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web/run.py 59.3 KB
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# coding=utf-8

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import StringIO
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import datetime
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import gzip
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import json
import logging
import random
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import tarfile
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import time
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import urllib
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import requests
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import re  # regex
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import numpy
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from csv import writer as csv_writer, DictWriter as csv_dict_writer
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from math import sqrt, isnan
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from os import environ, remove as removefile
from os.path import isfile, join, abspath, dirname

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# (i) Just ignore the requirements warning, we already require `dateutils`.
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from dateutil.relativedelta import relativedelta
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from dateutil import parser as dateparser

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from flask import Flask
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from flask import request
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from flask import url_for, send_from_directory, abort as abort_flask
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from jinja2 import Environment, FileSystemLoader, Markup
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from yaml import load as yaml_load
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from netCDF4 import Dataset, date2num
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# PATH RELATIVITY #############################################################

THIS_DIRECTORY = dirname(abspath(__file__))


def get_path(relative_path):
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    """Get an absolute path from the relative path to this script directory."""
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    return abspath(join(THIS_DIRECTORY, relative_path))


# COLLECT GLOBAL INFORMATION FROM SOURCES #####################################

# VERSION
with open(get_path('../VERSION'), 'r') as version_file:
    version = version_file.read().strip()

# CONFIG
with open(get_path('../config.yml'), 'r') as config_file:
    config = yaml_load(config_file.read())

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FILE_DATE_FMT = "%Y-%m-%dT%H:%M:%S"
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MOMENT_DATE_FMT = "%Y-%m-%dT%H:%M:%SZ"
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CME_DATE_FMT = "%Y-%m-%dT%H:%MZ"
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# Are we on the SSA instance for ESA?
SSA = environ.get('SSA') == 'true'
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DEBUG = environ.get('DEBUG') == 'true'
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# SSA = True
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# LOGGING #####################################################################

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LOG_FILE = get_path('run.log')

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log = logging.getLogger("HelioPropa")
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if DEBUG:
    log.setLevel(logging.DEBUG)
else:
    log.setLevel(logging.ERROR)
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logHandler = logging.FileHandler(LOG_FILE)
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logHandler.setFormatter(logging.Formatter(
    "%(asctime)s - %(levelname)s - %(message)s"
))
log.addHandler(logHandler)
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# HARDCODED CONFIGURATION #####################################################

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ASTRONOMICAL_UNIT_IN_KM = 1.496e8

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# Absolute path to the installed CDF library from https://cdf.gsfc.nasa.gov/
CDF_LIB = '/usr/local/lib/libcdf'

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# Absolute path to the data cache directory
CACHE_DIR = get_path('../cache')

# These two configs are not in the YAML config because adding a new parameter
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# will not work as-is, you'd have to edit some netcdf-related code.
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# The slugs of the available parameters in the generated CSV files.
# The order matters. If you change this you also need to change the
# innermost loop of `get_data_for_target`.
# The javascript knows the targets' properties under these names.
PROPERTIES = ('time', 'vrad', 'vtan', 'vtot', 'btan', 'temp', 'pdyn', 'dens',
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              'atse', 'xhee', 'yhee')
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# The parameters that the users can handle.
# The slug MUST be one of the properties above.
PARAMETERS = {
    'pdyn': {
        'slug': 'pdyn',
        'name': 'Dyn. Pressure',
        'title': 'The dynamic pressure.',
        'units': 'nPa',
        'active': True,
        'position': 10,
    },
    'vtot': {
        'slug': 'vtot',
        'name': 'Velocity',
        'title': 'The velocity of the particles.',
        'units': 'km/s',
        'active': False,
        'position': 20,
    },
    'btan': {
        'slug': 'btan',
        'name': 'B Tangential',
        'title': 'B Tangential.',
        'units': 'nT',
        'active': False,
        'position': 30,
    },
    'temp': {
        'slug': 'temp',
        'name': 'Temperature',
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        'title': 'The temperature.',
        'units': 'eV',
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        'active': False,
        'position': 40,
    },
    'dens': {
        'slug': 'dens',
        'name': 'Density',
        'title': 'The density N.',
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        'units': 'cm^-3',
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        'active': False,
        'position': 50,
    },
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    'atse': {
        'slug': 'atse',
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        'name': 'Angle T-S-E',
        'title': 'Angle Target-Sun-Earth.',
        'units': 'deg',
        'active': False,
        'position': 60,
    },
}


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# SETUP ENVIRONMENT ###########################################################
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environ['SPACEPY'] = CACHE_DIR
environ['CDF_LIB'] = CDF_LIB


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# SETUP FLASK ENGINE ##########################################################

app = Flask(__name__, root_path=THIS_DIRECTORY)
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app.debug = DEBUG
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if app.debug:
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    log.info("Starting Flask app IN DEBUG MODE...")
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else:
    log.info("Starting Flask app...")
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def handle_error(e):
    log.error(e)
    return str(e)  # wish we could use the default error renderer here

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app.register_error_handler(Exception, handle_error)


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# SETUP JINJA2 TEMPLATE ENGINE ################################################

def static_global(filename):
    return url_for('static', filename=filename)


def shuffle_filter(seq):
    """
    This shuffles the sequence it is applied to.
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    Jinja2 _should_ provide this.
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    """
    try:
        result = list(seq)
        random.shuffle(result)
        return result
    except:
        return seq


def markdown_filter(value, nl2br=False, p=True):
    """
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    Converts markdown into html.
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    nl2br: set to True to replace line breaks with <br> tags
    p: set to False to remove the enclosing <p></p> tags
    """
    from markdown import markdown
    from markdown.extensions.nl2br import Nl2BrExtension
    from markdown.extensions.abbr import AbbrExtension
    extensions = [AbbrExtension()]
    if nl2br is True:
        extensions.append(Nl2BrExtension())
    markdowned = markdown(value, output_format='html5', extensions=extensions)
    if p is False:
        markdowned = markdowned.replace(r"<p>", "").replace(r"</p>", "")
    return markdowned


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_js_escapes = {
        '\\': '\\u005C',
        '\'': '\\u0027',
        '"': '\\u0022',
        '>': '\\u003E',
        '<': '\\u003C',
        '&': '\\u0026',
        '=': '\\u003D',
        '-': '\\u002D',
        ';': '\\u003B',
        u'\u2028': '\\u2028',
        u'\u2029': '\\u2029'
}
# Escape every ASCII character with a value less than 32.
_js_escapes.update(('%c' % z, '\\u%04X' % z) for z in xrange(32))


def escapejs_filter(value):
    escaped = []
    for letter in value:
        if letter in _js_escapes:
            escaped.append(_js_escapes[letter])
        else:
            escaped.append(letter)

    return Markup("".join(escaped))

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tpl_engine = Environment(loader=FileSystemLoader([get_path('view')]),
                         trim_blocks=True,
                         lstrip_blocks=True)

tpl_engine.globals.update(
    url_for=url_for,
    static=static_global,
)

tpl_engine.filters['markdown'] = markdown_filter
tpl_engine.filters['md'] = markdown_filter
tpl_engine.filters['shuffle'] = shuffle_filter
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tpl_engine.filters['escapejs'] = escapejs_filter
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tpl_global_vars = {
    'request': request,
    'version': version,
    'config': config,
    'now': datetime.datetime.now(),
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    'is_esa': SSA,
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}


# HELPERS #####################################################################

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def abort(code, message):
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    log.error("Abort: " + message)
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    abort_flask(code, message)


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def render_view(view, context=None):
    """
    A simple helper to render [view] template with [context] vars.
    It automatically adds the global template vars defined above, too.
    It returns a string, usually the HTML contents to display.
    """
    context = {} if context is None else context
    return tpl_engine.get_template(view).render(
        dict(tpl_global_vars.items() + context.items())
    )


# def render_page(page, title="My Page", context=None):
#     """
#     A simple helper to render the md_page.html template with [context] vars &
#     the additional contents of `page/[page].md` in the `md_page` variable.
#     It automagically adds the global template vars defined above, too.
#     It returns a string, usually the HTML contents to display.
#     """
#     if context is None:
#         context = {}
#     context['title'] = title
#     context['md_page'] = ''
#     with file(get_path('page/%s.md' % page)) as f:
#         context['md_page'] = f.read()
#     return tpl_engine.get_template('md_page.html').render(
#         dict(tpl_global_vars.items() + context.items())
#     )

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def is_list_in_list(needle, haystack):
    for n in needle:
        if n not in haystack:
            return False
    return True


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def round_time(dt=None, round_to=60):
    """
    Round a datetime object to any time laps in seconds
    dt : datetime.datetime object, default now.
    roundTo : Closest number of seconds to round to, default 1 minute.
    """
    if dt is None:
        dt = datetime.datetime.now()
    seconds = (dt.replace(tzinfo=None) - dt.min).seconds
    rounding = (seconds + round_to / 2) // round_to * round_to
    return dt + datetime.timedelta(0, rounding-seconds, -dt.microsecond)


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def datetime_from_list(time_list):
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    """
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    Datetimes in retrieved CDFs are stored as lists of numbers,
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    with DayOfYear starting at 0. We want it starting at 1 because it's what
    vendor parsers use, both in python and javascript.
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    """
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    # Day Of Year starts at 0, but for our datetime parser it starts at 1
    doy = '{:03d}'.format(int(''.join(time_list[4:7])) + 1)
    return datetime.datetime.strptime(
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        "%s%s%s" % (''.join(time_list[0:4]), doy, ''.join(time_list[7:-1])),
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        "%Y%j%H%M%S%f"
    )
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def get_local_filename(url):
    """
    Build the local cache filename for the distant file
    :param url: string
    :return: string
    """
    from slugify import slugify
    n = len('http://')
    if url.startswith('https'):
        n += 1
    s = url[n:]
    return slugify(s)


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def get_target_config(slug):
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    for s in config['targets']:  # dumb
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        if s['slug'] == slug:
            return s
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    raise Exception("No target found in configuration for '%s'." % slug)
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def check_target_config(slug):
    get_target_config(slug)


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def get_active_targets():
    all_targets = config['targets']
    return [t for t in all_targets if not ('locked' in t and t['locked'])]


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def validate_tap_target_config(target):
    tc = get_target_config(target)
    if 'tap' not in tc:
        raise Exception("No `tap` configuration for target `%s`." % target)
    if 'target_name' not in tc['tap']:
        raise Exception("No `target_name` in the `tap` configuration for target `%s`." % target)
    return tc


# Using pyvo would be best.
# def retrieve_auroral_emissions_vopy(target_name):
#     api_url = "http://voparis-tap.obspm.fr/__system__/tap/run/tap/sync"
#     import pyvo as vo
#     service = vo.dal.TAPService(api_url)
#     # … can't figure out how to install pyvo and spacepy alongside (forking?)


def retrieve_auroral_emissions(target_name, d_started_at=None, d_stopped_at=None):
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    """
    Work In Progress.
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    :param target_name: You should probably not let users define this value,
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                        as our sanitizing for ADQL may not be 100% safe.
                        Use values from YAML configuration, instead.
                        Below is a list of the ids we found to be existing.
                        > SELECT DISTINCT target_name FROM apis.epn_core
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                        - Jupiter
                        - Saturn
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                        - Mars
                        - MERCURY
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                        - Titan
                        - Io
                        - VENUS
                        - Ganymede
                        - Uranus
                        - Callisto
                        - Europa
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                        https://pdssbn.astro.umd.edu/holdings/nh-p-rex-2-pluto-v1.0/document/codmac_level_definitions.pdf
                        processing_level == 3
                        
                        API doc and sandbox:
                        http://voparis-tap-planeto.obspm.fr/__system__/tap/run/info
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    :return: 
    """
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    # Try out the form
    # http://voparis-tap-planeto.obspm.fr/__system__/adql/query/form

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    api_url = "http://voparis-tap.obspm.fr/__system__/tap/run/tap/sync"
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    if d_started_at is None:
        d_started_at = datetime.datetime.now()
        t_started_at = time.mktime(d_started_at.timetuple()) - 3600 * 24 * 365 * 2
        # t_started_at = 1
    else:
        t_started_at = time.mktime(d_started_at.timetuple())

    if d_stopped_at is None:
        d_stopped_at = datetime.datetime.now()
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    t_stopped_at = time.mktime(d_stopped_at.timetuple())

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    def timestamp_to_jday(timestamp):
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        return timestamp / 86400.0 + 2440587.5

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    def jday_to_timestamp(jday):
        return (jday - 2440587.5) * 86400.0

    def jday_to_datetime(jday):
        return datetime.datetime.utcfromtimestamp(jday_to_timestamp(jday))

    # SELECT DISTINCT dataproduct_type FROM apis.epn_core
    # > im sp sc

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    query = """
SELECT
  time_min,
  time_max,
  thumbnail_url,
  external_link
FROM apis.epn_core
WHERE target_name='{target_name}'
AND   dataproduct_type='im'
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AND   time_min >= {jday_start}
AND   time_min <= {jday_stop}
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ORDER BY time_min, granule_gid
""".format(
        target_name=target_name.replace("'", "\\'"),
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        jday_start=timestamp_to_jday(t_started_at),
        jday_stop=timestamp_to_jday(t_stopped_at)
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    )
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# AND   processing_level = 4
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#     query = """
# SELECT DISTINCT target_name FROM apis.epn_core
# """

    try:
        response = requests.post(api_url, {
            'REQUEST': 'doQuery',
            'LANG':    'ADQL',
            'QUERY':   query,
            'TIMEOUT': '30',
            'FORMAT':  'VOTable/td'
        })

        response_xml = response.text

        import xml.etree.ElementTree as ET
        root = ET.fromstring(response_xml)
        namespaces = {'vo': 'http://www.ivoa.net/xml/VOTable/v1.3'}
        rows_xpath = "./vo:RESOURCE/vo:TABLE/vo:DATA/vo:TABLEDATA/vo:TR"
        rows = []
        for row in root.findall(rows_xpath, namespaces):
            rows.append({
11d86851   Goutte   Add support for s...
477
478
                'time_min': jday_to_datetime(float(row[0].text)),
                'time_max': jday_to_datetime(float(row[1].text)),
9f57dceb   Goutte   Add half the brid...
479
480
481
482
                'thumbnail_url': row[2].text,
                'external_link': row[3].text,
            })

81960a4f   Goutte   Fix an issue repo...
483
484
485
        # print("Auroral emission query")
        # print(query)
        # print("Auroral emission rows")
9f57dceb   Goutte   Add half the brid...
486
        # print(rows)
81960a4f   Goutte   Fix an issue repo...
487

9f57dceb   Goutte   Add half the brid...
488
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493
494
495
        return rows
    except Exception as e:
        print("Failed to retrieve auroral emissions :")
        print(e)

    # print(query)


180d7d97   Goutte   Refactor heavily.
496
def retrieve_amda_netcdf(orbiter, what, started_at, stopped_at):
8644387c   Goutte   Use real data.
497
    """
91c3d52d   Goutte   Add more logs.
498
499
    Handles remote querying AMDA's API for URLs, and then downloading,
    extracting and caching the netCDF files.
8644387c   Goutte   Use real data.
500
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    :param orbiter: key of the source in the YAML config
    :param what: either 'model' or 'orbit', a key in the config of the source
    :param started_at:
    :param stopped_at:
    :return: a list of local file paths to netCDF (.nc) files
    """

    url = config['amda'].format(
        dataSet=what,
        startTime=started_at.isoformat(),
        stopTime=stopped_at.isoformat()
    )
c50cc9d8   Goutte   Continue fixing.
512
    log.info("Fetching remote gzip files list at '%s'." % url)
b2837a08   Goutte   Add three retries...
513
514
    retries = 0
    success = False
92abc15b   Goutte   Mistrust the API ...
515
    errors = []
b2837a08   Goutte   Add three retries...
516
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518
519
520
521
522
523
    remote_gzip_files = []
    while not success and retries < 3:
        try:
            response = urllib.urlopen(url)
            remote_gzip_files = json.loads(response.read())
            if not remote_gzip_files:
                raise Exception("Failed to fetch data at '%s'." % url)
            if remote_gzip_files == 'NODATASET':
92abc15b   Goutte   Mistrust the API ...
524
525
526
                raise Exception("API says there's no dataset at '%s'." % url)
            if remote_gzip_files == 'ERROR':
                raise Exception("API returned an error at '%s'." % url)
077980eb   Goutte   Improve availabil...
527
            if remote_gzip_files == ['OUTOFTIME']:  # it happens
80352490   Goutte   Multi model suppo...
528
529
                return []
                # raise Exception("API says it's out of time at '%s'." % url)
b2837a08   Goutte   Add three retries...
530
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532
            success = True
        except Exception as e:
            log.warn("Failed (%d/3) '%s' : %s" % (retries+1, url, e.message))
92abc15b   Goutte   Mistrust the API ...
533
534
            remote_gzip_files = []
            errors.append(e)
b2837a08   Goutte   Add three retries...
535
536
537
        finally:
            retries += 1
    if not remote_gzip_files:
b52b494b   Goutte   Add even more logs.
538
        log.error("Failed to retrieve data from AMDA.")
91c3d52d   Goutte   Add more logs.
539
540
        log.error("Failed to fetch gzip files list for %s at '%s' : %s" %
                   (orbiter, url, errors))
08abc2d4   Goutte   Remove duplicate ...
541
542
543
544
        abort(400, "Failed to fetch gzip files list for %s at '%s' : %s" %
                   (orbiter, url, errors))
    else:
        remote_gzip_files = list(set(remote_gzip_files))
9bfa6c42   Goutte   More bug hunting.
545
546

    log.debug("Fetched remote gzip files list : %s." % str(remote_gzip_files))
8644387c   Goutte   Use real data.
547

8644387c   Goutte   Use real data.
548
549
    local_gzip_files = []
    for remote_gzip_file in remote_gzip_files:
077980eb   Goutte   Improve availabil...
550
551
552
        # hotfixes to remove when fixed upstream @Myriam
        if remote_gzip_file in ['OUTOFTIME', 'ERROR']:
            continue  # sometimes half the response is okay, the other not
8644387c   Goutte   Use real data.
553
        if remote_gzip_file.endswith('/.gz'):
80352490   Goutte   Multi model suppo...
554
            continue  # this is just a plain bug
8644387c   Goutte   Use real data.
555
        remote_gzip_file = remote_gzip_file.replace('cdpp1', 'cdpp', 1)
077980eb   Goutte   Improve availabil...
556
        ################################################
e18701b6   Goutte   Cache clear (remo...
557
        local_gzip_file = join(CACHE_DIR, get_local_filename(remote_gzip_file))
8644387c   Goutte   Use real data.
558
559
        local_gzip_files.append(local_gzip_file)
        if not isfile(local_gzip_file):
9bfa6c42   Goutte   More bug hunting.
560
            log.debug("Retrieving '%s'..." % local_gzip_file)
8644387c   Goutte   Use real data.
561
            urllib.urlretrieve(remote_gzip_file, local_gzip_file)
9bfa6c42   Goutte   More bug hunting.
562
            log.debug("Retrieved '%s'." % local_gzip_file)
dc0be992   Goutte   Support having no...
563
564
        else:
            log.debug("Found '%s' in the cache." % local_gzip_file)
8644387c   Goutte   Use real data.
565
566
567
568

    local_netc_files = []
    for local_gzip_file in local_gzip_files:
        local_netc_file = local_gzip_file[0:-3]
9bfa6c42   Goutte   More bug hunting.
569
        log.debug("Unzipping '%s'..." % local_gzip_file)
3c064b17   Goutte   Ignore failures w...
570
571
        success = True
        try:
5ef50583   Goutte   Clean up.
572
            with gzip.open(local_gzip_file) as f:
3c064b17   Goutte   Ignore failures w...
573
574
575
576
577
                file_content = f.read()
                with open(local_netc_file, 'w+b') as g:
                    g.write(file_content)
        except Exception as e:
            success = False
dc0be992   Goutte   Support having no...
578
579
580
581
582
            log.error("Cannot process gz file '%s' from '%s' : %s" %
                      (local_gzip_file, url, e))
            # Sometimes, the downloaded gz is corrupted, and CRC checks fail.
            # We want to delete the local gz file and try again next time.
            removefile(local_gzip_file)
3c064b17   Goutte   Ignore failures w...
583
        if success:
dc0be992   Goutte   Support having no...
584
            local_netc_files.append(local_netc_file)
3c064b17   Goutte   Ignore failures w...
585
            log.debug("Unzipped '%s'." % local_gzip_file)
8644387c   Goutte   Use real data.
586

ea6c8d5d   Goutte   Add interval cons...
587
    return list(set(local_netc_files))  # remove possible dupes
8644387c   Goutte   Use real data.
588
589


596da00d   Goutte   Add more exceptio...
590
591
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634
# class DataParser:
#     """
#     Default data parser
#     A wip to try to handle code exeptions sanely.
#     """
#
#     # Override these using the model configuration
#     default_nc_keys = {
#         'hee': 'HEE',
#         'vtot': 'V',
#         'magn': 'B',
#         'temp': 'T',
#         'dens': 'N',
#         'pdyn': 'P_dyn',
#         'atse': 'Delta_angle',
#     }
#
#     def __init__(self, target, model):
#         self.target = target
#         self.model = model
#         pass
#
#     def _read_var(self, nc, _keys, _key, mandatory=False):
#         try:
#             return nc.variables[_keys[_key]]
#         except KeyError:
#             pass
#         if mandatory:
#             raise Exception("No variable '%s' found in NetCDF." % _keys[_key])
#         return [None] * len(nc.variables['Time'])  # slow -- use numpy?
#
#     def parse(self, cdf_handle):
#         nc_keys = self.default_nc_keys.copy()
#
#         times = cdf_handle.variables['Time']  # YYYY DOY HH MM SS .ms
#         data_v = self._read_var(cdf_handle, nc_keys, 'vtot')
#         data_b = self._read_var(cdf_handle, nc_keys, 'magn')
#         data_t = self._read_var(cdf_handle, nc_keys, 'temp')
#         data_n = self._read_var(cdf_handle, nc_keys, 'dens')
#         data_p = self._read_var(cdf_handle, nc_keys, 'pdyn')
#         data_a = self._read_var(cdf_handle, nc_keys, 'atse')
#
#         return zip()


de97d643   Goutte   Fix more bugs.
635
636
def get_data_for_target(target_config, input_slug,
                        started_at, stopped_at):
180d7d97   Goutte   Refactor heavily.
637
638
639
640
    """
    :return: dict whose keys are datetime as str, values tuples of data
    """
    log.debug("Grabbing data for '%s'..." % target_config['slug'])
80352490   Goutte   Multi model suppo...
641

8644387c   Goutte   Use real data.
642
    try:
297a7dfc   Goutte   Add support for i...
643
        models = target_config['models'][input_slug]
077980eb   Goutte   Improve availabil...
644
645
    except Exception as e:
        abort(500, "Invalid model configuration for '%s' : %s"
180d7d97   Goutte   Refactor heavily.
646
647
              % (target_config['slug'], str(e)))
    try:
80352490   Goutte   Multi model suppo...
648
        orbits = target_config['orbit']['models']
d1c44c51   Goutte   Enable Earth
649
650
651
652
    except KeyError as e:
        orbits = []
        # abort(500, "Invalid orbit configuration for '%s' : %s"
        #       % (target_config['slug'], str(e)))
28ef3790   Goutte   Clean up.
653

58bfe281   Goutte   Handle start and ...
654
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660
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664
    def _sta_sto(_cnf, _sta, _sto):
        if 'started_at' in _cnf:
            _s0 = datetime.datetime.strptime(_cnf['started_at'], FILE_DATE_FMT)
            _s0 = max(_s0, _sta)
        else:
            _s0 = _sta
        if 'stopped_at' in _cnf:
            _s1 = datetime.datetime.strptime(_cnf['stopped_at'], FILE_DATE_FMT)
            _s1 = min(_s1, _sto)
        else:
            _s1 = _sto
aa7247d6   Goutte   Generate a CDF fi...
665
        return _s0, _s1
80352490   Goutte   Multi model suppo...
666

d1c44c51   Goutte   Enable Earth
667
668
669
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673
674
675
    def _read_var(_nc, _keys, _key, mandatory=False):
        try:
            return _nc.variables[_keys[_key]]
        except KeyError:
            pass
        if mandatory:
            raise Exception("No variable '%s' found in NetCDF." % _keys[_key])
        return [None] * len(_nc.variables['Time'])  # slow -- use numpy!

fd1829c3   Goutte   Use the new AMDA API
676
    # Override these using the model configuration in config.yml
d1c44c51   Goutte   Enable Earth
677
678
679
680
681
682
683
684
685
686
    default_nc_keys = {
        'hee': 'HEE',
        'vtot': 'V',
        'magn': 'B',
        'temp': 'T',
        'dens': 'N',
        'pdyn': 'P_dyn',
        'atse': 'Delta_angle',
    }

80352490   Goutte   Multi model suppo...
687
    precision = "%Y-%m-%dT%H"  # model and orbits times are only equal-ish
180d7d97   Goutte   Refactor heavily.
688
    orbit_data = {}  # keys are datetime as str, values arrays of XY
ea6c8d5d   Goutte   Add interval cons...
689
690

    for orbit in orbits:
58bfe281   Goutte   Handle start and ...
691
        s0, s1 = _sta_sto(orbit, started_at, stopped_at)
ea6c8d5d   Goutte   Add interval cons...
692

d1c44c51   Goutte   Enable Earth
693
694
695
696
        nc_keys = default_nc_keys.copy()
        if 'parameters' in orbit:
            nc_keys.update(orbit['parameters'])

ea6c8d5d   Goutte   Add interval cons...
697
698
699
700
701
702
703
704
        orbit_files = retrieve_amda_netcdf(
            target_config['slug'], orbit['slug'], s0, s1
        )
        for orbit_file in orbit_files:
            log.debug("%s: opening orbit NETCDF4 '%s'..." %
                      (target_config['name'], orbit_file))
            cdf_handle = Dataset(orbit_file, "r", format="NETCDF4")
            times = cdf_handle.variables['Time']  # YYYY DOY HH MM SS .ms
d1c44c51   Goutte   Enable Earth
705
            data_hee = _read_var(cdf_handle, nc_keys, 'hee', mandatory=True)
ea6c8d5d   Goutte   Add interval cons...
706
707
708

            log.debug("%s: aggregating data from '%s'..." %
                      (target_config['name'], orbit_file))
d1c44c51   Goutte   Enable Earth
709
            for ltime, datum_hee in zip(times, data_hee):
1324cc91   Goutte   Make the footer i...
710
                try:
d1c44c51   Goutte   Enable Earth
711
712
713
714
                    dtime = datetime_from_list(ltime)
                except Exception:
                    log.error("Failed to parse time from %s." % ltime)
                    raise
81cb3ba6   Goutte   Fix an issue with...
715
                # Keep only what's in the interval
ea6c8d5d   Goutte   Add interval cons...
716
                if s0 <= dtime <= s1:
1324cc91   Goutte   Make the footer i...
717
                    dkey = round_time(dtime, 60*60).strftime(precision)
ea6c8d5d   Goutte   Add interval cons...
718
719
                    orbit_data[dkey] = datum_hee
            cdf_handle.close()
180d7d97   Goutte   Refactor heavily.
720

8644387c   Goutte   Use real data.
721
    all_data = {}  # keys are datetime as str, values tuples of data
81cb3ba6   Goutte   Fix an issue with...
722

58bfe281   Goutte   Handle start and ...
723
724
725
726
727
    for model in models:
        s0, s1 = _sta_sto(model, started_at, stopped_at)
        model_files = retrieve_amda_netcdf(
            target_config['slug'], model['slug'], s0, s1
        )
d1c44c51   Goutte   Enable Earth
728
729
730
731
        nc_keys = default_nc_keys.copy()
        if 'parameters' in model:
            nc_keys.update(model['parameters'])

129181a6   Goutte   Add more logs to ...
732
733
734
735
        if len(model_files) == 0:
            log.warn("No model data for '%s' '%s'."
                     % (target_config['slug'], model['slug']))

58bfe281   Goutte   Handle start and ...
736
        for model_file in model_files:
58bfe281   Goutte   Handle start and ...
737
738
739
            log.debug("%s: opening model NETCDF4 '%s'..." %
                      (target_config['name'], model_file))
            cdf_handle = Dataset(model_file, "r", format="NETCDF4")
596da00d   Goutte   Add more exceptio...
740

d1c44c51   Goutte   Enable Earth
741
            # log.debug(cdf_handle.variables.keys())
596da00d   Goutte   Add more exceptio...
742

58bfe281   Goutte   Handle start and ...
743
            times = cdf_handle.variables['Time']  # YYYY DOY HH MM SS .ms
d1c44c51   Goutte   Enable Earth
744
745
746
747
748
749
750
            data_v = _read_var(cdf_handle, nc_keys, 'vtot')
            data_b = _read_var(cdf_handle, nc_keys, 'magn')
            data_t = _read_var(cdf_handle, nc_keys, 'temp')
            data_n = _read_var(cdf_handle, nc_keys, 'dens')
            data_p = _read_var(cdf_handle, nc_keys, 'pdyn')
            data_a = _read_var(cdf_handle, nc_keys, 'atse')

d1c44c51   Goutte   Enable Earth
751
752
753
754
755
756
757
758
759
            # Usually:
            # Time, StartTime, StopTime, V, B, N, T, Delta_angle, P_dyn
            # Earth:
            # Time, BartelsNumber, ImfID, SwID, ImfPoints,
            # SwPoints, B_M_av, B_Vec_av, B_Theta_av,
            # B_Phi_av, B, T, N, V, Vlat, Vlon,
            # Alpha, RamP, E, Beta, Ma, Kp, R, DST,
            # AE, Flux, Flag, F10_Index, StartTime, StopTime

81cb3ba6   Goutte   Fix an issue with...
760
761
762
763
764
765
            # Don't ignore, but instead, compute a mean ?
            # Look for discretisation ? temporal drizzling ? 1D drizzling ?
            # The easy linear mean feels a bit rough too. Running mean too.
            # FIXME
            ignored_count = 0

58bfe281   Goutte   Handle start and ...
766
767
            log.debug("%s: aggregating data from '%s'..." %
                      (target_config['name'], model_file))
d1c44c51   Goutte   Enable Earth
768
769
770
            for ltime, datum_v, datum_b, datum_t, datum_n, datum_p, datum_a \
                    in zip(times, data_v, data_b, data_t, data_n, data_p, data_a):

58bfe281   Goutte   Handle start and ...
771
                try:
d1c44c51   Goutte   Enable Earth
772
773
774
775
                    dtime = datetime_from_list(ltime)
                except Exception:
                    log.error("Failed to parse time from %s." % ltime)
                    raise
596da00d   Goutte   Add more exceptio...
776

81cb3ba6   Goutte   Fix an issue with...
777
778
779
780
781
782
783
784
785
786
787
788
789
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792
793
794
795
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799
800
801
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806
807
808
809
                if not (s0 <= dtime <= s1):
                    continue  # Cull what's out of the interval

                droundtime = round_time(dtime, 60*60)
                dkey = droundtime.strftime(precision)

                x_hee = None
                y_hee = None
                if dkey in orbit_data:
                    x_hee = orbit_data[dkey][0] / ASTRONOMICAL_UNIT_IN_KM
                    y_hee = orbit_data[dkey][1] / ASTRONOMICAL_UNIT_IN_KM

                # First exception: V may be a vector instead of a scalar
                if hasattr(datum_v, '__len__'):
                    vrad = datum_v[0]
                    vtan = datum_v[1]
                    vtot = sqrt(vrad * vrad + vtan * vtan)
                else:  # eg: Earth
                    vrad = None
                    vtan = None
                    vtot = datum_v

                # Second exception: Earth is always at (1, 0)
                if target_config['slug'] == 'earth':
                    x_hee = 1
                    y_hee = 0

                # Third exception: B is a Vector3 or a Vector2 for Earth
                if target_config['slug'] == 'earth':
                    if model['slug'] == 'omni_hour_all':  # Vector3
                        datum_b = datum_b[0]
                    # if model['slug'] == 'ace_swepam_real':  # Vector2
                    #     datum_b = datum_b[0]
56028f6d   Myriam Bouchemit   bug for dyn press...
810
                    if model['slug'] == 'ace_swepam_real_1h':
206d8d14   Goutte   Clean up.
811
                        datum_p = datum_n * vtot * vtot * 1.6726e-6
81cb3ba6   Goutte   Fix an issue with...
812
813
814
                    if vtot is None or isnan(vtot):
                        continue

7176ae9b   Goutte   Fix Myriam's cont...
815
816
817
818
819
                # Fourth exception: Earth temp is in K, not eV
                # @nandre: à vérifier ! Where is la constante de Boltzmann ?
                if target_config['slug'] == 'earth' and datum_t:
                    datum_t = datum_t / 11605.0

81cb3ba6   Goutte   Fix an issue with...
820
821
                # Keep adding exceptions here until you can't or become mad

2be8e8a0   Goutte   Ignore bad data.
822
                # Ignore bad data
ff11e121   Goutte   Don't ignore bad ...
823
824
                # if numpy.isnan(datum_t):
                #     continue
2be8e8a0   Goutte   Ignore bad data.
825

81cb3ba6   Goutte   Fix an issue with...
826
827
828
829
830
831
832
833
834
835
836
837
838
839
840
841
842
843
                # Crude/Bad drizzling condition : first found datum in the hour
                # gets to set the data. Improve this.
                if dkey not in all_data:
                    # /!. The Set value MUST be in the same order as PROPERTIES
                    all_data[dkey] = (
                        dtime.strftime("%Y-%m-%dT%H:%M:%S+00:00"),
                        vrad, vtan, vtot,
                        datum_b, datum_t, datum_p, datum_n, datum_a,
                        x_hee, y_hee
                    )
                else:
                    ignored_count += 1

            # Improve this loop so as to remove this stinky debug log
            if ignored_count > 0:
                log.debug("    Ignored %d datum(s) during ~\"drizzling\"."
                          % ignored_count)

58bfe281   Goutte   Handle start and ...
844
            cdf_handle.close()
8644387c   Goutte   Use real data.
845

180d7d97   Goutte   Refactor heavily.
846
847
848
    return all_data


297a7dfc   Goutte   Add support for i...
849
def generate_csv_contents(target_slug, input_slug, started_at, stopped_at):
180d7d97   Goutte   Refactor heavily.
850
851
852
853
854
855
    target_config = get_target_config(target_slug)
    log.debug("Crunching CSV contents for '%s'..." % target_config['name'])
    si = StringIO.StringIO()
    cw = csv_writer(si)
    cw.writerow(PROPERTIES)

297a7dfc   Goutte   Add support for i...
856
857
858
859
    all_data = get_data_for_target(
        target_config=target_config, input_slug=input_slug,
        started_at=started_at, stopped_at=stopped_at
    )
180d7d97   Goutte   Refactor heavily.
860
861

    log.debug("Writing and sorting CSV for '%s'..." % target_config['slug'])
8644387c   Goutte   Use real data.
862
863
    for dkey in sorted(all_data):
        cw.writerow(all_data[dkey])
2d2af24b   Goutte   Add a basic orbit...
864

180d7d97   Goutte   Refactor heavily.
865
    log.info("Generated CSV contents for '%s'." % target_config['slug'])
2d2af24b   Goutte   Add a basic orbit...
866
867
    return si.getvalue()

8644387c   Goutte   Use real data.
868

de97d643   Goutte   Fix more bugs.
869
870
def generate_csv_file_if_needed(target_slug, input_slug,
                                started_at, stopped_at):
297a7dfc   Goutte   Add support for i...
871
872
873
    filename = "%s_%s_%s_%s.csv" % (target_slug, input_slug,
                                    started_at.strftime(FILE_DATE_FMT),
                                    stopped_at.strftime(FILE_DATE_FMT))
e18701b6   Goutte   Cache clear (remo...
874
    local_csv_file = join(CACHE_DIR, filename)
80352490   Goutte   Multi model suppo...
875
876
877

    generate = True
    if isfile(local_csv_file):
297a7dfc   Goutte   Add support for i...
878
        # It needs to have more than one line to not be empty (headers)
80352490   Goutte   Multi model suppo...
879
880
881
882
883
884
885
886
887
        with open(local_csv_file) as f:
            cnt = 0
            for _ in f:
                cnt += 1
                if cnt > 1:
                    generate = False
                    break

    if generate:
c0df94bc   Goutte   Adding more logs.
888
889
890
        log.info("Generating CSV '%s'..." % local_csv_file)
        try:
            with open(local_csv_file, mode="w+") as f:
de97d643   Goutte   Fix more bugs.
891
892
893
894
                f.write(generate_csv_contents(
                    target_slug=target_slug, input_slug=input_slug,
                    started_at=started_at, stopped_at=stopped_at
                ))
c0df94bc   Goutte   Adding more logs.
895
896
            log.info("Generation of '%s' done." % filename)
        except Exception as e:
d1c44c51   Goutte   Enable Earth
897
898
899
            from sys import exc_info
            from traceback import extract_tb
            exc_type, exc_value, exc_traceback = exc_info()
dc0be992   Goutte   Support having no...
900
            log.error(e)
d1c44c51   Goutte   Enable Earth
901
902
            for trace in extract_tb(exc_traceback):
                log.error(trace)
5ede388f   Goutte   Make sure failed ...
903
            if isfile(local_csv_file):
92abc15b   Goutte   Mistrust the API ...
904
                log.warn("Removing failed CSV '%s'..." % local_csv_file)
5ede388f   Goutte   Make sure failed ...
905
                removefile(local_csv_file)
9bfa6c42   Goutte   More bug hunting.
906
            abort(500, "Failed creating CSV '%s' : %s" % (filename, e))
c0df94bc   Goutte   Adding more logs.
907
908


e18701b6   Goutte   Cache clear (remo...
909
910
911
912
913
914
915
916
917
918
919
920
921
922
923
924
925
926
927
928
929
930
931
def remove_all_files(in_directory):
    """
    Will throw if something horrible happens.
    Does not remove recursively (could be done with os.walk if needed).
    Does not remove directories either.
    :param in_directory: absolute path to directory
    :return:
    """
    import os

    if not os.path.isdir(in_directory):
        raise ValueError("No directory to clean at '%s'.")

    removed_files = []
    for file_name in os.listdir(in_directory):
        file_path = os.path.join(in_directory, file_name)
        if os.path.isfile(file_path):
            os.remove(file_path)
            removed_files.append(file_path)

    return removed_files


28bb4b28   Goutte   API for the cache...
932
933
def remove_files_created_before(date, in_directory):
    """
077980eb   Goutte   Improve availabil...
934
935
936
    Will throw if something horrible happens.
    Does not remove recursively (could be done with os.walk if needed).
    Does not remove directories either.
28bb4b28   Goutte   API for the cache...
937
    :param date: datetime object
077980eb   Goutte   Improve availabil...
938
    :param in_directory: absolute path to directory
28bb4b28   Goutte   API for the cache...
939
940
941
942
943
944
945
    :return:
    """
    import os
    import time

    secs = time.mktime(date.timetuple())

077980eb   Goutte   Improve availabil...
946
947
    if not os.path.isdir(in_directory):
        raise ValueError("No directory to clean at '%s'.")
28bb4b28   Goutte   API for the cache...
948
949
950
951

    removed_files = []
    for file_name in os.listdir(in_directory):
        file_path = os.path.join(in_directory, file_name)
077980eb   Goutte   Improve availabil...
952
953
954
955
956
        if os.path.isfile(file_path):
            t = os.stat(file_path)
            if t.st_ctime < secs:
                os.remove(file_path)
                removed_files.append(file_path)
28bb4b28   Goutte   API for the cache...
957
958
959
960

    return removed_files


297a7dfc   Goutte   Add support for i...
961
962
def get_input_slug_from_query(inp=None):
    if inp is None:
b662fcc3   hitier   Change input name...
963
        input_slug = request.args.get('input_slug', config['defaults']['input_slug'])
297a7dfc   Goutte   Add support for i...
964
965
    else:
        input_slug = inp
de97d643   Goutte   Fix more bugs.
966
    if input_slug not in [i['slug'] for i in config['inputs']]:
b662fcc3   hitier   Change input name...
967
        input_slug = config['defaults']['input_slug']  # be tolerant instead of yelling loudly
297a7dfc   Goutte   Add support for i...
968
969
970
    return input_slug


284f4688   Goutte   Continue layers i...
971
972
973
def get_interval_from_query():
    """
    Get the interval from the query, or from defaults.
3309d7c3   Goutte   Improve the date ...
974
    Returns ISO date strings.
284f4688   Goutte   Continue layers i...
975
    """
65b27161   hitier   Change default ti...
976
    before = relativedelta(months=1)
284f4688   Goutte   Continue layers i...
977
978
979
980
981
982
983
984
985
986
    after = relativedelta(months=1)
    today = datetime.datetime.now().replace(hour=0, minute=0, second=0)
    started_at = today - before
    stopped_at = today + after
    default_started_at = started_at.strftime(FILE_DATE_FMT)
    default_stopped_at = stopped_at.strftime(FILE_DATE_FMT)

    started_at = request.args.get('started_at', default_started_at)
    stopped_at = request.args.get('stopped_at', default_stopped_at)

3309d7c3   Goutte   Improve the date ...
987
988
989
990
991
    d_started_at = dateparser.isoparse(started_at)
    d_stopped_at = dateparser.isoparse(stopped_at)
    started_at = d_started_at.strftime(FILE_DATE_FMT)
    stopped_at = d_stopped_at.strftime(FILE_DATE_FMT)

284f4688   Goutte   Continue layers i...
992
993
994
    return started_at, stopped_at


1185f353   Goutte   Fix the CME Catal...
995
def get_catalog_layers(input_slug, target_slug, started_at, stopped_at):
0332f168   Goutte   Initial support f...
996
    """
284f4688   Goutte   Continue layers i...
997
998
    In the JSON file we have "columns" and "data".
    Of course, each JSON file has its own columns, with different conventions.
0332f168   Goutte   Initial support f...
999
1000
1001
1002
1003
    
    :param input_slug: 
    :param target_slug: 
    :return: 
    """
0332f168   Goutte   Initial support f...
1004
    import json
2204c3f7   Goutte   Improve layers co...
1005
1006

    def _get_index_of_key(_data, _key):
2204c3f7   Goutte   Improve layers co...
1007
1008
1009
1010
1011
1012
1013
        try:
            index = _data['columns'].index(_key)
        except ValueError:
            log.error("Key %s not found in columns of %s" % (_key, _data))
            raise
        return index

1185f353   Goutte   Fix the CME Catal...
1014
1015
1016
1017
1018
1019
1020
1021
1022
    try:
        started_at = datetime.datetime.strptime(started_at, FILE_DATE_FMT)
    except:
        abort(400, "Invalid started_at parameter : '%s'." % started_at)
    try:
        stopped_at = datetime.datetime.strptime(stopped_at, FILE_DATE_FMT)
    except:
        abort(400, "Invalid stopped_at parameter : '%s'." % stopped_at)

0332f168   Goutte   Initial support f...
1023
    catalog_layers = {}
1ab47144   Goutte   Add new menus, up...
1024
    for config_layer in config['layers']['catalogs']:
0332f168   Goutte   Initial support f...
1025
1026
        if 'data' not in config_layer:
            continue
0332f168   Goutte   Initial support f...
1027
1028
1029
1030
1031
1032
        catalog_layers[config_layer['slug']] = []
        for cl_datum in config_layer['data']:
            if input_slug not in cl_datum:
                continue
            if target_slug not in cl_datum[input_slug]:
                continue
b03d5eb1   Goutte   Add the last CME ...
1033
1034
1035
1036
1037
            if cl_datum[input_slug][target_slug] is None:
                # We used ~ in the config, there are no constraints
                constraints = []
            else:
                constraints = cl_datum[input_slug][target_slug]['constraints']
1185f353   Goutte   Fix the CME Catal...
1038

0332f168   Goutte   Initial support f...
1039
1040
            with open(get_path("../data/catalog/%s" % cl_datum['file'])) as f:
                json_data = json.load(f)
284f4688   Goutte   Continue layers i...
1041
1042
1043
                if 'start' not in cl_datum:
                    log.error("Invalid configuration: 'start' is missing.")
                    continue  # skip this
1185f353   Goutte   Fix the CME Catal...
1044
                if 'format' not in cl_datum:
54bb1311   Goutte   Bring back the CM...
1045
1046
1047
                    cl_datum['format'] = CME_DATE_FMT
                    # log.error("Invalid configuration: 'format' is missing.")
                    # continue  # skip this
284f4688   Goutte   Continue layers i...
1048
1049
1050
1051
1052
                start_index = _get_index_of_key(json_data, cl_datum['start'])
                if 'stop' not in cl_datum:
                    stop_index = start_index
                else:
                    stop_index = _get_index_of_key(json_data, cl_datum['stop'])
2204c3f7   Goutte   Improve layers co...
1053

0332f168   Goutte   Initial support f...
1054
                for json_datum in json_data['data']:
2204c3f7   Goutte   Improve layers co...
1055
                    validates_any_constraint = False
b03d5eb1   Goutte   Add the last CME ...
1056
1057
                    if 0 == len(constraints):
                        validates_any_constraint = True
2204c3f7   Goutte   Improve layers co...
1058
1059
1060
1061
1062
1063
1064
1065
1066
1067
1068
1069
1070
                    for constraint in constraints:
                        validates_constraint = True
                        for key, possible_values in constraint.iteritems():
                            actual_value = json_datum[_get_index_of_key(
                                json_data, key
                            )]
                            if actual_value not in possible_values:
                                validates_constraint = False
                                break
                        if validates_constraint:
                            validates_any_constraint = True
                            break
                    if not validates_any_constraint:
0332f168   Goutte   Initial support f...
1071
                        continue
284f4688   Goutte   Continue layers i...
1072
1073
                    start_time = json_datum[start_index]
                    stop_time = json_datum[stop_index]
1185f353   Goutte   Fix the CME Catal...
1074
1075
1076
1077
1078
1079
1080
1081
1082
1083
1084

                    start_time = datetime.datetime.strptime(
                        start_time, cl_datum['format']
                    )
                    stop_time = datetime.datetime.strptime(
                        stop_time, cl_datum['format']
                    )

                    if start_time < started_at:
                        continue

0332f168   Goutte   Initial support f...
1085
                    catalog_layers[config_layer['slug']].append({
1185f353   Goutte   Fix the CME Catal...
1086
1087
                        'start': start_time.strftime(MOMENT_DATE_FMT),
                        'stop':  stop_time.strftime(MOMENT_DATE_FMT),
0332f168   Goutte   Initial support f...
1088
                    })
0332f168   Goutte   Initial support f...
1089
1090
1091
1092

    return catalog_layers


077980eb   Goutte   Improve availabil...
1093
1094
1095
1096
1097
1098
1099
1100
1101
1102
1103
def get_hit_counter():
    hit_count_path = get_path("../VISITS")

    if isfile(hit_count_path):
        hit_count = int(open(hit_count_path).read())
    else:
        hit_count = 1

    return hit_count


a4a9ef03   Goutte   Cache generated C...
1104
1105
1106
1107
1108
1109
1110
1111
1112
1113
1114
1115
1116
1117
1118
1119
def increment_hit_counter():
    hit_count_path = get_path("../VISITS")

    if isfile(hit_count_path):
        hit_count = int(open(hit_count_path).read())
        hit_count += 1
    else:
        hit_count = 1

    hit_counter_file = open(hit_count_path, 'w')
    hit_counter_file.write(str(hit_count))
    hit_counter_file.close()

    return hit_count


4aaf6874   Goutte   Try fixing the ge...
1120
1121
def update_spacepy():
    """
11d86851   Goutte   Add support for s...
1122
    Importing pycdf will fail if the toolbox is not up to date.
4aaf6874   Goutte   Try fixing the ge...
1123
    """
4aaf6874   Goutte   Try fixing the ge...
1124
1125
1126
1127
1128
1129
1130
1131
1132
    try:
        log.info("Updating spacepy's toolbox…")
        import spacepy.toolbox

        spacepy.toolbox.update()
    except Exception as e:
        log.error("Failed to update spacepy : %s." % e)


077980eb   Goutte   Improve availabil...
1133
1134
1135
tpl_global_vars['visits'] = get_hit_counter()


a4a9ef03   Goutte   Cache generated C...
1136
1137
1138
# ROUTING #####################################################################

@app.route('/favicon.ico')
bde97e4d   Goutte   Add more changes ...
1139
def favicon():  # we want it served from the root, not from static/
a4a9ef03   Goutte   Cache generated C...
1140
1141
1142
1143
1144
1145
1146
1147
1148
1149
    return send_from_directory(
        join(app.root_path, 'static', 'img'),
        'favicon.ico', mimetype='image/vnd.microsoft.icon'
    )


@app.route("/")
@app.route("/home.html")
@app.route("/index.html")
def home():
077980eb   Goutte   Improve availabil...
1150
    increment_hit_counter()
bde97e4d   Goutte   Add more changes ...
1151
1152
    parameters = PARAMETERS.values()
    parameters.sort(key=lambda x: x['position'])
297a7dfc   Goutte   Add support for i...
1153
    input_slug = get_input_slug_from_query()
0332f168   Goutte   Initial support f...
1154
    targets = [t for t in config['targets'] if not t['locked']]
284f4688   Goutte   Continue layers i...
1155
    started_at, stopped_at = get_interval_from_query()
0332f168   Goutte   Initial support f...
1156
1157
    for i, target in enumerate(targets):
        targets[i]['catalog_layers'] = get_catalog_layers(
1185f353   Goutte   Fix the CME Catal...
1158
            input_slug, target['slug'], started_at, stopped_at
0332f168   Goutte   Initial support f...
1159
        )
a4a9ef03   Goutte   Cache generated C...
1160
    return render_view('home.html.jinja2', {
0332f168   Goutte   Initial support f...
1161
1162
        # 'targets': config['targets'],
        'targets': targets,
bde97e4d   Goutte   Add more changes ...
1163
        'parameters': parameters,
297a7dfc   Goutte   Add support for i...
1164
        'input_slug': input_slug,
284f4688   Goutte   Continue layers i...
1165
1166
        'started_at': started_at,
        'stopped_at': stopped_at,
a4a9ef03   Goutte   Cache generated C...
1167
1168
1169
        'planets': [s for s in config['targets'] if s['type'] == 'planet'],
        'probes':  [s for s in config['targets'] if s['type'] == 'probe'],
        'comets':  [s for s in config['targets'] if s['type'] == 'comet'],
077980eb   Goutte   Improve availabil...
1170
        'visits':  get_hit_counter(),
a4a9ef03   Goutte   Cache generated C...
1171
1172
1173
    })


64a671cd   Goutte   Add an About page.
1174
1175
@app.route("/about.html")
def about():
36961d6f   Goutte   Slightly improve ...
1176
    import uuid
64a671cd   Goutte   Add an About page.
1177
1178
    increment_hit_counter()
    return render_view('about.html.jinja2', {
36961d6f   Goutte   Slightly improve ...
1179
1180
1181
        'authors_emails': [a['mail'] for a in config['authors']],
        'uuid4': str(uuid.uuid4())[0:3],
        'visits': get_hit_counter(),
64a671cd   Goutte   Add an About page.
1182
1183
1184
    })


6288347a   Goutte   Add the HELP page...
1185
1186
1187
1188
1189
1190
1191
@app.route("/help.html")
def help():
    return render_view('help.html.jinja2', {
        'visits': get_hit_counter(),
    })


297a7dfc   Goutte   Add support for i...
1192
1193
@app.route("/<target>_<inp>_<started_at>_<stopped_at>.csv")
def download_target_csv(target, inp, started_at, stopped_at):
a4a9ef03   Goutte   Cache generated C...
1194
1195
1196
1197
    """
    Grab data and orbit data for the specified `target`,
    rearrange it and return it as a CSV file.
    `started_at` and `stopped_at` should be UTC.
b662fcc3   hitier   Change input name...
1198
    `inp` is the input slug, omni or sa or sb.
a4a9ef03   Goutte   Cache generated C...
1199
    """
180d7d97   Goutte   Refactor heavily.
1200
    check_target_config(target)
a4a9ef03   Goutte   Cache generated C...
1201
    try:
c0df94bc   Goutte   Adding more logs.
1202
        started_at = datetime.datetime.strptime(started_at, FILE_DATE_FMT)
a4a9ef03   Goutte   Cache generated C...
1203
1204
1205
    except:
        abort(400, "Invalid started_at parameter : '%s'." % started_at)
    try:
c0df94bc   Goutte   Adding more logs.
1206
        stopped_at = datetime.datetime.strptime(stopped_at, FILE_DATE_FMT)
a4a9ef03   Goutte   Cache generated C...
1207
1208
    except:
        abort(400, "Invalid stopped_at parameter : '%s'." % stopped_at)
297a7dfc   Goutte   Add support for i...
1209
    input_slug = get_input_slug_from_query(inp=inp)
a4a9ef03   Goutte   Cache generated C...
1210

297a7dfc   Goutte   Add support for i...
1211
1212
1213
    filename = "%s_%s_%s_%s.csv" % (target, input_slug,
                                    started_at.strftime(FILE_DATE_FMT),
                                    stopped_at.strftime(FILE_DATE_FMT))
e18701b6   Goutte   Cache clear (remo...
1214
    local_csv_file = join(CACHE_DIR, filename)
297a7dfc   Goutte   Add support for i...
1215
1216
1217
1218
    generate_csv_file_if_needed(
        target_slug=target, input_slug=input_slug,
        started_at=started_at, stopped_at=stopped_at
    )
a4a9ef03   Goutte   Cache generated C...
1219
1220
1221
    if not isfile(local_csv_file):
        abort(500, "Could not cache CSV file at '%s'." % local_csv_file)

e18701b6   Goutte   Cache clear (remo...
1222
    return send_from_directory(CACHE_DIR, filename)
a4a9ef03   Goutte   Cache generated C...
1223
1224


297a7dfc   Goutte   Add support for i...
1225
1226
@app.route("/<targets>_<inp>_<started_at>_<stopped_at>.tar.gz")
def download_targets_tarball(targets, inp, started_at, stopped_at):
b2837a08   Goutte   Add three retries...
1227
    """
bc18b96c   Goutte   Implement first (...
1228
1229
1230
    Grab data and orbit data for each of the specified `targets`,
    in their own CSV file, and make a tarball of them.
    `started_at` and `stopped_at` should be UTC strings.
b2837a08   Goutte   Add three retries...
1231

ea6c8d5d   Goutte   Add interval cons...
1232
1233
    Note: we do not use this route anymore, but let's keep it shelved for now.

2fedd73b   Goutte   Initial implement...
1234
    targets: string list of targets' slugs, separated by `-`.
b2837a08   Goutte   Add three retries...
1235
    """
2fedd73b   Goutte   Initial implement...
1236
    separator = '-'
0511eed7   Goutte   Tarball generatio...
1237
1238
    targets = targets.split(separator)
    targets.sort()
2fedd73b   Goutte   Initial implement...
1239
1240
    targets_configs = []
    for target in targets:
b2837a08   Goutte   Add three retries...
1241
1242
        if not target:
            abort(400, "Invalid targets format : `%s`." % targets)
180d7d97   Goutte   Refactor heavily.
1243
        targets_configs.append(get_target_config(target))
2fedd73b   Goutte   Initial implement...
1244
    if 0 == len(targets_configs):
b2837a08   Goutte   Add three retries...
1245
1246
        abort(400, "No valid targets specified. What are you doing?")

b2837a08   Goutte   Add three retries...
1247
    try:
ea6c8d5d   Goutte   Add interval cons...
1248
        started_at = datetime.datetime.strptime(started_at, FILE_DATE_FMT)
b2837a08   Goutte   Add three retries...
1249
1250
1251
    except:
        abort(400, "Invalid started_at parameter : '%s'." % started_at)
    try:
ea6c8d5d   Goutte   Add interval cons...
1252
        stopped_at = datetime.datetime.strptime(stopped_at, FILE_DATE_FMT)
b2837a08   Goutte   Add three retries...
1253
1254
    except:
        abort(400, "Invalid stopped_at parameter : '%s'." % stopped_at)
ea6c8d5d   Goutte   Add interval cons...
1255
1256
    sta = started_at.strftime(FILE_DATE_FMT)
    sto = stopped_at.strftime(FILE_DATE_FMT)
b2837a08   Goutte   Add three retries...
1257

297a7dfc   Goutte   Add support for i...
1258
1259
1260
1261
1262
    input_slug = get_input_slug_from_query(inp=inp)

    gzip_filename = "%s_%s_%s_%s.tar.gz" % (
        separator.join(targets), input_slug, sta, sto
    )
e18701b6   Goutte   Cache clear (remo...
1263
    local_gzip_file = join(CACHE_DIR, gzip_filename)
2fedd73b   Goutte   Initial implement...
1264
1265

    if not isfile(local_gzip_file):
0511eed7   Goutte   Tarball generatio...
1266
        log.debug("Creating the CSV files for the tarball...")
2fedd73b   Goutte   Initial implement...
1267
        for target_config in targets_configs:
297a7dfc   Goutte   Add support for i...
1268
1269
1270
            filename = "%s_%s_%s_%s.csv" % (
                target_config['slug'], input_slug, sta, sto
            )
e18701b6   Goutte   Cache clear (remo...
1271
            local_csv_file = join(CACHE_DIR, filename)
2fedd73b   Goutte   Initial implement...
1272
1273
            if not isfile(local_csv_file):
                with open(local_csv_file, mode="w+") as f:
297a7dfc   Goutte   Add support for i...
1274
1275
1276
1277
1278
1279
                    f.write(generate_csv_contents(
                        target_slug=target_config['slug'],
                        started_at=started_at,
                        stopped_at=stopped_at,
                        input_slug=input_slug
                    ))
2fedd73b   Goutte   Initial implement...
1280

0511eed7   Goutte   Tarball generatio...
1281
        log.debug("Creating the tarball '%s'..." % local_gzip_file)
2fedd73b   Goutte   Initial implement...
1282
1283
        with tarfile.open(local_gzip_file, "w:gz") as tar:
            for target_config in targets_configs:
297a7dfc   Goutte   Add support for i...
1284
1285
1286
                filename = "%s_%s_%s_%s.csv" % (
                    target_config['slug'], input_slug, sta, sto
                )
e18701b6   Goutte   Cache clear (remo...
1287
                local_csv_file = join(CACHE_DIR, filename)
2fedd73b   Goutte   Initial implement...
1288
1289
1290
                tar.add(local_csv_file, arcname=filename)

    if not isfile(local_gzip_file):
0511eed7   Goutte   Tarball generatio...
1291
        abort(500, "No tarball to serve. Looked at '%s'." % local_gzip_file)
2fedd73b   Goutte   Initial implement...
1292

e18701b6   Goutte   Cache clear (remo...
1293
    return send_from_directory(CACHE_DIR, gzip_filename)
b2837a08   Goutte   Add three retries...
1294

28bb4b28   Goutte   API for the cache...
1295

297a7dfc   Goutte   Add support for i...
1296
1297
@app.route("/<targets>_<inp>_<params>_<started_at>_<stopped_at>.nc")
def download_targets_netcdf(targets, inp, params, started_at, stopped_at):
bc18b96c   Goutte   Implement first (...
1298
    """
4aaf6874   Goutte   Try fixing the ge...
1299
1300
    NOTE : This is not used anymore.
    
bc18b96c   Goutte   Implement first (...
1301
    Grab data and orbit data for the specified `target`,
aa7247d6   Goutte   Generate a CDF fi...
1302
    rearrange it and return it as a NetCDF file.
e18701b6   Goutte   Cache clear (remo...
1303
    `started_at` and `stopped_at` are expected to be UTC.
bc18b96c   Goutte   Implement first (...
1304
1305
1306
1307

    targets: string list of targets' slugs, separated by `-`.
    params: string list of targets' parameters, separated by `-`.
    """
e18701b6   Goutte   Cache clear (remo...
1308
    separator = '-'  # /!\ this char should never be in target's slugs
bc18b96c   Goutte   Implement first (...
1309
1310
1311
1312
1313
1314
1315
1316
1317
    targets = targets.split(separator)
    targets.sort()
    targets_configs = []
    for target in targets:
        if not target:
            abort(400, "Invalid targets format : `%s`." % targets)
        targets_configs.append(get_target_config(target))
    if 0 == len(targets_configs):
        abort(400, "No valid targets specified. What are you doing?")
4aaf6874   Goutte   Try fixing the ge...
1318

bc18b96c   Goutte   Implement first (...
1319
1320
1321
1322
1323
1324
1325
    params = params.split(separator)
    params.sort()
    if 0 == len(params):
        abort(400, "No valid parameters specified. What are you doing?")
    if not is_list_in_list(params, PARAMETERS.keys()):
        abort(400, "Some parameters are not recognized in '%s'." % str(params))

57493104   Goutte   Add the time to t...
1326
    date_fmt = FILE_DATE_FMT
bc18b96c   Goutte   Implement first (...
1327
1328
1329
1330
1331
1332
1333
1334
1335
1336
1337
    try:
        started_at = datetime.datetime.strptime(started_at, date_fmt)
    except:
        abort(400, "Invalid started_at parameter : '%s'." % started_at)
    try:
        stopped_at = datetime.datetime.strptime(stopped_at, date_fmt)
    except:
        abort(400, "Invalid stopped_at parameter : '%s'." % stopped_at)
    sta = started_at.strftime(date_fmt)
    sto = stopped_at.strftime(date_fmt)

297a7dfc   Goutte   Add support for i...
1338
1339
1340
1341
1342
    input_slug = get_input_slug_from_query(inp=inp)

    nc_filename = "%s_%s_%s_%s_%s.nc" % (
        separator.join(targets), separator.join(params), input_slug, sta, sto
    )
e18701b6   Goutte   Cache clear (remo...
1343
    nc_path = join(CACHE_DIR, nc_filename)
bc18b96c   Goutte   Implement first (...
1344
1345
1346
1347
1348

    if not isfile(nc_path):
        log.debug("Creating the NetCDF file '%s'..." % nc_filename)
        nc_handle = Dataset(nc_path, "w", format="NETCDF4")
        try:
ea6c8d5d   Goutte   Add interval cons...
1349
            nc_handle.description = "Model and orbit data for targets"  # todo
bc18b96c   Goutte   Implement first (...
1350
            nc_handle.history = "Created " + time.ctime(time.time())
ea6c8d5d   Goutte   Add interval cons...
1351
            nc_handle.source = "Heliopropa (CDDP)"
bc18b96c   Goutte   Implement first (...
1352
1353
1354
1355
1356
            available_params = list(PROPERTIES)
            for target in targets_configs:
                target_slug = target['slug']
                log.debug("Adding group '%s' to the NetCDF..." % target_slug)
                nc_group = nc_handle.createGroup(target_slug)
297a7dfc   Goutte   Add support for i...
1357
1358
1359
1360
                data = get_data_for_target(
                    target_config=target, input_slug=input_slug,
                    started_at=started_at, stopped_at=stopped_at
                )
bc18b96c   Goutte   Implement first (...
1361
                dkeys = sorted(data)
ceeb2f4a   Goutte   Add the target co...
1362
1363
                dimension = 'dim_'+target_slug
                nc_handle.createDimension(dimension, len(dkeys))
57493104   Goutte   Add the time to t...
1364
1365

                # TIME #
ceeb2f4a   Goutte   Add the target co...
1366
                nc_time = nc_group.createVariable('time', 'i8', (dimension,))
57493104   Goutte   Add the time to t...
1367
1368
1369
1370
1371
1372
1373
1374
1375
1376
1377
1378
                nc_time.units = "hours since 1970-01-01 00:00:00"
                nc_time.calendar = "standard"
                times = []
                for dkey in dkeys:
                    time_as_string = data[dkey][0][:-6]  # remove +00:00 tail
                    date = datetime.datetime.strptime(time_as_string, date_fmt)
                    times.append(date2num(
                        date, units=nc_time.units, calendar=nc_time.calendar
                    ))
                nc_time[:] = times

                # SELECTED PARAMETERS #
bc18b96c   Goutte   Implement first (...
1379
1380
1381
1382
                nc_vars = []
                indices = []
                for param in params:
                    indices.append(available_params.index(param))
ceeb2f4a   Goutte   Add the target co...
1383
                    nc_var = nc_group.createVariable(param, 'f8', (dimension,))
5a6d4498   Goutte   Add a title to ea...
1384
                    nc_var.units = PARAMETERS[param]['units']
bc18b96c   Goutte   Implement first (...
1385
1386
1387
1388
1389
1390
1391
1392
                    nc_vars.append(nc_var)
                for i, nc_var in enumerate(nc_vars):
                    index = indices[i]
                    values = []
                    for dkey in dkeys:
                        dval = data[dkey]
                        values.append(dval[index])
                    nc_var[:] = values
ceeb2f4a   Goutte   Add the target co...
1393
1394

                # ORBIT #
6491a1f1   Goutte   Fix up the bugs l...
1395
                nc_x = nc_group.createVariable('xhee', 'f8', (dimension,))
ceeb2f4a   Goutte   Add the target co...
1396
                nc_x.units = 'Au'
6491a1f1   Goutte   Fix up the bugs l...
1397
                nc_y = nc_group.createVariable('yhee', 'f8', (dimension,))
ceeb2f4a   Goutte   Add the target co...
1398
1399
1400
                nc_y.units = 'Au'
                values_x = []
                values_y = []
6491a1f1   Goutte   Fix up the bugs l...
1401
1402
                index_x = available_params.index('xhee')
                index_y = available_params.index('yhee')
ceeb2f4a   Goutte   Add the target co...
1403
1404
1405
1406
1407
1408
1409
1410
                for dkey in dkeys:
                    dval = data[dkey]
                    values_x.append(dval[index_x])
                    values_y.append(dval[index_y])
                nc_x[:] = values_x
                nc_y[:] = values_y
            log.debug("Writing NetCDF '%s'..." % nc_filename)

d1c44c51   Goutte   Enable Earth
1411
        except Exception:
57493104   Goutte   Add the time to t...
1412
            log.error("Failed to generate NetCDF '%s'." % nc_filename)
d1c44c51   Goutte   Enable Earth
1413
            raise
bc18b96c   Goutte   Implement first (...
1414
1415
1416
1417
1418
1419
        finally:
            nc_handle.close()

    if not isfile(nc_path):
        abort(500, "No NetCDF to serve. Looked at '%s'." % nc_path)

e18701b6   Goutte   Cache clear (remo...
1420
    return send_from_directory(CACHE_DIR, nc_filename)
bc18b96c   Goutte   Implement first (...
1421
1422


297a7dfc   Goutte   Add support for i...
1423
1424
@app.route("/<targets>_<inp>_<started_at>_<stopped_at>.cdf")
def download_targets_cdf(targets, inp, started_at, stopped_at):
aa7247d6   Goutte   Generate a CDF fi...
1425
1426
1427
1428
1429
1430
1431
1432
1433
1434
1435
1436
1437
1438
1439
1440
1441
1442
1443
1444
    """
    Grab data and orbit data for the specified `target`,
    rearrange it and return it as a CDF file.
    `started_at` and `stopped_at` are expected to be UTC.

    targets: string list of targets' slugs, separated by `-`.
    params: string list of targets' parameters, separated by `-`.
    """
    separator = '-'  # /!\ this char should never be in target's slugs
    targets = targets.split(separator)
    targets.sort()
    targets_configs = []
    for target in targets:
        if not target:
            abort(400, "Invalid targets format : `%s`." % targets)
        targets_configs.append(get_target_config(target))
    if 0 == len(targets_configs):
        abort(400, "No valid targets specified. What are you doing?")

    params = PARAMETERS.keys()
aa7247d6   Goutte   Generate a CDF fi...
1445
1446
1447
1448
1449
1450
1451
1452
1453
1454
1455
1456

    try:
        started_at = datetime.datetime.strptime(started_at, FILE_DATE_FMT)
    except:
        abort(400, "Invalid started_at parameter : '%s'." % started_at)
    try:
        stopped_at = datetime.datetime.strptime(stopped_at, FILE_DATE_FMT)
    except:
        abort(400, "Invalid stopped_at parameter : '%s'." % stopped_at)
    sta = started_at.strftime(FILE_DATE_FMT)
    sto = stopped_at.strftime(FILE_DATE_FMT)

297a7dfc   Goutte   Add support for i...
1457
1458
1459
1460
1461
    input_slug = get_input_slug_from_query(inp=inp)

    cdf_filename = "%s_%s_%s_%s.cdf" % (
        separator.join(targets), input_slug, sta, sto
    )
aa7247d6   Goutte   Generate a CDF fi...
1462
1463
1464
1465
    cdf_path = join(CACHE_DIR, cdf_filename)

    if not isfile(cdf_path):
        log.debug("Creating the CDF file '%s'..." % cdf_filename)
604616e4   Goutte   Misc changes from...
1466
        try:
8a48d5fa   Goutte   Make sure spacepy...
1467
            from spacepy import pycdf
4aaf6874   Goutte   Try fixing the ge...
1468
1469
1470
1471
1472
1473
1474
1475
1476
        except ImportError:
            # If spacepy's toolbox is not up-to-date, importing will fail.
            # So, let's update and try again !
            update_spacepy()
            try:
                from spacepy import pycdf
            except ImportError as e:
                log.error("Failed to import pycdf from spacepy : %s" % e)
                raise
2fe06b17   Goutte   Move the ENV dire...
1477
1478
1479
        except Exception as e:
            log.error("Failed to import pycdf from spacepy : %s" % e)
            raise
4aaf6874   Goutte   Try fixing the ge...
1480

8a48d5fa   Goutte   Make sure spacepy...
1481
        try:
952e3d8f   Goutte   Move to another s...
1482
            cdf_handle = pycdf.CDF(cdf_path, masterpath='')
54bb1311   Goutte   Bring back the CM...
1483
1484
            targets_names = ', '.join([t['name'] for t in targets_configs])
            description = "Model and orbit data for %s." % targets_names
952e3d8f   Goutte   Move to another s...
1485
1486
1487
            cdf_handle.attrs['Description'] = description
            cdf_handle.attrs['Author'] = "Heliopropa.irap.omp.eu (CDPP)"
            cdf_handle.attrs['Created'] = str(time.ctime(time.time()))
aa7247d6   Goutte   Generate a CDF fi...
1488

54bb1311   Goutte   Bring back the CM...
1489
1490
1491
1492
            # fixme: Try changing the name from 00 to something relevant
            cdf_handle.attrs['Title'] = "Heliopropa - %s" % targets_names
            #######

aa7247d6   Goutte   Generate a CDF fi...
1493
1494
1495
            available_params = list(PROPERTIES)
            for target in targets_configs:
                target_slug = target['slug']
297a7dfc   Goutte   Add support for i...
1496
1497
1498
1499
                data = get_data_for_target(
                    target_config=target, input_slug=input_slug,
                    started_at=started_at, stopped_at=stopped_at
                )
aa7247d6   Goutte   Generate a CDF fi...
1500
1501
1502
                dkeys = sorted(data)

                values = []
aa7247d6   Goutte   Generate a CDF fi...
1503
                for dkey in dkeys:
952e3d8f   Goutte   Move to another s...
1504
1505
1506
1507
                    time_str = data[dkey][0][:-6]  # remove +00:00 tail
                    date = datetime.datetime.strptime(time_str, FILE_DATE_FMT)
                    values.append(date)
                kt = "%s_time" % target_slug
4aaf6874   Goutte   Try fixing the ge...
1508
                cdf_handle.new(kt, type=pycdf.const.CDF_EPOCH)
952e3d8f   Goutte   Move to another s...
1509
                cdf_handle[kt] = values
4aaf6874   Goutte   Try fixing the ge...
1510
                # cdf_handle[kt].attrs['FIELDNAM'] = "Time since 0 A.D"
aa7247d6   Goutte   Generate a CDF fi...
1511
1512
1513

                for param in params:
                    k = "%s_%s" % (target_slug, param)
4aaf6874   Goutte   Try fixing the ge...
1514
                    # print("PARAM %s" % k)
aa7247d6   Goutte   Generate a CDF fi...
1515
1516
                    values = []
                    i = available_params.index(param)
4aaf6874   Goutte   Try fixing the ge...
1517
                    has_nones = False
aa7247d6   Goutte   Generate a CDF fi...
1518
                    for dkey in dkeys:
4aaf6874   Goutte   Try fixing the ge...
1519
1520
1521
1522
1523
1524
1525
1526
1527
                        value = data[dkey][i]
                        if value is None:
                            has_nones = True
                        values.append(value)
                    if has_nones:
                        # PyCDF hates it when there are Nones.
                        # Since we don't know what value to set instead,
                        # let's skip the param altogether.
                        continue
aa7247d6   Goutte   Generate a CDF fi...
1528
                    cdf_handle[k] = values
952e3d8f   Goutte   Move to another s...
1529
1530
1531
1532
1533
1534
1535
1536
1537
1538
                    attrs = cdf_handle[k].attrs
                    attrs['UNITS'] = PARAMETERS[param]['units']
                    attrs['LABLAXIS'] = PARAMETERS[param]['name']
                    attrs['FIELDNAM'] = PARAMETERS[param]['title']
                    if values:
                        attrs['VALIDMIN'] = min(values)
                        attrs['VALIDMAX'] = max(values)

                kx = "%s_xhee" % target_slug
                ky = "%s_yhee" % target_slug
aa7247d6   Goutte   Generate a CDF fi...
1539
1540
1541
1542
1543
                values_xhee = []
                values_yhee = []
                index_x = available_params.index('xhee')
                index_y = available_params.index('yhee')
                for dkey in dkeys:
391d581c   Goutte   Make the CDF down...
1544
1545
1546
                    value_xhee = data[dkey][index_x]
                    value_yhee = data[dkey][index_y]
                    # We've got some `None`s cropping up in the data sometimes.
4aaf6874   Goutte   Try fixing the ge...
1547
                    # PyCDF does not digest Nones at all.
391d581c   Goutte   Make the CDF down...
1548
1549
1550
1551
1552
                    # While they solve this upstream, let's make an ugly fix!
                    if (value_xhee is not None) and (value_yhee is not None):
                        values_xhee.append(value_xhee)
                        values_yhee.append(value_yhee)
                    else:
4aaf6874   Goutte   Try fixing the ge...
1553
1554
                        values_xhee.append(0)
                        values_yhee.append(0)
391d581c   Goutte   Make the CDF down...
1555
                        log.warn("Orbit data for %s has NaNs." % target_slug)
952e3d8f   Goutte   Move to another s...
1556
1557
1558
1559
                cdf_handle[kx] = values_xhee
                cdf_handle[ky] = values_yhee
                cdf_handle[kx].attrs['UNITS'] = 'Au'
                cdf_handle[ky].attrs['UNITS'] = 'Au'
aa7247d6   Goutte   Generate a CDF fi...
1560
1561

            log.debug("Writing CDF '%s'..." % cdf_filename)
952e3d8f   Goutte   Move to another s...
1562
1563
            cdf_handle.close()
            log.debug("Wrote CDF '%s'." % cdf_filename)
aa7247d6   Goutte   Generate a CDF fi...
1564
1565
1566

        except Exception as e:
            log.error("Failed to generate CDF '%s'." % cdf_filename)
952e3d8f   Goutte   Move to another s...
1567
1568
            if isfile(cdf_path):
                removefile(cdf_path)
aa7247d6   Goutte   Generate a CDF fi...
1569
1570
            raise

aa7247d6   Goutte   Generate a CDF fi...
1571
1572
1573
1574
1575
1576
    if not isfile(cdf_path):
        abort(500, "No CDF to serve. Looked at '%s'." % cdf_path)

    return send_from_directory(CACHE_DIR, cdf_filename)


11d86851   Goutte   Add support for s...
1577
1578
1579
1580
1581
1582
1583
1584
@app.route("/<target>_auroral_catalog.csv")
def download_auroral_catalog_csv(target):
    tc = validate_tap_target_config(target)
    log.debug("Requesting auroral emissions CSV for %s..." % tc['name'])

    filename = "%s_auroral_catalog.csv" % (target)
    local_csv_file = join(CACHE_DIR, filename)

11d86851   Goutte   Add support for s...
1585
1586
1587
1588
1589
1590
1591
1592
1593
1594
1595
1596
1597
1598
1599
1600
1601
1602
1603
1604
1605
1606
1607
1608
1609
1610
1611
1612
1613
1614
1615
1616
1617
1618
1619
1620
1621
1622
1623
1624
1625
1626
1627
1628
1629
1630
    target_name = tc['tap']['target_name']
    emissions = retrieve_auroral_emissions(target_name)

    # Be careful with regexes in python 2 ; best always use the ^$
    thumbnail_url_filter = re.compile("^.*proc(?:_small)?\\.(?:jpe?g|png|webp|gif|bmp|tiff)$")

    # Filter the emissions
    def _keep_emission(emission):
        ok = thumbnail_url_filter.match(emission['thumbnail_url'])
        # print("ok", ok, emission['thumbnail_url'])
        return bool(ok)

    emissions = [e for e in emissions if _keep_emission(e)]

    header = ('time_min', 'time_max', 'thumbnail_url', 'external_link')
    if len(emissions):
        header = emissions[0].keys()
    si = StringIO.StringIO()
    cw = csv_dict_writer(si, fieldnames=header)
    cw.writeheader()
    # 'time_min', 'time_max', 'thumbnail_url', 'external_link'
    #cw.writerow(head)

    log.debug("Writing auroral emissions CSV for %s..." % tc['name'])
    cw.writerows(emissions)

    log.info("Generated auroral emissions CSV contents for %s." % tc['name'])
    return si.getvalue()

    # if not isfile(local_csv_file):
    #     abort(500, "Could not cache CSV file at '%s'." % local_csv_file)
    #
    # return send_from_directory(CACHE_DIR, filename)




@app.route("/test/auroral/<target>")
def test_auroral_emissions(target):
    tc = validate_tap_target_config(target)
    target_name = tc['tap']['target_name']
    retrieved = retrieve_auroral_emissions(target_name)

    return "%d results:\n%s" % (len(retrieved), str(retrieved))


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# API #########################################################################

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@app.route("/cache/clear")
def cache_clear():
    """
    Removes all files from the cache.
    Note: It also removes the .gitkeep file. Not a problem for prod.
    """
    removed_files = remove_all_files(CACHE_DIR)
    count = len(removed_files)
    return "Cache cleared! Removed %d file%s." \
           % (count, 's' if count != 1 else '')


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@app.route("/cache/cleanup")
def cache_cleanup():
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    """
    Removes all files from the cache that are older than roughly one month.
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    Note: It also removes the .gitkeep file. Maybe it should not, but hey.
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    """
    a_month_ago = datetime.datetime.now() - datetime.timedelta(days=32)
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    removed_files = remove_files_created_before(a_month_ago, CACHE_DIR)
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    count = len(removed_files)
    return "Cache cleaned! Removed %d old file%s." \
           % (count, 's' if count != 1 else '')
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@app.route("/cache/warmup")
def cache_warmup():
    """
    Warms up the cache for the current day.
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    """
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    warmup_started_at = datetime.datetime.now()
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    sta, sto = get_interval_from_query()
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    inp = config['defaults']['input_slug']  # default input, maybe warm them all up ?
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    targets = get_active_targets()
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    targets_slugs = [target['slug'] for target in targets]
    targets_slugs.sort()
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    update_spacepy()
    for target in targets:
        download_target_csv(target['slug'], inp, sta, sto)
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    download_targets_cdf('-'.join(targets_slugs), inp, sta, sto)
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    warmup_ended_at = datetime.datetime.now()
    warmup_timedelta = warmup_ended_at - warmup_started_at

    return "Done in %s." % str(warmup_timedelta)
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@app.route("/log")
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@app.route("/log.html")
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def log_show():
    with open(LOG_FILE, 'r') as f:
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        contents = f.read()
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    return "<pre>" + contents + "</pre>"
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@app.route("/log/clear")
def log_clear():
    with open(LOG_FILE, 'w') as f:
        f.truncate()
    return "Log cleared successfully."


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# DEV TOOLS ###################################################################

# @app.route("/inspect")
# def analyze_cdf():
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#     """
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#     For debug purposes.
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#     """
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#     cdf_to_inspect = get_path("../res/dummy.nc")
#     cdf_to_inspect = get_path("../res/dummy_jupiter_coordinates.nc")
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#
#     si = StringIO.StringIO()
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#     cw = csv.DictWriter(si, fieldnames=['Name', 'Shape', 'Length'])
#     cw.writeheader()
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#
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#     # Time, StartTime, StopTime, V, B, N, T, Delta_angle, P_dyn, QualityFlag
#     cdf_handle = Dataset(cdf_to_inspect, "r", format="NETCDF4")
#     for variable in cdf_handle.variables:
#         v = cdf_handle.variables[variable]
#         cw.writerow({
#             'Name': variable,
#             'Shape': v.shape,
#             'Length': v.size,
#         })
#     cdf_handle.close()
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#
#     return si.getvalue()


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# MAIN ########################################################################

if __name__ == "__main__":
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    # Debug mode is on, as the production server does not use this but run.wsgi
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    extra_files = [get_path('../config.yml')]
    app.run(debug=True, extra_files=extra_files)