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web/run.py 59.3 KB
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# coding=utf-8

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import StringIO
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import datetime
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import gzip
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import json
import logging
import random
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import tarfile
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import time
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import urllib
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import requests
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import re  # regex
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import numpy
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from csv import writer as csv_writer, DictWriter as csv_dict_writer
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from math import sqrt, isnan
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from os import environ, remove as removefile
from os.path import isfile, join, abspath, dirname

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# (i) Just ignore the requirements warning, we already require `dateutils`.
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from dateutil.relativedelta import relativedelta
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from dateutil import parser as dateparser

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from flask import Flask
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from flask import request
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from flask import url_for, send_from_directory, abort as abort_flask
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from jinja2 import Environment, FileSystemLoader, Markup
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from yaml import load as yaml_load
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from netCDF4 import Dataset, date2num
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# PATH RELATIVITY #############################################################

THIS_DIRECTORY = dirname(abspath(__file__))


def get_path(relative_path):
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    """Get an absolute path from the relative path to this script directory."""
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    return abspath(join(THIS_DIRECTORY, relative_path))


# COLLECT GLOBAL INFORMATION FROM SOURCES #####################################

# VERSION
with open(get_path('../VERSION'), 'r') as version_file:
    version = version_file.read().strip()

# CONFIG
with open(get_path('../config.yml'), 'r') as config_file:
    config = yaml_load(config_file.read())

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FILE_DATE_FMT = "%Y-%m-%dT%H:%M:%S"
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MOMENT_DATE_FMT = "%Y-%m-%dT%H:%M:%SZ"
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CME_DATE_FMT = "%Y-%m-%dT%H:%MZ"
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# Are we on the SSA instance for ESA?
SSA = environ.get('SSA') == 'true'
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DEBUG = environ.get('DEBUG') == 'true'
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# SSA = True
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# LOGGING #####################################################################

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LOG_FILE = get_path('run.log')

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log = logging.getLogger("HelioPropa")
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if DEBUG:
    log.setLevel(logging.DEBUG)
else:
    log.setLevel(logging.ERROR)
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logHandler = logging.FileHandler(LOG_FILE)
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logHandler.setFormatter(logging.Formatter(
    "%(asctime)s - %(levelname)s - %(message)s"
))
log.addHandler(logHandler)
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# HARDCODED CONFIGURATION #####################################################

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ASTRONOMICAL_UNIT_IN_KM = 1.496e8

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# Absolute path to the installed CDF library from https://cdf.gsfc.nasa.gov/
CDF_LIB = '/usr/local/lib/libcdf'

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# Absolute path to the data cache directory
CACHE_DIR = get_path('../cache')

# These two configs are not in the YAML config because adding a new parameter
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# will not work as-is, you'd have to edit some netcdf-related code.
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# The slugs of the available parameters in the generated CSV files.
# The order matters. If you change this you also need to change the
# innermost loop of `get_data_for_target`.
# The javascript knows the targets' properties under these names.
PROPERTIES = ('time', 'vrad', 'vtan', 'vtot', 'btan', 'temp', 'pdyn', 'dens',
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              'atse', 'xhee', 'yhee')
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# The parameters that the users can handle.
# The slug MUST be one of the properties above.
PARAMETERS = {
    'pdyn': {
        'slug': 'pdyn',
        'name': 'Dyn. Pressure',
        'title': 'The dynamic pressure.',
        'units': 'nPa',
        'active': True,
        'position': 10,
    },
    'vtot': {
        'slug': 'vtot',
        'name': 'Velocity',
        'title': 'The velocity of the particles.',
        'units': 'km/s',
        'active': False,
        'position': 20,
    },
    'btan': {
        'slug': 'btan',
        'name': 'B Tangential',
        'title': 'B Tangential.',
        'units': 'nT',
        'active': False,
        'position': 30,
    },
    'temp': {
        'slug': 'temp',
        'name': 'Temperature',
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        'title': 'The temperature.',
        'units': 'eV',
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        'active': False,
        'position': 40,
    },
    'dens': {
        'slug': 'dens',
        'name': 'Density',
        'title': 'The density N.',
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        'units': 'cm^-3',
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        'active': False,
        'position': 50,
    },
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    'atse': {
        'slug': 'atse',
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        'name': 'Angle T-S-E',
        'title': 'Angle Target-Sun-Earth.',
        'units': 'deg',
        'active': False,
        'position': 60,
    },
}


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# SETUP ENVIRONMENT ###########################################################
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environ['SPACEPY'] = CACHE_DIR
environ['CDF_LIB'] = CDF_LIB


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# SETUP FLASK ENGINE ##########################################################

app = Flask(__name__, root_path=THIS_DIRECTORY)
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app.debug = DEBUG
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if app.debug:
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    log.info("Starting Flask app IN DEBUG MODE...")
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else:
    log.info("Starting Flask app...")
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def handle_error(e):
    log.error(e)
    return str(e)  # wish we could use the default error renderer here

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app.register_error_handler(Exception, handle_error)


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# SETUP JINJA2 TEMPLATE ENGINE ################################################

def static_global(filename):
    return url_for('static', filename=filename)


def shuffle_filter(seq):
    """
    This shuffles the sequence it is applied to.
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    Jinja2 _should_ provide this.
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    """
    try:
        result = list(seq)
        random.shuffle(result)
        return result
    except:
        return seq


def markdown_filter(value, nl2br=False, p=True):
    """
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    Converts markdown into html.
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    nl2br: set to True to replace line breaks with <br> tags
    p: set to False to remove the enclosing <p></p> tags
    """
    from markdown import markdown
    from markdown.extensions.nl2br import Nl2BrExtension
    from markdown.extensions.abbr import AbbrExtension
    extensions = [AbbrExtension()]
    if nl2br is True:
        extensions.append(Nl2BrExtension())
    markdowned = markdown(value, output_format='html5', extensions=extensions)
    if p is False:
        markdowned = markdowned.replace(r"<p>", "").replace(r"</p>", "")
    return markdowned


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_js_escapes = {
        '\\': '\\u005C',
        '\'': '\\u0027',
        '"': '\\u0022',
        '>': '\\u003E',
        '<': '\\u003C',
        '&': '\\u0026',
        '=': '\\u003D',
        '-': '\\u002D',
        ';': '\\u003B',
        u'\u2028': '\\u2028',
        u'\u2029': '\\u2029'
}
# Escape every ASCII character with a value less than 32.
_js_escapes.update(('%c' % z, '\\u%04X' % z) for z in xrange(32))


def escapejs_filter(value):
    escaped = []
    for letter in value:
        if letter in _js_escapes:
            escaped.append(_js_escapes[letter])
        else:
            escaped.append(letter)

    return Markup("".join(escaped))

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tpl_engine = Environment(loader=FileSystemLoader([get_path('view')]),
                         trim_blocks=True,
                         lstrip_blocks=True)

tpl_engine.globals.update(
    url_for=url_for,
    static=static_global,
)

tpl_engine.filters['markdown'] = markdown_filter
tpl_engine.filters['md'] = markdown_filter
tpl_engine.filters['shuffle'] = shuffle_filter
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tpl_engine.filters['escapejs'] = escapejs_filter
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tpl_global_vars = {
    'request': request,
    'version': version,
    'config': config,
    'now': datetime.datetime.now(),
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    'is_esa': SSA,
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}


# HELPERS #####################################################################

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def abort(code, message):
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    log.error("Abort: " + message)
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    abort_flask(code, message)


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def render_view(view, context=None):
    """
    A simple helper to render [view] template with [context] vars.
    It automatically adds the global template vars defined above, too.
    It returns a string, usually the HTML contents to display.
    """
    context = {} if context is None else context
    return tpl_engine.get_template(view).render(
        dict(tpl_global_vars.items() + context.items())
    )


# def render_page(page, title="My Page", context=None):
#     """
#     A simple helper to render the md_page.html template with [context] vars &
#     the additional contents of `page/[page].md` in the `md_page` variable.
#     It automagically adds the global template vars defined above, too.
#     It returns a string, usually the HTML contents to display.
#     """
#     if context is None:
#         context = {}
#     context['title'] = title
#     context['md_page'] = ''
#     with file(get_path('page/%s.md' % page)) as f:
#         context['md_page'] = f.read()
#     return tpl_engine.get_template('md_page.html').render(
#         dict(tpl_global_vars.items() + context.items())
#     )

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def is_list_in_list(needle, haystack):
    for n in needle:
        if n not in haystack:
            return False
    return True


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def round_time(dt=None, round_to=60):
    """
    Round a datetime object to any time laps in seconds
    dt : datetime.datetime object, default now.
    roundTo : Closest number of seconds to round to, default 1 minute.
    """
    if dt is None:
        dt = datetime.datetime.now()
    seconds = (dt.replace(tzinfo=None) - dt.min).seconds
    rounding = (seconds + round_to / 2) // round_to * round_to
    return dt + datetime.timedelta(0, rounding-seconds, -dt.microsecond)


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def datetime_from_list(time_list):
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    """
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    Datetimes in retrieved CDFs are stored as lists of numbers,
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    with DayOfYear starting at 0. We want it starting at 1 because it's what
    vendor parsers use, both in python and javascript.
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    """
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    # Day Of Year starts at 0, but for our datetime parser it starts at 1
    doy = '{:03d}'.format(int(''.join(time_list[4:7])) + 1)
    return datetime.datetime.strptime(
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        "%s%s%s" % (''.join(time_list[0:4]), doy, ''.join(time_list[7:-1])),
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        "%Y%j%H%M%S%f"
    )
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def get_local_filename(url):
    """
    Build the local cache filename for the distant file
    :param url: string
    :return: string
    """
    from slugify import slugify
    n = len('http://')
    if url.startswith('https'):
        n += 1
    s = url[n:]
    return slugify(s)


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def get_target_config(slug):
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    for s in config['targets']:  # dumb
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        if s['slug'] == slug:
            return s
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    raise Exception("No target found in configuration for '%s'." % slug)
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def check_target_config(slug):
    get_target_config(slug)


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def get_active_targets():
    all_targets = config['targets']
    return [t for t in all_targets if not ('locked' in t and t['locked'])]


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def validate_tap_target_config(target):
    tc = get_target_config(target)
    if 'tap' not in tc:
        raise Exception("No `tap` configuration for target `%s`." % target)
    if 'target_name' not in tc['tap']:
        raise Exception("No `target_name` in the `tap` configuration for target `%s`." % target)
    return tc


# Using pyvo would be best.
# def retrieve_auroral_emissions_vopy(target_name):
#     api_url = "http://voparis-tap.obspm.fr/__system__/tap/run/tap/sync"
#     import pyvo as vo
#     service = vo.dal.TAPService(api_url)
#     # … can't figure out how to install pyvo and spacepy alongside (forking?)


def retrieve_auroral_emissions(target_name, d_started_at=None, d_stopped_at=None):
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    """
    Work In Progress.
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    :param target_name: You should probably not let users define this value,
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                        as our sanitizing for ADQL may not be 100% safe.
                        Use values from YAML configuration, instead.
                        Below is a list of the ids we found to be existing.
                        > SELECT DISTINCT target_name FROM apis.epn_core
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                        - Jupiter
                        - Saturn
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                        - Mars
                        - MERCURY
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                        - Titan
                        - Io
                        - VENUS
                        - Ganymede
                        - Uranus
                        - Callisto
                        - Europa
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                        https://pdssbn.astro.umd.edu/holdings/nh-p-rex-2-pluto-v1.0/document/codmac_level_definitions.pdf
                        processing_level == 3
                        
                        API doc and sandbox:
                        http://voparis-tap-planeto.obspm.fr/__system__/tap/run/info
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    :return: 
    """
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    # Try out the form
    # http://voparis-tap-planeto.obspm.fr/__system__/adql/query/form

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    api_url = "http://voparis-tap.obspm.fr/__system__/tap/run/tap/sync"
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    if d_started_at is None:
        d_started_at = datetime.datetime.now()
        t_started_at = time.mktime(d_started_at.timetuple()) - 3600 * 24 * 365 * 2
        # t_started_at = 1
    else:
        t_started_at = time.mktime(d_started_at.timetuple())

    if d_stopped_at is None:
        d_stopped_at = datetime.datetime.now()
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    t_stopped_at = time.mktime(d_stopped_at.timetuple())

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    def timestamp_to_jday(timestamp):
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        return timestamp / 86400.0 + 2440587.5

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    def jday_to_timestamp(jday):
        return (jday - 2440587.5) * 86400.0

    def jday_to_datetime(jday):
        return datetime.datetime.utcfromtimestamp(jday_to_timestamp(jday))

    # SELECT DISTINCT dataproduct_type FROM apis.epn_core
    # > im sp sc

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    query = """
SELECT
  time_min,
  time_max,
  thumbnail_url,
  external_link
FROM apis.epn_core
WHERE target_name='{target_name}'
AND   dataproduct_type='im'
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AND   time_min >= {jday_start}
AND   time_min <= {jday_stop}
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ORDER BY time_min, granule_gid
""".format(
        target_name=target_name.replace("'", "\\'"),
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        jday_start=timestamp_to_jday(t_started_at),
        jday_stop=timestamp_to_jday(t_stopped_at)
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    )
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# AND   processing_level = 4
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#     query = """
# SELECT DISTINCT target_name FROM apis.epn_core
# """

    try:
        response = requests.post(api_url, {
            'REQUEST': 'doQuery',
            'LANG':    'ADQL',
            'QUERY':   query,
            'TIMEOUT': '30',
            'FORMAT':  'VOTable/td'
        })

        response_xml = response.text

        import xml.etree.ElementTree as ET
        root = ET.fromstring(response_xml)
        namespaces = {'vo': 'http://www.ivoa.net/xml/VOTable/v1.3'}
        rows_xpath = "./vo:RESOURCE/vo:TABLE/vo:DATA/vo:TABLEDATA/vo:TR"
        rows = []
        for row in root.findall(rows_xpath, namespaces):
            rows.append({
11d86851   Goutte   Add support for s...
477
478
                'time_min': jday_to_datetime(float(row[0].text)),
                'time_max': jday_to_datetime(float(row[1].text)),
9f57dceb   Goutte   Add half the brid...
479
480
481
482
                'thumbnail_url': row[2].text,
                'external_link': row[3].text,
            })

81960a4f   Goutte   Fix an issue repo...
483
484
485
        # print("Auroral emission query")
        # print(query)
        # print("Auroral emission rows")
9f57dceb   Goutte   Add half the brid...
486
        # print(rows)
81960a4f   Goutte   Fix an issue repo...
487

9f57dceb   Goutte   Add half the brid...
488
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491
492
493
494
495
        return rows
    except Exception as e:
        print("Failed to retrieve auroral emissions :")
        print(e)

    # print(query)


180d7d97   Goutte   Refactor heavily.
496
def retrieve_amda_netcdf(orbiter, what, started_at, stopped_at):
8644387c   Goutte   Use real data.
497
    """
91c3d52d   Goutte   Add more logs.
498
499
    Handles remote querying AMDA's API for URLs, and then downloading,
    extracting and caching the netCDF files.
8644387c   Goutte   Use real data.
500
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    :param orbiter: key of the source in the YAML config
    :param what: either 'model' or 'orbit', a key in the config of the source
    :param started_at:
    :param stopped_at:
    :return: a list of local file paths to netCDF (.nc) files
    """

    url = config['amda'].format(
        dataSet=what,
        startTime=started_at.isoformat(),
        stopTime=stopped_at.isoformat()
    )
c50cc9d8   Goutte   Continue fixing.
512
    log.info("Fetching remote gzip files list at '%s'." % url)
b2837a08   Goutte   Add three retries...
513
514
    retries = 0
    success = False
92abc15b   Goutte   Mistrust the API ...
515
    errors = []
b2837a08   Goutte   Add three retries...
516
517
518
519
520
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522
523
    remote_gzip_files = []
    while not success and retries < 3:
        try:
            response = urllib.urlopen(url)
            remote_gzip_files = json.loads(response.read())
            if not remote_gzip_files:
                raise Exception("Failed to fetch data at '%s'." % url)
            if remote_gzip_files == 'NODATASET':
92abc15b   Goutte   Mistrust the API ...
524
525
526
                raise Exception("API says there's no dataset at '%s'." % url)
            if remote_gzip_files == 'ERROR':
                raise Exception("API returned an error at '%s'." % url)
077980eb   Goutte   Improve availabil...
527
            if remote_gzip_files == ['OUTOFTIME']:  # it happens
80352490   Goutte   Multi model suppo...
528
529
                return []
                # raise Exception("API says it's out of time at '%s'." % url)
b2837a08   Goutte   Add three retries...
530
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532
            success = True
        except Exception as e:
            log.warn("Failed (%d/3) '%s' : %s" % (retries+1, url, e.message))
92abc15b   Goutte   Mistrust the API ...
533
534
            remote_gzip_files = []
            errors.append(e)
b2837a08   Goutte   Add three retries...
535
536
537
        finally:
            retries += 1
    if not remote_gzip_files:
b52b494b   Goutte   Add even more logs.
538
        log.error("Failed to retrieve data from AMDA.")
91c3d52d   Goutte   Add more logs.
539
540
        log.error("Failed to fetch gzip files list for %s at '%s' : %s" %
                   (orbiter, url, errors))
08abc2d4   Goutte   Remove duplicate ...
541
542
543
544
        abort(400, "Failed to fetch gzip files list for %s at '%s' : %s" %
                   (orbiter, url, errors))
    else:
        remote_gzip_files = list(set(remote_gzip_files))
9bfa6c42   Goutte   More bug hunting.
545
546

    log.debug("Fetched remote gzip files list : %s." % str(remote_gzip_files))
8644387c   Goutte   Use real data.
547

8644387c   Goutte   Use real data.
548
549
    local_gzip_files = []
    for remote_gzip_file in remote_gzip_files:
077980eb   Goutte   Improve availabil...
550
551
552
        # hotfixes to remove when fixed upstream @Myriam
        if remote_gzip_file in ['OUTOFTIME', 'ERROR']:
            continue  # sometimes half the response is okay, the other not
8644387c   Goutte   Use real data.
553
        if remote_gzip_file.endswith('/.gz'):
80352490   Goutte   Multi model suppo...
554
            continue  # this is just a plain bug
8644387c   Goutte   Use real data.
555
        remote_gzip_file = remote_gzip_file.replace('cdpp1', 'cdpp', 1)
077980eb   Goutte   Improve availabil...
556
        ################################################
e18701b6   Goutte   Cache clear (remo...
557
        local_gzip_file = join(CACHE_DIR, get_local_filename(remote_gzip_file))
8644387c   Goutte   Use real data.
558
559
        local_gzip_files.append(local_gzip_file)
        if not isfile(local_gzip_file):
9bfa6c42   Goutte   More bug hunting.
560
            log.debug("Retrieving '%s'..." % local_gzip_file)
8644387c   Goutte   Use real data.
561
            urllib.urlretrieve(remote_gzip_file, local_gzip_file)
9bfa6c42   Goutte   More bug hunting.
562
            log.debug("Retrieved '%s'." % local_gzip_file)
dc0be992   Goutte   Support having no...
563
564
        else:
            log.debug("Found '%s' in the cache." % local_gzip_file)
8644387c   Goutte   Use real data.
565
566
567
568

    local_netc_files = []
    for local_gzip_file in local_gzip_files:
        local_netc_file = local_gzip_file[0:-3]
9bfa6c42   Goutte   More bug hunting.
569
        log.debug("Unzipping '%s'..." % local_gzip_file)
3c064b17   Goutte   Ignore failures w...
570
571
        success = True
        try:
5ef50583   Goutte   Clean up.
572
            with gzip.open(local_gzip_file) as f:
3c064b17   Goutte   Ignore failures w...
573
574
575
576
577
                file_content = f.read()
                with open(local_netc_file, 'w+b') as g:
                    g.write(file_content)
        except Exception as e:
            success = False
dc0be992   Goutte   Support having no...
578
579
580
581
582
            log.error("Cannot process gz file '%s' from '%s' : %s" %
                      (local_gzip_file, url, e))
            # Sometimes, the downloaded gz is corrupted, and CRC checks fail.
            # We want to delete the local gz file and try again next time.
            removefile(local_gzip_file)
3c064b17   Goutte   Ignore failures w...
583
        if success:
dc0be992   Goutte   Support having no...
584
            local_netc_files.append(local_netc_file)
3c064b17   Goutte   Ignore failures w...
585
            log.debug("Unzipped '%s'." % local_gzip_file)
8644387c   Goutte   Use real data.
586

ea6c8d5d   Goutte   Add interval cons...
587
    return list(set(local_netc_files))  # remove possible dupes
8644387c   Goutte   Use real data.
588
589


596da00d   Goutte   Add more exceptio...
590
591
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634
# class DataParser:
#     """
#     Default data parser
#     A wip to try to handle code exeptions sanely.
#     """
#
#     # Override these using the model configuration
#     default_nc_keys = {
#         'hee': 'HEE',
#         'vtot': 'V',
#         'magn': 'B',
#         'temp': 'T',
#         'dens': 'N',
#         'pdyn': 'P_dyn',
#         'atse': 'Delta_angle',
#     }
#
#     def __init__(self, target, model):
#         self.target = target
#         self.model = model
#         pass
#
#     def _read_var(self, nc, _keys, _key, mandatory=False):
#         try:
#             return nc.variables[_keys[_key]]
#         except KeyError:
#             pass
#         if mandatory:
#             raise Exception("No variable '%s' found in NetCDF." % _keys[_key])
#         return [None] * len(nc.variables['Time'])  # slow -- use numpy?
#
#     def parse(self, cdf_handle):
#         nc_keys = self.default_nc_keys.copy()
#
#         times = cdf_handle.variables['Time']  # YYYY DOY HH MM SS .ms
#         data_v = self._read_var(cdf_handle, nc_keys, 'vtot')
#         data_b = self._read_var(cdf_handle, nc_keys, 'magn')
#         data_t = self._read_var(cdf_handle, nc_keys, 'temp')
#         data_n = self._read_var(cdf_handle, nc_keys, 'dens')
#         data_p = self._read_var(cdf_handle, nc_keys, 'pdyn')
#         data_a = self._read_var(cdf_handle, nc_keys, 'atse')
#
#         return zip()


de97d643   Goutte   Fix more bugs.
635
636
def get_data_for_target(target_config, input_slug,
                        started_at, stopped_at):
180d7d97   Goutte   Refactor heavily.
637
638
639
640
    """
    :return: dict whose keys are datetime as str, values tuples of data
    """
    log.debug("Grabbing data for '%s'..." % target_config['slug'])
80352490   Goutte   Multi model suppo...
641

8644387c   Goutte   Use real data.
642
    try:
297a7dfc   Goutte   Add support for i...
643
        models = target_config['models'][input_slug]
077980eb   Goutte   Improve availabil...
644
645
    except Exception as e:
        abort(500, "Invalid model configuration for '%s' : %s"
180d7d97   Goutte   Refactor heavily.
646
647
              % (target_config['slug'], str(e)))
    try:
80352490   Goutte   Multi model suppo...
648
        orbits = target_config['orbit']['models']
d1c44c51   Goutte   Enable Earth
649
650
651
652
    except KeyError as e:
        orbits = []
        # abort(500, "Invalid orbit configuration for '%s' : %s"
        #       % (target_config['slug'], str(e)))
28ef3790   Goutte   Clean up.
653

58bfe281   Goutte   Handle start and ...
654
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664
    def _sta_sto(_cnf, _sta, _sto):
        if 'started_at' in _cnf:
            _s0 = datetime.datetime.strptime(_cnf['started_at'], FILE_DATE_FMT)
            _s0 = max(_s0, _sta)
        else:
            _s0 = _sta
        if 'stopped_at' in _cnf:
            _s1 = datetime.datetime.strptime(_cnf['stopped_at'], FILE_DATE_FMT)
            _s1 = min(_s1, _sto)
        else:
            _s1 = _sto
aa7247d6   Goutte   Generate a CDF fi...
665
        return _s0, _s1
80352490   Goutte   Multi model suppo...
666

d1c44c51   Goutte   Enable Earth
667
668
669
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672
673
674
675
    def _read_var(_nc, _keys, _key, mandatory=False):
        try:
            return _nc.variables[_keys[_key]]
        except KeyError:
            pass
        if mandatory:
            raise Exception("No variable '%s' found in NetCDF." % _keys[_key])
        return [None] * len(_nc.variables['Time'])  # slow -- use numpy!

fd1829c3   Goutte   Use the new AMDA API
676
    # Override these using the model configuration in config.yml
d1c44c51   Goutte   Enable Earth
677
678
679
680
681
682
683
684
685
686
    default_nc_keys = {
        'hee': 'HEE',
        'vtot': 'V',
        'magn': 'B',
        'temp': 'T',
        'dens': 'N',
        'pdyn': 'P_dyn',
        'atse': 'Delta_angle',
    }

80352490   Goutte   Multi model suppo...
687
    precision = "%Y-%m-%dT%H"  # model and orbits times are only equal-ish
180d7d97   Goutte   Refactor heavily.
688
    orbit_data = {}  # keys are datetime as str, values arrays of XY
ea6c8d5d   Goutte   Add interval cons...
689
690

    for orbit in orbits:
58bfe281   Goutte   Handle start and ...
691
        s0, s1 = _sta_sto(orbit, started_at, stopped_at)
ea6c8d5d   Goutte   Add interval cons...
692

d1c44c51   Goutte   Enable Earth
693
694
695
696
        nc_keys = default_nc_keys.copy()
        if 'parameters' in orbit:
            nc_keys.update(orbit['parameters'])

ea6c8d5d   Goutte   Add interval cons...
697
698
699
700
701
702
703
704
        orbit_files = retrieve_amda_netcdf(
            target_config['slug'], orbit['slug'], s0, s1
        )
        for orbit_file in orbit_files:
            log.debug("%s: opening orbit NETCDF4 '%s'..." %
                      (target_config['name'], orbit_file))
            cdf_handle = Dataset(orbit_file, "r", format="NETCDF4")
            times = cdf_handle.variables['Time']  # YYYY DOY HH MM SS .ms
d1c44c51   Goutte   Enable Earth
705
            data_hee = _read_var(cdf_handle, nc_keys, 'hee', mandatory=True)
ea6c8d5d   Goutte   Add interval cons...
706
707
708

            log.debug("%s: aggregating data from '%s'..." %
                      (target_config['name'], orbit_file))
d1c44c51   Goutte   Enable Earth
709
            for ltime, datum_hee in zip(times, data_hee):
1324cc91   Goutte   Make the footer i...
710
                try:
d1c44c51   Goutte   Enable Earth
711
712
713
714
                    dtime = datetime_from_list(ltime)
                except Exception:
                    log.error("Failed to parse time from %s." % ltime)
                    raise
81cb3ba6   Goutte   Fix an issue with...
715
                # Keep only what's in the interval
ea6c8d5d   Goutte   Add interval cons...
716
                if s0 <= dtime <= s1:
1324cc91   Goutte   Make the footer i...
717
                    dkey = round_time(dtime, 60*60).strftime(precision)
ea6c8d5d   Goutte   Add interval cons...
718
719
                    orbit_data[dkey] = datum_hee
            cdf_handle.close()
180d7d97   Goutte   Refactor heavily.
720

8644387c   Goutte   Use real data.
721
    all_data = {}  # keys are datetime as str, values tuples of data
81cb3ba6   Goutte   Fix an issue with...
722

58bfe281   Goutte   Handle start and ...
723
724
725
726
727
    for model in models:
        s0, s1 = _sta_sto(model, started_at, stopped_at)
        model_files = retrieve_amda_netcdf(
            target_config['slug'], model['slug'], s0, s1
        )
d1c44c51   Goutte   Enable Earth
728
729
730
731
        nc_keys = default_nc_keys.copy()
        if 'parameters' in model:
            nc_keys.update(model['parameters'])

129181a6   Goutte   Add more logs to ...
732
733
734
735
        if len(model_files) == 0:
            log.warn("No model data for '%s' '%s'."
                     % (target_config['slug'], model['slug']))

58bfe281   Goutte   Handle start and ...
736
        for model_file in model_files:
58bfe281   Goutte   Handle start and ...
737
738
739
            log.debug("%s: opening model NETCDF4 '%s'..." %
                      (target_config['name'], model_file))
            cdf_handle = Dataset(model_file, "r", format="NETCDF4")
596da00d   Goutte   Add more exceptio...
740

d1c44c51   Goutte   Enable Earth
741
            # log.debug(cdf_handle.variables.keys())
596da00d   Goutte   Add more exceptio...
742

58bfe281   Goutte   Handle start and ...
743
            times = cdf_handle.variables['Time']  # YYYY DOY HH MM SS .ms
d1c44c51   Goutte   Enable Earth
744
745
746
747
748
749
750
            data_v = _read_var(cdf_handle, nc_keys, 'vtot')
            data_b = _read_var(cdf_handle, nc_keys, 'magn')
            data_t = _read_var(cdf_handle, nc_keys, 'temp')
            data_n = _read_var(cdf_handle, nc_keys, 'dens')
            data_p = _read_var(cdf_handle, nc_keys, 'pdyn')
            data_a = _read_var(cdf_handle, nc_keys, 'atse')

45700883   Myriam Bouchemit   temperature for e...
751

d1c44c51   Goutte   Enable Earth
752
753
754
755
756
757
758
759
760
            # Usually:
            # Time, StartTime, StopTime, V, B, N, T, Delta_angle, P_dyn
            # Earth:
            # Time, BartelsNumber, ImfID, SwID, ImfPoints,
            # SwPoints, B_M_av, B_Vec_av, B_Theta_av,
            # B_Phi_av, B, T, N, V, Vlat, Vlon,
            # Alpha, RamP, E, Beta, Ma, Kp, R, DST,
            # AE, Flux, Flag, F10_Index, StartTime, StopTime

81cb3ba6   Goutte   Fix an issue with...
761
762
763
764
765
766
            # Don't ignore, but instead, compute a mean ?
            # Look for discretisation ? temporal drizzling ? 1D drizzling ?
            # The easy linear mean feels a bit rough too. Running mean too.
            # FIXME
            ignored_count = 0

58bfe281   Goutte   Handle start and ...
767
768
            log.debug("%s: aggregating data from '%s'..." %
                      (target_config['name'], model_file))
d1c44c51   Goutte   Enable Earth
769
770
771
            for ltime, datum_v, datum_b, datum_t, datum_n, datum_p, datum_a \
                    in zip(times, data_v, data_b, data_t, data_n, data_p, data_a):

58bfe281   Goutte   Handle start and ...
772
                try:
d1c44c51   Goutte   Enable Earth
773
774
775
776
                    dtime = datetime_from_list(ltime)
                except Exception:
                    log.error("Failed to parse time from %s." % ltime)
                    raise
596da00d   Goutte   Add more exceptio...
777

81cb3ba6   Goutte   Fix an issue with...
778
779
780
781
782
783
784
785
786
787
788
789
790
791
792
793
794
795
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799
800
801
802
803
804
805
806
807
808
809
810
                if not (s0 <= dtime <= s1):
                    continue  # Cull what's out of the interval

                droundtime = round_time(dtime, 60*60)
                dkey = droundtime.strftime(precision)

                x_hee = None
                y_hee = None
                if dkey in orbit_data:
                    x_hee = orbit_data[dkey][0] / ASTRONOMICAL_UNIT_IN_KM
                    y_hee = orbit_data[dkey][1] / ASTRONOMICAL_UNIT_IN_KM

                # First exception: V may be a vector instead of a scalar
                if hasattr(datum_v, '__len__'):
                    vrad = datum_v[0]
                    vtan = datum_v[1]
                    vtot = sqrt(vrad * vrad + vtan * vtan)
                else:  # eg: Earth
                    vrad = None
                    vtan = None
                    vtot = datum_v

                # Second exception: Earth is always at (1, 0)
                if target_config['slug'] == 'earth':
                    x_hee = 1
                    y_hee = 0

                # Third exception: B is a Vector3 or a Vector2 for Earth
                if target_config['slug'] == 'earth':
                    if model['slug'] == 'omni_hour_all':  # Vector3
                        datum_b = datum_b[0]
                    # if model['slug'] == 'ace_swepam_real':  # Vector2
                    #     datum_b = datum_b[0]
56028f6d   Myriam Bouchemit   bug for dyn press...
811
812
813
                    #if model['slug'] == 'omni_hour_all':
                    #    datum_p = datum_n * vtot * vtot * 1.6726e-6  # ?
                    if model['slug'] == 'ace_swepam_real_1h':
81cb3ba6   Goutte   Fix an issue with...
814
815
816
817
                        datum_p = datum_n * vtot * vtot * 1.6726e-6  # ?
                    if vtot is None or isnan(vtot):
                        continue

7176ae9b   Goutte   Fix Myriam's cont...
818
819
820
821
822
                # Fourth exception: Earth temp is in K, not eV
                # @nandre: à vérifier ! Where is la constante de Boltzmann ?
                if target_config['slug'] == 'earth' and datum_t:
                    datum_t = datum_t / 11605.0

81cb3ba6   Goutte   Fix an issue with...
823
824
                # Keep adding exceptions here until you can't or become mad

2be8e8a0   Goutte   Ignore bad data.
825
                # Ignore bad data
ff11e121   Goutte   Don't ignore bad ...
826
827
                # if numpy.isnan(datum_t):
                #     continue
2be8e8a0   Goutte   Ignore bad data.
828

81cb3ba6   Goutte   Fix an issue with...
829
830
831
832
833
834
835
836
837
838
839
840
841
842
843
844
845
846
                # Crude/Bad drizzling condition : first found datum in the hour
                # gets to set the data. Improve this.
                if dkey not in all_data:
                    # /!. The Set value MUST be in the same order as PROPERTIES
                    all_data[dkey] = (
                        dtime.strftime("%Y-%m-%dT%H:%M:%S+00:00"),
                        vrad, vtan, vtot,
                        datum_b, datum_t, datum_p, datum_n, datum_a,
                        x_hee, y_hee
                    )
                else:
                    ignored_count += 1

            # Improve this loop so as to remove this stinky debug log
            if ignored_count > 0:
                log.debug("    Ignored %d datum(s) during ~\"drizzling\"."
                          % ignored_count)

58bfe281   Goutte   Handle start and ...
847
            cdf_handle.close()
8644387c   Goutte   Use real data.
848

180d7d97   Goutte   Refactor heavily.
849
850
851
    return all_data


297a7dfc   Goutte   Add support for i...
852
def generate_csv_contents(target_slug, input_slug, started_at, stopped_at):
180d7d97   Goutte   Refactor heavily.
853
854
855
856
857
858
    target_config = get_target_config(target_slug)
    log.debug("Crunching CSV contents for '%s'..." % target_config['name'])
    si = StringIO.StringIO()
    cw = csv_writer(si)
    cw.writerow(PROPERTIES)

297a7dfc   Goutte   Add support for i...
859
860
861
862
    all_data = get_data_for_target(
        target_config=target_config, input_slug=input_slug,
        started_at=started_at, stopped_at=stopped_at
    )
180d7d97   Goutte   Refactor heavily.
863
864

    log.debug("Writing and sorting CSV for '%s'..." % target_config['slug'])
8644387c   Goutte   Use real data.
865
866
    for dkey in sorted(all_data):
        cw.writerow(all_data[dkey])
2d2af24b   Goutte   Add a basic orbit...
867

180d7d97   Goutte   Refactor heavily.
868
    log.info("Generated CSV contents for '%s'." % target_config['slug'])
2d2af24b   Goutte   Add a basic orbit...
869
870
    return si.getvalue()

8644387c   Goutte   Use real data.
871

de97d643   Goutte   Fix more bugs.
872
873
def generate_csv_file_if_needed(target_slug, input_slug,
                                started_at, stopped_at):
297a7dfc   Goutte   Add support for i...
874
875
876
    filename = "%s_%s_%s_%s.csv" % (target_slug, input_slug,
                                    started_at.strftime(FILE_DATE_FMT),
                                    stopped_at.strftime(FILE_DATE_FMT))
e18701b6   Goutte   Cache clear (remo...
877
    local_csv_file = join(CACHE_DIR, filename)
80352490   Goutte   Multi model suppo...
878
879
880

    generate = True
    if isfile(local_csv_file):
297a7dfc   Goutte   Add support for i...
881
        # It needs to have more than one line to not be empty (headers)
80352490   Goutte   Multi model suppo...
882
883
884
885
886
887
888
889
890
        with open(local_csv_file) as f:
            cnt = 0
            for _ in f:
                cnt += 1
                if cnt > 1:
                    generate = False
                    break

    if generate:
c0df94bc   Goutte   Adding more logs.
891
892
893
        log.info("Generating CSV '%s'..." % local_csv_file)
        try:
            with open(local_csv_file, mode="w+") as f:
de97d643   Goutte   Fix more bugs.
894
895
896
897
                f.write(generate_csv_contents(
                    target_slug=target_slug, input_slug=input_slug,
                    started_at=started_at, stopped_at=stopped_at
                ))
c0df94bc   Goutte   Adding more logs.
898
899
            log.info("Generation of '%s' done." % filename)
        except Exception as e:
d1c44c51   Goutte   Enable Earth
900
901
902
            from sys import exc_info
            from traceback import extract_tb
            exc_type, exc_value, exc_traceback = exc_info()
dc0be992   Goutte   Support having no...
903
            log.error(e)
d1c44c51   Goutte   Enable Earth
904
905
            for trace in extract_tb(exc_traceback):
                log.error(trace)
5ede388f   Goutte   Make sure failed ...
906
            if isfile(local_csv_file):
92abc15b   Goutte   Mistrust the API ...
907
                log.warn("Removing failed CSV '%s'..." % local_csv_file)
5ede388f   Goutte   Make sure failed ...
908
                removefile(local_csv_file)
9bfa6c42   Goutte   More bug hunting.
909
            abort(500, "Failed creating CSV '%s' : %s" % (filename, e))
c0df94bc   Goutte   Adding more logs.
910
911


e18701b6   Goutte   Cache clear (remo...
912
913
914
915
916
917
918
919
920
921
922
923
924
925
926
927
928
929
930
931
932
933
934
def remove_all_files(in_directory):
    """
    Will throw if something horrible happens.
    Does not remove recursively (could be done with os.walk if needed).
    Does not remove directories either.
    :param in_directory: absolute path to directory
    :return:
    """
    import os

    if not os.path.isdir(in_directory):
        raise ValueError("No directory to clean at '%s'.")

    removed_files = []
    for file_name in os.listdir(in_directory):
        file_path = os.path.join(in_directory, file_name)
        if os.path.isfile(file_path):
            os.remove(file_path)
            removed_files.append(file_path)

    return removed_files


28bb4b28   Goutte   API for the cache...
935
936
def remove_files_created_before(date, in_directory):
    """
077980eb   Goutte   Improve availabil...
937
938
939
    Will throw if something horrible happens.
    Does not remove recursively (could be done with os.walk if needed).
    Does not remove directories either.
28bb4b28   Goutte   API for the cache...
940
    :param date: datetime object
077980eb   Goutte   Improve availabil...
941
    :param in_directory: absolute path to directory
28bb4b28   Goutte   API for the cache...
942
943
944
945
946
947
948
    :return:
    """
    import os
    import time

    secs = time.mktime(date.timetuple())

077980eb   Goutte   Improve availabil...
949
950
    if not os.path.isdir(in_directory):
        raise ValueError("No directory to clean at '%s'.")
28bb4b28   Goutte   API for the cache...
951
952
953
954

    removed_files = []
    for file_name in os.listdir(in_directory):
        file_path = os.path.join(in_directory, file_name)
077980eb   Goutte   Improve availabil...
955
956
957
958
959
        if os.path.isfile(file_path):
            t = os.stat(file_path)
            if t.st_ctime < secs:
                os.remove(file_path)
                removed_files.append(file_path)
28bb4b28   Goutte   API for the cache...
960
961
962
963

    return removed_files


297a7dfc   Goutte   Add support for i...
964
965
966
967
968
def get_input_slug_from_query(inp=None):
    if inp is None:
        input_slug = request.args.get('input_slug', 'l1')
    else:
        input_slug = inp
de97d643   Goutte   Fix more bugs.
969
    if input_slug not in [i['slug'] for i in config['inputs']]:
297a7dfc   Goutte   Add support for i...
970
971
972
973
        input_slug = 'l1'  # be tolerant instead of yelling loudly
    return input_slug


284f4688   Goutte   Continue layers i...
974
975
976
def get_interval_from_query():
    """
    Get the interval from the query, or from defaults.
3309d7c3   Goutte   Improve the date ...
977
    Returns ISO date strings.
284f4688   Goutte   Continue layers i...
978
979
980
981
982
983
984
985
986
987
988
989
    """
    before = relativedelta(months=2)
    after = relativedelta(months=1)
    today = datetime.datetime.now().replace(hour=0, minute=0, second=0)
    started_at = today - before
    stopped_at = today + after
    default_started_at = started_at.strftime(FILE_DATE_FMT)
    default_stopped_at = stopped_at.strftime(FILE_DATE_FMT)

    started_at = request.args.get('started_at', default_started_at)
    stopped_at = request.args.get('stopped_at', default_stopped_at)

3309d7c3   Goutte   Improve the date ...
990
991
992
993
994
    d_started_at = dateparser.isoparse(started_at)
    d_stopped_at = dateparser.isoparse(stopped_at)
    started_at = d_started_at.strftime(FILE_DATE_FMT)
    stopped_at = d_stopped_at.strftime(FILE_DATE_FMT)

284f4688   Goutte   Continue layers i...
995
996
997
    return started_at, stopped_at


1185f353   Goutte   Fix the CME Catal...
998
def get_catalog_layers(input_slug, target_slug, started_at, stopped_at):
0332f168   Goutte   Initial support f...
999
    """
284f4688   Goutte   Continue layers i...
1000
1001
    In the JSON file we have "columns" and "data".
    Of course, each JSON file has its own columns, with different conventions.
0332f168   Goutte   Initial support f...
1002
1003
1004
1005
1006
    
    :param input_slug: 
    :param target_slug: 
    :return: 
    """
0332f168   Goutte   Initial support f...
1007
    import json
2204c3f7   Goutte   Improve layers co...
1008
1009

    def _get_index_of_key(_data, _key):
2204c3f7   Goutte   Improve layers co...
1010
1011
1012
1013
1014
1015
1016
        try:
            index = _data['columns'].index(_key)
        except ValueError:
            log.error("Key %s not found in columns of %s" % (_key, _data))
            raise
        return index

1185f353   Goutte   Fix the CME Catal...
1017
1018
1019
1020
1021
1022
1023
1024
1025
    try:
        started_at = datetime.datetime.strptime(started_at, FILE_DATE_FMT)
    except:
        abort(400, "Invalid started_at parameter : '%s'." % started_at)
    try:
        stopped_at = datetime.datetime.strptime(stopped_at, FILE_DATE_FMT)
    except:
        abort(400, "Invalid stopped_at parameter : '%s'." % stopped_at)

0332f168   Goutte   Initial support f...
1026
    catalog_layers = {}
1ab47144   Goutte   Add new menus, up...
1027
    for config_layer in config['layers']['catalogs']:
0332f168   Goutte   Initial support f...
1028
1029
        if 'data' not in config_layer:
            continue
0332f168   Goutte   Initial support f...
1030
1031
1032
1033
1034
1035
        catalog_layers[config_layer['slug']] = []
        for cl_datum in config_layer['data']:
            if input_slug not in cl_datum:
                continue
            if target_slug not in cl_datum[input_slug]:
                continue
b03d5eb1   Goutte   Add the last CME ...
1036
1037
1038
1039
1040
            if cl_datum[input_slug][target_slug] is None:
                # We used ~ in the config, there are no constraints
                constraints = []
            else:
                constraints = cl_datum[input_slug][target_slug]['constraints']
1185f353   Goutte   Fix the CME Catal...
1041

0332f168   Goutte   Initial support f...
1042
1043
            with open(get_path("../data/catalog/%s" % cl_datum['file'])) as f:
                json_data = json.load(f)
284f4688   Goutte   Continue layers i...
1044
1045
1046
                if 'start' not in cl_datum:
                    log.error("Invalid configuration: 'start' is missing.")
                    continue  # skip this
1185f353   Goutte   Fix the CME Catal...
1047
                if 'format' not in cl_datum:
54bb1311   Goutte   Bring back the CM...
1048
1049
1050
                    cl_datum['format'] = CME_DATE_FMT
                    # log.error("Invalid configuration: 'format' is missing.")
                    # continue  # skip this
284f4688   Goutte   Continue layers i...
1051
1052
1053
1054
1055
                start_index = _get_index_of_key(json_data, cl_datum['start'])
                if 'stop' not in cl_datum:
                    stop_index = start_index
                else:
                    stop_index = _get_index_of_key(json_data, cl_datum['stop'])
2204c3f7   Goutte   Improve layers co...
1056

0332f168   Goutte   Initial support f...
1057
                for json_datum in json_data['data']:
2204c3f7   Goutte   Improve layers co...
1058
                    validates_any_constraint = False
b03d5eb1   Goutte   Add the last CME ...
1059
1060
                    if 0 == len(constraints):
                        validates_any_constraint = True
2204c3f7   Goutte   Improve layers co...
1061
1062
1063
1064
1065
1066
1067
1068
1069
1070
1071
1072
1073
                    for constraint in constraints:
                        validates_constraint = True
                        for key, possible_values in constraint.iteritems():
                            actual_value = json_datum[_get_index_of_key(
                                json_data, key
                            )]
                            if actual_value not in possible_values:
                                validates_constraint = False
                                break
                        if validates_constraint:
                            validates_any_constraint = True
                            break
                    if not validates_any_constraint:
0332f168   Goutte   Initial support f...
1074
                        continue
284f4688   Goutte   Continue layers i...
1075
1076
                    start_time = json_datum[start_index]
                    stop_time = json_datum[stop_index]
1185f353   Goutte   Fix the CME Catal...
1077
1078
1079
1080
1081
1082
1083
1084
1085
1086
1087

                    start_time = datetime.datetime.strptime(
                        start_time, cl_datum['format']
                    )
                    stop_time = datetime.datetime.strptime(
                        stop_time, cl_datum['format']
                    )

                    if start_time < started_at:
                        continue

0332f168   Goutte   Initial support f...
1088
                    catalog_layers[config_layer['slug']].append({
1185f353   Goutte   Fix the CME Catal...
1089
1090
                        'start': start_time.strftime(MOMENT_DATE_FMT),
                        'stop':  stop_time.strftime(MOMENT_DATE_FMT),
0332f168   Goutte   Initial support f...
1091
                    })
0332f168   Goutte   Initial support f...
1092
1093
1094
1095

    return catalog_layers


077980eb   Goutte   Improve availabil...
1096
1097
1098
1099
1100
1101
1102
1103
1104
1105
1106
def get_hit_counter():
    hit_count_path = get_path("../VISITS")

    if isfile(hit_count_path):
        hit_count = int(open(hit_count_path).read())
    else:
        hit_count = 1

    return hit_count


a4a9ef03   Goutte   Cache generated C...
1107
1108
1109
1110
1111
1112
1113
1114
1115
1116
1117
1118
1119
1120
1121
1122
def increment_hit_counter():
    hit_count_path = get_path("../VISITS")

    if isfile(hit_count_path):
        hit_count = int(open(hit_count_path).read())
        hit_count += 1
    else:
        hit_count = 1

    hit_counter_file = open(hit_count_path, 'w')
    hit_counter_file.write(str(hit_count))
    hit_counter_file.close()

    return hit_count


4aaf6874   Goutte   Try fixing the ge...
1123
1124
def update_spacepy():
    """
11d86851   Goutte   Add support for s...
1125
    Importing pycdf will fail if the toolbox is not up to date.
4aaf6874   Goutte   Try fixing the ge...
1126
    """
4aaf6874   Goutte   Try fixing the ge...
1127
1128
1129
1130
1131
1132
1133
1134
1135
    try:
        log.info("Updating spacepy's toolbox…")
        import spacepy.toolbox

        spacepy.toolbox.update()
    except Exception as e:
        log.error("Failed to update spacepy : %s." % e)


077980eb   Goutte   Improve availabil...
1136
1137
1138
tpl_global_vars['visits'] = get_hit_counter()


a4a9ef03   Goutte   Cache generated C...
1139
1140
1141
# ROUTING #####################################################################

@app.route('/favicon.ico')
bde97e4d   Goutte   Add more changes ...
1142
def favicon():  # we want it served from the root, not from static/
a4a9ef03   Goutte   Cache generated C...
1143
1144
1145
1146
1147
1148
1149
1150
1151
1152
    return send_from_directory(
        join(app.root_path, 'static', 'img'),
        'favicon.ico', mimetype='image/vnd.microsoft.icon'
    )


@app.route("/")
@app.route("/home.html")
@app.route("/index.html")
def home():
077980eb   Goutte   Improve availabil...
1153
    increment_hit_counter()
bde97e4d   Goutte   Add more changes ...
1154
1155
    parameters = PARAMETERS.values()
    parameters.sort(key=lambda x: x['position'])
297a7dfc   Goutte   Add support for i...
1156
    input_slug = get_input_slug_from_query()
0332f168   Goutte   Initial support f...
1157
    targets = [t for t in config['targets'] if not t['locked']]
284f4688   Goutte   Continue layers i...
1158
    started_at, stopped_at = get_interval_from_query()
0332f168   Goutte   Initial support f...
1159
1160
    for i, target in enumerate(targets):
        targets[i]['catalog_layers'] = get_catalog_layers(
1185f353   Goutte   Fix the CME Catal...
1161
            input_slug, target['slug'], started_at, stopped_at
0332f168   Goutte   Initial support f...
1162
        )
a4a9ef03   Goutte   Cache generated C...
1163
    return render_view('home.html.jinja2', {
0332f168   Goutte   Initial support f...
1164
1165
        # 'targets': config['targets'],
        'targets': targets,
bde97e4d   Goutte   Add more changes ...
1166
        'parameters': parameters,
297a7dfc   Goutte   Add support for i...
1167
        'input_slug': input_slug,
284f4688   Goutte   Continue layers i...
1168
1169
        'started_at': started_at,
        'stopped_at': stopped_at,
a4a9ef03   Goutte   Cache generated C...
1170
1171
1172
        'planets': [s for s in config['targets'] if s['type'] == 'planet'],
        'probes':  [s for s in config['targets'] if s['type'] == 'probe'],
        'comets':  [s for s in config['targets'] if s['type'] == 'comet'],
077980eb   Goutte   Improve availabil...
1173
        'visits':  get_hit_counter(),
a4a9ef03   Goutte   Cache generated C...
1174
1175
1176
    })


64a671cd   Goutte   Add an About page.
1177
1178
@app.route("/about.html")
def about():
36961d6f   Goutte   Slightly improve ...
1179
    import uuid
64a671cd   Goutte   Add an About page.
1180
1181
    increment_hit_counter()
    return render_view('about.html.jinja2', {
36961d6f   Goutte   Slightly improve ...
1182
1183
1184
        'authors_emails': [a['mail'] for a in config['authors']],
        'uuid4': str(uuid.uuid4())[0:3],
        'visits': get_hit_counter(),
64a671cd   Goutte   Add an About page.
1185
1186
1187
    })


6288347a   Goutte   Add the HELP page...
1188
1189
1190
1191
1192
1193
1194
@app.route("/help.html")
def help():
    return render_view('help.html.jinja2', {
        'visits': get_hit_counter(),
    })


297a7dfc   Goutte   Add support for i...
1195
1196
@app.route("/<target>_<inp>_<started_at>_<stopped_at>.csv")
def download_target_csv(target, inp, started_at, stopped_at):
a4a9ef03   Goutte   Cache generated C...
1197
1198
1199
1200
    """
    Grab data and orbit data for the specified `target`,
    rearrange it and return it as a CSV file.
    `started_at` and `stopped_at` should be UTC.
297a7dfc   Goutte   Add support for i...
1201
    `inp` is the input slug, l1 or sa or sb.
a4a9ef03   Goutte   Cache generated C...
1202
    """
180d7d97   Goutte   Refactor heavily.
1203
    check_target_config(target)
a4a9ef03   Goutte   Cache generated C...
1204
    try:
c0df94bc   Goutte   Adding more logs.
1205
        started_at = datetime.datetime.strptime(started_at, FILE_DATE_FMT)
a4a9ef03   Goutte   Cache generated C...
1206
1207
1208
    except:
        abort(400, "Invalid started_at parameter : '%s'." % started_at)
    try:
c0df94bc   Goutte   Adding more logs.
1209
        stopped_at = datetime.datetime.strptime(stopped_at, FILE_DATE_FMT)
a4a9ef03   Goutte   Cache generated C...
1210
1211
    except:
        abort(400, "Invalid stopped_at parameter : '%s'." % stopped_at)
297a7dfc   Goutte   Add support for i...
1212
    input_slug = get_input_slug_from_query(inp=inp)
a4a9ef03   Goutte   Cache generated C...
1213

297a7dfc   Goutte   Add support for i...
1214
1215
1216
    filename = "%s_%s_%s_%s.csv" % (target, input_slug,
                                    started_at.strftime(FILE_DATE_FMT),
                                    stopped_at.strftime(FILE_DATE_FMT))
e18701b6   Goutte   Cache clear (remo...
1217
    local_csv_file = join(CACHE_DIR, filename)
297a7dfc   Goutte   Add support for i...
1218
1219
1220
1221
    generate_csv_file_if_needed(
        target_slug=target, input_slug=input_slug,
        started_at=started_at, stopped_at=stopped_at
    )
a4a9ef03   Goutte   Cache generated C...
1222
1223
1224
    if not isfile(local_csv_file):
        abort(500, "Could not cache CSV file at '%s'." % local_csv_file)

e18701b6   Goutte   Cache clear (remo...
1225
    return send_from_directory(CACHE_DIR, filename)
a4a9ef03   Goutte   Cache generated C...
1226
1227


297a7dfc   Goutte   Add support for i...
1228
1229
@app.route("/<targets>_<inp>_<started_at>_<stopped_at>.tar.gz")
def download_targets_tarball(targets, inp, started_at, stopped_at):
b2837a08   Goutte   Add three retries...
1230
    """
bc18b96c   Goutte   Implement first (...
1231
1232
1233
    Grab data and orbit data for each of the specified `targets`,
    in their own CSV file, and make a tarball of them.
    `started_at` and `stopped_at` should be UTC strings.
b2837a08   Goutte   Add three retries...
1234

ea6c8d5d   Goutte   Add interval cons...
1235
1236
    Note: we do not use this route anymore, but let's keep it shelved for now.

2fedd73b   Goutte   Initial implement...
1237
    targets: string list of targets' slugs, separated by `-`.
b2837a08   Goutte   Add three retries...
1238
    """
2fedd73b   Goutte   Initial implement...
1239
    separator = '-'
0511eed7   Goutte   Tarball generatio...
1240
1241
    targets = targets.split(separator)
    targets.sort()
2fedd73b   Goutte   Initial implement...
1242
1243
    targets_configs = []
    for target in targets:
b2837a08   Goutte   Add three retries...
1244
1245
        if not target:
            abort(400, "Invalid targets format : `%s`." % targets)
180d7d97   Goutte   Refactor heavily.
1246
        targets_configs.append(get_target_config(target))
2fedd73b   Goutte   Initial implement...
1247
    if 0 == len(targets_configs):
b2837a08   Goutte   Add three retries...
1248
1249
        abort(400, "No valid targets specified. What are you doing?")

b2837a08   Goutte   Add three retries...
1250
    try:
ea6c8d5d   Goutte   Add interval cons...
1251
        started_at = datetime.datetime.strptime(started_at, FILE_DATE_FMT)
b2837a08   Goutte   Add three retries...
1252
1253
1254
    except:
        abort(400, "Invalid started_at parameter : '%s'." % started_at)
    try:
ea6c8d5d   Goutte   Add interval cons...
1255
        stopped_at = datetime.datetime.strptime(stopped_at, FILE_DATE_FMT)
b2837a08   Goutte   Add three retries...
1256
1257
    except:
        abort(400, "Invalid stopped_at parameter : '%s'." % stopped_at)
ea6c8d5d   Goutte   Add interval cons...
1258
1259
    sta = started_at.strftime(FILE_DATE_FMT)
    sto = stopped_at.strftime(FILE_DATE_FMT)
b2837a08   Goutte   Add three retries...
1260

297a7dfc   Goutte   Add support for i...
1261
1262
1263
1264
1265
    input_slug = get_input_slug_from_query(inp=inp)

    gzip_filename = "%s_%s_%s_%s.tar.gz" % (
        separator.join(targets), input_slug, sta, sto
    )
e18701b6   Goutte   Cache clear (remo...
1266
    local_gzip_file = join(CACHE_DIR, gzip_filename)
2fedd73b   Goutte   Initial implement...
1267
1268

    if not isfile(local_gzip_file):
0511eed7   Goutte   Tarball generatio...
1269
        log.debug("Creating the CSV files for the tarball...")
2fedd73b   Goutte   Initial implement...
1270
        for target_config in targets_configs:
297a7dfc   Goutte   Add support for i...
1271
1272
1273
            filename = "%s_%s_%s_%s.csv" % (
                target_config['slug'], input_slug, sta, sto
            )
e18701b6   Goutte   Cache clear (remo...
1274
            local_csv_file = join(CACHE_DIR, filename)
2fedd73b   Goutte   Initial implement...
1275
1276
            if not isfile(local_csv_file):
                with open(local_csv_file, mode="w+") as f:
297a7dfc   Goutte   Add support for i...
1277
1278
1279
1280
1281
1282
                    f.write(generate_csv_contents(
                        target_slug=target_config['slug'],
                        started_at=started_at,
                        stopped_at=stopped_at,
                        input_slug=input_slug
                    ))
2fedd73b   Goutte   Initial implement...
1283

0511eed7   Goutte   Tarball generatio...
1284
        log.debug("Creating the tarball '%s'..." % local_gzip_file)
2fedd73b   Goutte   Initial implement...
1285
1286
        with tarfile.open(local_gzip_file, "w:gz") as tar:
            for target_config in targets_configs:
297a7dfc   Goutte   Add support for i...
1287
1288
1289
                filename = "%s_%s_%s_%s.csv" % (
                    target_config['slug'], input_slug, sta, sto
                )
e18701b6   Goutte   Cache clear (remo...
1290
                local_csv_file = join(CACHE_DIR, filename)
2fedd73b   Goutte   Initial implement...
1291
1292
1293
                tar.add(local_csv_file, arcname=filename)

    if not isfile(local_gzip_file):
0511eed7   Goutte   Tarball generatio...
1294
        abort(500, "No tarball to serve. Looked at '%s'." % local_gzip_file)
2fedd73b   Goutte   Initial implement...
1295

e18701b6   Goutte   Cache clear (remo...
1296
    return send_from_directory(CACHE_DIR, gzip_filename)
b2837a08   Goutte   Add three retries...
1297

28bb4b28   Goutte   API for the cache...
1298

297a7dfc   Goutte   Add support for i...
1299
1300
@app.route("/<targets>_<inp>_<params>_<started_at>_<stopped_at>.nc")
def download_targets_netcdf(targets, inp, params, started_at, stopped_at):
bc18b96c   Goutte   Implement first (...
1301
    """
4aaf6874   Goutte   Try fixing the ge...
1302
1303
    NOTE : This is not used anymore.
    
bc18b96c   Goutte   Implement first (...
1304
    Grab data and orbit data for the specified `target`,
aa7247d6   Goutte   Generate a CDF fi...
1305
    rearrange it and return it as a NetCDF file.
e18701b6   Goutte   Cache clear (remo...
1306
    `started_at` and `stopped_at` are expected to be UTC.
bc18b96c   Goutte   Implement first (...
1307
1308
1309
1310

    targets: string list of targets' slugs, separated by `-`.
    params: string list of targets' parameters, separated by `-`.
    """
e18701b6   Goutte   Cache clear (remo...
1311
    separator = '-'  # /!\ this char should never be in target's slugs
bc18b96c   Goutte   Implement first (...
1312
1313
1314
1315
1316
1317
1318
1319
1320
    targets = targets.split(separator)
    targets.sort()
    targets_configs = []
    for target in targets:
        if not target:
            abort(400, "Invalid targets format : `%s`." % targets)
        targets_configs.append(get_target_config(target))
    if 0 == len(targets_configs):
        abort(400, "No valid targets specified. What are you doing?")
4aaf6874   Goutte   Try fixing the ge...
1321

bc18b96c   Goutte   Implement first (...
1322
1323
1324
1325
1326
1327
1328
    params = params.split(separator)
    params.sort()
    if 0 == len(params):
        abort(400, "No valid parameters specified. What are you doing?")
    if not is_list_in_list(params, PARAMETERS.keys()):
        abort(400, "Some parameters are not recognized in '%s'." % str(params))

57493104   Goutte   Add the time to t...
1329
    date_fmt = FILE_DATE_FMT
bc18b96c   Goutte   Implement first (...
1330
1331
1332
1333
1334
1335
1336
1337
1338
1339
1340
    try:
        started_at = datetime.datetime.strptime(started_at, date_fmt)
    except:
        abort(400, "Invalid started_at parameter : '%s'." % started_at)
    try:
        stopped_at = datetime.datetime.strptime(stopped_at, date_fmt)
    except:
        abort(400, "Invalid stopped_at parameter : '%s'." % stopped_at)
    sta = started_at.strftime(date_fmt)
    sto = stopped_at.strftime(date_fmt)

297a7dfc   Goutte   Add support for i...
1341
1342
1343
1344
1345
    input_slug = get_input_slug_from_query(inp=inp)

    nc_filename = "%s_%s_%s_%s_%s.nc" % (
        separator.join(targets), separator.join(params), input_slug, sta, sto
    )
e18701b6   Goutte   Cache clear (remo...
1346
    nc_path = join(CACHE_DIR, nc_filename)
bc18b96c   Goutte   Implement first (...
1347
1348
1349
1350
1351

    if not isfile(nc_path):
        log.debug("Creating the NetCDF file '%s'..." % nc_filename)
        nc_handle = Dataset(nc_path, "w", format="NETCDF4")
        try:
ea6c8d5d   Goutte   Add interval cons...
1352
            nc_handle.description = "Model and orbit data for targets"  # todo
bc18b96c   Goutte   Implement first (...
1353
            nc_handle.history = "Created " + time.ctime(time.time())
ea6c8d5d   Goutte   Add interval cons...
1354
            nc_handle.source = "Heliopropa (CDDP)"
bc18b96c   Goutte   Implement first (...
1355
1356
1357
1358
1359
            available_params = list(PROPERTIES)
            for target in targets_configs:
                target_slug = target['slug']
                log.debug("Adding group '%s' to the NetCDF..." % target_slug)
                nc_group = nc_handle.createGroup(target_slug)
297a7dfc   Goutte   Add support for i...
1360
1361
1362
1363
                data = get_data_for_target(
                    target_config=target, input_slug=input_slug,
                    started_at=started_at, stopped_at=stopped_at
                )
bc18b96c   Goutte   Implement first (...
1364
                dkeys = sorted(data)
ceeb2f4a   Goutte   Add the target co...
1365
1366
                dimension = 'dim_'+target_slug
                nc_handle.createDimension(dimension, len(dkeys))
57493104   Goutte   Add the time to t...
1367
1368

                # TIME #
ceeb2f4a   Goutte   Add the target co...
1369
                nc_time = nc_group.createVariable('time', 'i8', (dimension,))
57493104   Goutte   Add the time to t...
1370
1371
1372
1373
1374
1375
1376
1377
1378
1379
1380
1381
                nc_time.units = "hours since 1970-01-01 00:00:00"
                nc_time.calendar = "standard"
                times = []
                for dkey in dkeys:
                    time_as_string = data[dkey][0][:-6]  # remove +00:00 tail
                    date = datetime.datetime.strptime(time_as_string, date_fmt)
                    times.append(date2num(
                        date, units=nc_time.units, calendar=nc_time.calendar
                    ))
                nc_time[:] = times

                # SELECTED PARAMETERS #
bc18b96c   Goutte   Implement first (...
1382
1383
1384
1385
                nc_vars = []
                indices = []
                for param in params:
                    indices.append(available_params.index(param))
ceeb2f4a   Goutte   Add the target co...
1386
                    nc_var = nc_group.createVariable(param, 'f8', (dimension,))
5a6d4498   Goutte   Add a title to ea...
1387
                    nc_var.units = PARAMETERS[param]['units']
bc18b96c   Goutte   Implement first (...
1388
1389
1390
1391
1392
1393
1394
1395
                    nc_vars.append(nc_var)
                for i, nc_var in enumerate(nc_vars):
                    index = indices[i]
                    values = []
                    for dkey in dkeys:
                        dval = data[dkey]
                        values.append(dval[index])
                    nc_var[:] = values
ceeb2f4a   Goutte   Add the target co...
1396
1397

                # ORBIT #
6491a1f1   Goutte   Fix up the bugs l...
1398
                nc_x = nc_group.createVariable('xhee', 'f8', (dimension,))
ceeb2f4a   Goutte   Add the target co...
1399
                nc_x.units = 'Au'
6491a1f1   Goutte   Fix up the bugs l...
1400
                nc_y = nc_group.createVariable('yhee', 'f8', (dimension,))
ceeb2f4a   Goutte   Add the target co...
1401
1402
1403
                nc_y.units = 'Au'
                values_x = []
                values_y = []
6491a1f1   Goutte   Fix up the bugs l...
1404
1405
                index_x = available_params.index('xhee')
                index_y = available_params.index('yhee')
ceeb2f4a   Goutte   Add the target co...
1406
1407
1408
1409
1410
1411
1412
1413
                for dkey in dkeys:
                    dval = data[dkey]
                    values_x.append(dval[index_x])
                    values_y.append(dval[index_y])
                nc_x[:] = values_x
                nc_y[:] = values_y
            log.debug("Writing NetCDF '%s'..." % nc_filename)

d1c44c51   Goutte   Enable Earth
1414
        except Exception:
57493104   Goutte   Add the time to t...
1415
            log.error("Failed to generate NetCDF '%s'." % nc_filename)
d1c44c51   Goutte   Enable Earth
1416
            raise
bc18b96c   Goutte   Implement first (...
1417
1418
1419
1420
1421
1422
        finally:
            nc_handle.close()

    if not isfile(nc_path):
        abort(500, "No NetCDF to serve. Looked at '%s'." % nc_path)

e18701b6   Goutte   Cache clear (remo...
1423
    return send_from_directory(CACHE_DIR, nc_filename)
bc18b96c   Goutte   Implement first (...
1424
1425


297a7dfc   Goutte   Add support for i...
1426
1427
@app.route("/<targets>_<inp>_<started_at>_<stopped_at>.cdf")
def download_targets_cdf(targets, inp, started_at, stopped_at):
aa7247d6   Goutte   Generate a CDF fi...
1428
1429
1430
1431
1432
1433
1434
1435
1436
1437
1438
1439
1440
1441
1442
1443
1444
1445
1446
1447
    """
    Grab data and orbit data for the specified `target`,
    rearrange it and return it as a CDF file.
    `started_at` and `stopped_at` are expected to be UTC.

    targets: string list of targets' slugs, separated by `-`.
    params: string list of targets' parameters, separated by `-`.
    """
    separator = '-'  # /!\ this char should never be in target's slugs
    targets = targets.split(separator)
    targets.sort()
    targets_configs = []
    for target in targets:
        if not target:
            abort(400, "Invalid targets format : `%s`." % targets)
        targets_configs.append(get_target_config(target))
    if 0 == len(targets_configs):
        abort(400, "No valid targets specified. What are you doing?")

    params = PARAMETERS.keys()
aa7247d6   Goutte   Generate a CDF fi...
1448
1449
1450
1451
1452
1453
1454
1455
1456
1457
1458
1459

    try:
        started_at = datetime.datetime.strptime(started_at, FILE_DATE_FMT)
    except:
        abort(400, "Invalid started_at parameter : '%s'." % started_at)
    try:
        stopped_at = datetime.datetime.strptime(stopped_at, FILE_DATE_FMT)
    except:
        abort(400, "Invalid stopped_at parameter : '%s'." % stopped_at)
    sta = started_at.strftime(FILE_DATE_FMT)
    sto = stopped_at.strftime(FILE_DATE_FMT)

297a7dfc   Goutte   Add support for i...
1460
1461
1462
1463
1464
    input_slug = get_input_slug_from_query(inp=inp)

    cdf_filename = "%s_%s_%s_%s.cdf" % (
        separator.join(targets), input_slug, sta, sto
    )
aa7247d6   Goutte   Generate a CDF fi...
1465
1466
1467
1468
    cdf_path = join(CACHE_DIR, cdf_filename)

    if not isfile(cdf_path):
        log.debug("Creating the CDF file '%s'..." % cdf_filename)
604616e4   Goutte   Misc changes from...
1469
        try:
8a48d5fa   Goutte   Make sure spacepy...
1470
            from spacepy import pycdf
4aaf6874   Goutte   Try fixing the ge...
1471
1472
1473
1474
1475
1476
1477
1478
1479
        except ImportError:
            # If spacepy's toolbox is not up-to-date, importing will fail.
            # So, let's update and try again !
            update_spacepy()
            try:
                from spacepy import pycdf
            except ImportError as e:
                log.error("Failed to import pycdf from spacepy : %s" % e)
                raise
2fe06b17   Goutte   Move the ENV dire...
1480
1481
1482
        except Exception as e:
            log.error("Failed to import pycdf from spacepy : %s" % e)
            raise
4aaf6874   Goutte   Try fixing the ge...
1483

8a48d5fa   Goutte   Make sure spacepy...
1484
        try:
952e3d8f   Goutte   Move to another s...
1485
            cdf_handle = pycdf.CDF(cdf_path, masterpath='')
54bb1311   Goutte   Bring back the CM...
1486
1487
            targets_names = ', '.join([t['name'] for t in targets_configs])
            description = "Model and orbit data for %s." % targets_names
952e3d8f   Goutte   Move to another s...
1488
1489
1490
            cdf_handle.attrs['Description'] = description
            cdf_handle.attrs['Author'] = "Heliopropa.irap.omp.eu (CDPP)"
            cdf_handle.attrs['Created'] = str(time.ctime(time.time()))
aa7247d6   Goutte   Generate a CDF fi...
1491

54bb1311   Goutte   Bring back the CM...
1492
1493
1494
1495
            # fixme: Try changing the name from 00 to something relevant
            cdf_handle.attrs['Title'] = "Heliopropa - %s" % targets_names
            #######

aa7247d6   Goutte   Generate a CDF fi...
1496
1497
1498
            available_params = list(PROPERTIES)
            for target in targets_configs:
                target_slug = target['slug']
297a7dfc   Goutte   Add support for i...
1499
1500
1501
1502
                data = get_data_for_target(
                    target_config=target, input_slug=input_slug,
                    started_at=started_at, stopped_at=stopped_at
                )
aa7247d6   Goutte   Generate a CDF fi...
1503
1504
1505
                dkeys = sorted(data)

                values = []
aa7247d6   Goutte   Generate a CDF fi...
1506
                for dkey in dkeys:
952e3d8f   Goutte   Move to another s...
1507
1508
1509
1510
                    time_str = data[dkey][0][:-6]  # remove +00:00 tail
                    date = datetime.datetime.strptime(time_str, FILE_DATE_FMT)
                    values.append(date)
                kt = "%s_time" % target_slug
4aaf6874   Goutte   Try fixing the ge...
1511
                cdf_handle.new(kt, type=pycdf.const.CDF_EPOCH)
952e3d8f   Goutte   Move to another s...
1512
                cdf_handle[kt] = values
4aaf6874   Goutte   Try fixing the ge...
1513
                # cdf_handle[kt].attrs['FIELDNAM'] = "Time since 0 A.D"
aa7247d6   Goutte   Generate a CDF fi...
1514
1515
1516

                for param in params:
                    k = "%s_%s" % (target_slug, param)
4aaf6874   Goutte   Try fixing the ge...
1517
                    # print("PARAM %s" % k)
aa7247d6   Goutte   Generate a CDF fi...
1518
1519
                    values = []
                    i = available_params.index(param)
4aaf6874   Goutte   Try fixing the ge...
1520
                    has_nones = False
aa7247d6   Goutte   Generate a CDF fi...
1521
                    for dkey in dkeys:
4aaf6874   Goutte   Try fixing the ge...
1522
1523
1524
1525
1526
1527
1528
1529
1530
                        value = data[dkey][i]
                        if value is None:
                            has_nones = True
                        values.append(value)
                    if has_nones:
                        # PyCDF hates it when there are Nones.
                        # Since we don't know what value to set instead,
                        # let's skip the param altogether.
                        continue
aa7247d6   Goutte   Generate a CDF fi...
1531
                    cdf_handle[k] = values
952e3d8f   Goutte   Move to another s...
1532
1533
1534
1535
1536
1537
1538
1539
1540
1541
                    attrs = cdf_handle[k].attrs
                    attrs['UNITS'] = PARAMETERS[param]['units']
                    attrs['LABLAXIS'] = PARAMETERS[param]['name']
                    attrs['FIELDNAM'] = PARAMETERS[param]['title']
                    if values:
                        attrs['VALIDMIN'] = min(values)
                        attrs['VALIDMAX'] = max(values)

                kx = "%s_xhee" % target_slug
                ky = "%s_yhee" % target_slug
aa7247d6   Goutte   Generate a CDF fi...
1542
1543
1544
1545
1546
                values_xhee = []
                values_yhee = []
                index_x = available_params.index('xhee')
                index_y = available_params.index('yhee')
                for dkey in dkeys:
391d581c   Goutte   Make the CDF down...
1547
1548
1549
                    value_xhee = data[dkey][index_x]
                    value_yhee = data[dkey][index_y]
                    # We've got some `None`s cropping up in the data sometimes.
4aaf6874   Goutte   Try fixing the ge...
1550
                    # PyCDF does not digest Nones at all.
391d581c   Goutte   Make the CDF down...
1551
1552
1553
1554
1555
                    # While they solve this upstream, let's make an ugly fix!
                    if (value_xhee is not None) and (value_yhee is not None):
                        values_xhee.append(value_xhee)
                        values_yhee.append(value_yhee)
                    else:
4aaf6874   Goutte   Try fixing the ge...
1556
1557
                        values_xhee.append(0)
                        values_yhee.append(0)
391d581c   Goutte   Make the CDF down...
1558
                        log.warn("Orbit data for %s has NaNs." % target_slug)
952e3d8f   Goutte   Move to another s...
1559
1560
1561
1562
                cdf_handle[kx] = values_xhee
                cdf_handle[ky] = values_yhee
                cdf_handle[kx].attrs['UNITS'] = 'Au'
                cdf_handle[ky].attrs['UNITS'] = 'Au'
aa7247d6   Goutte   Generate a CDF fi...
1563
1564

            log.debug("Writing CDF '%s'..." % cdf_filename)
952e3d8f   Goutte   Move to another s...
1565
1566
            cdf_handle.close()
            log.debug("Wrote CDF '%s'." % cdf_filename)
aa7247d6   Goutte   Generate a CDF fi...
1567
1568
1569

        except Exception as e:
            log.error("Failed to generate CDF '%s'." % cdf_filename)
952e3d8f   Goutte   Move to another s...
1570
1571
            if isfile(cdf_path):
                removefile(cdf_path)
aa7247d6   Goutte   Generate a CDF fi...
1572
1573
            raise

aa7247d6   Goutte   Generate a CDF fi...
1574
1575
1576
1577
1578
1579
    if not isfile(cdf_path):
        abort(500, "No CDF to serve. Looked at '%s'." % cdf_path)

    return send_from_directory(CACHE_DIR, cdf_filename)


11d86851   Goutte   Add support for s...
1580
1581
1582
1583
1584
1585
1586
1587
1588
1589
1590
1591
1592
1593
1594
1595
1596
1597
1598
1599
1600
1601
1602
1603
1604
1605
1606
1607
1608
1609
1610
1611
1612
1613
1614
1615
1616
1617
1618
1619
1620
1621
1622
1623
1624
1625
1626
1627
1628
1629
1630
1631
1632
1633
1634
@app.route("/<target>_auroral_catalog.csv")
def download_auroral_catalog_csv(target):
    tc = validate_tap_target_config(target)
    log.debug("Requesting auroral emissions CSV for %s..." % tc['name'])

    filename = "%s_auroral_catalog.csv" % (target)
    local_csv_file = join(CACHE_DIR, filename)


    target_name = tc['tap']['target_name']
    emissions = retrieve_auroral_emissions(target_name)

    # Be careful with regexes in python 2 ; best always use the ^$
    thumbnail_url_filter = re.compile("^.*proc(?:_small)?\\.(?:jpe?g|png|webp|gif|bmp|tiff)$")

    # Filter the emissions
    def _keep_emission(emission):
        ok = thumbnail_url_filter.match(emission['thumbnail_url'])
        # print("ok", ok, emission['thumbnail_url'])
        return bool(ok)

    emissions = [e for e in emissions if _keep_emission(e)]

    header = ('time_min', 'time_max', 'thumbnail_url', 'external_link')
    if len(emissions):
        header = emissions[0].keys()
    si = StringIO.StringIO()
    cw = csv_dict_writer(si, fieldnames=header)
    cw.writeheader()
    # 'time_min', 'time_max', 'thumbnail_url', 'external_link'
    #cw.writerow(head)

    log.debug("Writing auroral emissions CSV for %s..." % tc['name'])
    cw.writerows(emissions)

    log.info("Generated auroral emissions CSV contents for %s." % tc['name'])
    return si.getvalue()

    # if not isfile(local_csv_file):
    #     abort(500, "Could not cache CSV file at '%s'." % local_csv_file)
    #
    # return send_from_directory(CACHE_DIR, filename)




@app.route("/test/auroral/<target>")
def test_auroral_emissions(target):
    tc = validate_tap_target_config(target)
    target_name = tc['tap']['target_name']
    retrieved = retrieve_auroral_emissions(target_name)

    return "%d results:\n%s" % (len(retrieved), str(retrieved))


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# API #########################################################################

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@app.route("/cache/clear")
def cache_clear():
    """
    Removes all files from the cache.
    Note: It also removes the .gitkeep file. Not a problem for prod.
    """
    removed_files = remove_all_files(CACHE_DIR)
    count = len(removed_files)
    return "Cache cleared! Removed %d file%s." \
           % (count, 's' if count != 1 else '')


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@app.route("/cache/cleanup")
def cache_cleanup():
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    """
    Removes all files from the cache that are older than roughly one month.
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    Note: It also removes the .gitkeep file. Maybe it should not, but hey.
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    """
    a_month_ago = datetime.datetime.now() - datetime.timedelta(days=32)
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    removed_files = remove_files_created_before(a_month_ago, CACHE_DIR)
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    count = len(removed_files)
    return "Cache cleaned! Removed %d old file%s." \
           % (count, 's' if count != 1 else '')
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@app.route("/cache/warmup")
def cache_warmup():
    """
    Warms up the cache for the current day.
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    """
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    warmup_started_at = datetime.datetime.now()
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    sta, sto = get_interval_from_query()
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    inp = 'l1'  # default input, maybe warm them all up ?
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    targets = get_active_targets()
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    targets_slugs = [target['slug'] for target in targets]
    targets_slugs.sort()
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    update_spacepy()
    for target in targets:
        download_target_csv(target['slug'], inp, sta, sto)
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    download_targets_cdf('-'.join(targets_slugs), inp, sta, sto)
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    warmup_ended_at = datetime.datetime.now()
    warmup_timedelta = warmup_ended_at - warmup_started_at

    return "Done in %s." % str(warmup_timedelta)
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@app.route("/log")
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@app.route("/log.html")
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def log_show():
    with open(LOG_FILE, 'r') as f:
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        contents = f.read()
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    return "<pre>" + contents + "</pre>"
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@app.route("/log/clear")
def log_clear():
    with open(LOG_FILE, 'w') as f:
        f.truncate()
    return "Log cleared successfully."


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# DEV TOOLS ###################################################################

# @app.route("/inspect")
# def analyze_cdf():
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#     """
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#     For debug purposes.
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#     """
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#     cdf_to_inspect = get_path("../res/dummy.nc")
#     cdf_to_inspect = get_path("../res/dummy_jupiter_coordinates.nc")
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#
#     si = StringIO.StringIO()
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#     cw = csv.DictWriter(si, fieldnames=['Name', 'Shape', 'Length'])
#     cw.writeheader()
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#
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#     # Time, StartTime, StopTime, V, B, N, T, Delta_angle, P_dyn, QualityFlag
#     cdf_handle = Dataset(cdf_to_inspect, "r", format="NETCDF4")
#     for variable in cdf_handle.variables:
#         v = cdf_handle.variables[variable]
#         cw.writerow({
#             'Name': variable,
#             'Shape': v.shape,
#             'Length': v.size,
#         })
#     cdf_handle.close()
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#
#     return si.getvalue()


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# MAIN ########################################################################

if __name__ == "__main__":
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    # Debug mode is on, as the production server does not use this but run.wsgi
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    extra_files = [get_path('../config.yml')]
    app.run(debug=True, extra_files=extra_files)