minor update
2441
                                
18e4331f   Ilyes Choubani   general update (f...
2442
                                FOR i=0L,Ngrains-1 DO BEGIN
5f04fa07   Ilyes Choubani   general update
2443
                                    
07372e26   Ilyes Choubani   Corrected huge pl...
2444
2445
2446
                                    vecto = transpose((st.polext.(1))[i,*]+(st.polext.(2))[i,*])
                                    vecte = transpose((st.ext.(1))[i,*]+(st.ext.(2))[i,*])
                                    testneq = where( vecto ne 0,countneq)
07372e26   Ilyes Choubani   Corrected huge pl...
2447
                                    
4b745987   Ilyes Choubani   minor update
2448

5f04fa07   Ilyes Choubani   general update
2449
                                    if countneq ne 0 then begin 
07372e26   Ilyes Choubani   Corrected huge pl...
2450
                                        vecfin = vecto*0.0 ;em_tot can be used here right? 
5f04fa07   Ilyes Choubani   general update
2451
                                        ;stop
07372e26   Ilyes Choubani   Corrected huge pl...
2452
                                        vecfin[testneq] = (vecto[testneq])/vecte[testneq];extra_spec[testneq];(st.sed.em_tot)[testneq];(st.sed.(i+1))[testneq];*fact;(st.sed.(i+1))[testneq]
5f04fa07   Ilyes Choubani   general update
2453
2454
                                        ;stop
                                        ;polar_ippsi2iqu,st.sed.(i+1)*fact,specqgrain,specugrain,st.polsed.(i+1)*fact/spec,replicate(!dustem_psi,n_elements(spec)) ;temporary solution
07372e26   Ilyes Choubani   Corrected huge pl...
2455
2456
2457
                                        polar_ippsi2iqu,vecte*(*!dustem_HCD)/1.0e21,specqgrain,specugrain,vecfin,replicate(!dustem_psi_ext,n_elements(vecfin)) ;temporary solution
                                        
                                        ;if countneg ne 0 and cos(!dustem_psi_ext) gt 0 then specqgrain[testneg] = 0
5f04fa07   Ilyes Choubani   general update
2458
                                        
5f04fa07   Ilyes Choubani   general update
2459
                                        ;dustem_plot_mlog,st.polsed.wav,specqgrain,ppositions=position,/overplot,noerase=1,color=use_cols[i],xr=xr,/xlog 
1bc09467   Ilyes Choubani   fixed issue with ...
2460
                                        dustem_plot_mlog,1/st.polext.wav,specqgrain,ppositions=position,/positive_only,/overplot,noerase=1,color=use_cols[i],xr=xr,/xlog,/ylog,ytickformat='(A1)',yr=yr
07372e26   Ilyes Choubani   Corrected huge pl...
2461
                                        
5f04fa07   Ilyes Choubani   general update
2462
                                    endif
4b745987   Ilyes Choubani   minor update
2463
2464
                                    
                                    
18e4331f   Ilyes Choubani   general update (f...
2465
2466
2467
                                ENDFOR
                                
                                for i=0L,n_plgns-1 do begin
3c479f24   Ilyes Choubani   Allowing to fix p...
2468
2469
                                    
                                    IF isa((*!dustem_plugin).(0).spec) THEN BEGIN
67bd858a   Ilyes Choubani   Replication of th...
2470
                                        IF total(strsplit((*(*!dustem_plugin).(i).scope),'+',/extract) EQ 'ADD_POLEXT') THEN begin
3c479f24   Ilyes Choubani   Allowing to fix p...
2471
2472
                                         
                                            ;dustem_plot_mlog,st.polsed.wav,(*(*!dustem_plugin).(i))[*,1],ppositions=position, /overplot, noerase=1, color=clrs_plgns[i], linestyle=2,xr=xr,/xlog
1bc09467   Ilyes Choubani   fixed issue with ...
2473
                                            dustem_plot_mlog,1/st.polext.wav,(*(*!dustem_plugin).(i).spec)[*,1],ppositions=position,/positive_only,/overplot,noerase=1, color=clrs_plgns[i], linestyle=2 ,xr=xr,/xlog,/ylog,ytickformat='(A1)',yr=yr      
3c479f24   Ilyes Choubani   Allowing to fix p...
2474
                                        ENDIF
18e4331f   Ilyes Choubani   general update (f...
2475
2476
2477
2478
                                    ENDIF
                                endfor
                                
                                IF ct_spec NE 0 THEN BEGIN
0068116a   Ilyes Choubani   General update + ...
2479
                                    xx=((*(*!dustem_data).qext).wav)[idx_spec]
5f04fa07   Ilyes Choubani   general update
2480
                                    yy=dustem_interp[idx_spec]
18e4331f   Ilyes Choubani   general update (f...
2481
                                    ;dustem_plot_mlog,xx,yy,ppositions=position,/overplot, noerase=1, color='red',psym=7,syms=2,xr=xr,/xlog
1bc09467   Ilyes Choubani   fixed issue with ...
2482
                                    dustem_plot_mlog,1/xx,yy,ppositions=position,/positive_only, /overplot, noerase=1, color='Indian Red',psym=7,syms=2,xr=xr,/xlog,/ylog,ytickformat='(A1)',yr=yr 
18e4331f   Ilyes Choubani   general update (f...
2483
2484
2485
                                ENDIF
                                
                                IF ct_filt NE 0 THEN BEGIN
0068116a   Ilyes Choubani   General update + ...
2486
                                    xx=((*(*!dustem_data).qext).wav)[idx_filt]
5f04fa07   Ilyes Choubani   general update
2487
                                    yy=dustem_interp[idx_filt]
18e4331f   Ilyes Choubani   general update (f...
2488
                                    ;dustem_plot_mlog,xx,yy,ppositions=position, /overplot, noerase=1, color='red',psym=6,syms=2,xr=xr,/xlog
1bc09467   Ilyes Choubani   fixed issue with ...
2489
                                    dustem_plot_mlog,1/xx,yy,ppositions=position,/positive_only, /overplot, noerase=1, color='red',psym=6,syms=2,xr=xr,/xlog,/ylog,ytickformat='(A1)',yr=yr
18e4331f   Ilyes Choubani   general update (f...
2490
2491
                                ENDIF
                                
1bc09467   Ilyes Choubani   fixed issue with ...
2492
                                dustem_plot_mlog,1/st.polext.wav,dustem_spec,ppositions=position,/positive_only,/overplot,noerase=1,xr=xr,/xlog,/ylog,ytickformat='(A1)',yr=yr                                    
07372e26   Ilyes Choubani   Corrected huge pl...
2493
                                
18e4331f   Ilyes Choubani   general update (f...
2494
2495
                            endif
                                    
bc224f3e   Ilyes Choubani   Update of plottin...
2496
                        
18e4331f   Ilyes Choubani   general update (f...
2497
                        endif
bc224f3e   Ilyes Choubani   Update of plottin...
2498
                        
5f04fa07   Ilyes Choubani   general update
2499
                        ;stop
18e4331f   Ilyes Choubani   general update (f...
2500
                        if keyword_set(negative_only) then begin
5f04fa07   Ilyes Choubani   general update
2501
                            ;stop     
2df3360b   Ilyes Choubani   Correcting error:...
2502
                            if testngtv ne 0 then begin
c8368c6e   Ilyes Choubani   updating plotting...
2503
                            
5f04fa07   Ilyes Choubani   general update
2504
                                ;stop    
18e4331f   Ilyes Choubani   general update (f...
2505
2506
                                ;Plotting of the spectra of the dust species
                                FOR i=0L,Ngrains-1 DO BEGIN
07372e26   Ilyes Choubani   Corrected huge pl...
2507
2508
2509
                                    vecto = transpose(((st.polext.(1))[i,*]+(st.polext.(2))[i,*]))
                                    vecte = transpose(((st.ext.(1))[i,*]+(st.ext.(2))[i,*]))
                                    testneq = where(vecto ne 0,countneq)
5f04fa07   Ilyes Choubani   general update
2510
2511
                                    ;stop
                                    if countneq ne 0 then begin 
07372e26   Ilyes Choubani   Corrected huge pl...
2512
                                        vecfin = vecto*0.0 ;em_tot can be used here right? 
5f04fa07   Ilyes Choubani   general update
2513
                                        ;stop
07372e26   Ilyes Choubani   Corrected huge pl...
2514
                                        vecfin[testneq] = (vecto[testneq])/vecte[testneq];extra_spec[testneq];(st.sed.em_tot)[testneq];(st.sed.(i+1))[testneq];*fact;(st.sed.(i+1))[testneq] 
5f04fa07   Ilyes Choubani   general update
2515
                                        ;stop    
07372e26   Ilyes Choubani   Corrected huge pl...
2516
                                        polar_ippsi2iqu,vecte*(*!dustem_HCD)/1.0e21,specqgrain,specugrain,vecfin,replicate(!dustem_psi_ext,n_elements(vecfin)) ;temporary solution
74103816   Ilyes Choubani   small update
2517
                                        
5f04fa07   Ilyes Choubani   general update
2518
                                        ;dustem_plot_mlog,st.polsed.wav,specqgrain,ppositions=position,/overplot,noerase=1,color=use_cols[i],xr=xr,/xlog 
1bc09467   Ilyes Choubani   fixed issue with ...
2519
                                        dustem_plot_mlog,1/st.polext.wav,specqgrain,ppositions=position,/negative_only,/overplot,noerase=1,color=use_cols[i],xr=xr,/xlog,/ylog,ytickformat='(A1)',yr=yr
5f04fa07   Ilyes Choubani   general update
2520
                                    endif 
18e4331f   Ilyes Choubani   general update (f...
2521
2522
2523
                                ENDFOR
                                ;Plotting of the plugins
                                for i=0L,n_plgns-1 do begin
3c479f24   Ilyes Choubani   Allowing to fix p...
2524
2525
                                    IF isa((*!dustem_plugin).(0).spec) THEN BEGIN
                                    
67bd858a   Ilyes Choubani   Replication of th...
2526
                                        IF total(strsplit((*(*!dustem_plugin).(i).scope),'+',/extract) EQ 'ADD_POLEXT') THEN begin
3c479f24   Ilyes Choubani   Allowing to fix p...
2527
2528
     
                                            ;dustem_plot_mlog,st.polsed.wav,(*(*!dustem_plugin).(i))[*,1],ppositions=position, /overplot, noerase=1, color=clrs_plgns[i], linestyle=2,xr=xr,/xlog
1bc09467   Ilyes Choubani   fixed issue with ...
2529
                                            dustem_plot_mlog,1/st.polext.wav,(*(*!dustem_plugin).(i).spec)[*,1],ppositions=position,/negative_only,/overplot,noerase=1, color=clrs_plgns[i], linestyle=2 ,xr=xr,/xlog,/ylog,ytickformat='(A1)',yr=yr      
3c479f24   Ilyes Choubani   Allowing to fix p...
2530
2531
                                        ENDIF
                                        
18e4331f   Ilyes Choubani   general update (f...
2532
2533
2534
2535
                                    ENDIF
                                endfor
                                ;PLotting of the interpolates corresponding to spectrum and filter points
                                IF ct_spec NE 0 THEN BEGIN
0068116a   Ilyes Choubani   General update + ...
2536
                                    xx=((*(*!dustem_data).qext).wav)[idx_spec]
5f04fa07   Ilyes Choubani   general update
2537
                                    yy=dustem_interp[idx_spec]
18e4331f   Ilyes Choubani   general update (f...
2538
                                    ;dustem_plot_mlog,xx,yy,ppositions=position,/overplot, noerase=1, color='red',psym=7,syms=2,xr=xr,/xlog
1bc09467   Ilyes Choubani   fixed issue with ...
2539
                                    dustem_plot_mlog,1/xx,yy,ppositions=position,/negative_only, /overplot, noerase=1, color='Indian Red',psym=7,syms=2,xr=xr,/xlog,/ylog,ytickformat='(A1)',yr=yr 
18e4331f   Ilyes Choubani   general update (f...
2540
2541
2542
                                ENDIF
                                
                                IF ct_filt NE 0 THEN BEGIN
0068116a   Ilyes Choubani   General update + ...
2543
                                    xx=((*(*!dustem_data).qext).wav)[idx_filt]
5f04fa07   Ilyes Choubani   general update
2544
                                    yy=dustem_interp[idx_filt]
18e4331f   Ilyes Choubani   general update (f...
2545
                                    ;dustem_plot_mlog,xx,yy,ppositions=position, /overplot, noerase=1, color='red',psym=6,syms=2,xr=xr,/xlog
1bc09467   Ilyes Choubani   fixed issue with ...
2546
                                    dustem_plot_mlog,1/xx,yy,ppositions=position,/negative_only, /overplot, noerase=1, color='red',psym=6,syms=2,xr=xr,/xlog,/ylog,ytickformat='(A1)',yr=yr
18e4331f   Ilyes Choubani   general update (f...
2547
2548
                                ENDIF
                                ;Plotting of the total dust emission spectrum
1bc09467   Ilyes Choubani   fixed issue with ...
2549
                                dustem_plot_mlog,1/st.polext.wav,dustem_spec,ppositions=position,/negative_only,/overplot,noerase=1,xr=xr,/xlog,/ylog,ytickformat='(A1)',yr=yr                                    
18e4331f   Ilyes Choubani   general update (f...
2550
2551
2552
                            
                            endif
                                    
bc224f3e   Ilyes Choubani   Update of plottin...
2553
                        
18e4331f   Ilyes Choubani   general update (f...
2554
2555
2556
2557
2558
2559
                        endif
                                                   
                      ;stop             
                    endif else begin ;The data points in the plot that remain unchanged.; DO NOT USE AN ELSE HERE. 
                        ;stop
                        ;cgaxis, xaxis=1,xlog=1, xs=1,charsize=1.5,xtickformat='(A1)'
94c4dffa   Ilyes Choubani   update + fixes fo...
2560
                        xyouts,pospltxt[0],pospltxt[1],textoidl('\tau_{QEXT}'),color=0,/normal,charsize=1.3;,charthick=2.0  
2df3360b   Ilyes Choubani   Correcting error:...
2561
                        ;if ct_hdnpts ne 0 then begin ;Hidden data points are present 
18e4331f   Ilyes Choubani   general update (f...
2562
                            
2df3360b   Ilyes Choubani   Correcting error:...
2563
2564
                        ;Locating the hidden spectrum and filter data points     
                        ;SADLY I STILL DON'T HAVE A SOLUTION FOR THE PLOTTING OF NULL VALUES.                                   
0068116a   Ilyes Choubani   General update + ...
2565
2566
                        ;idx_filt_hdn = where(((*(*!dustem_show).qsed).filt_names)(idx_rmv_sed) NE 'SPECTRUM',ct_filt_hdn)
                        ;idx_spec_hdn = where(((*(*!dustem_show).qsed).filt_names)(idx_rmv_sed) EQ 'SPECTRUM',ct_spec_hdn)
9cb38725   Ilyes Choubani   Fixed tests relat...
2567
                        if ct_hdnpts then begin
0068116a   Ilyes Choubani   General update + ...
2568
2569
2570
2571
                            idx_filt_hdn_pstv = where(((*(*!dustem_show).qext).filt_names)(idx_rmv_sed) NE 'SPECTRUM' and ((*(*!dustem_show).qext).values)(idx_rmv_sed) gt 0,ct_filt_hdn_pstv)
                            idx_spec_hdn_pstv = where(((*(*!dustem_show).qext).filt_names)(idx_rmv_sed) EQ 'SPECTRUM' and ((*(*!dustem_show).qext).values)(idx_rmv_sed) gt 0,ct_spec_hdn_pstv)
                            idx_filt_hdn_ngtv = where(((*(*!dustem_show).qext).filt_names)(idx_rmv_sed) NE 'SPECTRUM' and ((*(*!dustem_show).qext).values)(idx_rmv_sed) lt 0,ct_filt_hdn_ngtv)
                            idx_spec_hdn_ngtv = where(((*(*!dustem_show).qext).filt_names)(idx_rmv_sed) EQ 'SPECTRUM' and ((*(*!dustem_show).qext).values)(idx_rmv_sed) lt 0,ct_spec_hdn_ngtv)
9cb38725   Ilyes Choubani   Fixed tests relat...
2572
                        endif
bc224f3e   Ilyes Choubani   Update of plottin...
2573
                        
c8368c6e   Ilyes Choubani   updating plotting...
2574
                        
18e4331f   Ilyes Choubani   general update (f...
2575
                        if keyword_set(positive_only) then begin
afde94a3   Ilyes Choubani   general update
2576
                            
2df3360b   Ilyes Choubani   Correcting error:...
2577
                            if testpstv ne 0 then begin
07372e26   Ilyes Choubani   Corrected huge pl...
2578
                        
74103816   Ilyes Choubani   small update
2579
2580
2581
2582
2583
                                plotsym, 0
                                
                                
                                if ct_spec ne 0 then begin
                                
0068116a   Ilyes Choubani   General update + ...
2584
2585
                                    rms=3.*((*(*!dustem_data).qext).sigma)(idx_spec)/2.
                                    ;dustem_plot_mlog,((*(*!dustem_data).qsed).wav)(idx_spec),-((*(*!dustem_data).qsed).values)(idx_spec),ppositions=position,charsize=1.15,color='Dodger Blue',psym=16,syms=0.8,xs=1,xr=xr,/nodata,noerase=1,/positive_only,xtickformat='(A1)',xtit='',/xlog,/ylog,yr=yr;,ytickformat='(A1)'
74103816   Ilyes Choubani   small update
2586
                                
0068116a   Ilyes Choubani   General update + ...
2587
                                    dustem_plot_mlog,1/((*(*!dustem_data).qext).wav)(idx_spec),((*(*!dustem_data).qext).values)(idx_spec),ppositions=position,charsize=1.15,color='Powder Blue',psym=16,syms=0.8,xs=1,xr=xr,noerase=1,/positive_only,xtickformat='(A1)',xtit='',/xlog,/ylog,yr=yr;,ytickformat='(A1)'
74103816   Ilyes Choubani   small update
2588
                                    
0068116a   Ilyes Choubani   General update + ...
2589
                                    dustem_plot_mlog,1/((*(*!dustem_data).qext).wav)(idx_spec),((*(*!dustem_data).qext).values)(idx_spec),ppositions=position,color='Powder Blue',/positive_only,noerase=1,/overplot,rms=rms,xtit='',charsize=1.15,xtickformat='(A1)',xs=1,psym=16,syms=0.8,xr=xr,/xlog,/ylog,yr=yr,ytickformat='(A1)'     
74103816   Ilyes Choubani   small update
2590
2591
2592
2593
2594
                                     
                                endif
                                
                                if ct_filt ne 0 then begin
                                    
0068116a   Ilyes Choubani   General update + ...
2595
2596
2597
2598
2599
                                    rms=3.*((*(*!dustem_data).qext).sigma)(idx_filt)/2.
                                   ; dustem_plot_mlog,((*(*!dustem_data).qsed).wav)(idx_filt),-1.*((*(*!dustem_data).qsed).values)(idx_filt),ppositions=position,charsize=1.15,color='Dodger Blue',psym=16,syms=0.8,xs=1,xr=xr,/nodata,noerase=1,/negative_only,xtickformat='(A1)',xtit='',/xlog,/ylog,yr=yr;,ytickformat='(A1)'
                                    if ct_spec ne 0 then dustem_plot_mlog,1/((*(*!dustem_data).qext).wav)(idx_filt),((*(*!dustem_data).qext).values)(idx_filt),ppositions=position,charsize=1.15,color='Dodger Blue',psym=16,syms=0.8,xs=1,xr=xr,noerase=1,/positive_only,xtickformat='(A1)',xtit='',/xlog,/ylog,yr=yr,ytickformat='(A1)'
                                    if ct_spec eq 0 then dustem_plot_mlog,1/((*(*!dustem_data).qext).wav)(idx_filt),((*(*!dustem_data).qext).values)(idx_filt),ppositions=position,charsize=1.15,color='Dodger Blue',psym=16,syms=0.8,xs=1,xr=xr,noerase=1,/positive_only,xtickformat='(A1)',xtit='',/xlog,/ylog,yr=yr;,ytickformat='(A1)'
                                    dustem_plot_mlog,1/((*(*!dustem_data).qext).wav)(idx_filt),((*(*!dustem_data).qext).values)(idx_filt),ppositions=position,color='Dodger Blue',/positive_only,noerase=1,/overplot,rms=rms,xtit='',charsize=1.15,xtickformat='(A1)',xs=1,psym=16,syms=0.8,xr=xr,/xlog,/ylog,yr=yr,ytickformat='(A1)'
74103816   Ilyes Choubani   small update
2600
2601
2602
                                        
                                endif
                                
18e4331f   Ilyes Choubani   general update (f...
2603
                                
74103816   Ilyes Choubani   small update
2604
                                if ct_hdnpts NE 0 then begin
18e4331f   Ilyes Choubani   general update (f...
2605
                                
9cb38725   Ilyes Choubani   Fixed tests relat...
2606
                                    if ct_spec_hdn_pstv ne 0 then begin
0068116a   Ilyes Choubani   General update + ...
2607
2608
2609
                                        xx = (((*(*!dustem_show).qext).wav)[idx_rmv_sed])(idx_spec_hdn_pstv)
                                        yy = (((*(*!dustem_show).qext).values)[idx_rmv_sed])(idx_spec_hdn_pstv)
                                        rms=3.*(((*(*!dustem_show).qext).sigma)[idx_rmv_sed])(idx_spec_hdn_pstv)/2.
9cb38725   Ilyes Choubani   Fixed tests relat...
2610
                                        
74103816   Ilyes Choubani   small update
2611
                                        dustem_plot_mlog,1/xx,yy,ppositions=position,/positive_only,xs=1,noerase=1,/overplot,charsize=1.15,xtickformat='(A1)',xr=xr,color='Black',psym=16,syms=0.8,/xlog,/ylog,yr=yr
1bc09467   Ilyes Choubani   fixed issue with ...
2612
                                        dustem_plot_mlog,1/xx,yy,ppositions=position,/positive_only,noerase=1,color='Black',/overplot,rms=rms,yr=yr,xtickformat='(A1)',xr=xr,xs=1,/xlog,/ylog;,psym=8,syms=0.8
9cb38725   Ilyes Choubani   Fixed tests relat...
2613
2614
2615
2616
2617
                                    
                                    endif 
                                    
                                    if ct_filt_hdn_pstv ne 0 then begin
                                    
0068116a   Ilyes Choubani   General update + ...
2618
2619
2620
                                        xx = (((*(*!dustem_show).qext).wav)[idx_rmv_sed])(idx_filt_hdn_pstv)
                                        yy = (((*(*!dustem_show).qext).values)[idx_rmv_sed])(idx_filt_hdn_pstv)
                                        rms=3.*(((*(*!dustem_show).qext).sigma)[idx_rmv_sed])(idx_filt_hdn_pstv)/2.
9cb38725   Ilyes Choubani   Fixed tests relat...
2621
                                        
74103816   Ilyes Choubani   small update
2622
                                        dustem_plot_mlog,1/xx,yy,ppositions=position,/positive_only,xs=1,noerase=1,/overplot,charsize=1.15,xtickformat='(A1)',xr=xr,color='Black',psym=16,syms=0.8,/xlog,/ylog,yr=yr   
1bc09467   Ilyes Choubani   fixed issue with ...
2623
                                        dustem_plot_mlog,1/xx,yy,ppositions=position,/positive_only,xs=1,noerase=1,color='Black',/overplot,rms=rms,xr=xr,yr=yr,xtickformat='(A1)',/xlog,/ylog;,psym=8,syms=0.8
9cb38725   Ilyes Choubani   Fixed tests relat...
2624
2625
                                    
                                    endif
18e4331f   Ilyes Choubani   general update (f...
2626
                                    
18e4331f   Ilyes Choubani   general update (f...
2627
2628
                                endif
                                
9cb38725   Ilyes Choubani   Fixed tests relat...
2629
                                
18e4331f   Ilyes Choubani   general update (f...
2630
2631
                            endif else begin
                            
1bc09467   Ilyes Choubani   fixed issue with ...
2632
                            
0068116a   Ilyes Choubani   General update + ...
2633
                                if ct_spec ne 0 then dustem_plot_mlog,1/((*(*!dustem_data).qext).wav)(idx_spec),-((*(*!dustem_data).qext).values)(idx_spec),ppositions=position,charsize=1.15,/nodata,color='Dodger Blue',psym=16,syms=0.8,xs=1,xr=xr,noerase=1,/positive_only,xtickformat='(A1)',xtit='',/xlog,/ylog,yr=yr;,ytickformat='(A1)'
18e4331f   Ilyes Choubani   general update (f...
2634
                                    
1bc09467   Ilyes Choubani   fixed issue with ...
2635
                                
0068116a   Ilyes Choubani   General update + ...
2636
                                if ct_filt ne 0 and ct_spec eq 0 then  dustem_plot_mlog,1/((*(*!dustem_data).qext).wav)(idx_filt),-((*(*!dustem_data).qext).values)(idx_filt),/nodata,ppositions=position,charsize=1.15,color='Dodger Blue',psym=16,syms=0.8,xs=1,xr=xr,noerase=1,/positive_only,xtickformat='(A1)',xtit='',/xlog,/ylog,yr=yr;,ytickformat='(A1)'
1bc09467   Ilyes Choubani   fixed issue with ...
2637
                                
f2caf3f1   Ilyes Choubani   Debugging some er...
2638

18e4331f   Ilyes Choubani   general update (f...
2639
                            endelse                           
bc224f3e   Ilyes Choubani   Update of plottin...
2640
                        
18e4331f   Ilyes Choubani   general update (f...
2641
                        endif 
bc224f3e   Ilyes Choubani   Update of plottin...
2642
                        
bc224f3e   Ilyes Choubani   Update of plottin...
2643
                        
18e4331f   Ilyes Choubani   general update (f...
2644
                        if keyword_set(negative_only) then begin
bc224f3e   Ilyes Choubani   Update of plottin...
2645
                            
2df3360b   Ilyes Choubani   Correcting error:...
2646
                            if testngtv ne 0 then begin
18e4331f   Ilyes Choubani   general update (f...
2647
                                 
74103816   Ilyes Choubani   small update
2648
                                 plotsym, 0
18e4331f   Ilyes Choubani   general update (f...
2649
                                 
18e4331f   Ilyes Choubani   general update (f...
2650
                                 
18e4331f   Ilyes Choubani   general update (f...
2651
2652
                                 if ct_spec ne 0 then begin
                                 
0068116a   Ilyes Choubani   General update + ...
2653
2654
2655
2656
                                     rms=3.*((*(*!dustem_data).qext).sigma)(idx_spec)/2.
                                     ;dustem_plot_mlog,((*(*!dustem_data).qsed).wav)(idx_spec),-((*(*!dustem_data).qsed).values)(idx_spec),ppositions=position,charsize=1.15,color='Dodger Blue',psym=16,syms=0.8,xs=1,xr=xr,/nodata,noerase=1,/negative_only,xtickformat='(A1)',xtit='',/xlog,/ylog,yr=yr;,ytickformat='(A1)'
                                    ; if ct_spec_hdn_ngtv ne 0 then dustem_plot_mlog,((*(*!dustem_data).qsed).wav)(idx_spec),((*(*!dustem_data).qsed).values)(idx_spec),ppositions=position,/overplot,charsize=1.15,color='Dodger Blue',psym=16,syms=0.8,xs=1,xr=xr,noerase=1,/negative_only,xtickformat='(A1)',xtit='',/xlog,/ylog,yr=yr else begin
                                     dustem_plot_mlog,1/((*(*!dustem_data).qext).wav)(idx_spec),((*(*!dustem_data).qext).values)(idx_spec),ppositions=position,charsize=1.15,color='Powder Blue',psym=16,syms=0.8,xs=1,xr=xr,noerase=1,/negative_only,xtickformat='(A1)',xtit='',/xlog,/ylog,yr=yr;,ytickformat='(A1)'
1bc09467   Ilyes Choubani   fixed issue with ...
2657
                                         
9cb38725   Ilyes Choubani   Fixed tests relat...
2658
                                     ;endelse;,ytickformat='(A1)'
0068116a   Ilyes Choubani   General update + ...
2659
                                     dustem_plot_mlog,1/((*(*!dustem_data).qext).wav)(idx_spec),((*(*!dustem_data).qext).values)(idx_spec),ppositions=position,color='Powder Blue',/negative_only,noerase=1,/overplot,rms=rms,xtit='',charsize=1.15,xtickformat='(A1)',xs=1,xr=xr,/xlog,/ylog,yr=yr,ytickformat='(A1)';,psym=16,syms=0.8     
1bc09467   Ilyes Choubani   fixed issue with ...
2660
                                                                              
18e4331f   Ilyes Choubani   general update (f...
2661
2662
2663
2664
                                 endif
                                 
                                 if ct_filt ne 0 then begin
                                     
0068116a   Ilyes Choubani   General update + ...
2665
2666
2667
2668
2669
                                     rms=3.*((*(*!dustem_data).qext).sigma)(idx_filt)/2.
                                    ; dustem_plot_mlog,((*(*!dustem_data).qsed).wav)(idx_filt),-1.*((*(*!dustem_data).qsed).values)(idx_filt),ppositions=position,charsize=1.15,color='Dodger Blue',psym=16,syms=0.8,xs=1,xr=xr,/nodata,noerase=1,/negative_only,xtickformat='(A1)',xtit='',/xlog,/ylog,yr=yr;,ytickformat='(A1)'
                                     ;if ct_filt_hdn_ngtv ne 0 then  dustem_plot_mlog,((*(*!dustem_data).qsed).wav)(idx_filt),((*(*!dustem_data).qsed).values)(idx_filt),ppositions=position,charsize=1.15,color='Dodger Blue',/overplot,psym=16,syms=0.8,xs=1,xr=xr,noerase=1,/negative_only,xtickformat='(A1)',xtit='',/xlog,/ylog,yr=yr else begin
                                     if ct_spec ne 0 then dustem_plot_mlog,1/((*(*!dustem_data).qext).wav)(idx_filt),((*(*!dustem_data).qext).values)(idx_filt),ppositions=position,charsize=1.15,color='Dodger Blue',psym=16,syms=0.8,xs=1,xr=xr,noerase=1,/negative_only,xtickformat='(A1)',xtit='',/xlog,/ylog,yr=yr,ytickformat='(A1)'
                                     if ct_spec eq 0 then dustem_plot_mlog,1/((*(*!dustem_data).qext).wav)(idx_filt),((*(*!dustem_data).qext).values)(idx_filt),ppositions=position,charsize=1.15,color='Dodger Blue',psym=16,syms=0.8,xs=1,xr=xr,noerase=1,/negative_only,xtickformat='(A1)',xtit='',/xlog,/ylog,yr=yr
9cb38725   Ilyes Choubani   Fixed tests relat...
2670
                                     ;endelse ;,ytickformat='(A1)'
18e4331f   Ilyes Choubani   general update (f...
2671
                                     
0068116a   Ilyes Choubani   General update + ...
2672
                                     dustem_plot_mlog,1/((*(*!dustem_data).qext).wav)(idx_filt),((*(*!dustem_data).qext).values)(idx_filt),ppositions=position,color='Dodger Blue',/negative_only,noerase=1,/overplot,rms=rms,xtit='',charsize=1.15,xtickformat='(A1)',xs=1,xr=xr,/xlog,/ylog,yr=yr,ytickformat='(A1)'
18e4331f   Ilyes Choubani   general update (f...
2673
                                         
74103816   Ilyes Choubani   small update
2674
2675
2676
2677
2678
                                 endif
                                 
                                 if ct_hdnpts then begin
                                 
                                     if ct_spec_hdn_ngtv ne 0 then begin
0068116a   Ilyes Choubani   General update + ...
2679
2680
2681
                                         xx = (((*(*!dustem_show).qext).wav)[idx_rmv_sed])(idx_spec_hdn_ngtv)
                                         yy = (((*(*!dustem_show).qext).values)[idx_rmv_sed])(idx_spec_hdn_ngtv)
                                         rms=3.*(((*(*!dustem_show).qext).sigma)[idx_rmv_sed])(idx_spec_hdn_ngtv)/2.
74103816   Ilyes Choubani   small update
2682
2683
2684
2685
2686
2687
2688
2689
                                         
                                         dustem_plot_mlog,1/xx,yy,ppositions=position,/negative_only,xs=1,noerase=1,charsize=1.15,/overplot,xtickformat='(A1)',xr=xr,color='Black',psym=16,syms=0.8,/xlog,/ylog,yr=yr
                                         dustem_plot_mlog,1/xx,yy,ppositions=position,/negative_only,noerase=1,color='Black',/overplot,rms=rms,yr=yr,xtickformat='(A1)',xr=xr,xs=1,/xlog,/ylog;,psym=8,syms=0.8
                                     
                                     endif 
                                     
                                     if ct_filt_hdn_ngtv ne 0 then begin
                                     
0068116a   Ilyes Choubani   General update + ...
2690
2691
2692
                                         xx = (((*(*!dustem_show).qext).wav)[idx_rmv_sed])(idx_filt_hdn_ngtv)
                                         yy = (((*(*!dustem_show).qext).values)[idx_rmv_sed])(idx_filt_hdn_ngtv)
                                         rms=3.*(((*(*!dustem_show).qext).sigma)[idx_rmv_sed])(idx_filt_hdn_ngtv)/2.
74103816   Ilyes Choubani   small update
2693
2694
2695
2696
2697
2698
                                         
                                         dustem_plot_mlog,1/xx,yy,ppositions=position,/negative_only,xs=1,noerase=1,charsize=1.15,/overplot,xtickformat='(A1)',xr=xr,color='Black',psym=16,syms=0.8,/xlog,/ylog,yr=yr   
                                         dustem_plot_mlog,1/xx,yy,ppositions=position,/negative_only,xs=1,noerase=1,color='Black',/overplot,rms=rms,xr=xr,yr=yr,xtickformat='(A1)',/xlog,/ylog;,psym=8,syms=0.8
                                     
                                     endif
                                
18e4331f   Ilyes Choubani   general update (f...
2699
                                 endif 
c8368c6e   Ilyes Choubani   updating plotting...
2700
                            
c8368c6e   Ilyes Choubani   updating plotting...
2701
                            endif else begin
1bc09467   Ilyes Choubani   fixed issue with ...
2702
                            
0068116a   Ilyes Choubani   General update + ...
2703
                                if ct_spec ne 0 then dustem_plot_mlog,((*(*!dustem_data).qext).wav)(idx_spec),-((*(*!dustem_data).qext).values)(idx_spec),ppositions=position,charsize=1.15,/nodata,color='Dodger Blue',psym=16,syms=0.8,xs=1,xr=xr,noerase=1,/negative_only,xtickformat='(A1)',xtit='',/xlog,/ylog,yr=yr;,ytickformat='(A1)'
1bc09467   Ilyes Choubani   fixed issue with ...
2704
                                    
18e4331f   Ilyes Choubani   general update (f...
2705
                                
0068116a   Ilyes Choubani   General update + ...
2706
                                if ct_filt ne 0 and ct_spec eq 0 then  dustem_plot_mlog,((*(*!dustem_data).qext).wav)(idx_filt),-((*(*!dustem_data).qext).values)(idx_filt),/nodata,ppositions=position,charsize=1.15,color='Dodger Blue',psym=16,syms=0.8,xs=1,xr=xr,noerase=1,/negative_only,xtickformat='(A1)',xtit='',/xlog,/ylog,yr=yr;,ytickformat='(A1)'
18e4331f   Ilyes Choubani   general update (f...
2707
                                
18e4331f   Ilyes Choubani   general update (f...
2708
                            endelse
5f04fa07   Ilyes Choubani   general update
2709
                            ;stop
18e4331f   Ilyes Choubani   general update (f...
2710
2711
2712
2713
2714
2715
2716
2717
2718
                        endif
                        
                    
                    endelse 
                
                
                
                endelse 
            
67bd858a   Ilyes Choubani   Replication of th...
2719
            endelse ; 
18e4331f   Ilyes Choubani   general update (f...
2720
        
67bd858a   Ilyes Choubani   Replication of th...
2721
        end
18e4331f   Ilyes Choubani   general update (f...
2722
        
67bd858a   Ilyes Choubani   Replication of th...
2723
        'UEXT': begin
4b745987   Ilyes Choubani   minor update
2724
2725
2726
2727
2728
2729
2730
            IF ct_x NE 0 then begin
            
                xr=xr_x
                yr=yr_x
                
            ENDIF
                
1bc09467   Ilyes Choubani   fixed issue with ...
2731
2732
2733
2734
            vectw=DINDGEN(1001)*(alog10(1E7) - alog10(1E5))/(1000 - 1L) + alog10(1E5)
            vectw=10^vectw[1:*]
            vectw=[wavs,vectw]
            vectx=vectw*0+1
67bd858a   Ilyes Choubani   Replication of th...
2735
        
0068116a   Ilyes Choubani   General update + ...
2736
2737
            varvar=where((*(*!dustem_data).uext).values GT 0, testpstv)
            varvar=where((*(*!dustem_data).uext).values LT 0, testngtv)
67bd858a   Ilyes Choubani   Replication of th...
2738
            
18e4331f   Ilyes Choubani   general update (f...
2739
            ;stop
0068116a   Ilyes Choubani   General update + ...
2740
2741
            idx_filt=where((*(*!dustem_data).uext).filt_names NE 'SPECTRUM', ct_filt)
            idx_spec=where((*(*!dustem_data).uext).filt_names EQ 'SPECTRUM' , ct_spec)
f2caf3f1   Ilyes Choubani   Debugging some er...
2742
            
18e4331f   Ilyes Choubani   general update (f...
2743
2744
2745
2746
2747
            ;Plotting of frequency axis
            ;cgaxis, xaxis=1, xlog=1, xs=1, xminor=10;, xticklen=0.05, xrange=((!const.c*1E6/(_extra.(ind_xr)))*1E-9),charsize=1.15,title=textoidl('\nu (GHz)') 
            
            ;stop
            ;Locating all the hidden data points (spectrum+filter)
0068116a   Ilyes Choubani   General update + ...
2748
            match2,((*(*!dustem_data).uext).wav),((*(*!dustem_show).uext).wav),show_sedpts,fit_sedpts ;only show_sedpts is needed
74103816   Ilyes Choubani   small update
2749
            idx_rmv_sed=where(fit_sedpts eq -1, ct_hdnpts) ; indices of the points to hide
18e4331f   Ilyes Choubani   general update (f...
2750
            
67bd858a   Ilyes Choubani   Replication of th...
2751
            
18e4331f   Ilyes Choubani   general update (f...
2752
2753
2754
            ;#1) get the plotting keywords (pertaining to each data set) @here when the _extra structure is ready
            
            if keyword_set(nodata) then begin ;when the data is not present
f2caf3f1   Ilyes Choubani   Debugging some er...
2755
                
18e4331f   Ilyes Choubani   general update (f...
2756
2757
                if keyword_set(norm) then begin ;normalized plot
                    
f2caf3f1   Ilyes Choubani   Debugging some er...
2758
                    xtit=textoidl('1/\lambda (\mum^{-1})')
18e4331f   Ilyes Choubani   general update (f...
2759
                    if !run_pol then xtit = ''
1bc09467   Ilyes Choubani   fixed issue with ...
2760
                    cgplot,1/vectw,vectx,/xlog,/ys,xs=1,pos=position,noerase=1,xtickformat='(A1)',color='Black',xr=xr,xtit=xtit,yr=[0.0,2.0],yticks=2,ymino=2,xticklen=0.1,ytickformat='(F6.2)',charsize=1.0
18e4331f   Ilyes Choubani   general update (f...
2761
2762
2763
2764
2765
2766
                    xyouts,pospltxt[0],pospltxt[1],textoidl('norm'),color=0,/normal,charsize=1.1                        
                
                endif else begin ;normal plot
                    
                    cgplot,wavs,wavs,/nodata,/ylog,/xlog,/ys,xs=1,pos=position,noerase=1,charsize=1.15,xtickformat='(A1)',color='Powder Blue',xr=xr,xtit='',yr=yr,psym=8,syms=0.8  
                    ;cgaxis, xaxis=1 ,xlog=1 ,xrange=((!const.c*1E6/xr)*1E-9),charsize=1.15,title=textoidl('\nu (GHz)'),xticklen=0.05,xminor=10
94c4dffa   Ilyes Choubani   update + fixes fo...
2767
                    xyouts,pospltxt[0],pospltxt[1],textoidl('\tau_{UEXT}'),color=0,/normal,charsize=1.3;,charthick=2.0
18e4331f   Ilyes Choubani   general update (f...
2768
2769
2770
2771
2772
2773
2774
2775
2776
2777
2778
2779
2780
                  
                endelse  
                
            
            endif else begin ;when the data is present 
                
                if keyword_set(norm) then begin 
                    
                    if keyword_set(refresh) then begin ;The data points in the plot that are being refreshed 
                        
                        ;MAJOR LOOP OVER THE SING??? - YES BECAUSE YOU NEED TO KNOW WHICH ONE IS THE 
                
                        IF ct_spec NE 0 THEN BEGIN
f2caf3f1   Ilyes Choubani   Debugging some er...
2781
                            
0068116a   Ilyes Choubani   General update + ...
2782
                            xx=((*(*!dustem_data).uext).wav)[idx_spec]
5f04fa07   Ilyes Choubani   general update
2783
                            yy=dustem_interp[idx_spec]
0068116a   Ilyes Choubani   General update + ...
2784
                            rms=3.*((*(*!dustem_data).uext).sigma)(idx_spec)/2.
f2caf3f1   Ilyes Choubani   Debugging some er...
2785
2786
2787
                            
                            indzero = where(yy NE 0, ct_zero)
                            If ct_zero NE 0 THEN BEGIN
0068116a   Ilyes Choubani   General update + ...
2788
2789
                                cgoplot,(1/xx)[indzero],(((*(*!dustem_data).uext).values)(idx_spec))[indzero]/yy[indzero],pos=position,psym=16,color='Powder Blue',syms=0.8,noerase=1 
                                cgerrplot,(1/((*(*!dustem_data).uext).wav)(idx_spec))[indzero],((((*(*!dustem_data).uext).values)[idx_spec])[indzero]-rms[indzero])/yy[indzero],((((*(*!dustem_data).uext).values)[idx_spec])[indzero]+rms[indzero])/yy[indzero],color='Powder Blue'
f2caf3f1   Ilyes Choubani   Debugging some er...
2790
                            ENDIF
18e4331f   Ilyes Choubani   general update (f...
2791
2792
2793
2794
                        ENDIF
                        
                        IF ct_filt NE 0 THEN BEGIN
                            ;stop
0068116a   Ilyes Choubani   General update + ...
2795
                            xx=((*(*!dustem_data).uext).wav)[idx_filt]
5f04fa07   Ilyes Choubani   general update
2796
                            yy=dustem_interp[idx_filt]
0068116a   Ilyes Choubani   General update + ...
2797
                            rms=3.*((*(*!dustem_data).uext).sigma)(idx_filt)/2. 
f2caf3f1   Ilyes Choubani   Debugging some er...
2798
2799
                            indzero = where(yy NE 0, ct_zero)
                            IF ct_zero NE 0 THEN BEGIN
0068116a   Ilyes Choubani   General update + ...
2800
2801
                                cgoplot,(1/xx)[indzero],(((*(*!dustem_data).uext).values)(idx_filt))[indzero]/yy[indzero],pos=position,psym=16,color='Dodger Blue',syms=0.8,noerase=1 
                                cgerrplot,(1/((*(*!dustem_data).uext).wav)(idx_filt))[indzero],((((*(*!dustem_data).uext).values)[idx_filt])[indzero]-rms[indzero])/yy[indzero],((((*(*!dustem_data).uext).values)[idx_filt])[indzero]+rms[indzero])/yy[indzero],color='Dodger Blue' 
f2caf3f1   Ilyes Choubani   Debugging some er...
2802
                            ENDIF
18e4331f   Ilyes Choubani   general update (f...
2803
2804
2805
2806
2807
                        ENDIF
      
                        
                    endif else begin ;The data points in the plot that remain unchanged
                        ;stop
1bc09467   Ilyes Choubani   fixed issue with ...
2808
                        
f2caf3f1   Ilyes Choubani   Debugging some er...
2809
                        xtit=textoidl('1/\lambda (\mum^{-1})')
1355825c   Ilyes Choubani   General update
2810
                        ;if !run_pol then xtit = ''
afde94a3   Ilyes Choubani   general update
2811
                        cgplot,1/vectw,vectx,/xlog,/ys,xs=1,pos=position,noerase=1,color='Black',xr=xr,xtit=xtit,yr=[0.0,2.0],yticks=2,ymino=2,xticklen=0.1,ytickformat='(F6.2)',charsize=1.0
67bd858a   Ilyes Choubani   Replication of th...
2812
                        xyouts,pospltxt[0],pospltxt[1],textoidl('norm'),color=0,/normal,charsize=1.1
18e4331f   Ilyes Choubani   general update (f...
2813
2814
2815
2816
                    
                    endelse
                    
                
67bd858a   Ilyes Choubani   Replication of th...
2817
                endif else begin ; normal plot - STOPPED HERE FOR QSED
18e4331f   Ilyes Choubani   general update (f...
2818
2819
                              
                    if keyword_set(refresh) then begin ;The data points in the plot are being refreshed
53548c91   Ilyes Choubani   Display of frozen...
2820
                        
18e4331f   Ilyes Choubani   general update (f...
2821
2822
                        if keyword_set(positive_only) then begin
     
2df3360b   Ilyes Choubani   Correcting error:...
2823
                            if testpstv ne 0 then begin
f2caf3f1   Ilyes Choubani   Debugging some er...
2824
                                
18e4331f   Ilyes Choubani   general update (f...
2825
                                FOR i=0L,Ngrains-1 DO BEGIN
07372e26   Ilyes Choubani   Corrected huge pl...
2826
2827
2828
                                
                                    vecto = transpose(((st.polext.(1))[i,*]+(st.polext.(2))[i,*]))
                                    vecte = transpose(((st.ext.(1))[i,*]+(st.ext.(2))[i,*]))
5f04fa07   Ilyes Choubani   general update
2829
                                    
07372e26   Ilyes Choubani   Corrected huge pl...
2830
                                    testneq = where( vecto ne 0,countneq)
67bd858a   Ilyes Choubani   Replication of th...
2831
                                    ;stop
5f04fa07   Ilyes Choubani   general update
2832
                                    if countneq ne 0 then begin 
07372e26   Ilyes Choubani   Corrected huge pl...
2833
                                        vecfin = vecto*0.0 ;em_tot can be used here right? 
67bd858a   Ilyes Choubani   Replication of th...
2834
                                        ;stop
07372e26   Ilyes Choubani   Corrected huge pl...
2835
                                        vecfin[testneq] = (vecto[testneq])/vecte[testneq];extra_spec[testneq];(st.sed.em_tot)[testneq];(st.sed.(i+1))[testneq];*fact;(st.sed.(i+1))[testneq]
67bd858a   Ilyes Choubani   Replication of th...
2836
2837
                                        ;stop
                                        ;polar_ippsi2iqu,st.sed.(i+1)*fact,specqgrain,specugrain,st.polsed.(i+1)*fact/spec,replicate(!dustem_psi,n_elements(spec)) ;temporary solution
07372e26   Ilyes Choubani   Corrected huge pl...
2838
                                        polar_ippsi2iqu,vecte*(*!dustem_HCD)/1.0e21,specqgrain,specugrain,vecfin,replicate(!dustem_psi_ext,n_elements(vecfin)) ;temporary solution
5f04fa07   Ilyes Choubani   general update
2839
                                        
67bd858a   Ilyes Choubani   Replication of th...
2840
                                        ;stop
5f04fa07   Ilyes Choubani   general update
2841
                                        ;dustem_plot_mlog,st.polsed.wav,specqgrain,ppositions=position,/overplot,noerase=1,color=use_cols[i],xr=xr,/xlog 
1bc09467   Ilyes Choubani   fixed issue with ...
2842
                                        dustem_plot_mlog,1/st.polext.wav,specugrain,ppositions=position,/positive_only,/overplot,noerase=1,color=use_cols[i],xr=xr,/xlog,/ylog,ytickformat='(A1)',yr=yr
67bd858a   Ilyes Choubani   Replication of th...
2843
2844
                                        ;stop
                                    endif
5f04fa07   Ilyes Choubani   general update
2845
                                    ;stop
18e4331f   Ilyes Choubani   general update (f...
2846
                                ENDFOR
67bd858a   Ilyes Choubani   Replication of th...
2847
                                
18e4331f   Ilyes Choubani   general update (f...
2848
                                for i=0L,n_plgns-1 do begin
3c479f24   Ilyes Choubani   Allowing to fix p...
2849
2850
                                    
                                    IF isa((*!dustem_plugin).(0).spec) THEN BEGIN
67bd858a   Ilyes Choubani   Replication of th...
2851
2852
                                        IF total(strsplit((*(*!dustem_plugin).(i).scope),'+',/extract) EQ 'ADD_POLEXT') THEN begin
                                         
3c479f24   Ilyes Choubani   Allowing to fix p...
2853
                                            ;dustem_plot_mlog,st.polsed.wav,(*(*!dustem_plugin).(i))[*,1],ppositions=position, /overplot, noerase=1, color=clrs_plgns[i], linestyle=2,xr=xr,/xlog
1bc09467   Ilyes Choubani   fixed issue with ...
2854
                                            dustem_plot_mlog,1/st.polext.wav,(*(*!dustem_plugin).(i).spec)[*,2],ppositions=position,/positive_only,/overplot,noerase=1, color=clrs_plgns[i], linestyle=2 ,xr=xr,/xlog,/ylog,ytickformat='(A1)',yr=yr      
3c479f24   Ilyes Choubani   Allowing to fix p...
2855
                                        ENDIF
18e4331f   Ilyes Choubani   general update (f...
2856
                                    ENDIF
18e4331f   Ilyes Choubani   general update (f...
2857
2858
2859
                                endfor
                                
                                IF ct_spec NE 0 THEN BEGIN
0068116a   Ilyes Choubani   General update + ...
2860
                                    xx=((*(*!dustem_data).uext).wav)[idx_spec]
5f04fa07   Ilyes Choubani   general update
2861
                                    yy=dustem_interp[idx_spec]
18e4331f   Ilyes Choubani   general update (f...
2862
                                    ;dustem_plot_mlog,xx,yy,ppositions=position,/overplot, noerase=1, color='red',psym=7,syms=2,xr=xr,/xlog
1bc09467   Ilyes Choubani   fixed issue with ...
2863
                                    dustem_plot_mlog,1/xx,yy,ppositions=position,/positive_only, /overplot, noerase=1, color='Indian Red',psym=7,syms=2,xr=xr,/xlog,/ylog,ytickformat='(A1)',yr=yr 
18e4331f   Ilyes Choubani   general update (f...
2864
2865
2866
                                ENDIF
                                
                                IF ct_filt NE 0 THEN BEGIN
0068116a   Ilyes Choubani   General update + ...
2867
                                    xx=((*(*!dustem_data).uext).wav)[idx_filt]
5f04fa07   Ilyes Choubani   general update
2868
                                    yy=dustem_interp[idx_filt]
18e4331f   Ilyes Choubani   general update (f...
2869
                                    ;dustem_plot_mlog,xx,yy,ppositions=position, /overplot, noerase=1, color='red',psym=6,syms=2,xr=xr,/xlog
1bc09467   Ilyes Choubani   fixed issue with ...
2870
                                    dustem_plot_mlog,1/xx,yy,ppositions=position,/positive_only, /overplot, noerase=1, color='red',psym=6,syms=2,xr=xr,/xlog,/ylog,ytickformat='(A1)',yr=yr
18e4331f   Ilyes Choubani   general update (f...
2871
2872
                                ENDIF
                                
1bc09467   Ilyes Choubani   fixed issue with ...
2873
                                dustem_plot_mlog,1/st.polext.wav,dustem_spec,ppositions=position,/positive_only,/overplot,noerase=1,xr=xr,/xlog,/ylog,ytickformat='(A1)',yr=yr                                    
18e4331f   Ilyes Choubani   general update (f...
2874
2875
2876
2877
2878
2879
                            
                            endif
                                    
                        
                        endif
                        
67bd858a   Ilyes Choubani   Replication of th...
2880
                        ;stop
18e4331f   Ilyes Choubani   general update (f...
2881
                        if keyword_set(negative_only) then begin
67bd858a   Ilyes Choubani   Replication of th...
2882
                            ;stop     
2df3360b   Ilyes Choubani   Correcting error:...
2883
                            if testngtv ne 0 then begin
c8368c6e   Ilyes Choubani   updating plotting...
2884
                            
f2caf3f1   Ilyes Choubani   Debugging some er...
2885
                                    
18e4331f   Ilyes Choubani   general update (f...
2886
2887
                                ;Plotting of the spectra of the dust species
                                FOR i=0L,Ngrains-1 DO BEGIN
07372e26   Ilyes Choubani   Corrected huge pl...
2888
2889
2890
                                    vecto = transpose(((st.polext.(1))[i,*]+(st.polext.(2))[i,*]))
                                    vecte = transpose(((st.ext.(1))[i,*]+(st.ext.(2))[i,*]))
                                    testneq = where( vecto ne 0,countneq)
67bd858a   Ilyes Choubani   Replication of th...
2891
2892
                                    ;stop
                                    if countneq ne 0 then begin 
07372e26   Ilyes Choubani   Corrected huge pl...
2893
                                        vecfin = vecto*0.0 ;em_tot can be used here right? 
67bd858a   Ilyes Choubani   Replication of th...
2894
                                        ;stop
07372e26   Ilyes Choubani   Corrected huge pl...
2895
                                        vecfin[testneq] = vecto[testneq]/vecte[testneq];extra_spec[testneq];(st.sed.em_tot)[testneq];(st.sed.(i+1))[testneq];*fact;(st.sed.(i+1))[testneq] 
67bd858a   Ilyes Choubani   Replication of th...
2896
                                        ;stop    
07372e26   Ilyes Choubani   Corrected huge pl...
2897
                                        polar_ippsi2iqu,vecte*(*!dustem_HCD)/1.0e21,specqgrain,specugrain,vecfin,replicate(!dustem_psi_ext,n_elements(vecfin)) ;temporary solution
67bd858a   Ilyes Choubani   Replication of th...
2898
                                        ;stop
5f04fa07   Ilyes Choubani   general update
2899
                                        ;dustem_plot_mlog,st.polsed.wav,specqgrain,ppositions=position,/overplot,noerase=1,color=use_cols[i],xr=xr,/xlog 
1bc09467   Ilyes Choubani   fixed issue with ...
2900
                                        dustem_plot_mlog,1/st.polext.wav,specugrain,ppositions=position,/negative_only,/overplot,noerase=1,color=use_cols[i],xr=xr,/xlog,/ylog,ytickformat='(A1)',yr=yr
67bd858a   Ilyes Choubani   Replication of th...
2901
                                    endif 
18e4331f   Ilyes Choubani   general update (f...
2902
2903
                                ENDFOR
                                ;Plotting of the plugins
67bd858a   Ilyes Choubani   Replication of th...
2904
                                for i=0L,n_plgns-1 do begin
3c479f24   Ilyes Choubani   Allowing to fix p...
2905
2906
                                    IF isa((*!dustem_plugin).(0).spec) THEN BEGIN
                                    
67bd858a   Ilyes Choubani   Replication of th...
2907
2908
                                        IF total(strsplit((*(*!dustem_plugin).(i).scope),'+',/extract) EQ 'ADD_POLEXT') THEN begin
     
3c479f24   Ilyes Choubani   Allowing to fix p...
2909
                                            ;dustem_plot_mlog,st.polsed.wav,(*(*!dustem_plugin).(i))[*,1],ppositions=position, /overplot, noerase=1, color=clrs_plgns[i], linestyle=2,xr=xr,/xlog
1bc09467   Ilyes Choubani   fixed issue with ...
2910
                                            dustem_plot_mlog,1/st.polext.wav,(*(*!dustem_plugin).(i).spec)[*,2],ppositions=position,/negative_only,/overplot,noerase=1, color=clrs_plgns[i], linestyle=2 ,xr=xr,/xlog,/ylog,ytickformat='(A1)',yr=yr      
3c479f24   Ilyes Choubani   Allowing to fix p...
2911
                                        ENDIF
67bd858a   Ilyes Choubani   Replication of th...
2912
                                        
18e4331f   Ilyes Choubani   general update (f...
2913
                                    ENDIF
67bd858a   Ilyes Choubani   Replication of th...
2914
                                endfor
18e4331f   Ilyes Choubani   general update (f...
2915
2916
                                ;PLotting of the interpolates corresponding to spectrum and filter points
                                IF ct_spec NE 0 THEN BEGIN
0068116a   Ilyes Choubani   General update + ...
2917
                                    xx=((*(*!dustem_data).uext).wav)[idx_spec]
5f04fa07   Ilyes Choubani   general update
2918
                                    yy=dustem_interp[idx_spec]
18e4331f   Ilyes Choubani   general update (f...
2919
                                    ;dustem_plot_mlog,xx,yy,ppositions=position,/overplot, noerase=1, color='red',psym=7,syms=2,xr=xr,/xlog
1bc09467   Ilyes Choubani   fixed issue with ...
2920
                                    dustem_plot_mlog,1/xx,yy,ppositions=position,/negative_only, /overplot, noerase=1, color='Indian Red',psym=7,syms=2,xr=xr,/xlog,/ylog,ytickformat='(A1)',yr=yr 
18e4331f   Ilyes Choubani   general update (f...
2921
2922
2923
                                ENDIF
                                
                                IF ct_filt NE 0 THEN BEGIN
0068116a   Ilyes Choubani   General update + ...
2924
                                    xx=((*(*!dustem_data).uext).wav)[idx_filt]
5f04fa07   Ilyes Choubani   general update
2925
                                    yy=dustem_interp[idx_filt]
18e4331f   Ilyes Choubani   general update (f...
2926
                                    ;dustem_plot_mlog,xx,yy,ppositions=position, /overplot, noerase=1, color='red',psym=6,syms=2,xr=xr,/xlog
1bc09467   Ilyes Choubani   fixed issue with ...
2927
                                    dustem_plot_mlog,1/xx,yy,ppositions=position,/negative_only, /overplot, noerase=1, color='red',psym=6,syms=2,xr=xr,/xlog,/ylog,ytickformat='(A1)',yr=yr
18e4331f   Ilyes Choubani   general update (f...
2928
                                ENDIF
18e4331f   Ilyes Choubani   general update (f...
2929
                                ;Plotting of the total dust emission spectrum
1bc09467   Ilyes Choubani   fixed issue with ...
2930
                                dustem_plot_mlog,1/st.polext.wav,dustem_spec,ppositions=position,/negative_only,/overplot,noerase=1,xr=xr,/xlog,/ylog,ytickformat='(A1)',yr=yr                                    
bc224f3e   Ilyes Choubani   Update of plottin...
2931
                            
18e4331f   Ilyes Choubani   general update (f...
2932
2933
                            endif
                                    
bc224f3e   Ilyes Choubani   Update of plottin...
2934
2935
                        
                        endif
18e4331f   Ilyes Choubani   general update (f...
2936
2937
                                                   
                      ;stop             
67bd858a   Ilyes Choubani   Replication of th...
2938
                    endif else begin ;The data points in the plot that remain unchanged.; DO NOT USE AN ELSE HERE. 
bc224f3e   Ilyes Choubani   Update of plottin...
2939
                        ;stop
18e4331f   Ilyes Choubani   general update (f...
2940
                        ;cgaxis, xaxis=1,xlog=1, xs=1,charsize=1.5,xtickformat='(A1)'
94c4dffa   Ilyes Choubani   update + fixes fo...
2941
                        xyouts,pospltxt[0],pospltxt[1],textoidl('\tau_{UEXT}'),color=0,/normal,charsize=1.3;,charthick=2.0  
2df3360b   Ilyes Choubani   Correcting error:...
2942
                        ;if ct_hdnpts ne 0 then begin ;Hidden data points are present 
67bd858a   Ilyes Choubani   Replication of th...
2943
                            
2df3360b   Ilyes Choubani   Correcting error:...
2944
2945
                        ;Locating the hidden spectrum and filter data points     
                        ;SADLY I STILL DON'T HAVE A SOLUTION FOR THE PLOTTING OF NULL VALUES.                                   
0068116a   Ilyes Choubani   General update + ...
2946
2947
                        ;idx_filt_hdn = where(((*(*!dustem_show).qsed).filt_names)(idx_rmv_sed) NE 'SPECTRUM',ct_filt_hdn)
                        ;idx_spec_hdn = where(((*(*!dustem_show).qsed).filt_names)(idx_rmv_sed) EQ 'SPECTRUM',ct_spec_hdn)
9cb38725   Ilyes Choubani   Fixed tests relat...
2948
                        if ct_hdnpts then begin
0068116a   Ilyes Choubani   General update + ...
2949
2950
2951
2952
                            idx_filt_hdn_pstv = where(((*(*!dustem_show).uext).filt_names)(idx_rmv_sed) NE 'SPECTRUM' and ((*(*!dustem_show).uext).values)(idx_rmv_sed) gt 0,ct_filt_hdn_pstv)
                            idx_spec_hdn_pstv = where(((*(*!dustem_show).uext).filt_names)(idx_rmv_sed) EQ 'SPECTRUM' and ((*(*!dustem_show).uext).values)(idx_rmv_sed) gt 0,ct_spec_hdn_pstv)
                            idx_filt_hdn_ngtv = where(((*(*!dustem_show).uext).filt_names)(idx_rmv_sed) NE 'SPECTRUM' and ((*(*!dustem_show).uext).values)(idx_rmv_sed) lt 0,ct_filt_hdn_ngtv)
                            idx_spec_hdn_ngtv = where(((*(*!dustem_show).uext).filt_names)(idx_rmv_sed) EQ 'SPECTRUM' and ((*(*!dustem_show).uext).values)(idx_rmv_sed) lt 0,ct_spec_hdn_ngtv)
9cb38725   Ilyes Choubani   Fixed tests relat...
2953
                        endif
67bd858a   Ilyes Choubani   Replication of th...
2954
                        
18e4331f   Ilyes Choubani   general update (f...
2955
2956
                        
                        if keyword_set(positive_only) then begin
f2caf3f1   Ilyes Choubani   Debugging some er...
2957
                            
67bd858a   Ilyes Choubani   Replication of th...
2958
2959
2960
2961
                                
                                
                                if ct_spec ne 0 then begin
                                
0068116a   Ilyes Choubani   General update + ...
2962
2963
2964
2965
                                    rms=3.*((*(*!dustem_data).uext).sigma)(idx_spec)/2.
                                    ;dustem_plot_mlog,((*(*!dustem_data).qsed).wav)(idx_spec),-((*(*!dustem_data).qsed).values)(idx_spec),ppositions=position,charsize=1.15,color='Dodger Blue',psym=16,syms=0.8,xs=1,xr=xr,/nodata,noerase=1,/positive_only,xtickformat='(A1)',xtit='',/xlog,/ylog,yr=yr;,ytickformat='(A1)'
                                    dustem_plot_mlog,1/((*(*!dustem_data).uext).wav)(idx_spec),((*(*!dustem_data).uext).values)(idx_spec),ppositions=position,charsize=1.15,color='Powder Blue',psym=16,syms=0.8,xs=1,xr=xr,noerase=1,/positive_only,xtickformat='(A1)',xtit='',/xlog,/ylog,yr=yr;,ytickformat='(A1)'
                                    dustem_plot_mlog,1/((*(*!dustem_data).uext).wav)(idx_spec),((*(*!dustem_data).uext).values)(idx_spec),ppositions=position,color='Powder Blue',/positive_only,noerase=1,/overplot,rms=rms,xtit='',charsize=1.15,xtickformat='(A1)',xs=1,psym=16,syms=0.8,xr=xr,/xlog,/ylog,yr=yr,ytickformat='(A1)'     
67bd858a   Ilyes Choubani   Replication of th...
2966
2967
2968
2969
2970
                                 
                                endif
                                
                                if ct_filt ne 0 then begin
                                    
0068116a   Ilyes Choubani   General update + ...
2971
2972
2973
2974
2975
                                    rms=3.*((*(*!dustem_data).uext).sigma)(idx_filt)/2.
                                   ; dustem_plot_mlog,((*(*!dustem_data).qsed).wav)(idx_filt),-1.*((*(*!dustem_data).qsed).values)(idx_filt),ppositions=position,charsize=1.15,color='Dodger Blue',psym=16,syms=0.8,xs=1,xr=xr,/nodata,noerase=1,/negative_only,xtickformat='(A1)',xtit='',/xlog,/ylog,yr=yr;,ytickformat='(A1)'
                                    if ct_spec ne 0 then dustem_plot_mlog,1/((*(*!dustem_data).uext).wav)(idx_filt),((*(*!dustem_data).uext).values)(idx_filt),ppositions=position,charsize=1.15,color='Dodger Blue',psym=16,syms=0.8,xs=1,xr=xr,noerase=1,/positive_only,xtickformat='(A1)',xtit='',/xlog,/ylog,yr=yr,ytickformat='(A1)'
                                    if ct_spec eq 0 then dustem_plot_mlog,1/((*(*!dustem_data).uext).wav)(idx_filt),((*(*!dustem_data).uext).values)(idx_filt),ppositions=position,charsize=1.15,color='Dodger Blue',psym=16,syms=0.8,xs=1,xr=xr,noerase=1,/positive_only,xtickformat='(A1)',xtit='',/xlog,/ylog,yr=yr;,ytickformat='(A1)'
                                    dustem_plot_mlog,1/((*(*!dustem_data).uext).wav)(idx_filt),((*(*!dustem_data).uext).values)(idx_filt),ppositions=position,color='Dodger Blue',/positive_only,noerase=1,/overplot,rms=rms,xtit='',charsize=1.15,xtickformat='(A1)',xs=1,psym=16,syms=0.8,xr=xr,/xlog,/ylog,yr=yr,ytickformat='(A1)'
67bd858a   Ilyes Choubani   Replication of th...
2976
2977
                                        
                                endif
74103816   Ilyes Choubani   small update
2978
2979
2980
2981
2982
2983
2984
2985
2986
                                
                                
                                if testpstv ne 0 then begin
                                
                                    plotsym, 0
                                    
                                    if ct_hdnpts NE 0 then begin
                                    
                                        if ct_spec_hdn_pstv ne 0 then begin
0068116a   Ilyes Choubani   General update + ...
2987
2988
2989
                                            xx = (((*(*!dustem_show).uext).wav)[idx_rmv_sed])(idx_spec_hdn_pstv)
                                            yy = (((*(*!dustem_show).uext).values)[idx_rmv_sed])(idx_spec_hdn_pstv)
                                            rms=3.*(((*(*!dustem_show).uext).sigma)[idx_rmv_sed])(idx_spec_hdn_pstv)/2.
74103816   Ilyes Choubani   small update
2990
2991
2992
2993
2994
2995
2996
2997
                                            
                                            dustem_plot_mlog,1/xx,yy,ppositions=position,/positive_only,xs=1,noerase=1,charsize=1.15,/overplot,xtickformat='(A1)',xr=xr,color='Black',psym=16,syms=0.8,/xlog,/ylog,yr=yr
                                            dustem_plot_mlog,1/xx,yy,ppositions=position,/positive_only,noerase=1,color='Black',/overplot,rms=rms,yr=yr,xtickformat='(A1)',xr=xr,xs=1,/xlog,/ylog;,psym=8,syms=0.8
                                        
                                        endif 
                                        
                                        if ct_filt_hdn_pstv ne 0 then begin
                                        
0068116a   Ilyes Choubani   General update + ...
2998
2999
3000
                                            xx = (((*(*!dustem_show).uext).wav)[idx_rmv_sed])(idx_filt_hdn_pstv)
                                            yy = (((*(*!dustem_show).uext).values)[idx_rmv_sed])(idx_filt_hdn_pstv)
                                            rms=3.*(((*(*!dustem_show).uext).sigma)[idx_rmv_sed])(idx_filt_hdn_pstv)/2.
74103816   Ilyes Choubani   small update
3001
3002
3003
3004
3005
3006
3007
                                            
                                            dustem_plot_mlog,1/xx,yy,ppositions=position,/positive_only,xs=1,noerase=1,charsize=1.15,/overplot,xtickformat='(A1)',xr=xr,color='Black',psym=16,syms=0.8,/xlog,/ylog,yr=yr   
                                            dustem_plot_mlog,1/xx,yy,ppositions=position,/positive_only,xs=1,noerase=1,color='Black',/overplot,rms=rms,xr=xr,yr=yr,xtickformat='(A1)',/xlog,/ylog;,psym=8,syms=0.8
                                        
                                        endif
                                        
                                    endif
2df3360b   Ilyes Choubani   Correcting error:...
3008
                            endif else begin
f2caf3f1   Ilyes Choubani   Debugging some er...
3009
                                
0068116a   Ilyes Choubani   General update + ...
3010
                                if ct_spec ne 0 then dustem_plot_mlog,1/((*(*!dustem_data).uext).wav)(idx_spec),((*(*!dustem_data).uext).values)(idx_spec),ppositions=position,charsize=1.15,/nodata,color='Powder Blue',psym=16,syms=0.8,xs=1,xr=xr,noerase=1,/positive_only,xtickformat='(A1)',xtit='',/xlog,/ylog,yr=yr;,ytickformat='(A1)'
18e4331f   Ilyes Choubani   general update (f...
3011
                                    
1bc09467   Ilyes Choubani   fixed issue with ...
3012
                                
0068116a   Ilyes Choubani   General update + ...
3013
                                if ct_filt ne 0 and ct_spec eq 0 then  dustem_plot_mlog,1/((*(*!dustem_data).uext).wav)(idx_filt),-((*(*!dustem_data).uext).values)(idx_filt),/nodata,ppositions=position,charsize=1.15,color='Dodger Blue',psym=16,syms=0.8,xs=1,xr=xr,noerase=1,/positive_only,xtickformat='(A1)',xtit='',/xlog,/ylog,yr=yr;,ytickformat='(A1)'
f2caf3f1   Ilyes Choubani   Debugging some er...
3014
                                   
07372e26   Ilyes Choubani   Corrected huge pl...
3015
                                
67bd858a   Ilyes Choubani   Replication of th...
3016
                            endelse                           
18e4331f   Ilyes Choubani   general update (f...
3017
                        
f2caf3f1   Ilyes Choubani   Debugging some er...
3018
                        
18e4331f   Ilyes Choubani   general update (f...
3019
3020
                        endif 
                        
67bd858a   Ilyes Choubani   Replication of th...
3021
                        
18e4331f   Ilyes Choubani   general update (f...
3022
                        if keyword_set(negative_only) then begin
67bd858a   Ilyes Choubani   Replication of th...
3023
                            
2df3360b   Ilyes Choubani   Correcting error:...
3024
                            if testngtv ne 0 then begin
18e4331f   Ilyes Choubani   general update (f...
3025
                                 
74103816   Ilyes Choubani   small update
3026
                                 plotsym, 0
18e4331f   Ilyes Choubani   general update (f...
3027
                                 
18e4331f   Ilyes Choubani   general update (f...
3028
                                 
67bd858a   Ilyes Choubani   Replication of th...
3029
                                 if ct_spec ne 0 then begin
f2caf3f1   Ilyes Choubani   Debugging some er...
3030
                                     
0068116a   Ilyes Choubani   General update + ...
3031
3032
3033
3034
                                     rms=3.*((*(*!dustem_data).uext).sigma)(idx_spec)/2.
                                     ;dustem_plot_mlog,((*(*!dustem_data).qsed).wav)(idx_spec),-((*(*!dustem_data).qsed).values)(idx_spec),ppositions=position,charsize=1.15,color='Dodger Blue',psym=16,syms=0.8,xs=1,xr=xr,/nodata,noerase=1,/negative_only,xtickformat='(A1)',xtit='',/xlog,/ylog,yr=yr;,ytickformat='(A1)'
                                    ; if ct_spec_hdn_ngtv ne 0 then dustem_plot_mlog,((*(*!dustem_data).qsed).wav)(idx_spec),((*(*!dustem_data).qsed).values)(idx_spec),ppositions=position,/overplot,charsize=1.15,color='Dodger Blue',psym=16,syms=0.8,xs=1,xr=xr,noerase=1,/negative_only,xtickformat='(A1)',xtit='',/xlog,/ylog,yr=yr else begin
                                     dustem_plot_mlog,1/((*(*!dustem_data).uext).wav)(idx_spec),((*(*!dustem_data).uext).values)(idx_spec),ppositions=position,charsize=1.15,color='Powder Blue',psym=16,syms=0.8,xs=1,xr=xr,noerase=1,/negative_only,xtickformat='(A1)',xtit='',/xlog,/ylog,yr=yr;,ytickformat='(A1)'
67bd858a   Ilyes Choubani   Replication of th...
3035
                                     ;endelse;,ytickformat='(A1)'
0068116a   Ilyes Choubani   General update + ...
3036
                                     dustem_plot_mlog,1/((*(*!dustem_data).uext).wav)(idx_spec),((*(*!dustem_data).uext).values)(idx_spec),ppositions=position,color='Powder Blue',/negative_only,noerase=1,/overplot,rms=rms,xtit='',charsize=1.15,xtickformat='(A1)',xs=1,xr=xr,/xlog,/ylog,yr=yr,ytickformat='(A1)';,psym=16,syms=0.8     
67bd858a   Ilyes Choubani   Replication of th...
3037
3038
3039
3040
3041
                                  
                                 endif
                                 
                                 if ct_filt ne 0 then begin
                                     
0068116a   Ilyes Choubani   General update + ...
3042
3043
3044
3045
3046
                                     rms=3.*((*(*!dustem_data).uext).sigma)(idx_filt)/2.
                                    ; dustem_plot_mlog,((*(*!dustem_data).qsed).wav)(idx_filt),-1.*((*(*!dustem_data).qsed).values)(idx_filt),ppositions=position,charsize=1.15,color='Dodger Blue',psym=16,syms=0.8,xs=1,xr=xr,/nodata,noerase=1,/negative_only,xtickformat='(A1)',xtit='',/xlog,/ylog,yr=yr;,ytickformat='(A1)'
                                     ;if ct_filt_hdn_ngtv ne 0 then  dustem_plot_mlog,((*(*!dustem_data).qsed).wav)(idx_filt),((*(*!dustem_data).qsed).values)(idx_filt),ppositions=position,charsize=1.15,color='Dodger Blue',/overplot,psym=16,syms=0.8,xs=1,xr=xr,noerase=1,/negative_only,xtickformat='(A1)',xtit='',/xlog,/ylog,yr=yr else begin
                                     if ct_spec ne 0 then dustem_plot_mlog,1/((*(*!dustem_data).uext).wav)(idx_filt),((*(*!dustem_data).uext).values)(idx_filt),ppositions=position,charsize=1.15,color='Dodger Blue',psym=16,syms=0.8,xs=1,xr=xr,noerase=1,/negative_only,xtickformat='(A1)',xtit='',/xlog,/ylog,yr=yr,ytickformat='(A1)'
                                     if ct_spec eq 0 then dustem_plot_mlog,1/((*(*!dustem_data).uext).wav)(idx_filt),((*(*!dustem_data).uext).values)(idx_filt),ppositions=position,charsize=1.15,color='Dodger Blue',psym=16,syms=0.8,xs=1,xr=xr,noerase=1,/negative_only,xtickformat='(A1)',xtit='',/xlog,/ylog,yr=yr;,ytickformat='(A1)'
67bd858a   Ilyes Choubani   Replication of th...
3047
3048
                                     ;endelse ;,ytickformat='(A1)'
                                     
0068116a   Ilyes Choubani   General update + ...
3049
                                     dustem_plot_mlog,1/((*(*!dustem_data).uext).wav)(idx_filt),((*(*!dustem_data).uext).values)(idx_filt),ppositions=position,color='Dodger Blue',/negative_only,noerase=1,/overplot,rms=rms,xtit='',charsize=1.15,xtickformat='(A1)',xs=1,xr=xr,/xlog,/ylog,yr=yr,ytickformat='(A1)'
67bd858a   Ilyes Choubani   Replication of th...
3050
                                         
9cb38725   Ilyes Choubani   Fixed tests relat...
3051
                                 endif 
74103816   Ilyes Choubani   small update
3052
3053
3054
3055
                                 
                                 if ct_hdnpts NE 0 then begin
                                 
                                     if ct_spec_hdn_ngtv ne 0 then begin
0068116a   Ilyes Choubani   General update + ...
3056
3057
3058
                                         xx = (((*(*!dustem_show).uext).wav)[idx_rmv_sed])(idx_spec_hdn_ngtv)
                                         yy = (((*(*!dustem_show).uext).values)[idx_rmv_sed])(idx_spec_hdn_ngtv)
                                         rms=3.*(((*(*!dustem_show).uext).sigma)[idx_rmv_sed])(idx_spec_hdn_ngtv)/2.
74103816   Ilyes Choubani   small update
3059
3060
3061
3062
3063
3064
3065
3066
                                         
                                         dustem_plot_mlog,1/xx,yy,ppositions=position,/negative_only,xs=1,noerase=1,charsize=1.15,/overplot,xtickformat='(A1)',xr=xr,color='Black',psym=16,syms=0.8,/xlog,/ylog,yr=yr
                                         dustem_plot_mlog,1/xx,yy,ppositions=position,/negative_only,noerase=1,color='Black',/overplot,rms=rms,yr=yr,xtickformat='(A1)',xr=xr,xs=1,/xlog,/ylog;,psym=8,syms=0.8
                                     
                                     endif 
                                     
                                     if ct_filt_hdn_ngtv ne 0 then begin
                                     
0068116a   Ilyes Choubani   General update + ...
3067
3068
3069
                                         xx = (((*(*!dustem_show).uext).wav)[idx_rmv_sed])(idx_filt_hdn_ngtv)
                                         yy = (((*(*!dustem_show).uext).values)[idx_rmv_sed])(idx_filt_hdn_ngtv)
                                         rms=3.*(((*(*!dustem_show).uext).sigma)[idx_rmv_sed])(idx_filt_hdn_ngtv)/2.
74103816   Ilyes Choubani   small update
3070
3071
3072
3073
3074
3075
3076
                                         
                                         dustem_plot_mlog,1/xx,yy,ppositions=position,/negative_only,xs=1,noerase=1,charsize=1.15,/overplot,xtickformat='(A1)',xr=xr,color='Black',psym=16,syms=0.8,/xlog,/ylog,yr=yr   
                                         dustem_plot_mlog,1/xx,yy,ppositions=position,/negative_only,xs=1,noerase=1,color='Black',/overplot,rms=rms,xr=xr,yr=yr,xtickformat='(A1)',/xlog,/ylog;,psym=8,syms=0.8
                                     
                                     endif
                                
                                 endif
bc224f3e   Ilyes Choubani   Update of plottin...
3077
                            
2df3360b   Ilyes Choubani   Correcting error:...
3078
                            endif else begin
f2caf3f1   Ilyes Choubani   Debugging some er...
3079
                                
0068116a   Ilyes Choubani   General update + ...
3080
                                if ct_spec ne 0 then dustem_plot_mlog,1/((*(*!dustem_data).uext).wav)(idx_spec),-((*(*!dustem_data).uext).values)(idx_spec),ppositions=position,charsize=1.15,/nodata,color='Powder Blue',psym=16,syms=0.8,xs=1,xr=xr,noerase=1,/negative_only,xtickformat='(A1)',xtit='',/xlog,/ylog,yr=yr;,ytickformat='(A1)'
1bc09467   Ilyes Choubani   fixed issue with ...
3081
                                    
18e4331f   Ilyes Choubani   general update (f...
3082
                                
0068116a   Ilyes Choubani   General update + ...
3083
                                if ct_filt ne 0 and ct_spec eq 0 then  dustem_plot_mlog,1/((*(*!dustem_data).uext).wav)(idx_filt),-((*(*!dustem_data).uext).values)(idx_filt),/nodata,ppositions=position,charsize=1.15,color='Dodger Blue',psym=16,syms=0.8,xs=1,xr=xr,noerase=1,/negative_only,xtickformat='(A1)',xtit='',/xlog,/ylog,yr=yr;,ytickformat='(A1)'
07372e26   Ilyes Choubani   Corrected huge pl...
3084
                                
f2caf3f1   Ilyes Choubani   Debugging some er...
3085
                        
2df3360b   Ilyes Choubani   Correcting error:...
3086
                            endelse
5f04fa07   Ilyes Choubani   general update
3087
                            ;stop
18e4331f   Ilyes Choubani   general update (f...
3088
                        endif
bc224f3e   Ilyes Choubani   Update of plottin...
3089
3090
3091
3092
                        
                    
                    endelse 
                
bc224f3e   Ilyes Choubani   Update of plottin...
3093
3094
                endelse 
            
67bd858a   Ilyes Choubani   Replication of th...
3095
            endelse 
b5314324   Ilyes Choubani   updating the plot...
3096
3097
        
        end
5f04fa07   Ilyes Choubani   general update
3098
3099
        
        'PARAMETERS':begin ;needs the followingd data (errors+res+formats)
e9bb0ce2   Ilyes Choubani   Correcting small ...
3100
         
5f04fa07   Ilyes Choubani   general update
3101
3102
3103
3104
3105
            p_dim = extra_spec
            ;stop
            Npar=n_elements(p_dim)
            
            if keyword_set(refresh) then begin ;data in the parameter window that is being refreshed
53548c91   Ilyes Choubani   Display of frozen...
3106
    
5f04fa07   Ilyes Choubani   general update
3107
                k=0    
5f04fa07   Ilyes Choubani   general update
3108
                
53548c91   Ilyes Choubani   Display of frozen...
3109
3110
3111
3112
3113
3114
3115
                    
                IF isa((*!dustem_fit).fixed_param_descs) THEN BEGIN
                    
                    Nfpar = n_elements((*(*!dustem_fit).fixed_param_descs))
                    res = (*(*!dustem_fit).fixed_param_init_values)
                    
                    FOR i=0L,Nfpar-1 DO BEGIN
5f04fa07   Ilyes Choubani   general update
3116
                        
53548c91   Ilyes Choubani   Display of frozen...
3117
3118
3119
3120
3121
3122
3123
                        parameter_description = (*(*!dustem_fit).fixed_param_descs)[i]     
                        parameter_type = dustem_parameter_description2type(parameter_description,string_name=string_name)
                        ;Not sure about the wrapper data type that is mentioned in this procedure
                        IF parameter_type NE 'PLUGIN' THEN BEGIN                       
                            yypos = 0.8 - k*0.09
                            k+=1
                        ENDIF 
5f04fa07   Ilyes Choubani   general update
3124
                        
53548c91   Ilyes Choubani   Display of frozen...
3125
3126
3127
3128
3129
3130
3131
3132
3133
3134
3135
3136
3137
3138
3139
3140
                    ENDFOR  
                                
                     
                ENDIF
                
                
                prms_dscs = (*(*!dustem_fit).param_descs)
                prms_tps = strarr(n_elements(prms_dscs))
                
                for i=0L,n_elements(prms_dscs)-1 do begin
                    prms_tps[i] = dustem_parameter_description2type(prms_dscs[i])
                endfor
                
                testprms = where(prms_tps ne 'PLUGIN', ct_data)
                if ct_data ne 0 then begin
                
8fbdb4c3   Ilyes Choubani   Fixed minor 0/0 e...
3141
                    if ~isa(yypos) then yypos = 0.8 else yypos-=0.22 ;not sure about this
fcb6eade   Ilyes Choubani   general update - ...
3142
3143
                    
                    
53548c91   Ilyes Choubani   Display of frozen...
3144
3145
3146
3147
3148
                    res = dustem_interp
                    errors = dustem_spec
                    yypostmp = yypos
                    k=0
                    FOR i=0L,Npar-1 DO BEGIN   
fcb6eade   Ilyes Choubani   general update - ...
3149
                      
53548c91   Ilyes Choubani   Display of frozen...
3150
3151
3152
3153
3154
                      parameter_description = (*(*!dustem_fit).param_descs)[i]
                      parameter_type = dustem_parameter_description2type(parameter_description,string_name=string_name)
                      testpop = STRUPCASE(strmid(strtrim(parameter_description,2),3,1,/reverse_offset)) EQ 'O'
                          
                        IF parameter_type EQ 'FORTRAN' and  testpop then begin
fcb6eade   Ilyes Choubani   general update - ...
3155
                          
53548c91   Ilyes Choubani   Display of frozen...
3156
3157
3158
3159
3160
3161
3162
3163
3164
3165
3166
3167
3168
3169
3170
3171
3172
3173
3174
3175
3176
3177
3178
3179
                            indpop=fix(STRUPCASE(strmid(strtrim(parameter_description,2),12,1,/reverse_offset)))
                            string_name=(((*!dustem_params). GRAINS).grain_type)[indpop]
                            
                            ;choosing a step of 0.03 in norm coordinates 
                            yypos = yypostmp - k*0.09 
                            xxpos = 0.0
                            
                            ;original line
                            ;str=string(string_name+' = ',format=frmt0)+string(res[i],format=frmt1)
                            
                            str = strtrim(string(string_name+' = ',format=frmt0),2)+ string(res[i],format=frmt1) + textoidl(' \pm ') +string(errors(i),format=frmt1)
                            ;will this work? 
                            cgtext, xxpos, yypos, str, charsize=-1, width=thiswidth, /normal
                            xxpos = (1-thiswidth)/2
                            str = strtrim(string(string_name+' = ',format=frmt0),2)
                            cgtext, xxpos, yypos, str, charsize=-1, width=thiswidth, /normal
                            xxpos+= thiswidth 
                            
                            str= string(res[i],format=frmt1) + textoidl(' \pm ') + string(errors(i),format=frmt1)
                            ;stop
                            xyouts,xxpos,yypos,str,color=0,/normal,charsize=1.
                            k+=1            
                            
                        ENDIF
e9bb0ce2   Ilyes Choubani   Correcting small ...
3180
                        
fcb6eade   Ilyes Choubani   general update - ...
3181
                        
53548c91   Ilyes Choubani   Display of frozen...
3182
3183
3184
3185
3186
3187
3188
3189
3190
3191
3192
3193
3194
3195
3196
3197
3198
3199
3200
3201
3202
3203
3204
3205
3206
3207
                        IF parameter_type EQ 'FORTRAN' and ~testpop then begin
                          
                            ;indpop=fix(STRUPCASE(strmid(strtrim(parameter_description,2),12,1,/reverse_offset)))
                            ;string_name=(((*!dustem_params). GRAINS).grain_type)[indpop]
                              
                            
                            yypos = yypostmp - k*0.09 
                            xxpos = 0.0
                            
                            ;original line
                            ;str=string(string_name+' = ',format=frmt0)+string(res[i],format=frmt1)
                            
                            str = strtrim(string(string_name+' = ',format=frmt0),2)+ string(res[i],format=frmt1) + textoidl(' \pm ') +string(errors(i),format=frmt1)
                            ;will this work? 
                            cgtext, xxpos, yypos, str, charsize=-1, width=thiswidth, /normal
                            xxpos = (1-thiswidth)/2
                            str = strtrim(string(string_name+' = ',format=frmt0),2)
                            cgtext, xxpos, yypos, str, charsize=-1, width=thiswidth, /normal
                            xxpos+= thiswidth 
                            
                            str= string(res[i],format=frmt1) + textoidl(' \pm ') + string(errors(i),format=frmt1)
                            ;stop
                            xyouts,xxpos,yypos,str,color=0,/normal,charsize=1.
                            k+=1            
                            
                        ENDIF
fcb6eade   Ilyes Choubani   general update - ...
3208
                        
fcb6eade   Ilyes Choubani   general update - ...
3209
                        
53548c91   Ilyes Choubani   Display of frozen...
3210
                    ENDFOR        
fcb6eade   Ilyes Choubani   general update - ...
3211
                    
53548c91   Ilyes Choubani   Display of frozen...
3212
                ENDIF                        
5f04fa07   Ilyes Choubani   general update
3213
3214
                
            endif else begin ;data in the parameter window that is unchanged 
e9bb0ce2   Ilyes Choubani   Correcting small ...
3215
                
e9bb0ce2   Ilyes Choubani   Correcting small ...
3216
3217
3218
                ;Trying to gather information on the fixed parameters
                ;Two pointers assuming one is sufficient for the following condition (unless dustem_init_fixed_parameters)
                ;WILL THIS WORK?
53548c91   Ilyes Choubani   Display of frozen...
3219
                
e9bb0ce2   Ilyes Choubani   Correcting small ...
3220
3221
3222
3223
3224
                IF isa((*!dustem_fit).fixed_param_descs) THEN BEGIN
                    
                    Nfpar = n_elements((*(*!dustem_fit).fixed_param_descs))
                    res = (*(*!dustem_fit).fixed_param_init_values)
                    k = 0
53548c91   Ilyes Choubani   Display of frozen...
3225
3226
3227
3228
3229
                    xxpos = 0.0
                    yypos = 0.9
                    ;xxpos = 0.0 ;might need to be modified
                    cgtext, xxpos, yypos, '-FROZEN-', charsize=-1, width=thiswidth, /normal  
                    xxpos=(1-thiswidth)/2
8fbdb4c3   Ilyes Choubani   Fixed minor 0/0 e...
3230
                    xyouts, xxpos, yypos, '-FROZEN-', charsize=1.2, /normal, color=0
e9bb0ce2   Ilyes Choubani   Correcting small ...
3231
3232
3233
3234
3235
                    
                    FOR i=0L,Nfpar-1 DO BEGIN
                        
                        parameter_description = (*(*!dustem_fit).fixed_param_descs)[i]     
                        parameter_type = dustem_parameter_description2type(parameter_description,string_name=string_name)
53548c91   Ilyes Choubani   Display of frozen...
3236
3237
3238
3239
3240
3241
3242
3243
3244
                        testpop = STRUPCASE(strmid(strtrim(parameter_description,2),3,1,/reverse_offset)) EQ 'O'
                        IF parameter_type NE 'PLUGIN' THEN BEGIN
                        
                            IF  parameter_type EQ 'FORTRAN' and  testpop then begin
                                 
                                indpop=fix(STRUPCASE(strmid(strtrim(parameter_description,2),12,1,/reverse_offset)))
                                string_name=(((*!dustem_params). GRAINS).grain_type)[indpop]
                                
                            ENDIF
e9bb0ce2   Ilyes Choubani   Correcting small ...
3245
                            
53548c91   Ilyes Choubani   Display of frozen...
3246
3247
3248
3249
3250
3251
3252
3253
3254
3255
                            yypos = 0.8 - k*0.09
                            xxpos = 0.0  
                            
                            str=strtrim(string(string_name+' = ',format=frmt0),2)
                            str1=str+string(res[i],format=frmt1)
                            cgtext, xxpos, yypos, str1, charsize=-1, width=thiswidth, /normal
                            xxpos=(1-thiswidth)/2 
                            ;stop
                            xyouts,xxpos,yypos,str1,color=0,/normal,charsize=1.
                            k+=1
e9bb0ce2   Ilyes Choubani   Correcting small ...
3256
                        
53548c91   Ilyes Choubani   Display of frozen...
3257
                        ENDIF    
e9bb0ce2   Ilyes Choubani   Correcting small ...
3258
                         
53548c91   Ilyes Choubani   Display of frozen...
3259
                    ENDFOR  
e9bb0ce2   Ilyes Choubani   Correcting small ...
3260
3261
3262
3263
                     
                ENDIF
                
                
e9bb0ce2   Ilyes Choubani   Correcting small ...
3264
                
5f04fa07   Ilyes Choubani   general update
3265
                ;stop
0c487640   Ilyes Choubani   corrected missing...
3266
                xxpos = 0.0;might need to be modified
53548c91   Ilyes Choubani   Display of frozen...
3267
3268
3269
3270
3271
3272
3273
3274
3275
3276
3277
3278
3279
3280
                
                ;test so that this string isn't displayed when there are no free parameters: 
                
                prms_dscs = (*(*!dustem_fit).param_descs)
                prms_tps = strarr(n_elements(prms_dscs))
                
                for i=0L,n_elements(prms_dscs)-1 do begin
                    prms_tps[i] = dustem_parameter_description2type(prms_dscs[i])
                endfor
                
                testprms = where(prms_tps ne 'PLUGIN', ct_data)
                
                IF ct_data ne 0 then begin
                
8fbdb4c3   Ilyes Choubani   Fixed minor 0/0 e...
3281
                    if ~isa(yypos) then yypos = 0.9 else yypos-=0.1*1.2 ;not sure about this
53548c91   Ilyes Choubani   Display of frozen...
3282
3283
3284
3285
                
                    cgtext, xxpos, yypos, '-FREE-', charsize=-1,width=thiswidth, /normal

                    xxpos=(1-thiswidth)/2
8fbdb4c3   Ilyes Choubani   Fixed minor 0/0 e...
3286
                    xyouts, xxpos, yypos, '-FREE-', charsize=1.2, /normal,color=0
53548c91   Ilyes Choubani   Display of frozen...
3287
3288
3289
3290
3291
                
                    ;stop
                    k=0   
                    res = dustem_interp
                    errors = dustem_spec
5f04fa07   Ilyes Choubani   general update
3292
                ;stop
53548c91   Ilyes Choubani   Display of frozen...
3293
3294
3295
3296
3297
3298
3299
3300
3301
3302
                
                    yypos-=0.1
                    yypostmp = yypos
                    FOR i=0L,Npar-1 DO BEGIN  
                      
                      parameter_description = (*(*!dustem_fit).param_descs)[i]
                      parameter_type = dustem_parameter_description2type(parameter_description,string_name=string_name)
                      testpop = STRUPCASE(strmid(strtrim(parameter_description,2),3,1,/reverse_offset)) EQ 'O'
                      ;stop  
                      ;STRUPCASE(strmid(strtrim(parameter_description,2),0,18)) eq '(*!DUSTEM_PARAMS).'  
e9bb0ce2   Ilyes Choubani   Correcting small ...
3303
                        
53548c91   Ilyes Choubani   Display of frozen...
3304
3305
3306
3307
3308
3309
3310
3311
3312
3313
3314
3315
3316
3317
3318
3319
3320
3321
3322
3323
3324
3325
3326
3327
                      IF  parameter_type EQ 'FORTRAN' and testpop then begin
                             
                            indpop=fix(STRUPCASE(strmid(strtrim(parameter_description,2),12,1,/reverse_offset)))
                            string_name=(((*!dustem_params). GRAINS).grain_type)[indpop]
                            
                            
                            yypos = yypostmp -  k*0.09
                            xxpos = 0.0    
                                                        
                            str=strtrim(string(string_name+' = ',format=frmt0),2)
                            ;stop    
                            str1=str+string(res[i],format=frmt1)+textoidl(' \pm ')+string(errors(i),format=frmt1)
                            ;stop
                            cgtext, xxpos, yypos, str1, charsize=-1, width=thiswidth, /normal
                            xxpos=(1-thiswidth)/2 
                            ;stop
                            xyouts,xxpos,yypos,str,color=0,/normal,charsize=1.
                            
                            k+=1            
                            ;stop
                      ENDIF
                      
                      ;STRUPCASE(strmid(strtrim(parameter_description,2),0,18)) eq '(*!DUSTEM_PARAMS).'
                      IF  parameter_type EQ 'FORTRAN' and ~testpop then begin
5f04fa07   Ilyes Choubani   general update
3328
                        
53548c91   Ilyes Choubani   Display of frozen...
3329
3330
3331
3332
3333
3334
3335
3336
3337
3338
3339
3340
3341
3342
3343
3344
3345
3346
3347
3348
3349
3350
                          ;indpop=fix(STRUPCASE(strmid(strtrim(parameter_description,2),12,1,/reverse_offset)))
                          ;string_name=(((*!dustem_params). GRAINS).grain_type)[indpop]
                          ;stop
                          ;choosing a step of 0.03 in norm coordinates
                           
                          yypos = yypostmp - k*0.09
                          xxpos = 0.0    
                                                      
                          str=strtrim(string(string_name+' = ',format=frmt0),2)
                          ;stop    
                          str1=str+string(res[i],format=frmt1)+textoidl(' \pm ')+string(errors(i),format=frmt1)
                          ;stop
                          cgtext, xxpos, yypos, str1, charsize=-1, width=thiswidth, /normal
                          xxpos=(1-thiswidth)/2 
                          ;stop
                          xyouts,xxpos,yypos,str,color=0,/normal,charsize=1.
                          
                          k+=1            
                          ;stop
                    ENDIF
                    
                    ENDFOR
fcb6eade   Ilyes Choubani   general update - ...
3351
                    
fcb6eade   Ilyes Choubani   general update - ...
3352
                ENDIF
53548c91   Ilyes Choubani   Display of frozen...
3353
                    
5f04fa07   Ilyes Choubani   general update
3354
3355
3356
3357
3358
3359
3360
3361
3362
3363
3364
3365
3366
                
            endelse
        
        end
        
        'PLUGINS':begin ;NOT SO SURE ABOUT THIS BLOCK . TEST IT WHEN YOU GET HOME
           
            p_dim = extra_spec
        
            Npar=n_elements(p_dim)
        
            if keyword_set(refresh) then begin ;(REFRESHED RUN) 
                
53548c91   Ilyes Choubani   Display of frozen...
3367
3368
3369
3370
3371
3372
                IF isa((*!dustem_fit).fixed_param_descs) THEN BEGIN
                    
                    Nfpar = n_elements((*(*!dustem_fit).fixed_param_descs))
                    res = (*(*!dustem_fit).fixed_param_init_values)
                    k=0
                    FOR i=0L,Nfpar-1 DO BEGIN
5f04fa07   Ilyes Choubani   general update
3373
                        
53548c91   Ilyes Choubani   Display of frozen...
3374
3375
3376
3377
3378
3379
3380
3381
3382
3383
3384
3385
3386
3387
3388
3389
3390
3391
3392
3393
3394
3395
3396
3397
3398
                        parameter_description = (*(*!dustem_fit).fixed_param_descs)[i]     
                        parameter_type = dustem_parameter_description2type(parameter_description,string_name=string_name)
                        ;Not sure about the wrapper data type that is mentioned in this procedure
                        IF parameter_type EQ 'PLUGIN' THEN BEGIN                       
                            yypos = 0.8 - k*0.09
                            k+=1
                        ENDIF 
                        
                    ENDFOR  
                                
                     
                ENDIF
                
                
                prms_dscs = (*(*!dustem_fit).param_descs)
                prms_tps = strarr(n_elements(prms_dscs))
                
                for i=0L,n_elements(prms_dscs)-1 do begin
                    prms_tps[i] = dustem_parameter_description2type(prms_dscs[i])
                endfor
                
                testprms = where(prms_tps EQ 'PLUGIN', ct_data)
                
                if ct_data ne 0 then begin
                
8fbdb4c3   Ilyes Choubani   Fixed minor 0/0 e...
3399
                    if ~isa(yypos) then yypos = 0.8 else yypos-=0.22 ;not sure about this
53548c91   Ilyes Choubani   Display of frozen...
3400
3401
3402
3403
3404
3405
3406
3407
3408
3409
3410
3411
3412
3413
3414
3415
3416
3417
3418
3419
3420
3421
3422
3423
3424
3425
3426
3427
3428
3429
3430
3431
3432
                    
                    
                    k=0
                    res = dustem_interp
                    errors = dustem_spec
                    yypostmp = yypos
                    
                    FOR i=0L,Npar-1 DO BEGIN  
                      ;stop
                        parameter_description = (*(*!dustem_fit).param_descs)[i]
                        parameter_type = dustem_parameter_description2type(parameter_description,string_name=string_name)
                      
                        IF parameter_type EQ 'PLUGIN' THEN BEGIN
                            
                            ii = strsplit(string_name,'_',count=countx) & ii = ii(countx-1)-1 ; Locating the last underscore to automate the extraction of the plugin's keyword 
                            mm = where(tag_names(*!dustem_plugin) eq strupcase(strmid(string_name,7,ii-7))) ;,coun) ; Selecting a plugin through matching the string name of the plugin form the scope system variable with the one read from the parameter description vector
                            prmtg = (*(*!dustem_plugin).(mm).paramtag)
                            indtg = (strmid(string_name,ii+1)) & indtg = strmid(indtg,0,/reverse_offset)     
                            indtg = fix(indtg)
                            prmtg = prmtg[indtg-1] 
                            yypos = yypostmp - k*0.09
                            xxpos = 0.0 
                            
                            str = strtrim(string(strmid(string_name,7,ii-7)+' ['+strmid(string_name,ii+1)+']: '+prmtg+' = ',format=frmt0),2)
                            str1 = str+string(res[i],format=frmt1)+textoidl(' \pm ')+string(errors(i),format=frmt1)
                            cgtext, xxpos, yypos, str1, charsize=-1, width=thiswidth, /normal
                            xxpos=(1-thiswidth)/2
                            cgtext, xxpos, yypos, str, charsize=-1, width=thiswidth, /normal
                            xxpos+=thiswidth;(1-thiswidth)/2
                            str = string(res[i],format=frmt1)+textoidl(' \pm ')+string(errors(i),format=frmt1)
    
                            xyouts,xxpos,yypos,str,color=0,/normal,charsize=1.
                            k+=1
5f04fa07   Ilyes Choubani   general update
3433
                            
53548c91   Ilyes Choubani   Display of frozen...
3434
3435
3436
3437
3438
3439
                        ENDIF          
                                
                    
                    ENDFOR
                
             ENDIF
5f04fa07   Ilyes Choubani   general update
3440
                
e9bb0ce2   Ilyes Choubani   Correcting small ...
3441
            endif else begin ;(FROZEN RUN = title strings + fixed plugins (TBDONE))
5f04fa07   Ilyes Choubani   general update
3442
                
53548c91   Ilyes Choubani   Display of frozen...
3443
3444
3445
                
                
                IF isa((*!dustem_fit).fixed_param_descs) THEN BEGIN
5f04fa07   Ilyes Choubani   general update
3446
                    
53548c91   Ilyes Choubani   Display of frozen...
3447
3448
                    Nfpar = n_elements((*(*!dustem_fit).fixed_param_descs))
                    res = (*(*!dustem_fit).fixed_param_init_values)
5f04fa07   Ilyes Choubani   general update
3449
                    
0068116a   Ilyes Choubani   General update + ...
3450
                    iii=0
74103816   Ilyes Choubani   small update
3451
3452
3453
3454
                    FOR i=0L,Nfpar-1 DO BEGIN
                        
                        parameter_description = (*(*!dustem_fit).fixed_param_descs)[i]     
                        parameter_type = dustem_parameter_description2type(parameter_description,string_name=string_name)
0068116a   Ilyes Choubani   General update + ...
3455
                        if parameter_type EQ 'PLUGIN' then iii+=1 
74103816   Ilyes Choubani   small update
3456
3457
3458
3459
3460
3461
3462
3463
3464
3465
3466
                        
                    ENDFOR
                    k = 0
                    if iii ne 0 then begin
                        xxpos = 0.0
                        yypos = 0.9
                        ;xxpos = 0.0 ;might need to be modified
                        cgtext, xxpos, yypos, '-FROZEN-', charsize=-1, width=thiswidth, /normal  
                        xxpos=(1-thiswidth)/2
                        xyouts, xxpos, yypos, '-FROZEN-', charsize=1.2, /normal, color=0
                    endif
53548c91   Ilyes Choubani   Display of frozen...
3467
3468
3469
3470
3471
3472
3473
                    FOR i=0L,Nfpar-1 DO BEGIN
                        
                        parameter_description = (*(*!dustem_fit).fixed_param_descs)[i]     
                        parameter_type = dustem_parameter_description2type(parameter_description,string_name=string_name)
                        testpop = STRUPCASE(strmid(strtrim(parameter_description,2),3,1,/reverse_offset)) EQ 'O'
                        
                        IF parameter_type EQ 'PLUGIN' THEN BEGIN
5f04fa07   Ilyes Choubani   general update
3474
                        
53548c91   Ilyes Choubani   Display of frozen...
3475
3476
3477
3478
3479
3480
3481
3482
3483
3484
3485
3486
3487
3488
3489
3490
3491
3492
3493
3494
3495
                            
                            ii = strsplit(string_name,'_',count=countx) & ii = ii(countx-1)-1 ; Locating the last underscore to automate the extraction of the plugin's keyword 
                            mm = where(tag_names(*!dustem_plugin) eq strupcase(strmid(string_name,7,ii-7))) ;,coun) ; Selecting a plugin through matching the string name of the plugin form the scope system variable with the one read from the parameter description vector
                            prmtg = (*(*!dustem_plugin).(mm).paramtag)
                            indtg = (strmid(string_name,ii+1)) & indtg = strmid(indtg,0,/reverse_offset)     
                            indtg = fix(indtg)
                            prmtg = prmtg[indtg-1] 
                            
                            yypos = 0.8 - k*0.09
                            xxpos = 0.0  
                            
                            str = string(strmid(string_name,7,ii-7)+' ['+strmid(string_name,ii+1)+']: '+prmtg+' = ',format=frmt0)
                            str=strtrim(str,2)
                            str1=str+string(res[i],format=frmt1)
                            cgtext, xxpos, yypos, str1, charsize=-1, width=thiswidth, /normal
                            xxpos=(1-thiswidth)/2 
                            ;stop
                            xyouts,xxpos,yypos,str1,color=0,/normal,charsize=1.
                            k+=1
                        
                        ENDIF    
5f04fa07   Ilyes Choubani   general update
3496
                         
53548c91   Ilyes Choubani   Display of frozen...
3497
3498
3499
3500
                    ENDFOR  
                     
                ENDIF
                
0c487640   Ilyes Choubani   corrected missing...
3501
                xxpos = 0
53548c91   Ilyes Choubani   Display of frozen...
3502
3503
3504
3505
3506
3507
3508
3509
3510
3511
3512
3513
3514
                
                prms_dscs = (*(*!dustem_fit).param_descs)
                prms_tps = strarr(n_elements(prms_dscs))
                 
                for i=0L,n_elements(prms_dscs)-1 do begin
                    prms_tps[i] = dustem_parameter_description2type(prms_dscs[i])
                endfor
                
                testprms = where(prms_tps EQ 'PLUGIN', ct_data)
                
                IF ct_data ne 0 then begin
                
                
8fbdb4c3   Ilyes Choubani   Fixed minor 0/0 e...
3515
                    if ~isa(yypos) then yypos = 0.9 else yypos-=0.1*1.2 ;not sure about this
53548c91   Ilyes Choubani   Display of frozen...
3516
3517
3518
3519
3520
                     ;stop
                     ;xxpos = 0.0;might need to be modified
                    cgtext, xxpos, yypos, '-FREE-', charsize=-1,width=thiswidth, /normal
    
                    xxpos=(1-thiswidth)/2
8fbdb4c3   Ilyes Choubani   Fixed minor 0/0 e...
3521
                    xyouts, xxpos, yypos, '-FREE-', charsize=1.2, /normal,color=0
53548c91   Ilyes Choubani   Display of frozen...
3522
3523
3524
3525
3526
3527
3528
                    
                    
                    k=0
                    res = dustem_interp
                    errors = dustem_spec
                    yypos-=0.1
                    yypostmp = yypos
5f04fa07   Ilyes Choubani   general update
3529
                        
53548c91   Ilyes Choubani   Display of frozen...
3530
3531
3532
3533
                    FOR i=0L,Npar-1 DO BEGIN  
                      ;stop
                        parameter_description = (*(*!dustem_fit).param_descs)[i]
                        parameter_type = dustem_parameter_description2type(parameter_description,string_name=string_name)
5f04fa07   Ilyes Choubani   general update
3534
                        
5f04fa07   Ilyes Choubani   general update
3535
                        
53548c91   Ilyes Choubani   Display of frozen...
3536
3537
3538
3539
3540
3541
3542
3543
3544
3545
3546
3547
3548
3549
3550
3551
3552
3553
3554
3555
3556
3557
3558
3559
3560
3561
                        IF parameter_type EQ 'PLUGIN' THEN BEGIN
                            
                            ii = strsplit(string_name,'_',count=countx) & ii = ii(countx-1)-1 ; Locating the last underscore to automate the extraction of the plugin's keyword 
                            mm = where(tag_names(*!dustem_plugin) eq strupcase(strmid(string_name,7,ii-7))) ;,coun) ; Selecting a plugin through matching the string name of the plugin form the scope system variable with the one read from the parameter description vector
                            prmtg = (*(*!dustem_plugin).(mm).paramtag)
                            indtg = (strmid(string_name,ii+1)) & indtg = strmid(indtg,0,/reverse_offset)     
                            indtg = fix(indtg)
                            prmtg = prmtg[indtg-1] 
                             
                            yypos = yypostmp - k*0.09
                            xxpos = 0.0;15 
                            
                            str = string(strmid(string_name,7,ii-7)+' ['+strmid(string_name,ii+1)+']: '+prmtg+' = ',format=frmt0)
                            str=strtrim(str,2)
                            str1 = str+string(res[i],format=frmt1)+textoidl(' \pm ')+string(errors(i),format=frmt1)           
                            ;getting the width of the total string: string title +values +errors so we can place it the right way and not have to worry about its position
                            
                            cgtext, xxpos, yypos, str1, charsize=-1, width=thiswidth, /normal
                            xxpos=(1-thiswidth)/2 
                           
                            xyouts,xxpos,yypos,str,color=0,/normal,charsize=1.
                            k+=1
                            
                        ENDIF
                          
                        
5f04fa07   Ilyes Choubani   general update
3562
                    
53548c91   Ilyes Choubani   Display of frozen...
3563
3564
                    ENDFOR
                ENDIF
5f04fa07   Ilyes Choubani   general update
3565
3566
3567
3568
            endelse
         
        
        
5f04fa07   Ilyes Choubani   general update
3569
3570
        end
        
b5314324   Ilyes Choubani   updating the plot...
3571
3572
3573
3574
3575
3576
3577
3578
3579
3580
3581
3582
3583
3584
3585
    
    endcase


endif










b5314324   Ilyes Choubani   updating the plot...
3586
END