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server/kernel/src/File/FileWriterNetCDF.cpp 12.7 KB
346b85c6   Benjamin Renard   First commit with...
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#include "FileWriterNetCDF.h"

#include <cstring>

#include "../Common/Toolbox.h"
#include "../TimeManager/TimeManager.h"

#define TREPS_NC_UNLIMITED_DIM_ID "treps_unlimited_dim"

using namespace TREPS::Common;
using namespace TREPS::TimeManager;

namespace TREPS
{
	namespace File
	{
		FileWriterNetCDFClass::FileWriterNetCDFClass(void):FileWriterAbstractClass(), ncid(0)
		{
		}

		FileWriterNetCDFClass::~FileWriterNetCDFClass(void)
		{
			this->close();
		}

		bool FileWriterNetCDFClass::init(const char *file_path, const map<string,string> *attributes)
		{
			if (!this->close())
			{
				LOG4CXX_ERROR(this->app->getLog()->getPtr(),"Cannot close previous document");
				return false;
			}

			int status = nc_create(file_path, 0, &this->ncid);

			if (status != NC_NOERR)
			{
				LOG4CXX_ERROR(this->app->getLog()->getPtr(),"Cannot create file " << file_path);
				return false;
			}

			//write attributes
			for (map<string,string>::const_iterator att = attributes->begin(); att != attributes->end(); ++att)
			{
				status = nc_put_att_text(this->ncid, NC_GLOBAL, att->first.c_str(), att->second.size(), att->second.c_str());
				if (status != NC_NOERR)
				{
					LOG4CXX_ERROR(this->app->getLog()->getPtr(),"Cannot write attrubute");
					return false;
				}
			}

			return true;
		}

		bool FileWriterNetCDFClass::writeData(const DataRecordListClass *data, t_TimeFormat timeFormat,
						const char *timePattern, const t_FieldList *fields)
		{
			if (!this->isOpened())
			{
				LOG4CXX_ERROR(this->app->getLog()->getPtr(),"Cannot write data");
				return false;
			}

			int unlimitedDimId;
			if (!this->writeUnlimitedDim(timeFormat, timePattern, unlimitedDimId))
				return false;

			if (timeFormat != TF_NONE)
			{
				t_Field timeField;
                                timeField.id   = "TREPS_TIME";
				timeField.name = timeField.id;
                                timeField.type = FT_TIME;
                                timeField.timeformat  = timeFormat;
                                timeField.timepattern = timePattern;
				timeField.dims.clear();

				if (!this->writeField(&timeField, data, unlimitedDimId))
					return false;
                        }

			//write fields
			for (t_FieldList::const_iterator field = fields->begin(); field != fields->end(); ++field)
			{
				if (!this->writeField(&(*field), data, unlimitedDimId))
                                        return false;
			}

			return true;
		}

		bool FileWriterNetCDFClass::getNetCDFVarTypeDef(const t_Field *field, const DataRecordListClass *data, nc_type &ncType, long &numElts)
		{
			//get time manager instance
			TimeManagerClass *timeMgr = TimeManagerClass::getInstance();

			numElts = 1;

			//compute nb val by record
			int nbValByRec = 1;
			for (t_DimensionList::const_iterator dim = field->dims.begin(); dim != field->dims.end(); ++dim)
				nbValByRec *= (*dim).size;

			switch (field->type)
			{
				case FT_UNKNOWN :
				{
					ncType = NC_CHAR;
					if (nbValByRec == 1)
                                                numElts = data->getMaxStringValueSize(field->id.c_str());
                                        else
                                        {
						for (int i = 0; i < nbValByRec; ++i)
						{
							string crtId = field->id;
							crtId += "_TREPSID";
							crtId += intToStr(i);
							int crtNumElts = data->getMaxStringValueSize(crtId.c_str());
							numElts = ((crtNumElts > numElts) ? crtNumElts : numElts);
						}
                                        }
					break;
				}
				case FT_TIME :
				{
					switch (field->timeformat)
					{
						case TF_NONE :
							return false;
						case TF_PATTERN :
							ncType = NC_CHAR;
							timeMgr->setCurrentPattern(field->timepattern.c_str());
							numElts = timeMgr->getCurrentPatternSize();
							break;
						case TF_TIMESTAMP :
							ncType = NC_LONG;
							break;
						case TF_DECIMAL :
						case TF_EPOCH   :
							ncType = NC_DOUBLE;
							break;
						case TF_TT2000 :
							//force to double (long long don't exist in netCDF format)
							ncType = NC_DOUBLE;
							break;
						case TF_DDTIME :
							ncType = NC_CHAR;
							numElts = 16;
							break;
						default :
							return false;
					}
					break;
				}
				case FT_FLOAT :
					ncType = NC_FLOAT;
					break;
				case FT_DOUBLE :
					ncType = NC_DOUBLE;
					break;
				case FT_SHORT :
					ncType = NC_SHORT;
					break;
				case FT_INT :
					ncType = NC_INT;
					break;
				case FT_LONG :
					ncType = NC_LONG;
					break;
				default :
					return false;
			}

			return true;
		}

		bool FileWriterNetCDFClass::writeDim(const t_Dimension *dim, int &dimid)
		{
			//check if the dim is already defined
			if (nc_inq_dimid(this->ncid, dim->id.c_str(), &dimid) != NC_NOERR)
			{
				//create dimension
				int status = nc_def_dim(this->ncid, dim->id.c_str(), dim->size, &dimid);
				if (status != NC_NOERR)
				{
					LOG4CXX_ERROR(this->app->getLog()->getPtr(),"Cannot create dimension " << dim->id);
                                        return false;
				}
			}
			
			return true;
		}

		bool FileWriterNetCDFClass::writeUnlimitedDim(t_TimeFormat timeFormat, const char *timePattern, int &unlimitedDimId)
		{
			//create unlimited dim
			t_Dimension dim;
			dim.id   = TREPS_NC_UNLIMITED_DIM_ID;
			dim.size = NC_UNLIMITED;

			if (!this->writeDim(&dim, unlimitedDimId))
			{
				LOG4CXX_ERROR(this->app->getLog()->getPtr(),"Cannot create unlimited dimension");
				return false;
			}

			return true;
		}

		bool FileWriterNetCDFClass::writeField(const t_Field *field, const DataRecordListClass *data, int unlimitedDimId)
		{
			int status;

			//enter define mode
			nc_redef(this->ncid);

			//get field info
			nc_type ncType;
			long numElts;
			if (!this->getNetCDFVarTypeDef(field, data, ncType, numElts))
			{
				LOG4CXX_ERROR(this->app->getLog()->getPtr(),"Cannot get field info");
				return false;
			}

			int nbDims = field->dims.size() + 1; //+1 for unlimited dim

			int stringDimId;
			if (numElts > 1)
			{
				t_Dimension dim;
				dim.id  = "treps_string_dim_";
				dim.id += intToStr(numElts);
				dim.size = numElts;
				if (!this->writeDim(&dim, stringDimId))
				{
					LOG4CXX_ERROR(this->app->getLog()->getPtr(),"Error to create string dim");
					return false;
				}
				++nbDims; //+1 for string dim
			}

			int dimids[nbDims];
			int index = 0;

			//inlimited dim
			dimids[index] = unlimitedDimId;
			++index;

			//create other dims
			for (t_DimensionList::const_iterator dim = field->dims.begin(); dim != field->dims.end(); ++dim)
			{
				if (!this->writeDim(&(*dim), dimids[index]))
				{
					LOG4CXX_ERROR(this->app->getLog()->getPtr(),"Cannot create dim");
					return false;
				}
				++index;
			}

			//string dim
			if (numElts > 1)
			{
				dimids[index] = stringDimId;
				++index;
			}

			//create var
			int varid;
			status = nc_def_var(this->ncid, field->id.c_str(), ncType, nbDims, dimids, &varid);
			if (status != NC_NOERR)
			{
				LOG4CXX_ERROR(this->app->getLog()->getPtr(),"Cannot create variable " << field->name);
				return false;
			}

			//write var data
			if (!this->writeFieldData(field, data, ncType, numElts, varid))
				return false;

			//write attributes
			nc_redef(this->ncid);
			for (map<string,string>::const_iterator att = field->attributes.begin(); att != field->attributes.end(); ++att)
			{
150096dc   Benjamin Renard   Fix some bugs + i...
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				if (att->second.empty())
					continue;
346b85c6   Benjamin Renard   First commit with...
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				status = nc_put_att_text(this->ncid, varid, att->first.c_str(), att->second.size(), att->second.c_str());
				if (status != NC_NOERR)
				{
					LOG4CXX_ERROR(this->app->getLog()->getPtr(),"Cannot write attribute " << nc_strerror(status));
					return false;
				}
			}
			
			return true;
		}

		bool FileWriterNetCDFClass::writeFieldData(const t_Field *field, const DataRecordListClass *data, nc_type ncType,
								long numElts, int varId)
		{
			nc_enddef(this->ncid);
			DataRecordClass *crtRecord = data->getFirstRecord();

			int nbValByRec = 1;
			for (t_DimensionList::const_iterator dim = field->dims.begin(); dim != field->dims.end(); ++dim)
				nbValByRec *= (*dim).size;

			int nbDims = field->dims.size() + 1;
			if (numElts > 1)
				++nbDims;

			size_t start[nbDims];
			size_t count[nbDims];

			int index = 0;
			//unlimited dim
			start[index] = 0;
			count[index] = 1;
			++index;

			//others dims
			for (t_DimensionList::const_iterator dim = field->dims.begin(); dim != field->dims.end(); ++dim)
			{
				start[index] = 0;
				count[index] = (*dim).size;
				++index;
			}

			//string dim
			if (numElts > 1)
			{
				start[index] = 0;
				count[index] = numElts;
				++index;
			}

			//get one value size
			int valSize;
			switch (ncType)
			{
				case NC_INT :
					valSize = sizeof(int);
					break;
				case NC_FLOAT :
					valSize = sizeof(float);
					break;
				case NC_DOUBLE :
					valSize = sizeof(double);
					break;
				case NC_SHORT :
					valSize = sizeof(short);
					break;
				case NC_CHAR :
					valSize = sizeof(char);
					break;
				default :
					LOG4CXX_ERROR(this->app->getLog()->getPtr(),"Cannot get value size");
					return false;
			}

			//create buffer
			void *buffer = malloc(numElts * valSize * nbValByRec);

			while (crtRecord != NULL)
			{
				memset(buffer,0,numElts * valSize * nbValByRec);
				if (field->dims.empty())
				{
					if (!this->convertData(field, crtRecord, field->id.c_str(), ncType, numElts, buffer))
					{
						free(buffer);
						LOG4CXX_ERROR(this->app->getLog()->getPtr(),"Error to convert data");
						return false;
					}
				}
				else
				{
					void *p = buffer;
					for (int i = 0; i < nbValByRec; ++i)
					{
						string key = field->id;
						key += "_TREPSID";
						key += intToStr(i);
						if (!this->convertData(field, crtRecord, key.c_str(), ncType, numElts, p))
							return false;
						p = (void*)((long)p + (long)(numElts*valSize));
					}
				}
				int status = nc_put_vara (this->ncid, varId, start, count, buffer);
				if (status != NC_NOERR)
				{
					free(buffer);
					LOG4CXX_ERROR(this->app->getLog()->getPtr(),"Error to put data");
                                        return false;
                                }

				crtRecord = crtRecord->getNextRecord();
				++start[0];
			}

			free(buffer);

			return true;
		}

		bool FileWriterNetCDFClass::convertData(const t_Field *field, DataRecordClass *record, const char *key,
								nc_type ncType, long numElts, void *buffer)
		{
			//get time manager instance
			TimeManagerClass *timeMgr = TimeManagerClass::getInstance();

			switch (ncType)
			{
				case NC_INT :
				{
					int i;
					if (field->type != FT_TIME)
						i = record->getIntValue(key);
					else
					{
						t_Time time = record->getTime();
                                                switch (field->timeformat)
                                                {
                                                        case TF_TIMESTAMP :
                                                                i = timeMgr->to_TIMESTAMP(time);
                                                                break;
							default :
								//error
								i = 0;
						}
					}
					memcpy(buffer,&i,sizeof(int));
					break;
				}
				case NC_FLOAT :
				{
					float f;
					if (field->type != FT_TIME)
						f = record->getFloatValue(key);
					else
					{
						//error
						f = 0;
					}
					memcpy(buffer,&f,sizeof(float));
					break;
				}
				case NC_DOUBLE :
				{
					double d;
					if (field->type != FT_TIME)
						d = record->getDoubleValue(key);
					else
					{
						t_Time time = record->getTime();
						switch (field->timeformat)
						{
							case TF_DECIMAL :
								d = timeMgr->to_DECIMAL(time);
								break;
							case TF_EPOCH :
								d = timeMgr->to_EPOCH(time);
								break;
							case TF_TT2000 :
								d = timeMgr->to_TT2000(time);
								break;
							default :
							//error
							d = 0;
						}
					}
					memcpy(buffer,&d,sizeof(double));
					break;
				}
				case NC_SHORT :
				{
					short int s;
					if (field->type != FT_TIME)
						s = record->getShortValue(key);
					else
						//error
						s = 0;
					memcpy(buffer,&s,sizeof(short int));
					break;
				}
				case NC_CHAR :
				{
					string val;
					if (field->type != FT_TIME)
						val = record->getValue(key);
					else
					{
						t_Time time = record->getTime();
						val = timeMgr->to_string(time, field->timeformat, field->timepattern.c_str());
						
					}
					if (val.size() > 0)
						memcpy(buffer,val.c_str(),val.size()*sizeof(char));
					//((char *)buffer)[val.size()] = '\0';
					break;
				}
				default :
					return false;
			}

			return true;
		}

		bool FileWriterNetCDFClass::save(void)
		{
			return (this->close());
		}

		bool FileWriterNetCDFClass::close(void)
		{
			if (this->isOpened())
			{
				int res = nc_close(this->ncid);
				if (res == NC_NOERR)
					this->ncid = 0;
				return (res == NC_NOERR);
			}
			return !this->isOpened();
		}

 		bool FileWriterNetCDFClass::isOpened(void)
		{
			return (this->ncid > 0);
		}
	}
}