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web/run.py 49.9 KB
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# coding=utf-8

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import StringIO
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import datetime
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import gzip
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import json
import logging
import random
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import tarfile
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import time
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import urllib
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from csv import writer as csv_writer
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from math import sqrt, isnan
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from os import environ, remove as removefile
from os.path import isfile, join, abspath, dirname

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from dateutil.relativedelta import relativedelta
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from flask import Flask
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from flask import request
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from flask import url_for, send_from_directory, abort as abort_flask
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from jinja2 import Environment, FileSystemLoader, Markup
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from netCDF4 import Dataset, date2num
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from yaml import load as yaml_load
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# PATH RELATIVITY #############################################################

THIS_DIRECTORY = dirname(abspath(__file__))


def get_path(relative_path):
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    """Get an absolute path from the relative path to this script directory."""
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    return abspath(join(THIS_DIRECTORY, relative_path))


# COLLECT GLOBAL INFORMATION FROM SOURCES #####################################

# VERSION
with open(get_path('../VERSION'), 'r') as version_file:
    version = version_file.read().strip()

# CONFIG
with open(get_path('../config.yml'), 'r') as config_file:
    config = yaml_load(config_file.read())

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FILE_DATE_FMT = "%Y-%m-%dT%H:%M:%S"

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# LOGGING #####################################################################

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LOG_FILE = get_path('run.log')

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log = logging.getLogger("HelioPropa")
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log.setLevel(logging.DEBUG)
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# log.setLevel(logging.ERROR)                        # <-- set log level here !
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logHandler = logging.FileHandler(LOG_FILE)
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logHandler.setFormatter(logging.Formatter(
    "%(asctime)s - %(levelname)s - %(message)s"
))
log.addHandler(logHandler)
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# HARDCODED CONFIGURATION #####################################################

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ASTRONOMICAL_UNIT_IN_KM = 1.496e8

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# Absolute path to the installed CDF library from https://cdf.gsfc.nasa.gov/
CDF_LIB = '/usr/local/lib/libcdf'

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# Absolute path to the data cache directory
CACHE_DIR = get_path('../cache')

# These two configs are not in the YAML config because adding a new parameter
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# will not work as-is, you'd have to edit some netcdf-related code.
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# The slugs of the available parameters in the generated CSV files.
# The order matters. If you change this you also need to change the
# innermost loop of `get_data_for_target`.
# The javascript knows the targets' properties under these names.
PROPERTIES = ('time', 'vrad', 'vtan', 'vtot', 'btan', 'temp', 'pdyn', 'dens',
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              'atse', 'xhee', 'yhee')
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# The parameters that the users can handle.
# The slug MUST be one of the properties above.
PARAMETERS = {
    'pdyn': {
        'slug': 'pdyn',
        'name': 'Dyn. Pressure',
        'title': 'The dynamic pressure.',
        'units': 'nPa',
        'active': True,
        'position': 10,
    },
    'vtot': {
        'slug': 'vtot',
        'name': 'Velocity',
        'title': 'The velocity of the particles.',
        'units': 'km/s',
        'active': False,
        'position': 20,
    },
    'btan': {
        'slug': 'btan',
        'name': 'B Tangential',
        'title': 'B Tangential.',
        'units': 'nT',
        'active': False,
        'position': 30,
    },
    'temp': {
        'slug': 'temp',
        'name': 'Temperature',
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        'title': 'The temperature.',
        'units': 'eV',
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        'active': False,
        'position': 40,
    },
    'dens': {
        'slug': 'dens',
        'name': 'Density',
        'title': 'The density N.',
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        'units': 'cm^-3',
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        'active': False,
        'position': 50,
    },
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    'atse': {
        'slug': 'atse',
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        'name': 'Angle T-S-E',
        'title': 'Angle Target-Sun-Earth.',
        'units': 'deg',
        'active': False,
        'position': 60,
    },
}


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# ENV #########################################################################

environ['SPACEPY'] = CACHE_DIR
environ['CDF_LIB'] = CDF_LIB


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# SETUP FLASK ENGINE ##########################################################

app = Flask(__name__, root_path=THIS_DIRECTORY)
app.debug = environ.get('DEBUG') == 'true'
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if app.debug:
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    log.info("Starting Flask app IN DEBUG MODE...")
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else:
    log.info("Starting Flask app...")
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# SETUP JINJA2 TEMPLATE ENGINE ################################################

def static_global(filename):
    return url_for('static', filename=filename)


def shuffle_filter(seq):
    """
    This shuffles the sequence it is applied to.
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    Jinja2 _should_ provide this.
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    """
    try:
        result = list(seq)
        random.shuffle(result)
        return result
    except:
        return seq


def markdown_filter(value, nl2br=False, p=True):
    """
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    Converts markdown into html.
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    nl2br: set to True to replace line breaks with <br> tags
    p: set to False to remove the enclosing <p></p> tags
    """
    from markdown import markdown
    from markdown.extensions.nl2br import Nl2BrExtension
    from markdown.extensions.abbr import AbbrExtension
    extensions = [AbbrExtension()]
    if nl2br is True:
        extensions.append(Nl2BrExtension())
    markdowned = markdown(value, output_format='html5', extensions=extensions)
    if p is False:
        markdowned = markdowned.replace(r"<p>", "").replace(r"</p>", "")
    return markdowned


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_js_escapes = {
        '\\': '\\u005C',
        '\'': '\\u0027',
        '"': '\\u0022',
        '>': '\\u003E',
        '<': '\\u003C',
        '&': '\\u0026',
        '=': '\\u003D',
        '-': '\\u002D',
        ';': '\\u003B',
        u'\u2028': '\\u2028',
        u'\u2029': '\\u2029'
}
# Escape every ASCII character with a value less than 32.
_js_escapes.update(('%c' % z, '\\u%04X' % z) for z in xrange(32))


def escapejs_filter(value):
    escaped = []
    for letter in value:
        if letter in _js_escapes:
            escaped.append(_js_escapes[letter])
        else:
            escaped.append(letter)

    return Markup("".join(escaped))

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tpl_engine = Environment(loader=FileSystemLoader([get_path('view')]),
                         trim_blocks=True,
                         lstrip_blocks=True)

tpl_engine.globals.update(
    url_for=url_for,
    static=static_global,
)

tpl_engine.filters['markdown'] = markdown_filter
tpl_engine.filters['md'] = markdown_filter
tpl_engine.filters['shuffle'] = shuffle_filter
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tpl_engine.filters['escapejs'] = escapejs_filter
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tpl_global_vars = {
    'request': request,
    'version': version,
    'config': config,
    'now': datetime.datetime.now(),
}


# HELPERS #####################################################################

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def abort(code, message):
    log.error(message)
    abort_flask(code, message)


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def render_view(view, context=None):
    """
    A simple helper to render [view] template with [context] vars.
    It automatically adds the global template vars defined above, too.
    It returns a string, usually the HTML contents to display.
    """
    context = {} if context is None else context
    return tpl_engine.get_template(view).render(
        dict(tpl_global_vars.items() + context.items())
    )


# def render_page(page, title="My Page", context=None):
#     """
#     A simple helper to render the md_page.html template with [context] vars &
#     the additional contents of `page/[page].md` in the `md_page` variable.
#     It automagically adds the global template vars defined above, too.
#     It returns a string, usually the HTML contents to display.
#     """
#     if context is None:
#         context = {}
#     context['title'] = title
#     context['md_page'] = ''
#     with file(get_path('page/%s.md' % page)) as f:
#         context['md_page'] = f.read()
#     return tpl_engine.get_template('md_page.html').render(
#         dict(tpl_global_vars.items() + context.items())
#     )

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def is_list_in_list(needle, haystack):
    for n in needle:
        if n not in haystack:
            return False
    return True


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def round_time(dt=None, round_to=60):
    """
    Round a datetime object to any time laps in seconds
    dt : datetime.datetime object, default now.
    roundTo : Closest number of seconds to round to, default 1 minute.
    """
    if dt is None:
        dt = datetime.datetime.now()
    seconds = (dt.replace(tzinfo=None) - dt.min).seconds
    rounding = (seconds + round_to / 2) // round_to * round_to
    return dt + datetime.timedelta(0, rounding-seconds, -dt.microsecond)


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def datetime_from_list(time_list):
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    """
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    Datetimes in retrieved CDFs are stored as lists of numbers,
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    with DayOfYear starting at 0. We want it starting at 1 because it's what
    vendor parsers use, both in python and javascript.
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    """
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    # Day Of Year starts at 0, but for our datetime parser it starts at 1
    doy = '{:03d}'.format(int(''.join(time_list[4:7])) + 1)
    return datetime.datetime.strptime(
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        "%s%s%s" % (''.join(time_list[0:4]), doy, ''.join(time_list[7:-1])),
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        "%Y%j%H%M%S%f"
    )
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def get_local_filename(url):
    """
    Build the local cache filename for the distant file
    :param url: string
    :return: string
    """
    from slugify import slugify
    n = len('http://')
    if url.startswith('https'):
        n += 1
    s = url[n:]
    return slugify(s)


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def get_target_config(slug):
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    for s in config['targets']:  # dumb
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        if s['slug'] == slug:
            return s
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    raise Exception("No target found in configuration for '%s'." % slug)
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def check_target_config(slug):
    get_target_config(slug)


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def get_active_targets():
    all_targets = config['targets']
    return [t for t in all_targets if not ('locked' in t and t['locked'])]


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def retrieve_amda_netcdf(orbiter, what, started_at, stopped_at):
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    """
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    Handles remote querying AMDA's API for URLs, and then downloading,
    extracting and caching the netCDF files.
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    :param orbiter: key of the source in the YAML config
    :param what: either 'model' or 'orbit', a key in the config of the source
    :param started_at:
    :param stopped_at:
    :return: a list of local file paths to netCDF (.nc) files
    """

    url = config['amda'].format(
        dataSet=what,
        startTime=started_at.isoformat(),
        stopTime=stopped_at.isoformat()
    )
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    log.info("Fetching remote gzip files list at '%s'." % url)
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    retries = 0
    success = False
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    errors = []
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    remote_gzip_files = []
    while not success and retries < 3:
        try:
            response = urllib.urlopen(url)
            remote_gzip_files = json.loads(response.read())
            if not remote_gzip_files:
                raise Exception("Failed to fetch data at '%s'." % url)
            if remote_gzip_files == 'NODATASET':
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                raise Exception("API says there's no dataset at '%s'." % url)
            if remote_gzip_files == 'ERROR':
                raise Exception("API returned an error at '%s'." % url)
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            if remote_gzip_files == ['OUTOFTIME']:  # it happens
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                return []
                # raise Exception("API says it's out of time at '%s'." % url)
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            success = True
        except Exception as e:
            log.warn("Failed (%d/3) '%s' : %s" % (retries+1, url, e.message))
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            remote_gzip_files = []
            errors.append(e)
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        finally:
            retries += 1
    if not remote_gzip_files:
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        log.error("Failed to fetch gzip files list for %s at '%s' : %s" %
                   (orbiter, url, errors))
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        abort(400, "Failed to fetch gzip files list for %s at '%s' : %s" %
                   (orbiter, url, errors))
    else:
        remote_gzip_files = list(set(remote_gzip_files))
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    log.debug("Fetched remote gzip files list : %s." % str(remote_gzip_files))
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    local_gzip_files = []
    for remote_gzip_file in remote_gzip_files:
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        # hotfixes to remove when fixed upstream @Myriam
        if remote_gzip_file in ['OUTOFTIME', 'ERROR']:
            continue  # sometimes half the response is okay, the other not
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        if remote_gzip_file.endswith('/.gz'):
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            continue  # this is just a plain bug
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        remote_gzip_file = remote_gzip_file.replace('cdpp1', 'cdpp', 1)
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        ################################################
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        local_gzip_file = join(CACHE_DIR, get_local_filename(remote_gzip_file))
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        local_gzip_files.append(local_gzip_file)
        if not isfile(local_gzip_file):
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            log.debug("Retrieving '%s'..." % local_gzip_file)
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            urllib.urlretrieve(remote_gzip_file, local_gzip_file)
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            log.debug("Retrieved '%s'." % local_gzip_file)
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        else:
            log.debug("Found '%s' in the cache." % local_gzip_file)
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    local_netc_files = []
    for local_gzip_file in local_gzip_files:
        local_netc_file = local_gzip_file[0:-3]
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        log.debug("Unzipping '%s'..." % local_gzip_file)
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        success = True
        try:
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            with gzip.open(local_gzip_file) as f:
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                file_content = f.read()
                with open(local_netc_file, 'w+b') as g:
                    g.write(file_content)
        except Exception as e:
            success = False
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            log.error("Cannot process gz file '%s' from '%s' : %s" %
                      (local_gzip_file, url, e))
            # Sometimes, the downloaded gz is corrupted, and CRC checks fail.
            # We want to delete the local gz file and try again next time.
            removefile(local_gzip_file)
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        if success:
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            local_netc_files.append(local_netc_file)
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            log.debug("Unzipped '%s'." % local_gzip_file)
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    return list(set(local_netc_files))  # remove possible dupes
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# class DataParser:
#     """
#     Default data parser
#     A wip to try to handle code exeptions sanely.
#     """
#
#     # Override these using the model configuration
#     default_nc_keys = {
#         'hee': 'HEE',
#         'vtot': 'V',
#         'magn': 'B',
#         'temp': 'T',
#         'dens': 'N',
#         'pdyn': 'P_dyn',
#         'atse': 'Delta_angle',
#     }
#
#     def __init__(self, target, model):
#         self.target = target
#         self.model = model
#         pass
#
#     def _read_var(self, nc, _keys, _key, mandatory=False):
#         try:
#             return nc.variables[_keys[_key]]
#         except KeyError:
#             pass
#         if mandatory:
#             raise Exception("No variable '%s' found in NetCDF." % _keys[_key])
#         return [None] * len(nc.variables['Time'])  # slow -- use numpy?
#
#     def parse(self, cdf_handle):
#         nc_keys = self.default_nc_keys.copy()
#
#         times = cdf_handle.variables['Time']  # YYYY DOY HH MM SS .ms
#         data_v = self._read_var(cdf_handle, nc_keys, 'vtot')
#         data_b = self._read_var(cdf_handle, nc_keys, 'magn')
#         data_t = self._read_var(cdf_handle, nc_keys, 'temp')
#         data_n = self._read_var(cdf_handle, nc_keys, 'dens')
#         data_p = self._read_var(cdf_handle, nc_keys, 'pdyn')
#         data_a = self._read_var(cdf_handle, nc_keys, 'atse')
#
#         return zip()


de97d643   Goutte   Fix more bugs.
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def get_data_for_target(target_config, input_slug,
                        started_at, stopped_at):
180d7d97   Goutte   Refactor heavily.
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    """
    :return: dict whose keys are datetime as str, values tuples of data
    """
    log.debug("Grabbing data for '%s'..." % target_config['slug'])
80352490   Goutte   Multi model suppo...
484

8644387c   Goutte   Use real data.
485
    try:
297a7dfc   Goutte   Add support for i...
486
        models = target_config['models'][input_slug]
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487
488
    except Exception as e:
        abort(500, "Invalid model configuration for '%s' : %s"
180d7d97   Goutte   Refactor heavily.
489
490
              % (target_config['slug'], str(e)))
    try:
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491
        orbits = target_config['orbit']['models']
d1c44c51   Goutte   Enable Earth
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    except KeyError as e:
        orbits = []
        # abort(500, "Invalid orbit configuration for '%s' : %s"
        #       % (target_config['slug'], str(e)))
28ef3790   Goutte   Clean up.
496

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    def _sta_sto(_cnf, _sta, _sto):
        if 'started_at' in _cnf:
            _s0 = datetime.datetime.strptime(_cnf['started_at'], FILE_DATE_FMT)
            _s0 = max(_s0, _sta)
        else:
            _s0 = _sta
        if 'stopped_at' in _cnf:
            _s1 = datetime.datetime.strptime(_cnf['stopped_at'], FILE_DATE_FMT)
            _s1 = min(_s1, _sto)
        else:
            _s1 = _sto
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508
        return _s0, _s1
80352490   Goutte   Multi model suppo...
509

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    def _read_var(_nc, _keys, _key, mandatory=False):
        try:
            return _nc.variables[_keys[_key]]
        except KeyError:
            pass
        if mandatory:
            raise Exception("No variable '%s' found in NetCDF." % _keys[_key])
        return [None] * len(_nc.variables['Time'])  # slow -- use numpy!

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519
    # Override these using the model configuration in config.yml
d1c44c51   Goutte   Enable Earth
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    default_nc_keys = {
        'hee': 'HEE',
        'vtot': 'V',
        'magn': 'B',
        'temp': 'T',
        'dens': 'N',
        'pdyn': 'P_dyn',
        'atse': 'Delta_angle',
    }

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    precision = "%Y-%m-%dT%H"  # model and orbits times are only equal-ish
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    orbit_data = {}  # keys are datetime as str, values arrays of XY
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    for orbit in orbits:
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        s0, s1 = _sta_sto(orbit, started_at, stopped_at)
ea6c8d5d   Goutte   Add interval cons...
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        nc_keys = default_nc_keys.copy()
        if 'parameters' in orbit:
            nc_keys.update(orbit['parameters'])

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        orbit_files = retrieve_amda_netcdf(
            target_config['slug'], orbit['slug'], s0, s1
        )
        for orbit_file in orbit_files:
            log.debug("%s: opening orbit NETCDF4 '%s'..." %
                      (target_config['name'], orbit_file))
            cdf_handle = Dataset(orbit_file, "r", format="NETCDF4")
            times = cdf_handle.variables['Time']  # YYYY DOY HH MM SS .ms
d1c44c51   Goutte   Enable Earth
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            data_hee = _read_var(cdf_handle, nc_keys, 'hee', mandatory=True)
ea6c8d5d   Goutte   Add interval cons...
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551

            log.debug("%s: aggregating data from '%s'..." %
                      (target_config['name'], orbit_file))
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            for ltime, datum_hee in zip(times, data_hee):
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                try:
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                    dtime = datetime_from_list(ltime)
                except Exception:
                    log.error("Failed to parse time from %s." % ltime)
                    raise
ea6c8d5d   Goutte   Add interval cons...
558
                if s0 <= dtime <= s1:
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559
                    dkey = round_time(dtime, 60*60).strftime(precision)
ea6c8d5d   Goutte   Add interval cons...
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                    orbit_data[dkey] = datum_hee
            cdf_handle.close()
180d7d97   Goutte   Refactor heavily.
562

8644387c   Goutte   Use real data.
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    all_data = {}  # keys are datetime as str, values tuples of data
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    for model in models:
        s0, s1 = _sta_sto(model, started_at, stopped_at)
        model_files = retrieve_amda_netcdf(
            target_config['slug'], model['slug'], s0, s1
        )
d1c44c51   Goutte   Enable Earth
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        nc_keys = default_nc_keys.copy()
        if 'parameters' in model:
            nc_keys.update(model['parameters'])

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        if len(model_files) == 0:
            log.warn("No model data for '%s' '%s'."
                     % (target_config['slug'], model['slug']))

58bfe281   Goutte   Handle start and ...
577
        for model_file in model_files:
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            log.debug("%s: opening model NETCDF4 '%s'..." %
                      (target_config['name'], model_file))
            cdf_handle = Dataset(model_file, "r", format="NETCDF4")
596da00d   Goutte   Add more exceptio...
581

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            # log.debug(cdf_handle.variables.keys())
596da00d   Goutte   Add more exceptio...
583

58bfe281   Goutte   Handle start and ...
584
            times = cdf_handle.variables['Time']  # YYYY DOY HH MM SS .ms
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            data_v = _read_var(cdf_handle, nc_keys, 'vtot')
            data_b = _read_var(cdf_handle, nc_keys, 'magn')
            data_t = _read_var(cdf_handle, nc_keys, 'temp')
            data_n = _read_var(cdf_handle, nc_keys, 'dens')
            data_p = _read_var(cdf_handle, nc_keys, 'pdyn')
            data_a = _read_var(cdf_handle, nc_keys, 'atse')

            # Usually:
            # Time, StartTime, StopTime, V, B, N, T, Delta_angle, P_dyn
            # Earth:
            # Time, BartelsNumber, ImfID, SwID, ImfPoints,
            # SwPoints, B_M_av, B_Vec_av, B_Theta_av,
            # B_Phi_av, B, T, N, V, Vlat, Vlon,
            # Alpha, RamP, E, Beta, Ma, Kp, R, DST,
            # AE, Flux, Flag, F10_Index, StartTime, StopTime

58bfe281   Goutte   Handle start and ...
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            log.debug("%s: aggregating data from '%s'..." %
                      (target_config['name'], model_file))
d1c44c51   Goutte   Enable Earth
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            for ltime, datum_v, datum_b, datum_t, datum_n, datum_p, datum_a \
                    in zip(times, data_v, data_b, data_t, data_n, data_p, data_a):

58bfe281   Goutte   Handle start and ...
606
                try:
d1c44c51   Goutte   Enable Earth
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                    dtime = datetime_from_list(ltime)
                except Exception:
                    log.error("Failed to parse time from %s." % ltime)
                    raise
596da00d   Goutte   Add more exceptio...
611

58bfe281   Goutte   Handle start and ...
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                if s0 <= dtime <= s1:
                    dkey = round_time(dtime, 60*60).strftime(precision)
d1c44c51   Goutte   Enable Earth
614

596da00d   Goutte   Add more exceptio...
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                    x_hee = None
                    y_hee = None
                    if dkey in orbit_data:
a2034dd9   Goutte   Convert from kilo...
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619
                        x_hee = orbit_data[dkey][0] / ASTRONOMICAL_UNIT_IN_KM
                        y_hee = orbit_data[dkey][1] / ASTRONOMICAL_UNIT_IN_KM
596da00d   Goutte   Add more exceptio...
620
621

                    # First exception: V may be a vector instead of a scalar
d1c44c51   Goutte   Enable Earth
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                    if hasattr(datum_v, '__len__'):
                        vrad = datum_v[0]
                        vtan = datum_v[1]
                        vtot = sqrt(vrad * vrad + vtan * vtan)
                    else:  # eg: Earth
                        vrad = None
                        vtan = None
                        vtot = datum_v

596da00d   Goutte   Add more exceptio...
631
                    # Second exception: Earth is always at (1, 0)
d1c44c51   Goutte   Enable Earth
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                    if target_config['slug'] == 'earth':
                        x_hee = 1
                        y_hee = 0
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                    # Third exception: B is a Vector3 or a Vector2 for Earth
                    if target_config['slug'] == 'earth':
                        if model['slug'] == 'omni_hour_all':  # Vector3
                            datum_b = datum_b[0]
                        # if model['slug'] == 'ace_swepam_real':  # Vector2
                        #     datum_b = datum_b[0]
                        if model['slug'] == 'omni_hour_all':
2c8f64ea   Goutte   Adjust Earth's dy...
643
                            datum_p = datum_n * vtot * vtot * 1.6726e-6
596da00d   Goutte   Add more exceptio...
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                        if model['slug'] == 'ace_swepam_real':
2c8f64ea   Goutte   Adjust Earth's dy...
645
                            datum_p = datum_n * vtot * vtot * 1.6726e-6
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                        if vtot is None or isnan(vtot):
                            continue

                    # Keep adding exceptions here until you can't or become mad

fd1829c3   Goutte   Use the new AMDA API
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                    # First model has priority: ignore data from other models
                    if dkey not in all_data:
                        # /!\ MUST be in the same order as PROPERTIES
                        all_data[dkey] = (
                            dtime.strftime("%Y-%m-%dT%H:%M:%S+00:00"),
                            vrad, vtan, vtot,
                            datum_b, datum_t, datum_p, datum_n, datum_a,
                            x_hee, y_hee
                        )
58bfe281   Goutte   Handle start and ...
660
            cdf_handle.close()
8644387c   Goutte   Use real data.
661

180d7d97   Goutte   Refactor heavily.
662
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664
    return all_data


297a7dfc   Goutte   Add support for i...
665
def generate_csv_contents(target_slug, input_slug, started_at, stopped_at):
180d7d97   Goutte   Refactor heavily.
666
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    target_config = get_target_config(target_slug)
    log.debug("Crunching CSV contents for '%s'..." % target_config['name'])
    si = StringIO.StringIO()
    cw = csv_writer(si)
    cw.writerow(PROPERTIES)

297a7dfc   Goutte   Add support for i...
672
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    all_data = get_data_for_target(
        target_config=target_config, input_slug=input_slug,
        started_at=started_at, stopped_at=stopped_at
    )
180d7d97   Goutte   Refactor heavily.
676
677

    log.debug("Writing and sorting CSV for '%s'..." % target_config['slug'])
8644387c   Goutte   Use real data.
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    for dkey in sorted(all_data):
        cw.writerow(all_data[dkey])
2d2af24b   Goutte   Add a basic orbit...
680

180d7d97   Goutte   Refactor heavily.
681
    log.info("Generated CSV contents for '%s'." % target_config['slug'])
2d2af24b   Goutte   Add a basic orbit...
682
683
    return si.getvalue()

8644387c   Goutte   Use real data.
684

de97d643   Goutte   Fix more bugs.
685
686
def generate_csv_file_if_needed(target_slug, input_slug,
                                started_at, stopped_at):
297a7dfc   Goutte   Add support for i...
687
688
689
    filename = "%s_%s_%s_%s.csv" % (target_slug, input_slug,
                                    started_at.strftime(FILE_DATE_FMT),
                                    stopped_at.strftime(FILE_DATE_FMT))
e18701b6   Goutte   Cache clear (remo...
690
    local_csv_file = join(CACHE_DIR, filename)
80352490   Goutte   Multi model suppo...
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    generate = True
    if isfile(local_csv_file):
297a7dfc   Goutte   Add support for i...
694
        # It needs to have more than one line to not be empty (headers)
80352490   Goutte   Multi model suppo...
695
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703
        with open(local_csv_file) as f:
            cnt = 0
            for _ in f:
                cnt += 1
                if cnt > 1:
                    generate = False
                    break

    if generate:
c0df94bc   Goutte   Adding more logs.
704
705
706
        log.info("Generating CSV '%s'..." % local_csv_file)
        try:
            with open(local_csv_file, mode="w+") as f:
de97d643   Goutte   Fix more bugs.
707
708
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710
                f.write(generate_csv_contents(
                    target_slug=target_slug, input_slug=input_slug,
                    started_at=started_at, stopped_at=stopped_at
                ))
c0df94bc   Goutte   Adding more logs.
711
712
            log.info("Generation of '%s' done." % filename)
        except Exception as e:
d1c44c51   Goutte   Enable Earth
713
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715
            from sys import exc_info
            from traceback import extract_tb
            exc_type, exc_value, exc_traceback = exc_info()
dc0be992   Goutte   Support having no...
716
            log.error(e)
d1c44c51   Goutte   Enable Earth
717
718
            for trace in extract_tb(exc_traceback):
                log.error(trace)
5ede388f   Goutte   Make sure failed ...
719
            if isfile(local_csv_file):
92abc15b   Goutte   Mistrust the API ...
720
                log.warn("Removing failed CSV '%s'..." % local_csv_file)
5ede388f   Goutte   Make sure failed ...
721
                removefile(local_csv_file)
9bfa6c42   Goutte   More bug hunting.
722
            abort(500, "Failed creating CSV '%s' : %s" % (filename, e))
c0df94bc   Goutte   Adding more logs.
723
724


e18701b6   Goutte   Cache clear (remo...
725
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747
def remove_all_files(in_directory):
    """
    Will throw if something horrible happens.
    Does not remove recursively (could be done with os.walk if needed).
    Does not remove directories either.
    :param in_directory: absolute path to directory
    :return:
    """
    import os

    if not os.path.isdir(in_directory):
        raise ValueError("No directory to clean at '%s'.")

    removed_files = []
    for file_name in os.listdir(in_directory):
        file_path = os.path.join(in_directory, file_name)
        if os.path.isfile(file_path):
            os.remove(file_path)
            removed_files.append(file_path)

    return removed_files


28bb4b28   Goutte   API for the cache...
748
749
def remove_files_created_before(date, in_directory):
    """
077980eb   Goutte   Improve availabil...
750
751
752
    Will throw if something horrible happens.
    Does not remove recursively (could be done with os.walk if needed).
    Does not remove directories either.
28bb4b28   Goutte   API for the cache...
753
    :param date: datetime object
077980eb   Goutte   Improve availabil...
754
    :param in_directory: absolute path to directory
28bb4b28   Goutte   API for the cache...
755
756
757
758
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761
    :return:
    """
    import os
    import time

    secs = time.mktime(date.timetuple())

077980eb   Goutte   Improve availabil...
762
763
    if not os.path.isdir(in_directory):
        raise ValueError("No directory to clean at '%s'.")
28bb4b28   Goutte   API for the cache...
764
765
766
767

    removed_files = []
    for file_name in os.listdir(in_directory):
        file_path = os.path.join(in_directory, file_name)
077980eb   Goutte   Improve availabil...
768
769
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771
772
        if os.path.isfile(file_path):
            t = os.stat(file_path)
            if t.st_ctime < secs:
                os.remove(file_path)
                removed_files.append(file_path)
28bb4b28   Goutte   API for the cache...
773
774
775
776

    return removed_files


297a7dfc   Goutte   Add support for i...
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def get_input_slug_from_query(inp=None):
    if inp is None:
        input_slug = request.args.get('input_slug', 'l1')
    else:
        input_slug = inp
de97d643   Goutte   Fix more bugs.
782
    if input_slug not in [i['slug'] for i in config['inputs']]:
297a7dfc   Goutte   Add support for i...
783
784
785
786
        input_slug = 'l1'  # be tolerant instead of yelling loudly
    return input_slug


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def get_interval_from_query():
    """
    Get the interval from the query, or from defaults.
    """
    before = relativedelta(months=2)
    after = relativedelta(months=1)
    today = datetime.datetime.now().replace(hour=0, minute=0, second=0)
    started_at = today - before
    stopped_at = today + after
    default_started_at = started_at.strftime(FILE_DATE_FMT)
    default_stopped_at = stopped_at.strftime(FILE_DATE_FMT)

    started_at = request.args.get('started_at', default_started_at)
    stopped_at = request.args.get('stopped_at', default_stopped_at)

    return started_at, stopped_at


0332f168   Goutte   Initial support f...
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806
def get_catalog_layers(input_slug, target_slug):
    """
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807
808
    In the JSON file we have "columns" and "data".
    Of course, each JSON file has its own columns, with different conventions.
0332f168   Goutte   Initial support f...
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810
811
812
813
    
    :param input_slug: 
    :param target_slug: 
    :return: 
    """
0332f168   Goutte   Initial support f...
814
    import json
2204c3f7   Goutte   Improve layers co...
815
816

    def _get_index_of_key(_data, _key):
2204c3f7   Goutte   Improve layers co...
817
818
819
820
821
822
823
        try:
            index = _data['columns'].index(_key)
        except ValueError:
            log.error("Key %s not found in columns of %s" % (_key, _data))
            raise
        return index

0332f168   Goutte   Initial support f...
824
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    catalog_layers = {}
    for config_layer in config['layers']:
        if 'data' not in config_layer:
            continue
0332f168   Goutte   Initial support f...
828
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        catalog_layers[config_layer['slug']] = []
        for cl_datum in config_layer['data']:
            if input_slug not in cl_datum:
                continue
            if target_slug not in cl_datum[input_slug]:
                continue
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834
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            if cl_datum[input_slug][target_slug] is None:
                # We used ~ in the config, there are no constraints
                constraints = []
            else:
                constraints = cl_datum[input_slug][target_slug]['constraints']
0332f168   Goutte   Initial support f...
839
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            with open(get_path("../data/catalog/%s" % cl_datum['file'])) as f:
                json_data = json.load(f)
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841
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844
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848
                if 'start' not in cl_datum:
                    log.error("Invalid configuration: 'start' is missing.")
                    continue  # skip this
                start_index = _get_index_of_key(json_data, cl_datum['start'])
                if 'stop' not in cl_datum:
                    stop_index = start_index
                else:
                    stop_index = _get_index_of_key(json_data, cl_datum['stop'])
2204c3f7   Goutte   Improve layers co...
849

0332f168   Goutte   Initial support f...
850
                for json_datum in json_data['data']:
2204c3f7   Goutte   Improve layers co...
851
                    validates_any_constraint = False
b03d5eb1   Goutte   Add the last CME ...
852
853
                    if 0 == len(constraints):
                        validates_any_constraint = True
2204c3f7   Goutte   Improve layers co...
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860
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862
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864
865
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                    for constraint in constraints:
                        validates_constraint = True
                        for key, possible_values in constraint.iteritems():
                            actual_value = json_datum[_get_index_of_key(
                                json_data, key
                            )]
                            if actual_value not in possible_values:
                                validates_constraint = False
                                break
                        if validates_constraint:
                            validates_any_constraint = True
                            break
                    if not validates_any_constraint:
0332f168   Goutte   Initial support f...
867
                        continue
284f4688   Goutte   Continue layers i...
868
869
                    start_time = json_datum[start_index]
                    stop_time = json_datum[stop_index]
0332f168   Goutte   Initial support f...
870
                    catalog_layers[config_layer['slug']].append({
284f4688   Goutte   Continue layers i...
871
872
                        'start': start_time,
                        'stop':  stop_time,
0332f168   Goutte   Initial support f...
873
                    })
0332f168   Goutte   Initial support f...
874
875
876
877

    return catalog_layers


077980eb   Goutte   Improve availabil...
878
879
880
881
882
883
884
885
886
887
888
def get_hit_counter():
    hit_count_path = get_path("../VISITS")

    if isfile(hit_count_path):
        hit_count = int(open(hit_count_path).read())
    else:
        hit_count = 1

    return hit_count


a4a9ef03   Goutte   Cache generated C...
889
890
891
892
893
894
895
896
897
898
899
900
901
902
903
904
def increment_hit_counter():
    hit_count_path = get_path("../VISITS")

    if isfile(hit_count_path):
        hit_count = int(open(hit_count_path).read())
        hit_count += 1
    else:
        hit_count = 1

    hit_counter_file = open(hit_count_path, 'w')
    hit_counter_file.write(str(hit_count))
    hit_counter_file.close()

    return hit_count


4aaf6874   Goutte   Try fixing the ge...
905
906
907
908
def update_spacepy():
    """
    Importing pydcf will fail if the toolbox is not up to date.
    """
4aaf6874   Goutte   Try fixing the ge...
909
910
911
912
913
914
915
916
917
    try:
        log.info("Updating spacepy's toolbox…")
        import spacepy.toolbox

        spacepy.toolbox.update()
    except Exception as e:
        log.error("Failed to update spacepy : %s." % e)


077980eb   Goutte   Improve availabil...
918
919
920
tpl_global_vars['visits'] = get_hit_counter()


a4a9ef03   Goutte   Cache generated C...
921
922
923
# ROUTING #####################################################################

@app.route('/favicon.ico')
bde97e4d   Goutte   Add more changes ...
924
def favicon():  # we want it served from the root, not from static/
a4a9ef03   Goutte   Cache generated C...
925
926
927
928
929
930
931
932
933
934
    return send_from_directory(
        join(app.root_path, 'static', 'img'),
        'favicon.ico', mimetype='image/vnd.microsoft.icon'
    )


@app.route("/")
@app.route("/home.html")
@app.route("/index.html")
def home():
077980eb   Goutte   Improve availabil...
935
    increment_hit_counter()
bde97e4d   Goutte   Add more changes ...
936
937
    parameters = PARAMETERS.values()
    parameters.sort(key=lambda x: x['position'])
297a7dfc   Goutte   Add support for i...
938
    input_slug = get_input_slug_from_query()
0332f168   Goutte   Initial support f...
939
    targets = [t for t in config['targets'] if not t['locked']]
284f4688   Goutte   Continue layers i...
940
    started_at, stopped_at = get_interval_from_query()
0332f168   Goutte   Initial support f...
941
942
943
944
    for i, target in enumerate(targets):
        targets[i]['catalog_layers'] = get_catalog_layers(
            input_slug, target['slug']
        )
a4a9ef03   Goutte   Cache generated C...
945
    return render_view('home.html.jinja2', {
0332f168   Goutte   Initial support f...
946
947
        # 'targets': config['targets'],
        'targets': targets,
bde97e4d   Goutte   Add more changes ...
948
        'parameters': parameters,
297a7dfc   Goutte   Add support for i...
949
        'input_slug': input_slug,
284f4688   Goutte   Continue layers i...
950
951
        'started_at': started_at,
        'stopped_at': stopped_at,
a4a9ef03   Goutte   Cache generated C...
952
953
954
        'planets': [s for s in config['targets'] if s['type'] == 'planet'],
        'probes':  [s for s in config['targets'] if s['type'] == 'probe'],
        'comets':  [s for s in config['targets'] if s['type'] == 'comet'],
077980eb   Goutte   Improve availabil...
955
        'visits':  get_hit_counter(),
a4a9ef03   Goutte   Cache generated C...
956
957
958
    })


297a7dfc   Goutte   Add support for i...
959
960
@app.route("/<target>_<inp>_<started_at>_<stopped_at>.csv")
def download_target_csv(target, inp, started_at, stopped_at):
a4a9ef03   Goutte   Cache generated C...
961
962
963
964
    """
    Grab data and orbit data for the specified `target`,
    rearrange it and return it as a CSV file.
    `started_at` and `stopped_at` should be UTC.
297a7dfc   Goutte   Add support for i...
965
    `inp` is the input slug, l1 or sa or sb.
a4a9ef03   Goutte   Cache generated C...
966
    """
180d7d97   Goutte   Refactor heavily.
967
    check_target_config(target)
a4a9ef03   Goutte   Cache generated C...
968
    try:
c0df94bc   Goutte   Adding more logs.
969
        started_at = datetime.datetime.strptime(started_at, FILE_DATE_FMT)
a4a9ef03   Goutte   Cache generated C...
970
971
972
    except:
        abort(400, "Invalid started_at parameter : '%s'." % started_at)
    try:
c0df94bc   Goutte   Adding more logs.
973
        stopped_at = datetime.datetime.strptime(stopped_at, FILE_DATE_FMT)
a4a9ef03   Goutte   Cache generated C...
974
975
    except:
        abort(400, "Invalid stopped_at parameter : '%s'." % stopped_at)
297a7dfc   Goutte   Add support for i...
976
    input_slug = get_input_slug_from_query(inp=inp)
a4a9ef03   Goutte   Cache generated C...
977

297a7dfc   Goutte   Add support for i...
978
979
980
    filename = "%s_%s_%s_%s.csv" % (target, input_slug,
                                    started_at.strftime(FILE_DATE_FMT),
                                    stopped_at.strftime(FILE_DATE_FMT))
e18701b6   Goutte   Cache clear (remo...
981
    local_csv_file = join(CACHE_DIR, filename)
297a7dfc   Goutte   Add support for i...
982
983
984
985
    generate_csv_file_if_needed(
        target_slug=target, input_slug=input_slug,
        started_at=started_at, stopped_at=stopped_at
    )
a4a9ef03   Goutte   Cache generated C...
986
987
988
    if not isfile(local_csv_file):
        abort(500, "Could not cache CSV file at '%s'." % local_csv_file)

e18701b6   Goutte   Cache clear (remo...
989
    return send_from_directory(CACHE_DIR, filename)
a4a9ef03   Goutte   Cache generated C...
990
991


297a7dfc   Goutte   Add support for i...
992
993
@app.route("/<targets>_<inp>_<started_at>_<stopped_at>.tar.gz")
def download_targets_tarball(targets, inp, started_at, stopped_at):
b2837a08   Goutte   Add three retries...
994
    """
bc18b96c   Goutte   Implement first (...
995
996
997
    Grab data and orbit data for each of the specified `targets`,
    in their own CSV file, and make a tarball of them.
    `started_at` and `stopped_at` should be UTC strings.
b2837a08   Goutte   Add three retries...
998

ea6c8d5d   Goutte   Add interval cons...
999
1000
    Note: we do not use this route anymore, but let's keep it shelved for now.

2fedd73b   Goutte   Initial implement...
1001
    targets: string list of targets' slugs, separated by `-`.
b2837a08   Goutte   Add three retries...
1002
    """
2fedd73b   Goutte   Initial implement...
1003
    separator = '-'
0511eed7   Goutte   Tarball generatio...
1004
1005
    targets = targets.split(separator)
    targets.sort()
2fedd73b   Goutte   Initial implement...
1006
1007
    targets_configs = []
    for target in targets:
b2837a08   Goutte   Add three retries...
1008
1009
        if not target:
            abort(400, "Invalid targets format : `%s`." % targets)
180d7d97   Goutte   Refactor heavily.
1010
        targets_configs.append(get_target_config(target))
2fedd73b   Goutte   Initial implement...
1011
    if 0 == len(targets_configs):
b2837a08   Goutte   Add three retries...
1012
1013
        abort(400, "No valid targets specified. What are you doing?")

b2837a08   Goutte   Add three retries...
1014
    try:
ea6c8d5d   Goutte   Add interval cons...
1015
        started_at = datetime.datetime.strptime(started_at, FILE_DATE_FMT)
b2837a08   Goutte   Add three retries...
1016
1017
1018
    except:
        abort(400, "Invalid started_at parameter : '%s'." % started_at)
    try:
ea6c8d5d   Goutte   Add interval cons...
1019
        stopped_at = datetime.datetime.strptime(stopped_at, FILE_DATE_FMT)
b2837a08   Goutte   Add three retries...
1020
1021
    except:
        abort(400, "Invalid stopped_at parameter : '%s'." % stopped_at)
ea6c8d5d   Goutte   Add interval cons...
1022
1023
    sta = started_at.strftime(FILE_DATE_FMT)
    sto = stopped_at.strftime(FILE_DATE_FMT)
b2837a08   Goutte   Add three retries...
1024

297a7dfc   Goutte   Add support for i...
1025
1026
1027
1028
1029
    input_slug = get_input_slug_from_query(inp=inp)

    gzip_filename = "%s_%s_%s_%s.tar.gz" % (
        separator.join(targets), input_slug, sta, sto
    )
e18701b6   Goutte   Cache clear (remo...
1030
    local_gzip_file = join(CACHE_DIR, gzip_filename)
2fedd73b   Goutte   Initial implement...
1031
1032

    if not isfile(local_gzip_file):
0511eed7   Goutte   Tarball generatio...
1033
        log.debug("Creating the CSV files for the tarball...")
2fedd73b   Goutte   Initial implement...
1034
        for target_config in targets_configs:
297a7dfc   Goutte   Add support for i...
1035
1036
1037
            filename = "%s_%s_%s_%s.csv" % (
                target_config['slug'], input_slug, sta, sto
            )
e18701b6   Goutte   Cache clear (remo...
1038
            local_csv_file = join(CACHE_DIR, filename)
2fedd73b   Goutte   Initial implement...
1039
1040
            if not isfile(local_csv_file):
                with open(local_csv_file, mode="w+") as f:
297a7dfc   Goutte   Add support for i...
1041
1042
1043
1044
1045
1046
                    f.write(generate_csv_contents(
                        target_slug=target_config['slug'],
                        started_at=started_at,
                        stopped_at=stopped_at,
                        input_slug=input_slug
                    ))
2fedd73b   Goutte   Initial implement...
1047

0511eed7   Goutte   Tarball generatio...
1048
        log.debug("Creating the tarball '%s'..." % local_gzip_file)
2fedd73b   Goutte   Initial implement...
1049
1050
        with tarfile.open(local_gzip_file, "w:gz") as tar:
            for target_config in targets_configs:
297a7dfc   Goutte   Add support for i...
1051
1052
1053
                filename = "%s_%s_%s_%s.csv" % (
                    target_config['slug'], input_slug, sta, sto
                )
e18701b6   Goutte   Cache clear (remo...
1054
                local_csv_file = join(CACHE_DIR, filename)
2fedd73b   Goutte   Initial implement...
1055
1056
1057
                tar.add(local_csv_file, arcname=filename)

    if not isfile(local_gzip_file):
0511eed7   Goutte   Tarball generatio...
1058
        abort(500, "No tarball to serve. Looked at '%s'." % local_gzip_file)
2fedd73b   Goutte   Initial implement...
1059

e18701b6   Goutte   Cache clear (remo...
1060
    return send_from_directory(CACHE_DIR, gzip_filename)
b2837a08   Goutte   Add three retries...
1061

28bb4b28   Goutte   API for the cache...
1062

297a7dfc   Goutte   Add support for i...
1063
1064
@app.route("/<targets>_<inp>_<params>_<started_at>_<stopped_at>.nc")
def download_targets_netcdf(targets, inp, params, started_at, stopped_at):
bc18b96c   Goutte   Implement first (...
1065
    """
4aaf6874   Goutte   Try fixing the ge...
1066
1067
    NOTE : This is not used anymore.
    
bc18b96c   Goutte   Implement first (...
1068
    Grab data and orbit data for the specified `target`,
aa7247d6   Goutte   Generate a CDF fi...
1069
    rearrange it and return it as a NetCDF file.
e18701b6   Goutte   Cache clear (remo...
1070
    `started_at` and `stopped_at` are expected to be UTC.
bc18b96c   Goutte   Implement first (...
1071
1072
1073
1074

    targets: string list of targets' slugs, separated by `-`.
    params: string list of targets' parameters, separated by `-`.
    """
e18701b6   Goutte   Cache clear (remo...
1075
    separator = '-'  # /!\ this char should never be in target's slugs
bc18b96c   Goutte   Implement first (...
1076
1077
1078
1079
1080
1081
1082
1083
1084
    targets = targets.split(separator)
    targets.sort()
    targets_configs = []
    for target in targets:
        if not target:
            abort(400, "Invalid targets format : `%s`." % targets)
        targets_configs.append(get_target_config(target))
    if 0 == len(targets_configs):
        abort(400, "No valid targets specified. What are you doing?")
4aaf6874   Goutte   Try fixing the ge...
1085

bc18b96c   Goutte   Implement first (...
1086
1087
1088
1089
1090
1091
1092
    params = params.split(separator)
    params.sort()
    if 0 == len(params):
        abort(400, "No valid parameters specified. What are you doing?")
    if not is_list_in_list(params, PARAMETERS.keys()):
        abort(400, "Some parameters are not recognized in '%s'." % str(params))

57493104   Goutte   Add the time to t...
1093
    date_fmt = FILE_DATE_FMT
bc18b96c   Goutte   Implement first (...
1094
1095
1096
1097
1098
1099
1100
1101
1102
1103
1104
    try:
        started_at = datetime.datetime.strptime(started_at, date_fmt)
    except:
        abort(400, "Invalid started_at parameter : '%s'." % started_at)
    try:
        stopped_at = datetime.datetime.strptime(stopped_at, date_fmt)
    except:
        abort(400, "Invalid stopped_at parameter : '%s'." % stopped_at)
    sta = started_at.strftime(date_fmt)
    sto = stopped_at.strftime(date_fmt)

297a7dfc   Goutte   Add support for i...
1105
1106
1107
1108
1109
    input_slug = get_input_slug_from_query(inp=inp)

    nc_filename = "%s_%s_%s_%s_%s.nc" % (
        separator.join(targets), separator.join(params), input_slug, sta, sto
    )
e18701b6   Goutte   Cache clear (remo...
1110
    nc_path = join(CACHE_DIR, nc_filename)
bc18b96c   Goutte   Implement first (...
1111
1112
1113
1114
1115

    if not isfile(nc_path):
        log.debug("Creating the NetCDF file '%s'..." % nc_filename)
        nc_handle = Dataset(nc_path, "w", format="NETCDF4")
        try:
ea6c8d5d   Goutte   Add interval cons...
1116
            nc_handle.description = "Model and orbit data for targets"  # todo
bc18b96c   Goutte   Implement first (...
1117
            nc_handle.history = "Created " + time.ctime(time.time())
ea6c8d5d   Goutte   Add interval cons...
1118
            nc_handle.source = "Heliopropa (CDDP)"
bc18b96c   Goutte   Implement first (...
1119
1120
1121
1122
1123
            available_params = list(PROPERTIES)
            for target in targets_configs:
                target_slug = target['slug']
                log.debug("Adding group '%s' to the NetCDF..." % target_slug)
                nc_group = nc_handle.createGroup(target_slug)
297a7dfc   Goutte   Add support for i...
1124
1125
1126
1127
                data = get_data_for_target(
                    target_config=target, input_slug=input_slug,
                    started_at=started_at, stopped_at=stopped_at
                )
bc18b96c   Goutte   Implement first (...
1128
                dkeys = sorted(data)
ceeb2f4a   Goutte   Add the target co...
1129
1130
                dimension = 'dim_'+target_slug
                nc_handle.createDimension(dimension, len(dkeys))
57493104   Goutte   Add the time to t...
1131
1132

                # TIME #
ceeb2f4a   Goutte   Add the target co...
1133
                nc_time = nc_group.createVariable('time', 'i8', (dimension,))
57493104   Goutte   Add the time to t...
1134
1135
1136
1137
1138
1139
1140
1141
1142
1143
1144
1145
                nc_time.units = "hours since 1970-01-01 00:00:00"
                nc_time.calendar = "standard"
                times = []
                for dkey in dkeys:
                    time_as_string = data[dkey][0][:-6]  # remove +00:00 tail
                    date = datetime.datetime.strptime(time_as_string, date_fmt)
                    times.append(date2num(
                        date, units=nc_time.units, calendar=nc_time.calendar
                    ))
                nc_time[:] = times

                # SELECTED PARAMETERS #
bc18b96c   Goutte   Implement first (...
1146
1147
1148
1149
                nc_vars = []
                indices = []
                for param in params:
                    indices.append(available_params.index(param))
ceeb2f4a   Goutte   Add the target co...
1150
                    nc_var = nc_group.createVariable(param, 'f8', (dimension,))
5a6d4498   Goutte   Add a title to ea...
1151
                    nc_var.units = PARAMETERS[param]['units']
bc18b96c   Goutte   Implement first (...
1152
1153
1154
1155
1156
1157
1158
1159
                    nc_vars.append(nc_var)
                for i, nc_var in enumerate(nc_vars):
                    index = indices[i]
                    values = []
                    for dkey in dkeys:
                        dval = data[dkey]
                        values.append(dval[index])
                    nc_var[:] = values
ceeb2f4a   Goutte   Add the target co...
1160
1161

                # ORBIT #
6491a1f1   Goutte   Fix up the bugs l...
1162
                nc_x = nc_group.createVariable('xhee', 'f8', (dimension,))
ceeb2f4a   Goutte   Add the target co...
1163
                nc_x.units = 'Au'
6491a1f1   Goutte   Fix up the bugs l...
1164
                nc_y = nc_group.createVariable('yhee', 'f8', (dimension,))
ceeb2f4a   Goutte   Add the target co...
1165
1166
1167
                nc_y.units = 'Au'
                values_x = []
                values_y = []
6491a1f1   Goutte   Fix up the bugs l...
1168
1169
                index_x = available_params.index('xhee')
                index_y = available_params.index('yhee')
ceeb2f4a   Goutte   Add the target co...
1170
1171
1172
1173
1174
1175
1176
1177
                for dkey in dkeys:
                    dval = data[dkey]
                    values_x.append(dval[index_x])
                    values_y.append(dval[index_y])
                nc_x[:] = values_x
                nc_y[:] = values_y
            log.debug("Writing NetCDF '%s'..." % nc_filename)

d1c44c51   Goutte   Enable Earth
1178
        except Exception:
57493104   Goutte   Add the time to t...
1179
            log.error("Failed to generate NetCDF '%s'." % nc_filename)
d1c44c51   Goutte   Enable Earth
1180
            raise
bc18b96c   Goutte   Implement first (...
1181
1182
1183
1184
1185
1186
        finally:
            nc_handle.close()

    if not isfile(nc_path):
        abort(500, "No NetCDF to serve. Looked at '%s'." % nc_path)

e18701b6   Goutte   Cache clear (remo...
1187
    return send_from_directory(CACHE_DIR, nc_filename)
bc18b96c   Goutte   Implement first (...
1188
1189


297a7dfc   Goutte   Add support for i...
1190
1191
@app.route("/<targets>_<inp>_<started_at>_<stopped_at>.cdf")
def download_targets_cdf(targets, inp, started_at, stopped_at):
aa7247d6   Goutte   Generate a CDF fi...
1192
1193
1194
1195
1196
1197
1198
1199
1200
1201
1202
1203
1204
1205
1206
1207
1208
1209
1210
1211
    """
    Grab data and orbit data for the specified `target`,
    rearrange it and return it as a CDF file.
    `started_at` and `stopped_at` are expected to be UTC.

    targets: string list of targets' slugs, separated by `-`.
    params: string list of targets' parameters, separated by `-`.
    """
    separator = '-'  # /!\ this char should never be in target's slugs
    targets = targets.split(separator)
    targets.sort()
    targets_configs = []
    for target in targets:
        if not target:
            abort(400, "Invalid targets format : `%s`." % targets)
        targets_configs.append(get_target_config(target))
    if 0 == len(targets_configs):
        abort(400, "No valid targets specified. What are you doing?")

    params = PARAMETERS.keys()
aa7247d6   Goutte   Generate a CDF fi...
1212
1213
1214
1215
1216
1217
1218
1219
1220
1221
1222
1223

    try:
        started_at = datetime.datetime.strptime(started_at, FILE_DATE_FMT)
    except:
        abort(400, "Invalid started_at parameter : '%s'." % started_at)
    try:
        stopped_at = datetime.datetime.strptime(stopped_at, FILE_DATE_FMT)
    except:
        abort(400, "Invalid stopped_at parameter : '%s'." % stopped_at)
    sta = started_at.strftime(FILE_DATE_FMT)
    sto = stopped_at.strftime(FILE_DATE_FMT)

297a7dfc   Goutte   Add support for i...
1224
1225
1226
1227
1228
    input_slug = get_input_slug_from_query(inp=inp)

    cdf_filename = "%s_%s_%s_%s.cdf" % (
        separator.join(targets), input_slug, sta, sto
    )
aa7247d6   Goutte   Generate a CDF fi...
1229
1230
1231
1232
    cdf_path = join(CACHE_DIR, cdf_filename)

    if not isfile(cdf_path):
        log.debug("Creating the CDF file '%s'..." % cdf_filename)
604616e4   Goutte   Misc changes from...
1233
        try:
8a48d5fa   Goutte   Make sure spacepy...
1234
            from spacepy import pycdf
4aaf6874   Goutte   Try fixing the ge...
1235
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1242
1243
        except ImportError:
            # If spacepy's toolbox is not up-to-date, importing will fail.
            # So, let's update and try again !
            update_spacepy()
            try:
                from spacepy import pycdf
            except ImportError as e:
                log.error("Failed to import pycdf from spacepy : %s" % e)
                raise
2fe06b17   Goutte   Move the ENV dire...
1244
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1246
        except Exception as e:
            log.error("Failed to import pycdf from spacepy : %s" % e)
            raise
4aaf6874   Goutte   Try fixing the ge...
1247

8a48d5fa   Goutte   Make sure spacepy...
1248
        try:
952e3d8f   Goutte   Move to another s...
1249
            cdf_handle = pycdf.CDF(cdf_path, masterpath='')
aa7247d6   Goutte   Generate a CDF fi...
1250
1251
            description = "Model and orbit data for %s." % \
                ', '.join([t['name'] for t in targets_configs])
952e3d8f   Goutte   Move to another s...
1252
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            cdf_handle.attrs['Description'] = description
            cdf_handle.attrs['Author'] = "Heliopropa.irap.omp.eu (CDPP)"
            cdf_handle.attrs['Created'] = str(time.ctime(time.time()))
aa7247d6   Goutte   Generate a CDF fi...
1255
1256
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1258

            available_params = list(PROPERTIES)
            for target in targets_configs:
                target_slug = target['slug']
297a7dfc   Goutte   Add support for i...
1259
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                data = get_data_for_target(
                    target_config=target, input_slug=input_slug,
                    started_at=started_at, stopped_at=stopped_at
                )
aa7247d6   Goutte   Generate a CDF fi...
1263
1264
1265
                dkeys = sorted(data)

                values = []
aa7247d6   Goutte   Generate a CDF fi...
1266
                for dkey in dkeys:
952e3d8f   Goutte   Move to another s...
1267
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1270
                    time_str = data[dkey][0][:-6]  # remove +00:00 tail
                    date = datetime.datetime.strptime(time_str, FILE_DATE_FMT)
                    values.append(date)
                kt = "%s_time" % target_slug
4aaf6874   Goutte   Try fixing the ge...
1271
                cdf_handle.new(kt, type=pycdf.const.CDF_EPOCH)
952e3d8f   Goutte   Move to another s...
1272
                cdf_handle[kt] = values
4aaf6874   Goutte   Try fixing the ge...
1273
                # cdf_handle[kt].attrs['FIELDNAM'] = "Time since 0 A.D"
aa7247d6   Goutte   Generate a CDF fi...
1274
1275
1276

                for param in params:
                    k = "%s_%s" % (target_slug, param)
4aaf6874   Goutte   Try fixing the ge...
1277
                    # print("PARAM %s" % k)
aa7247d6   Goutte   Generate a CDF fi...
1278
1279
                    values = []
                    i = available_params.index(param)
4aaf6874   Goutte   Try fixing the ge...
1280
                    has_nones = False
aa7247d6   Goutte   Generate a CDF fi...
1281
                    for dkey in dkeys:
4aaf6874   Goutte   Try fixing the ge...
1282
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                        value = data[dkey][i]
                        if value is None:
                            has_nones = True
                        values.append(value)
                    if has_nones:
                        # PyCDF hates it when there are Nones.
                        # Since we don't know what value to set instead,
                        # let's skip the param altogether.
                        continue
aa7247d6   Goutte   Generate a CDF fi...
1291
                    cdf_handle[k] = values
952e3d8f   Goutte   Move to another s...
1292
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1300
1301
                    attrs = cdf_handle[k].attrs
                    attrs['UNITS'] = PARAMETERS[param]['units']
                    attrs['LABLAXIS'] = PARAMETERS[param]['name']
                    attrs['FIELDNAM'] = PARAMETERS[param]['title']
                    if values:
                        attrs['VALIDMIN'] = min(values)
                        attrs['VALIDMAX'] = max(values)

                kx = "%s_xhee" % target_slug
                ky = "%s_yhee" % target_slug
aa7247d6   Goutte   Generate a CDF fi...
1302
1303
1304
1305
1306
                values_xhee = []
                values_yhee = []
                index_x = available_params.index('xhee')
                index_y = available_params.index('yhee')
                for dkey in dkeys:
391d581c   Goutte   Make the CDF down...
1307
1308
1309
                    value_xhee = data[dkey][index_x]
                    value_yhee = data[dkey][index_y]
                    # We've got some `None`s cropping up in the data sometimes.
4aaf6874   Goutte   Try fixing the ge...
1310
                    # PyCDF does not digest Nones at all.
391d581c   Goutte   Make the CDF down...
1311
1312
1313
1314
1315
                    # While they solve this upstream, let's make an ugly fix!
                    if (value_xhee is not None) and (value_yhee is not None):
                        values_xhee.append(value_xhee)
                        values_yhee.append(value_yhee)
                    else:
4aaf6874   Goutte   Try fixing the ge...
1316
1317
                        values_xhee.append(0)
                        values_yhee.append(0)
391d581c   Goutte   Make the CDF down...
1318
                        log.warn("Orbit data for %s has NaNs." % target_slug)
952e3d8f   Goutte   Move to another s...
1319
1320
1321
1322
                cdf_handle[kx] = values_xhee
                cdf_handle[ky] = values_yhee
                cdf_handle[kx].attrs['UNITS'] = 'Au'
                cdf_handle[ky].attrs['UNITS'] = 'Au'
aa7247d6   Goutte   Generate a CDF fi...
1323
1324

            log.debug("Writing CDF '%s'..." % cdf_filename)
952e3d8f   Goutte   Move to another s...
1325
1326
            cdf_handle.close()
            log.debug("Wrote CDF '%s'." % cdf_filename)
aa7247d6   Goutte   Generate a CDF fi...
1327
1328
1329

        except Exception as e:
            log.error("Failed to generate CDF '%s'." % cdf_filename)
952e3d8f   Goutte   Move to another s...
1330
1331
            if isfile(cdf_path):
                removefile(cdf_path)
aa7247d6   Goutte   Generate a CDF fi...
1332
1333
            raise

aa7247d6   Goutte   Generate a CDF fi...
1334
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1337
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1339
    if not isfile(cdf_path):
        abort(500, "No CDF to serve. Looked at '%s'." % cdf_path)

    return send_from_directory(CACHE_DIR, cdf_filename)


28bb4b28   Goutte   API for the cache...
1340
1341
# API #########################################################################

e18701b6   Goutte   Cache clear (remo...
1342
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@app.route("/cache/clear")
def cache_clear():
    """
    Removes all files from the cache.
    Note: It also removes the .gitkeep file. Not a problem for prod.
    """
    removed_files = remove_all_files(CACHE_DIR)
    count = len(removed_files)
    return "Cache cleared! Removed %d file%s." \
           % (count, 's' if count != 1 else '')


d9710a98   Goutte   Rename the cleanu...
1354
1355
@app.route("/cache/cleanup")
def cache_cleanup():
28bb4b28   Goutte   API for the cache...
1356
1357
    """
    Removes all files from the cache that are older than roughly one month.
e18701b6   Goutte   Cache clear (remo...
1358
    Note: It also removes the .gitkeep file. Maybe it should not, but hey.
28bb4b28   Goutte   API for the cache...
1359
1360
    """
    a_month_ago = datetime.datetime.now() - datetime.timedelta(days=32)
e18701b6   Goutte   Cache clear (remo...
1361
    removed_files = remove_files_created_before(a_month_ago, CACHE_DIR)
d9710a98   Goutte   Rename the cleanu...
1362
1363
1364
    count = len(removed_files)
    return "Cache cleaned! Removed %d old file%s." \
           % (count, 's' if count != 1 else '')
28bb4b28   Goutte   API for the cache...
1365
1366


b500e561   Goutte   Invert the orbits...
1367
1368
1369
1370
@app.route("/cache/warmup")
def cache_warmup():
    """
    Warms up the cache for the current day.
b500e561   Goutte   Invert the orbits...
1371
    """
390a3587   Goutte   Add a CRON config...
1372
    warmup_started_at = datetime.datetime.now()
284f4688   Goutte   Continue layers i...
1373
    sta, sto = get_interval_from_query()
297a7dfc   Goutte   Add support for i...
1374
    inp = 'l1'  # default input, maybe warm them all up ?
fb383448   Goutte   Implement the cac...
1375
1376

    targets = get_active_targets()
fb383448   Goutte   Implement the cac...
1377
1378
    targets_slugs = [target['slug'] for target in targets]
    targets_slugs.sort()
4aaf6874   Goutte   Try fixing the ge...
1379
1380
1381
1382

    update_spacepy()
    for target in targets:
        download_target_csv(target['slug'], inp, sta, sto)
297a7dfc   Goutte   Add support for i...
1383
    download_targets_cdf('-'.join(targets_slugs), inp, sta, sto)
fb383448   Goutte   Implement the cac...
1384

390a3587   Goutte   Add a CRON config...
1385
1386
1387
1388
    warmup_ended_at = datetime.datetime.now()
    warmup_timedelta = warmup_ended_at - warmup_started_at

    return "Done in %s." % str(warmup_timedelta)
b500e561   Goutte   Invert the orbits...
1389
1390


1324cc91   Goutte   Make the footer i...
1391
@app.route("/log")
596da00d   Goutte   Add more exceptio...
1392
@app.route("/log.html")
1324cc91   Goutte   Make the footer i...
1393
1394
def log_show():
    with open(LOG_FILE, 'r') as f:
bde97e4d   Goutte   Add more changes ...
1395
        contents = f.read()
fb383448   Goutte   Implement the cac...
1396
    return "<pre>" + contents + "</pre>"
bde97e4d   Goutte   Add more changes ...
1397
1398


1324cc91   Goutte   Make the footer i...
1399
1400
1401
1402
1403
1404
1405
@app.route("/log/clear")
def log_clear():
    with open(LOG_FILE, 'w') as f:
        f.truncate()
    return "Log cleared successfully."


1754789b   Goutte   Decorate and clea...
1406
1407
1408
1409
# DEV TOOLS ###################################################################

# @app.route("/inspect")
# def analyze_cdf():
a4a9ef03   Goutte   Cache generated C...
1410
#     """
1754789b   Goutte   Decorate and clea...
1411
#     For debug purposes.
a4a9ef03   Goutte   Cache generated C...
1412
#     """
1754789b   Goutte   Decorate and clea...
1413
1414
#     cdf_to_inspect = get_path("../res/dummy.nc")
#     cdf_to_inspect = get_path("../res/dummy_jupiter_coordinates.nc")
a4a9ef03   Goutte   Cache generated C...
1415
1416
#
#     si = StringIO.StringIO()
1754789b   Goutte   Decorate and clea...
1417
1418
#     cw = csv.DictWriter(si, fieldnames=['Name', 'Shape', 'Length'])
#     cw.writeheader()
a4a9ef03   Goutte   Cache generated C...
1419
#
1754789b   Goutte   Decorate and clea...
1420
1421
1422
1423
1424
1425
1426
1427
1428
1429
#     # Time, StartTime, StopTime, V, B, N, T, Delta_angle, P_dyn, QualityFlag
#     cdf_handle = Dataset(cdf_to_inspect, "r", format="NETCDF4")
#     for variable in cdf_handle.variables:
#         v = cdf_handle.variables[variable]
#         cw.writerow({
#             'Name': variable,
#             'Shape': v.shape,
#             'Length': v.size,
#         })
#     cdf_handle.close()
a4a9ef03   Goutte   Cache generated C...
1430
1431
1432
1433
#
#     return si.getvalue()


9390ec89   Goutte   Initial experimen...
1434
1435
1436
# MAIN ########################################################################

if __name__ == "__main__":
952e3d8f   Goutte   Move to another s...
1437
    # Debug mode is on, as the production server does not use this but run.wsgi
9390ec89   Goutte   Initial experimen...
1438
1439
    extra_files = [get_path('../config.yml')]
    app.run(debug=True, extra_files=extra_files)