Blame view

web/run.py 9.25 KB
9390ec89   Goutte   Initial experimen...
1
2
3
import random
import datetime
import StringIO
c42fea3a   Goutte   Rework the CSS wi...
4
from math import sqrt
9390ec89   Goutte   Initial experimen...
5
6
7
8
9
10
11
12
13

from os import listdir, environ
from os.path import isfile, join, abspath, dirname

import csv
from pprint import pprint
from csv import writer as csv_writer
from yaml import load as yaml_load
from flask import Flask
61179cdc   Goutte   Initial work on t...
14
from flask import redirect, url_for, send_from_directory, abort
9390ec89   Goutte   Initial experimen...
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
from flask import request
from jinja2 import Environment, FileSystemLoader
from netCDF4 import Dataset

# from model.Config import Config
# from model.News import NewsCollection, News


# PATH RELATIVITY #############################################################

THIS_DIRECTORY = dirname(abspath(__file__))


def get_path(relative_path):
    return abspath(join(THIS_DIRECTORY, relative_path))


# COLLECT GLOBAL INFORMATION FROM SOURCES #####################################

# VERSION
with open(get_path('../VERSION'), 'r') as version_file:
    version = version_file.read().strip()

# CONFIG
with open(get_path('../config.yml'), 'r') as config_file:
    config = yaml_load(config_file.read())


# SETUP FLASK ENGINE ##########################################################

app = Flask(__name__, root_path=THIS_DIRECTORY)
app.debug = environ.get('DEBUG') == 'true'


# SETUP JINJA2 TEMPLATE ENGINE ################################################

def static_global(filename):
    return url_for('static', filename=filename)


def shuffle_filter(seq):
    """
    This shuffles the sequence it is applied to.
    'tis a failure of jinja2 to not provide a shuffle filter by default.
    """
    try:
        result = list(seq)
        random.shuffle(result)
        return result
    except:
        return seq


def markdown_filter(value, nl2br=False, p=True):
    """
    nl2br: set to True to replace line breaks with <br> tags
    p: set to False to remove the enclosing <p></p> tags
    """
    from markdown import markdown
    from markdown.extensions.nl2br import Nl2BrExtension
    from markdown.extensions.abbr import AbbrExtension
    extensions = [AbbrExtension()]
    if nl2br is True:
        extensions.append(Nl2BrExtension())
    markdowned = markdown(value, output_format='html5', extensions=extensions)
    if p is False:
        markdowned = markdowned.replace(r"<p>", "").replace(r"</p>", "")
    return markdowned


tpl_engine = Environment(loader=FileSystemLoader([get_path('view')]),
                         trim_blocks=True,
                         lstrip_blocks=True)

tpl_engine.globals.update(
    url_for=url_for,
    static=static_global,
)

tpl_engine.filters['markdown'] = markdown_filter
tpl_engine.filters['md'] = markdown_filter
tpl_engine.filters['shuffle'] = shuffle_filter

tpl_global_vars = {
    'request': request,
    'version': version,
    'config': config,
    'now': datetime.datetime.now(),
}


# HELPERS #####################################################################

def render_view(view, context=None):
    """
    A simple helper to render [view] template with [context] vars.
    It automatically adds the global template vars defined above, too.
    It returns a string, usually the HTML contents to display.
    """
    context = {} if context is None else context
    return tpl_engine.get_template(view).render(
        dict(tpl_global_vars.items() + context.items())
    )


# def render_page(page, title="My Page", context=None):
#     """
#     A simple helper to render the md_page.html template with [context] vars &
#     the additional contents of `page/[page].md` in the `md_page` variable.
#     It automagically adds the global template vars defined above, too.
#     It returns a string, usually the HTML contents to display.
#     """
#     if context is None:
#         context = {}
#     context['title'] = title
#     context['md_page'] = ''
#     with file(get_path('page/%s.md' % page)) as f:
#         context['md_page'] = f.read()
#     return tpl_engine.get_template('md_page.html').render(
#         dict(tpl_global_vars.items() + context.items())
#     )

2d2af24b   Goutte   Add a basic orbit...
137
138
139
140
141
142
143
def datetime_from_list(time_list):
    # Day Of Year starts at 0, but for our datetime parser it starts at 1
    doy = '{:03d}'.format(int(''.join(time_list[4:7])) + 1)
    return datetime.datetime.strptime(
        "%s%s%s" % (''.join(time_list[0:4]), doy, ''.join(time_list[7:])),
        "%Y%j%H%M%S%f"
    )
9390ec89   Goutte   Initial experimen...
144

ce8af118   Goutte   Fix the favicon.
145

9390ec89   Goutte   Initial experimen...
146
147
# ROUTING #####################################################################

ce8af118   Goutte   Fix the favicon.
148
149
150
151
152
153
154
155
@app.route('/favicon.ico')
def favicon():
    return send_from_directory(
        join(app.root_path, 'static', 'img'),
        'favicon.ico', mimetype='image/vnd.microsoft.icon'
    )


9390ec89   Goutte   Initial experimen...
156
157
158
159
@app.route("/")
@app.route("/home.html")
@app.route("/index.html")
def home():
a79c5268   Goutte   Add probes and co...
160
161
162
163
164
165
    return render_view('home.html.jinja2', {
        'sources': config['sources'],
        'planets': [s for s in config['sources'] if s['type'] == 'planet'],
        'probes':  [s for s in config['sources'] if s['type'] == 'probe'],
        'comets':  [s for s in config['sources'] if s['type'] == 'comet'],
    })
9390ec89   Goutte   Initial experimen...
166
167
168
169
170


@app.route("/inspect")
def analyze_cdf():
    cdf_to_inspect = get_path("../res/dummy.nc")
2d2af24b   Goutte   Add a basic orbit...
171
    cdf_to_inspect = get_path("../res/dummy_jupiter_coordinates.nc")
9390ec89   Goutte   Initial experimen...
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201

    si = StringIO.StringIO()
    cw = csv.DictWriter(si, fieldnames=['Name', 'Shape', 'Length'])
    cw.writeheader()

    # Time, StartTime, StopTime, V, B, N, T, Delta_angle, P_dyn, QualityFlag
    cdf_handle = Dataset(cdf_to_inspect, "r", format="NETCDF4")
    for variable in cdf_handle.variables:
        v = cdf_handle.variables[variable]
        cw.writerow({
            'Name': variable,
            'Shape': v.shape,
            'Length': v.size,
        })
    cdf_handle.close()

    return si.getvalue()


@app.route("/test.csv")
def get_csv():
    si = StringIO.StringIO()
    cw = csv_writer(si)

    # Time, StartTime, StopTime, V, B, N, T, Delta_angle, P_dyn, QualityFlag
    cdf_handle = Dataset(get_path("../res/dummy.nc"), "r", format="NETCDF4")
    # YYYY DOY HH MM SS .ms
    times = cdf_handle.variables['Time']
    data_v = cdf_handle.variables['V']
    data_b = cdf_handle.variables['B']
a79c5268   Goutte   Add probes and co...
202
203
    data_t = cdf_handle.variables['T']
    data_n = cdf_handle.variables['N']
9390ec89   Goutte   Initial experimen...
204
    data_p = cdf_handle.variables['P_dyn']
a79c5268   Goutte   Add probes and co...
205
    data_a = cdf_handle.variables['Delta_angle']
c42fea3a   Goutte   Rework the CSS wi...
206
207
208
    cw.writerow((
        'time',
        'vrad', 'vtan', 'vlen',
a79c5268   Goutte   Add probes and co...
209
        'magn', 'temp', 'pdyn', 'dens', 'angl'
c42fea3a   Goutte   Rework the CSS wi...
210
    ))
a79c5268   Goutte   Add probes and co...
211
212
    for time, datum_v, datum_b, datum_t, datum_p, datum_n, datum_a in \
            zip(times, data_v, data_b, data_t, data_n, data_p, data_a):
c42fea3a   Goutte   Rework the CSS wi...
213
214
        vrad = datum_v[0]
        vtan = datum_v[1]
9390ec89   Goutte   Initial experimen...
215
        cw.writerow((
2d2af24b   Goutte   Add a basic orbit...
216
            datetime_from_list(time).strftime("%Y-%m-%dT%H:%M:%S+00:00"),
c42fea3a   Goutte   Rework the CSS wi...
217
            vrad, vtan, sqrt(vrad * vrad + vtan * vtan),
a79c5268   Goutte   Add probes and co...
218
            datum_b, datum_t, datum_n, datum_p, datum_a
61179cdc   Goutte   Initial work on t...
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
        ))
    cdf_handle.close()

    return si.getvalue()


@app.route("/<orbiter>_data.csv")
def get_orbiter_csv(orbiter):
    # http://cdpp1.cesr.fr/BASE/DDService/getDataUrl.php?dataSet=tao_ros_sw&StartTime=2014-02-23T10:00&StopTime=2016-02-24T23:59
    # Process input parameters
    if orbiter not in config['models']:
        abort(400, "Invalid orbiter '%s'." % orbiter)
    date_fmt = "%Y-%m-%dT%H:%M:%S"
    started_at = request.args.get('started_at')
    try:
        started_at = datetime.datetime.strptime(started_at, date_fmt)
    except:
        abort(400, "Invalid started_at parameter : '%s'." % started_at)
    stopped_at = request.args.get('stopped_at')
    try:
        stopped_at = datetime.datetime.strptime(stopped_at, date_fmt)
    except:
        abort(400, "Invalid stopped_at parameter : '%s'." % stopped_at)

    # Grab the list of netCDF files from Myriam's API todo
a79c5268   Goutte   Add probes and co...
244
    #
61179cdc   Goutte   Initial work on t...
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268

    si = StringIO.StringIO()
    cw = csv_writer(si)

    # Time, StartTime, StopTime, V, B, N, T, Delta_angle, P_dyn, QualityFlag
    cdf_handle = Dataset(get_path("../res/dummy.nc"), "r", format="NETCDF4")

    # YYYY DOY HH MM SS .ms
    times = cdf_handle.variables['Time']
    data_v = cdf_handle.variables['V']
    data_b = cdf_handle.variables['B']
    data_p = cdf_handle.variables['P_dyn']
    cw.writerow((
        'time',
        'vrad', 'vtan', 'vlen',
        'magn', 'pdyn'
    ))
    for time, datum_v, datum_b, datum_p in zip(times, data_v, data_b, data_p):
        vrad = datum_v[0]
        vtan = datum_v[1]
        cw.writerow((
            datetime_from_list(time).strftime("%Y-%m-%dT%H:%M:%S+00:00"),
            vrad, vtan, sqrt(vrad * vrad + vtan * vtan),
            datum_b, datum_p
9390ec89   Goutte   Initial experimen...
269
270
271
272
273
        ))
    cdf_handle.close()

    return si.getvalue()

2d2af24b   Goutte   Add a basic orbit...
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293

@app.route("/astral_coordinates.csv")
def get_astral_coordinates_csv():
    si = StringIO.StringIO()
    cw = csv_writer(si)

    # Time, StartTime, StopTime, XYZ_HCI, XYZ_IAU_SUN, XYZ_HEE
    cdf_handle = Dataset(get_path("../res/dummy_jupiter_coordinates.nc"), "r", format="NETCDF4")
    times = cdf_handle.variables['Time']
    data_xyz_hci = cdf_handle.variables['XYZ_HCI']
    cw.writerow(('time', 'x_hci', 'y_hci'))
    for time, datum_xyz_hci in zip(times, data_xyz_hci):
        cw.writerow((
            datetime_from_list(time).strftime("%Y-%m-%dT%H:%M:%S+00:00"),
            datum_xyz_hci[0], datum_xyz_hci[1]
        ))
    cdf_handle.close()

    return si.getvalue()

9390ec89   Goutte   Initial experimen...
294
295
296
297
298
299
# MAIN ########################################################################

if __name__ == "__main__":
    # Debug mode on, as the production server does not use this.
    extra_files = [get_path('../config.yml')]
    app.run(debug=True, extra_files=extra_files)