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web/run.py 58.6 KB
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# coding=utf-8

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import StringIO
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import datetime
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import gzip
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import json
import logging
import random
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import tarfile
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import time
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import urllib
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import requests
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import re  # regex
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from csv import writer as csv_writer, DictWriter as csv_dict_writer
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from math import sqrt, isnan
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from os import environ, remove as removefile
from os.path import isfile, join, abspath, dirname

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# (i) Just ignore the requirements warning, we already require `dateutils`.
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from dateutil.relativedelta import relativedelta
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from dateutil import parser as dateparser

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from flask import Flask
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from flask import request
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from flask import url_for, send_from_directory, abort as abort_flask
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from jinja2 import Environment, FileSystemLoader, Markup
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from yaml import load as yaml_load
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from netCDF4 import Dataset, date2num
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# PATH RELATIVITY #############################################################

THIS_DIRECTORY = dirname(abspath(__file__))


def get_path(relative_path):
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    """Get an absolute path from the relative path to this script directory."""
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    return abspath(join(THIS_DIRECTORY, relative_path))


# COLLECT GLOBAL INFORMATION FROM SOURCES #####################################

# VERSION
with open(get_path('../VERSION'), 'r') as version_file:
    version = version_file.read().strip()

# CONFIG
with open(get_path('../config.yml'), 'r') as config_file:
    config = yaml_load(config_file.read())

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FILE_DATE_FMT = "%Y-%m-%dT%H:%M:%S"
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MOMENT_DATE_FMT = "%Y-%m-%dT%H:%M:%SZ"
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CME_DATE_FMT = "%Y-%m-%dT%H:%MZ"
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# Are we on the SSA instance for ESA?
SSA = environ.get('SSA') == 'true'
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DEBUG = environ.get('DEBUG') == 'true'
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# SSA = True
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# LOGGING #####################################################################

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LOG_FILE = get_path('run.log')

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log = logging.getLogger("HelioPropa")
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if DEBUG:
    log.setLevel(logging.DEBUG)
else:
    log.setLevel(logging.ERROR)
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logHandler = logging.FileHandler(LOG_FILE)
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logHandler.setFormatter(logging.Formatter(
    "%(asctime)s - %(levelname)s - %(message)s"
))
log.addHandler(logHandler)
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# HARDCODED CONFIGURATION #####################################################

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ASTRONOMICAL_UNIT_IN_KM = 1.496e8

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# Absolute path to the installed CDF library from https://cdf.gsfc.nasa.gov/
CDF_LIB = '/usr/local/lib/libcdf'

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# Absolute path to the data cache directory
CACHE_DIR = get_path('../cache')

# These two configs are not in the YAML config because adding a new parameter
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# will not work as-is, you'd have to edit some netcdf-related code.
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# The slugs of the available parameters in the generated CSV files.
# The order matters. If you change this you also need to change the
# innermost loop of `get_data_for_target`.
# The javascript knows the targets' properties under these names.
PROPERTIES = ('time', 'vrad', 'vtan', 'vtot', 'btan', 'temp', 'pdyn', 'dens',
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              'atse', 'xhee', 'yhee')
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# The parameters that the users can handle.
# The slug MUST be one of the properties above.
PARAMETERS = {
    'pdyn': {
        'slug': 'pdyn',
        'name': 'Dyn. Pressure',
        'title': 'The dynamic pressure.',
        'units': 'nPa',
        'active': True,
        'position': 10,
    },
    'vtot': {
        'slug': 'vtot',
        'name': 'Velocity',
        'title': 'The velocity of the particles.',
        'units': 'km/s',
        'active': False,
        'position': 20,
    },
    'btan': {
        'slug': 'btan',
        'name': 'B Tangential',
        'title': 'B Tangential.',
        'units': 'nT',
        'active': False,
        'position': 30,
    },
    'temp': {
        'slug': 'temp',
        'name': 'Temperature',
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        'title': 'The temperature.',
        'units': 'eV',
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        'active': False,
        'position': 40,
    },
    'dens': {
        'slug': 'dens',
        'name': 'Density',
        'title': 'The density N.',
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        'units': 'cm^-3',
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        'active': False,
        'position': 50,
    },
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    'atse': {
        'slug': 'atse',
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        'name': 'Angle T-S-E',
        'title': 'Angle Target-Sun-Earth.',
        'units': 'deg',
        'active': False,
        'position': 60,
    },
}


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# SETUP ENVIRONMENT ###########################################################
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environ['SPACEPY'] = CACHE_DIR
environ['CDF_LIB'] = CDF_LIB


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# SETUP FLASK ENGINE ##########################################################

app = Flask(__name__, root_path=THIS_DIRECTORY)
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app.debug = DEBUG
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if app.debug:
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    log.info("Starting Flask app IN DEBUG MODE...")
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else:
    log.info("Starting Flask app...")
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def handle_error(e):
    log.error(e)
    return str(e)  # wish we could use the default error renderer here

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app.register_error_handler(Exception, handle_error)


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# SETUP JINJA2 TEMPLATE ENGINE ################################################

def static_global(filename):
    return url_for('static', filename=filename)


def shuffle_filter(seq):
    """
    This shuffles the sequence it is applied to.
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    Jinja2 _should_ provide this.
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    """
    try:
        result = list(seq)
        random.shuffle(result)
        return result
    except:
        return seq


def markdown_filter(value, nl2br=False, p=True):
    """
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    Converts markdown into html.
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    nl2br: set to True to replace line breaks with <br> tags
    p: set to False to remove the enclosing <p></p> tags
    """
    from markdown import markdown
    from markdown.extensions.nl2br import Nl2BrExtension
    from markdown.extensions.abbr import AbbrExtension
    extensions = [AbbrExtension()]
    if nl2br is True:
        extensions.append(Nl2BrExtension())
    markdowned = markdown(value, output_format='html5', extensions=extensions)
    if p is False:
        markdowned = markdowned.replace(r"<p>", "").replace(r"</p>", "")
    return markdowned


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_js_escapes = {
        '\\': '\\u005C',
        '\'': '\\u0027',
        '"': '\\u0022',
        '>': '\\u003E',
        '<': '\\u003C',
        '&': '\\u0026',
        '=': '\\u003D',
        '-': '\\u002D',
        ';': '\\u003B',
        u'\u2028': '\\u2028',
        u'\u2029': '\\u2029'
}
# Escape every ASCII character with a value less than 32.
_js_escapes.update(('%c' % z, '\\u%04X' % z) for z in xrange(32))


def escapejs_filter(value):
    escaped = []
    for letter in value:
        if letter in _js_escapes:
            escaped.append(_js_escapes[letter])
        else:
            escaped.append(letter)

    return Markup("".join(escaped))

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tpl_engine = Environment(loader=FileSystemLoader([get_path('view')]),
                         trim_blocks=True,
                         lstrip_blocks=True)

tpl_engine.globals.update(
    url_for=url_for,
    static=static_global,
)

tpl_engine.filters['markdown'] = markdown_filter
tpl_engine.filters['md'] = markdown_filter
tpl_engine.filters['shuffle'] = shuffle_filter
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tpl_engine.filters['escapejs'] = escapejs_filter
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tpl_global_vars = {
    'request': request,
    'version': version,
    'config': config,
    'now': datetime.datetime.now(),
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    'is_esa': SSA,
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}


# HELPERS #####################################################################

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def abort(code, message):
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    log.error("Abort: " + message)
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    abort_flask(code, message)


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def render_view(view, context=None):
    """
    A simple helper to render [view] template with [context] vars.
    It automatically adds the global template vars defined above, too.
    It returns a string, usually the HTML contents to display.
    """
    context = {} if context is None else context
    return tpl_engine.get_template(view).render(
        dict(tpl_global_vars.items() + context.items())
    )


# def render_page(page, title="My Page", context=None):
#     """
#     A simple helper to render the md_page.html template with [context] vars &
#     the additional contents of `page/[page].md` in the `md_page` variable.
#     It automagically adds the global template vars defined above, too.
#     It returns a string, usually the HTML contents to display.
#     """
#     if context is None:
#         context = {}
#     context['title'] = title
#     context['md_page'] = ''
#     with file(get_path('page/%s.md' % page)) as f:
#         context['md_page'] = f.read()
#     return tpl_engine.get_template('md_page.html').render(
#         dict(tpl_global_vars.items() + context.items())
#     )

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def is_list_in_list(needle, haystack):
    for n in needle:
        if n not in haystack:
            return False
    return True


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def round_time(dt=None, round_to=60):
    """
    Round a datetime object to any time laps in seconds
    dt : datetime.datetime object, default now.
    roundTo : Closest number of seconds to round to, default 1 minute.
    """
    if dt is None:
        dt = datetime.datetime.now()
    seconds = (dt.replace(tzinfo=None) - dt.min).seconds
    rounding = (seconds + round_to / 2) // round_to * round_to
    return dt + datetime.timedelta(0, rounding-seconds, -dt.microsecond)


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def datetime_from_list(time_list):
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    """
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    Datetimes in retrieved CDFs are stored as lists of numbers,
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    with DayOfYear starting at 0. We want it starting at 1 because it's what
    vendor parsers use, both in python and javascript.
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    """
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    # Day Of Year starts at 0, but for our datetime parser it starts at 1
    doy = '{:03d}'.format(int(''.join(time_list[4:7])) + 1)
    return datetime.datetime.strptime(
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        "%s%s%s" % (''.join(time_list[0:4]), doy, ''.join(time_list[7:-1])),
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        "%Y%j%H%M%S%f"
    )
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def get_local_filename(url):
    """
    Build the local cache filename for the distant file
    :param url: string
    :return: string
    """
    from slugify import slugify
    n = len('http://')
    if url.startswith('https'):
        n += 1
    s = url[n:]
    return slugify(s)


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def get_target_config(slug):
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    for s in config['targets']:  # dumb
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        if s['slug'] == slug:
            return s
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    raise Exception("No target found in configuration for '%s'." % slug)
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def check_target_config(slug):
    get_target_config(slug)


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def get_active_targets():
    all_targets = config['targets']
    return [t for t in all_targets if not ('locked' in t and t['locked'])]


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def validate_tap_target_config(target):
    tc = get_target_config(target)
    if 'tap' not in tc:
        raise Exception("No `tap` configuration for target `%s`." % target)
    if 'target_name' not in tc['tap']:
        raise Exception("No `target_name` in the `tap` configuration for target `%s`." % target)
    return tc


# Using pyvo would be best.
# def retrieve_auroral_emissions_vopy(target_name):
#     api_url = "http://voparis-tap.obspm.fr/__system__/tap/run/tap/sync"
#     import pyvo as vo
#     service = vo.dal.TAPService(api_url)
#     # … can't figure out how to install pyvo and spacepy alongside (forking?)


def retrieve_auroral_emissions(target_name, d_started_at=None, d_stopped_at=None):
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    """
    Work In Progress.
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    :param target_name: You should probably not let users define this value,
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                        as our sanitizing for ADQL may not be 100% safe.
                        Use values from YAML configuration, instead.
                        Below is a list of the ids we found to be existing.
                        > SELECT DISTINCT target_name FROM apis.epn_core
                        - Mars
                        - MERCURY
                        - Jupiter
                        - Titan
                        - Io
                        - VENUS
                        - Ganymede
                        - Uranus
                        - Callisto
                        - Europa
                        - Saturn
    :return: 
    """
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    # Try out the form
    # http://voparis-tap-planeto.obspm.fr/__system__/adql/query/form

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    api_url = "http://voparis-tap.obspm.fr/__system__/tap/run/tap/sync"
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    if d_started_at is None:
        d_started_at = datetime.datetime.now()
        t_started_at = time.mktime(d_started_at.timetuple()) - 3600 * 24 * 365 * 2
        # t_started_at = 1
    else:
        t_started_at = time.mktime(d_started_at.timetuple())

    if d_stopped_at is None:
        d_stopped_at = datetime.datetime.now()
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    t_stopped_at = time.mktime(d_stopped_at.timetuple())

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    def timestamp_to_jday(timestamp):
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        return timestamp / 86400.0 + 2440587.5

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    def jday_to_timestamp(jday):
        return (jday - 2440587.5) * 86400.0

    def jday_to_datetime(jday):
        return datetime.datetime.utcfromtimestamp(jday_to_timestamp(jday))

    # SELECT DISTINCT dataproduct_type FROM apis.epn_core
    # > im sp sc

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    query = """
SELECT
  time_min,
  time_max,
  thumbnail_url,
  external_link
FROM apis.epn_core
WHERE target_name='{target_name}'
AND   dataproduct_type='im'
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AND   time_min >= {jday_start}
AND   time_min <= {jday_stop}
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ORDER BY time_min, granule_gid
""".format(
        target_name=target_name.replace("'", "\\'"),
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        jday_start=timestamp_to_jday(t_started_at),
        jday_stop=timestamp_to_jday(t_stopped_at)
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    )

#     query = """
# SELECT DISTINCT target_name FROM apis.epn_core
# """

    try:
        response = requests.post(api_url, {
            'REQUEST': 'doQuery',
            'LANG':    'ADQL',
            'QUERY':   query,
            'TIMEOUT': '30',
            'FORMAT':  'VOTable/td'
        })

        response_xml = response.text

        import xml.etree.ElementTree as ET
        root = ET.fromstring(response_xml)
        namespaces = {'vo': 'http://www.ivoa.net/xml/VOTable/v1.3'}
        rows_xpath = "./vo:RESOURCE/vo:TABLE/vo:DATA/vo:TABLEDATA/vo:TR"
        rows = []
        for row in root.findall(rows_xpath, namespaces):
            rows.append({
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                'time_min': jday_to_datetime(float(row[0].text)),
                'time_max': jday_to_datetime(float(row[1].text)),
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                'thumbnail_url': row[2].text,
                'external_link': row[3].text,
            })

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        # print("Auroral emission query")
        # print(query)
        # print("Auroral emission rows")
9f57dceb   Goutte   Add half the brid...
478
        # print(rows)
81960a4f   Goutte   Fix an issue repo...
479

9f57dceb   Goutte   Add half the brid...
480
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        return rows
    except Exception as e:
        print("Failed to retrieve auroral emissions :")
        print(e)

    # print(query)


180d7d97   Goutte   Refactor heavily.
488
def retrieve_amda_netcdf(orbiter, what, started_at, stopped_at):
8644387c   Goutte   Use real data.
489
    """
91c3d52d   Goutte   Add more logs.
490
491
    Handles remote querying AMDA's API for URLs, and then downloading,
    extracting and caching the netCDF files.
8644387c   Goutte   Use real data.
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    :param orbiter: key of the source in the YAML config
    :param what: either 'model' or 'orbit', a key in the config of the source
    :param started_at:
    :param stopped_at:
    :return: a list of local file paths to netCDF (.nc) files
    """

    url = config['amda'].format(
        dataSet=what,
        startTime=started_at.isoformat(),
        stopTime=stopped_at.isoformat()
    )
c50cc9d8   Goutte   Continue fixing.
504
    log.info("Fetching remote gzip files list at '%s'." % url)
b2837a08   Goutte   Add three retries...
505
506
    retries = 0
    success = False
92abc15b   Goutte   Mistrust the API ...
507
    errors = []
b2837a08   Goutte   Add three retries...
508
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515
    remote_gzip_files = []
    while not success and retries < 3:
        try:
            response = urllib.urlopen(url)
            remote_gzip_files = json.loads(response.read())
            if not remote_gzip_files:
                raise Exception("Failed to fetch data at '%s'." % url)
            if remote_gzip_files == 'NODATASET':
92abc15b   Goutte   Mistrust the API ...
516
517
518
                raise Exception("API says there's no dataset at '%s'." % url)
            if remote_gzip_files == 'ERROR':
                raise Exception("API returned an error at '%s'." % url)
077980eb   Goutte   Improve availabil...
519
            if remote_gzip_files == ['OUTOFTIME']:  # it happens
80352490   Goutte   Multi model suppo...
520
521
                return []
                # raise Exception("API says it's out of time at '%s'." % url)
b2837a08   Goutte   Add three retries...
522
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524
            success = True
        except Exception as e:
            log.warn("Failed (%d/3) '%s' : %s" % (retries+1, url, e.message))
92abc15b   Goutte   Mistrust the API ...
525
526
            remote_gzip_files = []
            errors.append(e)
b2837a08   Goutte   Add three retries...
527
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529
        finally:
            retries += 1
    if not remote_gzip_files:
b52b494b   Goutte   Add even more logs.
530
        log.error("Failed to retrieve data from AMDA.")
91c3d52d   Goutte   Add more logs.
531
532
        log.error("Failed to fetch gzip files list for %s at '%s' : %s" %
                   (orbiter, url, errors))
08abc2d4   Goutte   Remove duplicate ...
533
534
535
536
        abort(400, "Failed to fetch gzip files list for %s at '%s' : %s" %
                   (orbiter, url, errors))
    else:
        remote_gzip_files = list(set(remote_gzip_files))
9bfa6c42   Goutte   More bug hunting.
537
538

    log.debug("Fetched remote gzip files list : %s." % str(remote_gzip_files))
8644387c   Goutte   Use real data.
539

8644387c   Goutte   Use real data.
540
541
    local_gzip_files = []
    for remote_gzip_file in remote_gzip_files:
077980eb   Goutte   Improve availabil...
542
543
544
        # hotfixes to remove when fixed upstream @Myriam
        if remote_gzip_file in ['OUTOFTIME', 'ERROR']:
            continue  # sometimes half the response is okay, the other not
8644387c   Goutte   Use real data.
545
        if remote_gzip_file.endswith('/.gz'):
80352490   Goutte   Multi model suppo...
546
            continue  # this is just a plain bug
8644387c   Goutte   Use real data.
547
        remote_gzip_file = remote_gzip_file.replace('cdpp1', 'cdpp', 1)
077980eb   Goutte   Improve availabil...
548
        ################################################
e18701b6   Goutte   Cache clear (remo...
549
        local_gzip_file = join(CACHE_DIR, get_local_filename(remote_gzip_file))
8644387c   Goutte   Use real data.
550
551
        local_gzip_files.append(local_gzip_file)
        if not isfile(local_gzip_file):
9bfa6c42   Goutte   More bug hunting.
552
            log.debug("Retrieving '%s'..." % local_gzip_file)
8644387c   Goutte   Use real data.
553
            urllib.urlretrieve(remote_gzip_file, local_gzip_file)
9bfa6c42   Goutte   More bug hunting.
554
            log.debug("Retrieved '%s'." % local_gzip_file)
dc0be992   Goutte   Support having no...
555
556
        else:
            log.debug("Found '%s' in the cache." % local_gzip_file)
8644387c   Goutte   Use real data.
557
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560

    local_netc_files = []
    for local_gzip_file in local_gzip_files:
        local_netc_file = local_gzip_file[0:-3]
9bfa6c42   Goutte   More bug hunting.
561
        log.debug("Unzipping '%s'..." % local_gzip_file)
3c064b17   Goutte   Ignore failures w...
562
563
        success = True
        try:
5ef50583   Goutte   Clean up.
564
            with gzip.open(local_gzip_file) as f:
3c064b17   Goutte   Ignore failures w...
565
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569
                file_content = f.read()
                with open(local_netc_file, 'w+b') as g:
                    g.write(file_content)
        except Exception as e:
            success = False
dc0be992   Goutte   Support having no...
570
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574
            log.error("Cannot process gz file '%s' from '%s' : %s" %
                      (local_gzip_file, url, e))
            # Sometimes, the downloaded gz is corrupted, and CRC checks fail.
            # We want to delete the local gz file and try again next time.
            removefile(local_gzip_file)
3c064b17   Goutte   Ignore failures w...
575
        if success:
dc0be992   Goutte   Support having no...
576
            local_netc_files.append(local_netc_file)
3c064b17   Goutte   Ignore failures w...
577
            log.debug("Unzipped '%s'." % local_gzip_file)
8644387c   Goutte   Use real data.
578

ea6c8d5d   Goutte   Add interval cons...
579
    return list(set(local_netc_files))  # remove possible dupes
8644387c   Goutte   Use real data.
580
581


596da00d   Goutte   Add more exceptio...
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# class DataParser:
#     """
#     Default data parser
#     A wip to try to handle code exeptions sanely.
#     """
#
#     # Override these using the model configuration
#     default_nc_keys = {
#         'hee': 'HEE',
#         'vtot': 'V',
#         'magn': 'B',
#         'temp': 'T',
#         'dens': 'N',
#         'pdyn': 'P_dyn',
#         'atse': 'Delta_angle',
#     }
#
#     def __init__(self, target, model):
#         self.target = target
#         self.model = model
#         pass
#
#     def _read_var(self, nc, _keys, _key, mandatory=False):
#         try:
#             return nc.variables[_keys[_key]]
#         except KeyError:
#             pass
#         if mandatory:
#             raise Exception("No variable '%s' found in NetCDF." % _keys[_key])
#         return [None] * len(nc.variables['Time'])  # slow -- use numpy?
#
#     def parse(self, cdf_handle):
#         nc_keys = self.default_nc_keys.copy()
#
#         times = cdf_handle.variables['Time']  # YYYY DOY HH MM SS .ms
#         data_v = self._read_var(cdf_handle, nc_keys, 'vtot')
#         data_b = self._read_var(cdf_handle, nc_keys, 'magn')
#         data_t = self._read_var(cdf_handle, nc_keys, 'temp')
#         data_n = self._read_var(cdf_handle, nc_keys, 'dens')
#         data_p = self._read_var(cdf_handle, nc_keys, 'pdyn')
#         data_a = self._read_var(cdf_handle, nc_keys, 'atse')
#
#         return zip()


de97d643   Goutte   Fix more bugs.
627
628
def get_data_for_target(target_config, input_slug,
                        started_at, stopped_at):
180d7d97   Goutte   Refactor heavily.
629
630
631
632
    """
    :return: dict whose keys are datetime as str, values tuples of data
    """
    log.debug("Grabbing data for '%s'..." % target_config['slug'])
80352490   Goutte   Multi model suppo...
633

8644387c   Goutte   Use real data.
634
    try:
297a7dfc   Goutte   Add support for i...
635
        models = target_config['models'][input_slug]
077980eb   Goutte   Improve availabil...
636
637
    except Exception as e:
        abort(500, "Invalid model configuration for '%s' : %s"
180d7d97   Goutte   Refactor heavily.
638
639
              % (target_config['slug'], str(e)))
    try:
80352490   Goutte   Multi model suppo...
640
        orbits = target_config['orbit']['models']
d1c44c51   Goutte   Enable Earth
641
642
643
644
    except KeyError as e:
        orbits = []
        # abort(500, "Invalid orbit configuration for '%s' : %s"
        #       % (target_config['slug'], str(e)))
28ef3790   Goutte   Clean up.
645

58bfe281   Goutte   Handle start and ...
646
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656
    def _sta_sto(_cnf, _sta, _sto):
        if 'started_at' in _cnf:
            _s0 = datetime.datetime.strptime(_cnf['started_at'], FILE_DATE_FMT)
            _s0 = max(_s0, _sta)
        else:
            _s0 = _sta
        if 'stopped_at' in _cnf:
            _s1 = datetime.datetime.strptime(_cnf['stopped_at'], FILE_DATE_FMT)
            _s1 = min(_s1, _sto)
        else:
            _s1 = _sto
aa7247d6   Goutte   Generate a CDF fi...
657
        return _s0, _s1
80352490   Goutte   Multi model suppo...
658

d1c44c51   Goutte   Enable Earth
659
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    def _read_var(_nc, _keys, _key, mandatory=False):
        try:
            return _nc.variables[_keys[_key]]
        except KeyError:
            pass
        if mandatory:
            raise Exception("No variable '%s' found in NetCDF." % _keys[_key])
        return [None] * len(_nc.variables['Time'])  # slow -- use numpy!

fd1829c3   Goutte   Use the new AMDA API
668
    # Override these using the model configuration in config.yml
d1c44c51   Goutte   Enable Earth
669
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678
    default_nc_keys = {
        'hee': 'HEE',
        'vtot': 'V',
        'magn': 'B',
        'temp': 'T',
        'dens': 'N',
        'pdyn': 'P_dyn',
        'atse': 'Delta_angle',
    }

80352490   Goutte   Multi model suppo...
679
    precision = "%Y-%m-%dT%H"  # model and orbits times are only equal-ish
180d7d97   Goutte   Refactor heavily.
680
    orbit_data = {}  # keys are datetime as str, values arrays of XY
ea6c8d5d   Goutte   Add interval cons...
681
682

    for orbit in orbits:
58bfe281   Goutte   Handle start and ...
683
        s0, s1 = _sta_sto(orbit, started_at, stopped_at)
ea6c8d5d   Goutte   Add interval cons...
684

d1c44c51   Goutte   Enable Earth
685
686
687
688
        nc_keys = default_nc_keys.copy()
        if 'parameters' in orbit:
            nc_keys.update(orbit['parameters'])

ea6c8d5d   Goutte   Add interval cons...
689
690
691
692
693
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695
696
        orbit_files = retrieve_amda_netcdf(
            target_config['slug'], orbit['slug'], s0, s1
        )
        for orbit_file in orbit_files:
            log.debug("%s: opening orbit NETCDF4 '%s'..." %
                      (target_config['name'], orbit_file))
            cdf_handle = Dataset(orbit_file, "r", format="NETCDF4")
            times = cdf_handle.variables['Time']  # YYYY DOY HH MM SS .ms
d1c44c51   Goutte   Enable Earth
697
            data_hee = _read_var(cdf_handle, nc_keys, 'hee', mandatory=True)
ea6c8d5d   Goutte   Add interval cons...
698
699
700

            log.debug("%s: aggregating data from '%s'..." %
                      (target_config['name'], orbit_file))
d1c44c51   Goutte   Enable Earth
701
            for ltime, datum_hee in zip(times, data_hee):
1324cc91   Goutte   Make the footer i...
702
                try:
d1c44c51   Goutte   Enable Earth
703
704
705
706
                    dtime = datetime_from_list(ltime)
                except Exception:
                    log.error("Failed to parse time from %s." % ltime)
                    raise
a2c1b3ca   Goutte   Fix an issue with...
707
                # Keep only what's in the interval
ea6c8d5d   Goutte   Add interval cons...
708
                if s0 <= dtime <= s1:
1324cc91   Goutte   Make the footer i...
709
                    dkey = round_time(dtime, 60*60).strftime(precision)
ea6c8d5d   Goutte   Add interval cons...
710
711
                    orbit_data[dkey] = datum_hee
            cdf_handle.close()
180d7d97   Goutte   Refactor heavily.
712

8644387c   Goutte   Use real data.
713
    all_data = {}  # keys are datetime as str, values tuples of data
a2c1b3ca   Goutte   Fix an issue with...
714

58bfe281   Goutte   Handle start and ...
715
716
717
718
719
    for model in models:
        s0, s1 = _sta_sto(model, started_at, stopped_at)
        model_files = retrieve_amda_netcdf(
            target_config['slug'], model['slug'], s0, s1
        )
d1c44c51   Goutte   Enable Earth
720
721
722
723
        nc_keys = default_nc_keys.copy()
        if 'parameters' in model:
            nc_keys.update(model['parameters'])

129181a6   Goutte   Add more logs to ...
724
725
726
727
        if len(model_files) == 0:
            log.warn("No model data for '%s' '%s'."
                     % (target_config['slug'], model['slug']))

58bfe281   Goutte   Handle start and ...
728
        for model_file in model_files:
58bfe281   Goutte   Handle start and ...
729
730
731
            log.debug("%s: opening model NETCDF4 '%s'..." %
                      (target_config['name'], model_file))
            cdf_handle = Dataset(model_file, "r", format="NETCDF4")
596da00d   Goutte   Add more exceptio...
732

d1c44c51   Goutte   Enable Earth
733
            # log.debug(cdf_handle.variables.keys())
596da00d   Goutte   Add more exceptio...
734

58bfe281   Goutte   Handle start and ...
735
            times = cdf_handle.variables['Time']  # YYYY DOY HH MM SS .ms
d1c44c51   Goutte   Enable Earth
736
737
738
739
740
741
742
743
744
745
746
747
748
749
750
751
            data_v = _read_var(cdf_handle, nc_keys, 'vtot')
            data_b = _read_var(cdf_handle, nc_keys, 'magn')
            data_t = _read_var(cdf_handle, nc_keys, 'temp')
            data_n = _read_var(cdf_handle, nc_keys, 'dens')
            data_p = _read_var(cdf_handle, nc_keys, 'pdyn')
            data_a = _read_var(cdf_handle, nc_keys, 'atse')

            # Usually:
            # Time, StartTime, StopTime, V, B, N, T, Delta_angle, P_dyn
            # Earth:
            # Time, BartelsNumber, ImfID, SwID, ImfPoints,
            # SwPoints, B_M_av, B_Vec_av, B_Theta_av,
            # B_Phi_av, B, T, N, V, Vlat, Vlon,
            # Alpha, RamP, E, Beta, Ma, Kp, R, DST,
            # AE, Flux, Flag, F10_Index, StartTime, StopTime

a2c1b3ca   Goutte   Fix an issue with...
752
753
754
755
756
757
            # Don't ignore, but instead, compute a mean ?
            # Look for discretisation ? temporal drizzling ? 1D drizzling ?
            # The easy linear mean feels a bit rough too. Running mean too.
            # FIXME
            ignored_count = 0

58bfe281   Goutte   Handle start and ...
758
759
            log.debug("%s: aggregating data from '%s'..." %
                      (target_config['name'], model_file))
d1c44c51   Goutte   Enable Earth
760
761
762
            for ltime, datum_v, datum_b, datum_t, datum_n, datum_p, datum_a \
                    in zip(times, data_v, data_b, data_t, data_n, data_p, data_a):

58bfe281   Goutte   Handle start and ...
763
                try:
d1c44c51   Goutte   Enable Earth
764
765
766
767
                    dtime = datetime_from_list(ltime)
                except Exception:
                    log.error("Failed to parse time from %s." % ltime)
                    raise
596da00d   Goutte   Add more exceptio...
768

a2c1b3ca   Goutte   Fix an issue with...
769
770
771
772
773
774
775
776
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826
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828
                if not (s0 <= dtime <= s1):
                    continue  # Cull what's out of the interval

                droundtime = round_time(dtime, 60*60)
                dkey = droundtime.strftime(precision)

                x_hee = None
                y_hee = None
                if dkey in orbit_data:
                    x_hee = orbit_data[dkey][0] / ASTRONOMICAL_UNIT_IN_KM
                    y_hee = orbit_data[dkey][1] / ASTRONOMICAL_UNIT_IN_KM

                # First exception: V may be a vector instead of a scalar
                if hasattr(datum_v, '__len__'):
                    vrad = datum_v[0]
                    vtan = datum_v[1]
                    vtot = sqrt(vrad * vrad + vtan * vtan)
                else:  # eg: Earth
                    vrad = None
                    vtan = None
                    vtot = datum_v

                # Second exception: Earth is always at (1, 0)
                if target_config['slug'] == 'earth':
                    x_hee = 1
                    y_hee = 0

                # Third exception: B is a Vector3 or a Vector2 for Earth
                if target_config['slug'] == 'earth':
                    if model['slug'] == 'omni_hour_all':  # Vector3
                        datum_b = datum_b[0]
                    # if model['slug'] == 'ace_swepam_real':  # Vector2
                    #     datum_b = datum_b[0]
                    if model['slug'] == 'omni_hour_all':
                        datum_p = datum_n * vtot * vtot * 1.6726e-6  # ?
                    if model['slug'] == 'ace_swepam_real':
                        datum_p = datum_n * vtot * vtot * 1.6726e-6  # ?
                    if vtot is None or isnan(vtot):
                        continue

                # Keep adding exceptions here until you can't or become mad

                # Crude/Bad drizzling condition : first found datum in the hour
                # gets to set the data. Improve this.
                if dkey not in all_data:
                    # /!. The Set value MUST be in the same order as PROPERTIES
                    all_data[dkey] = (
                        dtime.strftime("%Y-%m-%dT%H:%M:%S+00:00"),
                        vrad, vtan, vtot,
                        datum_b, datum_t, datum_p, datum_n, datum_a,
                        x_hee, y_hee
                    )
                else:
                    ignored_count += 1

            # Improve this loop so as to remove this stinky debug log
            if ignored_count > 0:
                log.debug("    Ignored %d datum(s) during ~\"drizzling\"."
                          % ignored_count)

58bfe281   Goutte   Handle start and ...
829
            cdf_handle.close()
8644387c   Goutte   Use real data.
830

180d7d97   Goutte   Refactor heavily.
831
832
833
    return all_data


297a7dfc   Goutte   Add support for i...
834
def generate_csv_contents(target_slug, input_slug, started_at, stopped_at):
180d7d97   Goutte   Refactor heavily.
835
836
837
838
839
840
    target_config = get_target_config(target_slug)
    log.debug("Crunching CSV contents for '%s'..." % target_config['name'])
    si = StringIO.StringIO()
    cw = csv_writer(si)
    cw.writerow(PROPERTIES)

297a7dfc   Goutte   Add support for i...
841
842
843
844
    all_data = get_data_for_target(
        target_config=target_config, input_slug=input_slug,
        started_at=started_at, stopped_at=stopped_at
    )
180d7d97   Goutte   Refactor heavily.
845
846

    log.debug("Writing and sorting CSV for '%s'..." % target_config['slug'])
8644387c   Goutte   Use real data.
847
848
    for dkey in sorted(all_data):
        cw.writerow(all_data[dkey])
2d2af24b   Goutte   Add a basic orbit...
849

180d7d97   Goutte   Refactor heavily.
850
    log.info("Generated CSV contents for '%s'." % target_config['slug'])
2d2af24b   Goutte   Add a basic orbit...
851
852
    return si.getvalue()

8644387c   Goutte   Use real data.
853

de97d643   Goutte   Fix more bugs.
854
855
def generate_csv_file_if_needed(target_slug, input_slug,
                                started_at, stopped_at):
297a7dfc   Goutte   Add support for i...
856
857
858
    filename = "%s_%s_%s_%s.csv" % (target_slug, input_slug,
                                    started_at.strftime(FILE_DATE_FMT),
                                    stopped_at.strftime(FILE_DATE_FMT))
e18701b6   Goutte   Cache clear (remo...
859
    local_csv_file = join(CACHE_DIR, filename)
80352490   Goutte   Multi model suppo...
860
861
862

    generate = True
    if isfile(local_csv_file):
297a7dfc   Goutte   Add support for i...
863
        # It needs to have more than one line to not be empty (headers)
80352490   Goutte   Multi model suppo...
864
865
866
867
868
869
870
871
872
        with open(local_csv_file) as f:
            cnt = 0
            for _ in f:
                cnt += 1
                if cnt > 1:
                    generate = False
                    break

    if generate:
c0df94bc   Goutte   Adding more logs.
873
874
875
        log.info("Generating CSV '%s'..." % local_csv_file)
        try:
            with open(local_csv_file, mode="w+") as f:
de97d643   Goutte   Fix more bugs.
876
877
878
879
                f.write(generate_csv_contents(
                    target_slug=target_slug, input_slug=input_slug,
                    started_at=started_at, stopped_at=stopped_at
                ))
c0df94bc   Goutte   Adding more logs.
880
881
            log.info("Generation of '%s' done." % filename)
        except Exception as e:
d1c44c51   Goutte   Enable Earth
882
883
884
            from sys import exc_info
            from traceback import extract_tb
            exc_type, exc_value, exc_traceback = exc_info()
dc0be992   Goutte   Support having no...
885
            log.error(e)
d1c44c51   Goutte   Enable Earth
886
887
            for trace in extract_tb(exc_traceback):
                log.error(trace)
5ede388f   Goutte   Make sure failed ...
888
            if isfile(local_csv_file):
92abc15b   Goutte   Mistrust the API ...
889
                log.warn("Removing failed CSV '%s'..." % local_csv_file)
5ede388f   Goutte   Make sure failed ...
890
                removefile(local_csv_file)
9bfa6c42   Goutte   More bug hunting.
891
            abort(500, "Failed creating CSV '%s' : %s" % (filename, e))
c0df94bc   Goutte   Adding more logs.
892
893


e18701b6   Goutte   Cache clear (remo...
894
895
896
897
898
899
900
901
902
903
904
905
906
907
908
909
910
911
912
913
914
915
916
def remove_all_files(in_directory):
    """
    Will throw if something horrible happens.
    Does not remove recursively (could be done with os.walk if needed).
    Does not remove directories either.
    :param in_directory: absolute path to directory
    :return:
    """
    import os

    if not os.path.isdir(in_directory):
        raise ValueError("No directory to clean at '%s'.")

    removed_files = []
    for file_name in os.listdir(in_directory):
        file_path = os.path.join(in_directory, file_name)
        if os.path.isfile(file_path):
            os.remove(file_path)
            removed_files.append(file_path)

    return removed_files


28bb4b28   Goutte   API for the cache...
917
918
def remove_files_created_before(date, in_directory):
    """
077980eb   Goutte   Improve availabil...
919
920
921
    Will throw if something horrible happens.
    Does not remove recursively (could be done with os.walk if needed).
    Does not remove directories either.
28bb4b28   Goutte   API for the cache...
922
    :param date: datetime object
077980eb   Goutte   Improve availabil...
923
    :param in_directory: absolute path to directory
28bb4b28   Goutte   API for the cache...
924
925
926
927
928
929
930
    :return:
    """
    import os
    import time

    secs = time.mktime(date.timetuple())

077980eb   Goutte   Improve availabil...
931
932
    if not os.path.isdir(in_directory):
        raise ValueError("No directory to clean at '%s'.")
28bb4b28   Goutte   API for the cache...
933
934
935
936

    removed_files = []
    for file_name in os.listdir(in_directory):
        file_path = os.path.join(in_directory, file_name)
077980eb   Goutte   Improve availabil...
937
938
939
940
941
        if os.path.isfile(file_path):
            t = os.stat(file_path)
            if t.st_ctime < secs:
                os.remove(file_path)
                removed_files.append(file_path)
28bb4b28   Goutte   API for the cache...
942
943
944
945

    return removed_files


297a7dfc   Goutte   Add support for i...
946
947
948
949
950
def get_input_slug_from_query(inp=None):
    if inp is None:
        input_slug = request.args.get('input_slug', 'l1')
    else:
        input_slug = inp
de97d643   Goutte   Fix more bugs.
951
    if input_slug not in [i['slug'] for i in config['inputs']]:
297a7dfc   Goutte   Add support for i...
952
953
954
955
        input_slug = 'l1'  # be tolerant instead of yelling loudly
    return input_slug


284f4688   Goutte   Continue layers i...
956
957
958
def get_interval_from_query():
    """
    Get the interval from the query, or from defaults.
3309d7c3   Goutte   Improve the date ...
959
    Returns ISO date strings.
284f4688   Goutte   Continue layers i...
960
961
962
963
964
965
966
967
968
969
970
971
    """
    before = relativedelta(months=2)
    after = relativedelta(months=1)
    today = datetime.datetime.now().replace(hour=0, minute=0, second=0)
    started_at = today - before
    stopped_at = today + after
    default_started_at = started_at.strftime(FILE_DATE_FMT)
    default_stopped_at = stopped_at.strftime(FILE_DATE_FMT)

    started_at = request.args.get('started_at', default_started_at)
    stopped_at = request.args.get('stopped_at', default_stopped_at)

3309d7c3   Goutte   Improve the date ...
972
973
974
975
976
    d_started_at = dateparser.isoparse(started_at)
    d_stopped_at = dateparser.isoparse(stopped_at)
    started_at = d_started_at.strftime(FILE_DATE_FMT)
    stopped_at = d_stopped_at.strftime(FILE_DATE_FMT)

284f4688   Goutte   Continue layers i...
977
978
979
    return started_at, stopped_at


1185f353   Goutte   Fix the CME Catal...
980
def get_catalog_layers(input_slug, target_slug, started_at, stopped_at):
0332f168   Goutte   Initial support f...
981
    """
284f4688   Goutte   Continue layers i...
982
983
    In the JSON file we have "columns" and "data".
    Of course, each JSON file has its own columns, with different conventions.
0332f168   Goutte   Initial support f...
984
985
986
987
988
    
    :param input_slug: 
    :param target_slug: 
    :return: 
    """
0332f168   Goutte   Initial support f...
989
    import json
2204c3f7   Goutte   Improve layers co...
990
991

    def _get_index_of_key(_data, _key):
2204c3f7   Goutte   Improve layers co...
992
993
994
995
996
997
998
        try:
            index = _data['columns'].index(_key)
        except ValueError:
            log.error("Key %s not found in columns of %s" % (_key, _data))
            raise
        return index

1185f353   Goutte   Fix the CME Catal...
999
1000
1001
1002
1003
1004
1005
1006
1007
    try:
        started_at = datetime.datetime.strptime(started_at, FILE_DATE_FMT)
    except:
        abort(400, "Invalid started_at parameter : '%s'." % started_at)
    try:
        stopped_at = datetime.datetime.strptime(stopped_at, FILE_DATE_FMT)
    except:
        abort(400, "Invalid stopped_at parameter : '%s'." % stopped_at)

0332f168   Goutte   Initial support f...
1008
    catalog_layers = {}
1ab47144   Goutte   Add new menus, up...
1009
    for config_layer in config['layers']['catalogs']:
0332f168   Goutte   Initial support f...
1010
1011
        if 'data' not in config_layer:
            continue
0332f168   Goutte   Initial support f...
1012
1013
1014
1015
1016
1017
        catalog_layers[config_layer['slug']] = []
        for cl_datum in config_layer['data']:
            if input_slug not in cl_datum:
                continue
            if target_slug not in cl_datum[input_slug]:
                continue
b03d5eb1   Goutte   Add the last CME ...
1018
1019
1020
1021
1022
            if cl_datum[input_slug][target_slug] is None:
                # We used ~ in the config, there are no constraints
                constraints = []
            else:
                constraints = cl_datum[input_slug][target_slug]['constraints']
1185f353   Goutte   Fix the CME Catal...
1023

0332f168   Goutte   Initial support f...
1024
1025
            with open(get_path("../data/catalog/%s" % cl_datum['file'])) as f:
                json_data = json.load(f)
284f4688   Goutte   Continue layers i...
1026
1027
1028
                if 'start' not in cl_datum:
                    log.error("Invalid configuration: 'start' is missing.")
                    continue  # skip this
1185f353   Goutte   Fix the CME Catal...
1029
                if 'format' not in cl_datum:
54bb1311   Goutte   Bring back the CM...
1030
1031
1032
                    cl_datum['format'] = CME_DATE_FMT
                    # log.error("Invalid configuration: 'format' is missing.")
                    # continue  # skip this
284f4688   Goutte   Continue layers i...
1033
1034
1035
1036
1037
                start_index = _get_index_of_key(json_data, cl_datum['start'])
                if 'stop' not in cl_datum:
                    stop_index = start_index
                else:
                    stop_index = _get_index_of_key(json_data, cl_datum['stop'])
2204c3f7   Goutte   Improve layers co...
1038

0332f168   Goutte   Initial support f...
1039
                for json_datum in json_data['data']:
2204c3f7   Goutte   Improve layers co...
1040
                    validates_any_constraint = False
b03d5eb1   Goutte   Add the last CME ...
1041
1042
                    if 0 == len(constraints):
                        validates_any_constraint = True
2204c3f7   Goutte   Improve layers co...
1043
1044
1045
1046
1047
1048
1049
1050
1051
1052
1053
1054
1055
                    for constraint in constraints:
                        validates_constraint = True
                        for key, possible_values in constraint.iteritems():
                            actual_value = json_datum[_get_index_of_key(
                                json_data, key
                            )]
                            if actual_value not in possible_values:
                                validates_constraint = False
                                break
                        if validates_constraint:
                            validates_any_constraint = True
                            break
                    if not validates_any_constraint:
0332f168   Goutte   Initial support f...
1056
                        continue
284f4688   Goutte   Continue layers i...
1057
1058
                    start_time = json_datum[start_index]
                    stop_time = json_datum[stop_index]
1185f353   Goutte   Fix the CME Catal...
1059
1060
1061
1062
1063
1064
1065
1066
1067
1068
1069

                    start_time = datetime.datetime.strptime(
                        start_time, cl_datum['format']
                    )
                    stop_time = datetime.datetime.strptime(
                        stop_time, cl_datum['format']
                    )

                    if start_time < started_at:
                        continue

0332f168   Goutte   Initial support f...
1070
                    catalog_layers[config_layer['slug']].append({
1185f353   Goutte   Fix the CME Catal...
1071
1072
                        'start': start_time.strftime(MOMENT_DATE_FMT),
                        'stop':  stop_time.strftime(MOMENT_DATE_FMT),
0332f168   Goutte   Initial support f...
1073
                    })
0332f168   Goutte   Initial support f...
1074
1075
1076
1077

    return catalog_layers


077980eb   Goutte   Improve availabil...
1078
1079
1080
1081
1082
1083
1084
1085
1086
1087
1088
def get_hit_counter():
    hit_count_path = get_path("../VISITS")

    if isfile(hit_count_path):
        hit_count = int(open(hit_count_path).read())
    else:
        hit_count = 1

    return hit_count


a4a9ef03   Goutte   Cache generated C...
1089
1090
1091
1092
1093
1094
1095
1096
1097
1098
1099
1100
1101
1102
1103
1104
def increment_hit_counter():
    hit_count_path = get_path("../VISITS")

    if isfile(hit_count_path):
        hit_count = int(open(hit_count_path).read())
        hit_count += 1
    else:
        hit_count = 1

    hit_counter_file = open(hit_count_path, 'w')
    hit_counter_file.write(str(hit_count))
    hit_counter_file.close()

    return hit_count


4aaf6874   Goutte   Try fixing the ge...
1105
1106
def update_spacepy():
    """
11d86851   Goutte   Add support for s...
1107
    Importing pycdf will fail if the toolbox is not up to date.
4aaf6874   Goutte   Try fixing the ge...
1108
    """
4aaf6874   Goutte   Try fixing the ge...
1109
1110
1111
1112
1113
1114
1115
1116
1117
    try:
        log.info("Updating spacepy's toolbox…")
        import spacepy.toolbox

        spacepy.toolbox.update()
    except Exception as e:
        log.error("Failed to update spacepy : %s." % e)


077980eb   Goutte   Improve availabil...
1118
1119
1120
tpl_global_vars['visits'] = get_hit_counter()


a4a9ef03   Goutte   Cache generated C...
1121
1122
1123
# ROUTING #####################################################################

@app.route('/favicon.ico')
bde97e4d   Goutte   Add more changes ...
1124
def favicon():  # we want it served from the root, not from static/
a4a9ef03   Goutte   Cache generated C...
1125
1126
1127
1128
1129
1130
1131
1132
1133
1134
    return send_from_directory(
        join(app.root_path, 'static', 'img'),
        'favicon.ico', mimetype='image/vnd.microsoft.icon'
    )


@app.route("/")
@app.route("/home.html")
@app.route("/index.html")
def home():
077980eb   Goutte   Improve availabil...
1135
    increment_hit_counter()
bde97e4d   Goutte   Add more changes ...
1136
1137
    parameters = PARAMETERS.values()
    parameters.sort(key=lambda x: x['position'])
297a7dfc   Goutte   Add support for i...
1138
    input_slug = get_input_slug_from_query()
0332f168   Goutte   Initial support f...
1139
    targets = [t for t in config['targets'] if not t['locked']]
284f4688   Goutte   Continue layers i...
1140
    started_at, stopped_at = get_interval_from_query()
0332f168   Goutte   Initial support f...
1141
1142
    for i, target in enumerate(targets):
        targets[i]['catalog_layers'] = get_catalog_layers(
1185f353   Goutte   Fix the CME Catal...
1143
            input_slug, target['slug'], started_at, stopped_at
0332f168   Goutte   Initial support f...
1144
        )
a4a9ef03   Goutte   Cache generated C...
1145
    return render_view('home.html.jinja2', {
0332f168   Goutte   Initial support f...
1146
1147
        # 'targets': config['targets'],
        'targets': targets,
bde97e4d   Goutte   Add more changes ...
1148
        'parameters': parameters,
297a7dfc   Goutte   Add support for i...
1149
        'input_slug': input_slug,
284f4688   Goutte   Continue layers i...
1150
1151
        'started_at': started_at,
        'stopped_at': stopped_at,
a4a9ef03   Goutte   Cache generated C...
1152
1153
1154
        'planets': [s for s in config['targets'] if s['type'] == 'planet'],
        'probes':  [s for s in config['targets'] if s['type'] == 'probe'],
        'comets':  [s for s in config['targets'] if s['type'] == 'comet'],
077980eb   Goutte   Improve availabil...
1155
        'visits':  get_hit_counter(),
a4a9ef03   Goutte   Cache generated C...
1156
1157
1158
    })


64a671cd   Goutte   Add an About page.
1159
1160
@app.route("/about.html")
def about():
36961d6f   Goutte   Slightly improve ...
1161
    import uuid
64a671cd   Goutte   Add an About page.
1162
1163
    increment_hit_counter()
    return render_view('about.html.jinja2', {
36961d6f   Goutte   Slightly improve ...
1164
1165
1166
        'authors_emails': [a['mail'] for a in config['authors']],
        'uuid4': str(uuid.uuid4())[0:3],
        'visits': get_hit_counter(),
64a671cd   Goutte   Add an About page.
1167
1168
1169
    })


6288347a   Goutte   Add the HELP page...
1170
1171
1172
1173
1174
1175
1176
@app.route("/help.html")
def help():
    return render_view('help.html.jinja2', {
        'visits': get_hit_counter(),
    })


297a7dfc   Goutte   Add support for i...
1177
1178
@app.route("/<target>_<inp>_<started_at>_<stopped_at>.csv")
def download_target_csv(target, inp, started_at, stopped_at):
a4a9ef03   Goutte   Cache generated C...
1179
1180
1181
1182
    """
    Grab data and orbit data for the specified `target`,
    rearrange it and return it as a CSV file.
    `started_at` and `stopped_at` should be UTC.
297a7dfc   Goutte   Add support for i...
1183
    `inp` is the input slug, l1 or sa or sb.
a4a9ef03   Goutte   Cache generated C...
1184
    """
180d7d97   Goutte   Refactor heavily.
1185
    check_target_config(target)
a4a9ef03   Goutte   Cache generated C...
1186
    try:
c0df94bc   Goutte   Adding more logs.
1187
        started_at = datetime.datetime.strptime(started_at, FILE_DATE_FMT)
a4a9ef03   Goutte   Cache generated C...
1188
1189
1190
    except:
        abort(400, "Invalid started_at parameter : '%s'." % started_at)
    try:
c0df94bc   Goutte   Adding more logs.
1191
        stopped_at = datetime.datetime.strptime(stopped_at, FILE_DATE_FMT)
a4a9ef03   Goutte   Cache generated C...
1192
1193
    except:
        abort(400, "Invalid stopped_at parameter : '%s'." % stopped_at)
297a7dfc   Goutte   Add support for i...
1194
    input_slug = get_input_slug_from_query(inp=inp)
a4a9ef03   Goutte   Cache generated C...
1195

297a7dfc   Goutte   Add support for i...
1196
1197
1198
    filename = "%s_%s_%s_%s.csv" % (target, input_slug,
                                    started_at.strftime(FILE_DATE_FMT),
                                    stopped_at.strftime(FILE_DATE_FMT))
e18701b6   Goutte   Cache clear (remo...
1199
    local_csv_file = join(CACHE_DIR, filename)
297a7dfc   Goutte   Add support for i...
1200
1201
1202
1203
    generate_csv_file_if_needed(
        target_slug=target, input_slug=input_slug,
        started_at=started_at, stopped_at=stopped_at
    )
a4a9ef03   Goutte   Cache generated C...
1204
1205
1206
    if not isfile(local_csv_file):
        abort(500, "Could not cache CSV file at '%s'." % local_csv_file)

e18701b6   Goutte   Cache clear (remo...
1207
    return send_from_directory(CACHE_DIR, filename)
a4a9ef03   Goutte   Cache generated C...
1208
1209


297a7dfc   Goutte   Add support for i...
1210
1211
@app.route("/<targets>_<inp>_<started_at>_<stopped_at>.tar.gz")
def download_targets_tarball(targets, inp, started_at, stopped_at):
b2837a08   Goutte   Add three retries...
1212
    """
bc18b96c   Goutte   Implement first (...
1213
1214
1215
    Grab data and orbit data for each of the specified `targets`,
    in their own CSV file, and make a tarball of them.
    `started_at` and `stopped_at` should be UTC strings.
b2837a08   Goutte   Add three retries...
1216

ea6c8d5d   Goutte   Add interval cons...
1217
1218
    Note: we do not use this route anymore, but let's keep it shelved for now.

2fedd73b   Goutte   Initial implement...
1219
    targets: string list of targets' slugs, separated by `-`.
b2837a08   Goutte   Add three retries...
1220
    """
2fedd73b   Goutte   Initial implement...
1221
    separator = '-'
0511eed7   Goutte   Tarball generatio...
1222
1223
    targets = targets.split(separator)
    targets.sort()
2fedd73b   Goutte   Initial implement...
1224
1225
    targets_configs = []
    for target in targets:
b2837a08   Goutte   Add three retries...
1226
1227
        if not target:
            abort(400, "Invalid targets format : `%s`." % targets)
180d7d97   Goutte   Refactor heavily.
1228
        targets_configs.append(get_target_config(target))
2fedd73b   Goutte   Initial implement...
1229
    if 0 == len(targets_configs):
b2837a08   Goutte   Add three retries...
1230
1231
        abort(400, "No valid targets specified. What are you doing?")

b2837a08   Goutte   Add three retries...
1232
    try:
ea6c8d5d   Goutte   Add interval cons...
1233
        started_at = datetime.datetime.strptime(started_at, FILE_DATE_FMT)
b2837a08   Goutte   Add three retries...
1234
1235
1236
    except:
        abort(400, "Invalid started_at parameter : '%s'." % started_at)
    try:
ea6c8d5d   Goutte   Add interval cons...
1237
        stopped_at = datetime.datetime.strptime(stopped_at, FILE_DATE_FMT)
b2837a08   Goutte   Add three retries...
1238
1239
    except:
        abort(400, "Invalid stopped_at parameter : '%s'." % stopped_at)
ea6c8d5d   Goutte   Add interval cons...
1240
1241
    sta = started_at.strftime(FILE_DATE_FMT)
    sto = stopped_at.strftime(FILE_DATE_FMT)
b2837a08   Goutte   Add three retries...
1242

297a7dfc   Goutte   Add support for i...
1243
1244
1245
1246
1247
    input_slug = get_input_slug_from_query(inp=inp)

    gzip_filename = "%s_%s_%s_%s.tar.gz" % (
        separator.join(targets), input_slug, sta, sto
    )
e18701b6   Goutte   Cache clear (remo...
1248
    local_gzip_file = join(CACHE_DIR, gzip_filename)
2fedd73b   Goutte   Initial implement...
1249
1250

    if not isfile(local_gzip_file):
0511eed7   Goutte   Tarball generatio...
1251
        log.debug("Creating the CSV files for the tarball...")
2fedd73b   Goutte   Initial implement...
1252
        for target_config in targets_configs:
297a7dfc   Goutte   Add support for i...
1253
1254
1255
            filename = "%s_%s_%s_%s.csv" % (
                target_config['slug'], input_slug, sta, sto
            )
e18701b6   Goutte   Cache clear (remo...
1256
            local_csv_file = join(CACHE_DIR, filename)
2fedd73b   Goutte   Initial implement...
1257
1258
            if not isfile(local_csv_file):
                with open(local_csv_file, mode="w+") as f:
297a7dfc   Goutte   Add support for i...
1259
1260
1261
1262
1263
1264
                    f.write(generate_csv_contents(
                        target_slug=target_config['slug'],
                        started_at=started_at,
                        stopped_at=stopped_at,
                        input_slug=input_slug
                    ))
2fedd73b   Goutte   Initial implement...
1265

0511eed7   Goutte   Tarball generatio...
1266
        log.debug("Creating the tarball '%s'..." % local_gzip_file)
2fedd73b   Goutte   Initial implement...
1267
1268
        with tarfile.open(local_gzip_file, "w:gz") as tar:
            for target_config in targets_configs:
297a7dfc   Goutte   Add support for i...
1269
1270
1271
                filename = "%s_%s_%s_%s.csv" % (
                    target_config['slug'], input_slug, sta, sto
                )
e18701b6   Goutte   Cache clear (remo...
1272
                local_csv_file = join(CACHE_DIR, filename)
2fedd73b   Goutte   Initial implement...
1273
1274
1275
                tar.add(local_csv_file, arcname=filename)

    if not isfile(local_gzip_file):
0511eed7   Goutte   Tarball generatio...
1276
        abort(500, "No tarball to serve. Looked at '%s'." % local_gzip_file)
2fedd73b   Goutte   Initial implement...
1277

e18701b6   Goutte   Cache clear (remo...
1278
    return send_from_directory(CACHE_DIR, gzip_filename)
b2837a08   Goutte   Add three retries...
1279

28bb4b28   Goutte   API for the cache...
1280

297a7dfc   Goutte   Add support for i...
1281
1282
@app.route("/<targets>_<inp>_<params>_<started_at>_<stopped_at>.nc")
def download_targets_netcdf(targets, inp, params, started_at, stopped_at):
bc18b96c   Goutte   Implement first (...
1283
    """
4aaf6874   Goutte   Try fixing the ge...
1284
1285
    NOTE : This is not used anymore.
    
bc18b96c   Goutte   Implement first (...
1286
    Grab data and orbit data for the specified `target`,
aa7247d6   Goutte   Generate a CDF fi...
1287
    rearrange it and return it as a NetCDF file.
e18701b6   Goutte   Cache clear (remo...
1288
    `started_at` and `stopped_at` are expected to be UTC.
bc18b96c   Goutte   Implement first (...
1289
1290
1291
1292

    targets: string list of targets' slugs, separated by `-`.
    params: string list of targets' parameters, separated by `-`.
    """
e18701b6   Goutte   Cache clear (remo...
1293
    separator = '-'  # /!\ this char should never be in target's slugs
bc18b96c   Goutte   Implement first (...
1294
1295
1296
1297
1298
1299
1300
1301
1302
    targets = targets.split(separator)
    targets.sort()
    targets_configs = []
    for target in targets:
        if not target:
            abort(400, "Invalid targets format : `%s`." % targets)
        targets_configs.append(get_target_config(target))
    if 0 == len(targets_configs):
        abort(400, "No valid targets specified. What are you doing?")
4aaf6874   Goutte   Try fixing the ge...
1303

bc18b96c   Goutte   Implement first (...
1304
1305
1306
1307
1308
1309
1310
    params = params.split(separator)
    params.sort()
    if 0 == len(params):
        abort(400, "No valid parameters specified. What are you doing?")
    if not is_list_in_list(params, PARAMETERS.keys()):
        abort(400, "Some parameters are not recognized in '%s'." % str(params))

57493104   Goutte   Add the time to t...
1311
    date_fmt = FILE_DATE_FMT
bc18b96c   Goutte   Implement first (...
1312
1313
1314
1315
1316
1317
1318
1319
1320
1321
1322
    try:
        started_at = datetime.datetime.strptime(started_at, date_fmt)
    except:
        abort(400, "Invalid started_at parameter : '%s'." % started_at)
    try:
        stopped_at = datetime.datetime.strptime(stopped_at, date_fmt)
    except:
        abort(400, "Invalid stopped_at parameter : '%s'." % stopped_at)
    sta = started_at.strftime(date_fmt)
    sto = stopped_at.strftime(date_fmt)

297a7dfc   Goutte   Add support for i...
1323
1324
1325
1326
1327
    input_slug = get_input_slug_from_query(inp=inp)

    nc_filename = "%s_%s_%s_%s_%s.nc" % (
        separator.join(targets), separator.join(params), input_slug, sta, sto
    )
e18701b6   Goutte   Cache clear (remo...
1328
    nc_path = join(CACHE_DIR, nc_filename)
bc18b96c   Goutte   Implement first (...
1329
1330
1331
1332
1333

    if not isfile(nc_path):
        log.debug("Creating the NetCDF file '%s'..." % nc_filename)
        nc_handle = Dataset(nc_path, "w", format="NETCDF4")
        try:
ea6c8d5d   Goutte   Add interval cons...
1334
            nc_handle.description = "Model and orbit data for targets"  # todo
bc18b96c   Goutte   Implement first (...
1335
            nc_handle.history = "Created " + time.ctime(time.time())
ea6c8d5d   Goutte   Add interval cons...
1336
            nc_handle.source = "Heliopropa (CDDP)"
bc18b96c   Goutte   Implement first (...
1337
1338
1339
1340
1341
            available_params = list(PROPERTIES)
            for target in targets_configs:
                target_slug = target['slug']
                log.debug("Adding group '%s' to the NetCDF..." % target_slug)
                nc_group = nc_handle.createGroup(target_slug)
297a7dfc   Goutte   Add support for i...
1342
1343
1344
1345
                data = get_data_for_target(
                    target_config=target, input_slug=input_slug,
                    started_at=started_at, stopped_at=stopped_at
                )
bc18b96c   Goutte   Implement first (...
1346
                dkeys = sorted(data)
ceeb2f4a   Goutte   Add the target co...
1347
1348
                dimension = 'dim_'+target_slug
                nc_handle.createDimension(dimension, len(dkeys))
57493104   Goutte   Add the time to t...
1349
1350

                # TIME #
ceeb2f4a   Goutte   Add the target co...
1351
                nc_time = nc_group.createVariable('time', 'i8', (dimension,))
57493104   Goutte   Add the time to t...
1352
1353
1354
1355
1356
1357
1358
1359
1360
1361
1362
1363
                nc_time.units = "hours since 1970-01-01 00:00:00"
                nc_time.calendar = "standard"
                times = []
                for dkey in dkeys:
                    time_as_string = data[dkey][0][:-6]  # remove +00:00 tail
                    date = datetime.datetime.strptime(time_as_string, date_fmt)
                    times.append(date2num(
                        date, units=nc_time.units, calendar=nc_time.calendar
                    ))
                nc_time[:] = times

                # SELECTED PARAMETERS #
bc18b96c   Goutte   Implement first (...
1364
1365
1366
1367
                nc_vars = []
                indices = []
                for param in params:
                    indices.append(available_params.index(param))
ceeb2f4a   Goutte   Add the target co...
1368
                    nc_var = nc_group.createVariable(param, 'f8', (dimension,))
5a6d4498   Goutte   Add a title to ea...
1369
                    nc_var.units = PARAMETERS[param]['units']
bc18b96c   Goutte   Implement first (...
1370
1371
1372
1373
1374
1375
1376
1377
                    nc_vars.append(nc_var)
                for i, nc_var in enumerate(nc_vars):
                    index = indices[i]
                    values = []
                    for dkey in dkeys:
                        dval = data[dkey]
                        values.append(dval[index])
                    nc_var[:] = values
ceeb2f4a   Goutte   Add the target co...
1378
1379

                # ORBIT #
6491a1f1   Goutte   Fix up the bugs l...
1380
                nc_x = nc_group.createVariable('xhee', 'f8', (dimension,))
ceeb2f4a   Goutte   Add the target co...
1381
                nc_x.units = 'Au'
6491a1f1   Goutte   Fix up the bugs l...
1382
                nc_y = nc_group.createVariable('yhee', 'f8', (dimension,))
ceeb2f4a   Goutte   Add the target co...
1383
1384
1385
                nc_y.units = 'Au'
                values_x = []
                values_y = []
6491a1f1   Goutte   Fix up the bugs l...
1386
1387
                index_x = available_params.index('xhee')
                index_y = available_params.index('yhee')
ceeb2f4a   Goutte   Add the target co...
1388
1389
1390
1391
1392
1393
1394
1395
                for dkey in dkeys:
                    dval = data[dkey]
                    values_x.append(dval[index_x])
                    values_y.append(dval[index_y])
                nc_x[:] = values_x
                nc_y[:] = values_y
            log.debug("Writing NetCDF '%s'..." % nc_filename)

d1c44c51   Goutte   Enable Earth
1396
        except Exception:
57493104   Goutte   Add the time to t...
1397
            log.error("Failed to generate NetCDF '%s'." % nc_filename)
d1c44c51   Goutte   Enable Earth
1398
            raise
bc18b96c   Goutte   Implement first (...
1399
1400
1401
1402
1403
1404
        finally:
            nc_handle.close()

    if not isfile(nc_path):
        abort(500, "No NetCDF to serve. Looked at '%s'." % nc_path)

e18701b6   Goutte   Cache clear (remo...
1405
    return send_from_directory(CACHE_DIR, nc_filename)
bc18b96c   Goutte   Implement first (...
1406
1407


297a7dfc   Goutte   Add support for i...
1408
1409
@app.route("/<targets>_<inp>_<started_at>_<stopped_at>.cdf")
def download_targets_cdf(targets, inp, started_at, stopped_at):
aa7247d6   Goutte   Generate a CDF fi...
1410
1411
1412
1413
1414
1415
1416
1417
1418
1419
1420
1421
1422
1423
1424
1425
1426
1427
1428
1429
    """
    Grab data and orbit data for the specified `target`,
    rearrange it and return it as a CDF file.
    `started_at` and `stopped_at` are expected to be UTC.

    targets: string list of targets' slugs, separated by `-`.
    params: string list of targets' parameters, separated by `-`.
    """
    separator = '-'  # /!\ this char should never be in target's slugs
    targets = targets.split(separator)
    targets.sort()
    targets_configs = []
    for target in targets:
        if not target:
            abort(400, "Invalid targets format : `%s`." % targets)
        targets_configs.append(get_target_config(target))
    if 0 == len(targets_configs):
        abort(400, "No valid targets specified. What are you doing?")

    params = PARAMETERS.keys()
aa7247d6   Goutte   Generate a CDF fi...
1430
1431
1432
1433
1434
1435
1436
1437
1438
1439
1440
1441

    try:
        started_at = datetime.datetime.strptime(started_at, FILE_DATE_FMT)
    except:
        abort(400, "Invalid started_at parameter : '%s'." % started_at)
    try:
        stopped_at = datetime.datetime.strptime(stopped_at, FILE_DATE_FMT)
    except:
        abort(400, "Invalid stopped_at parameter : '%s'." % stopped_at)
    sta = started_at.strftime(FILE_DATE_FMT)
    sto = stopped_at.strftime(FILE_DATE_FMT)

297a7dfc   Goutte   Add support for i...
1442
1443
1444
1445
1446
    input_slug = get_input_slug_from_query(inp=inp)

    cdf_filename = "%s_%s_%s_%s.cdf" % (
        separator.join(targets), input_slug, sta, sto
    )
aa7247d6   Goutte   Generate a CDF fi...
1447
1448
1449
1450
    cdf_path = join(CACHE_DIR, cdf_filename)

    if not isfile(cdf_path):
        log.debug("Creating the CDF file '%s'..." % cdf_filename)
604616e4   Goutte   Misc changes from...
1451
        try:
8a48d5fa   Goutte   Make sure spacepy...
1452
            from spacepy import pycdf
4aaf6874   Goutte   Try fixing the ge...
1453
1454
1455
1456
1457
1458
1459
1460
1461
        except ImportError:
            # If spacepy's toolbox is not up-to-date, importing will fail.
            # So, let's update and try again !
            update_spacepy()
            try:
                from spacepy import pycdf
            except ImportError as e:
                log.error("Failed to import pycdf from spacepy : %s" % e)
                raise
2fe06b17   Goutte   Move the ENV dire...
1462
1463
1464
        except Exception as e:
            log.error("Failed to import pycdf from spacepy : %s" % e)
            raise
4aaf6874   Goutte   Try fixing the ge...
1465

8a48d5fa   Goutte   Make sure spacepy...
1466
        try:
952e3d8f   Goutte   Move to another s...
1467
            cdf_handle = pycdf.CDF(cdf_path, masterpath='')
54bb1311   Goutte   Bring back the CM...
1468
1469
            targets_names = ', '.join([t['name'] for t in targets_configs])
            description = "Model and orbit data for %s." % targets_names
952e3d8f   Goutte   Move to another s...
1470
1471
1472
            cdf_handle.attrs['Description'] = description
            cdf_handle.attrs['Author'] = "Heliopropa.irap.omp.eu (CDPP)"
            cdf_handle.attrs['Created'] = str(time.ctime(time.time()))
aa7247d6   Goutte   Generate a CDF fi...
1473

54bb1311   Goutte   Bring back the CM...
1474
1475
1476
1477
            # fixme: Try changing the name from 00 to something relevant
            cdf_handle.attrs['Title'] = "Heliopropa - %s" % targets_names
            #######

aa7247d6   Goutte   Generate a CDF fi...
1478
1479
1480
            available_params = list(PROPERTIES)
            for target in targets_configs:
                target_slug = target['slug']
297a7dfc   Goutte   Add support for i...
1481
1482
1483
1484
                data = get_data_for_target(
                    target_config=target, input_slug=input_slug,
                    started_at=started_at, stopped_at=stopped_at
                )
aa7247d6   Goutte   Generate a CDF fi...
1485
1486
1487
                dkeys = sorted(data)

                values = []
aa7247d6   Goutte   Generate a CDF fi...
1488
                for dkey in dkeys:
952e3d8f   Goutte   Move to another s...
1489
1490
1491
1492
                    time_str = data[dkey][0][:-6]  # remove +00:00 tail
                    date = datetime.datetime.strptime(time_str, FILE_DATE_FMT)
                    values.append(date)
                kt = "%s_time" % target_slug
4aaf6874   Goutte   Try fixing the ge...
1493
                cdf_handle.new(kt, type=pycdf.const.CDF_EPOCH)
952e3d8f   Goutte   Move to another s...
1494
                cdf_handle[kt] = values
4aaf6874   Goutte   Try fixing the ge...
1495
                # cdf_handle[kt].attrs['FIELDNAM'] = "Time since 0 A.D"
aa7247d6   Goutte   Generate a CDF fi...
1496
1497
1498

                for param in params:
                    k = "%s_%s" % (target_slug, param)
4aaf6874   Goutte   Try fixing the ge...
1499
                    # print("PARAM %s" % k)
aa7247d6   Goutte   Generate a CDF fi...
1500
1501
                    values = []
                    i = available_params.index(param)
4aaf6874   Goutte   Try fixing the ge...
1502
                    has_nones = False
aa7247d6   Goutte   Generate a CDF fi...
1503
                    for dkey in dkeys:
4aaf6874   Goutte   Try fixing the ge...
1504
1505
1506
1507
1508
1509
1510
1511
1512
                        value = data[dkey][i]
                        if value is None:
                            has_nones = True
                        values.append(value)
                    if has_nones:
                        # PyCDF hates it when there are Nones.
                        # Since we don't know what value to set instead,
                        # let's skip the param altogether.
                        continue
aa7247d6   Goutte   Generate a CDF fi...
1513
                    cdf_handle[k] = values
952e3d8f   Goutte   Move to another s...
1514
1515
1516
1517
1518
1519
1520
1521
1522
1523
                    attrs = cdf_handle[k].attrs
                    attrs['UNITS'] = PARAMETERS[param]['units']
                    attrs['LABLAXIS'] = PARAMETERS[param]['name']
                    attrs['FIELDNAM'] = PARAMETERS[param]['title']
                    if values:
                        attrs['VALIDMIN'] = min(values)
                        attrs['VALIDMAX'] = max(values)

                kx = "%s_xhee" % target_slug
                ky = "%s_yhee" % target_slug
aa7247d6   Goutte   Generate a CDF fi...
1524
1525
1526
1527
1528
                values_xhee = []
                values_yhee = []
                index_x = available_params.index('xhee')
                index_y = available_params.index('yhee')
                for dkey in dkeys:
391d581c   Goutte   Make the CDF down...
1529
1530
1531
                    value_xhee = data[dkey][index_x]
                    value_yhee = data[dkey][index_y]
                    # We've got some `None`s cropping up in the data sometimes.
4aaf6874   Goutte   Try fixing the ge...
1532
                    # PyCDF does not digest Nones at all.
391d581c   Goutte   Make the CDF down...
1533
1534
1535
1536
1537
                    # While they solve this upstream, let's make an ugly fix!
                    if (value_xhee is not None) and (value_yhee is not None):
                        values_xhee.append(value_xhee)
                        values_yhee.append(value_yhee)
                    else:
4aaf6874   Goutte   Try fixing the ge...
1538
1539
                        values_xhee.append(0)
                        values_yhee.append(0)
391d581c   Goutte   Make the CDF down...
1540
                        log.warn("Orbit data for %s has NaNs." % target_slug)
952e3d8f   Goutte   Move to another s...
1541
1542
1543
1544
                cdf_handle[kx] = values_xhee
                cdf_handle[ky] = values_yhee
                cdf_handle[kx].attrs['UNITS'] = 'Au'
                cdf_handle[ky].attrs['UNITS'] = 'Au'
aa7247d6   Goutte   Generate a CDF fi...
1545
1546

            log.debug("Writing CDF '%s'..." % cdf_filename)
952e3d8f   Goutte   Move to another s...
1547
1548
            cdf_handle.close()
            log.debug("Wrote CDF '%s'." % cdf_filename)
aa7247d6   Goutte   Generate a CDF fi...
1549
1550
1551

        except Exception as e:
            log.error("Failed to generate CDF '%s'." % cdf_filename)
952e3d8f   Goutte   Move to another s...
1552
1553
            if isfile(cdf_path):
                removefile(cdf_path)
aa7247d6   Goutte   Generate a CDF fi...
1554
1555
            raise

aa7247d6   Goutte   Generate a CDF fi...
1556
1557
1558
1559
1560
1561
    if not isfile(cdf_path):
        abort(500, "No CDF to serve. Looked at '%s'." % cdf_path)

    return send_from_directory(CACHE_DIR, cdf_filename)


11d86851   Goutte   Add support for s...
1562
1563
1564
1565
1566
1567
1568
1569
1570
1571
1572
1573
1574
1575
1576
1577
1578
1579
1580
1581
1582
1583
1584
1585
1586
1587
1588
1589
1590
1591
1592
1593
1594
1595
1596
1597
1598
1599
1600
1601
1602
1603
1604
1605
1606
1607
1608
1609
1610
1611
1612
1613
1614
1615
1616
@app.route("/<target>_auroral_catalog.csv")
def download_auroral_catalog_csv(target):
    tc = validate_tap_target_config(target)
    log.debug("Requesting auroral emissions CSV for %s..." % tc['name'])

    filename = "%s_auroral_catalog.csv" % (target)
    local_csv_file = join(CACHE_DIR, filename)


    target_name = tc['tap']['target_name']
    emissions = retrieve_auroral_emissions(target_name)

    # Be careful with regexes in python 2 ; best always use the ^$
    thumbnail_url_filter = re.compile("^.*proc(?:_small)?\\.(?:jpe?g|png|webp|gif|bmp|tiff)$")

    # Filter the emissions
    def _keep_emission(emission):
        ok = thumbnail_url_filter.match(emission['thumbnail_url'])
        # print("ok", ok, emission['thumbnail_url'])
        return bool(ok)

    emissions = [e for e in emissions if _keep_emission(e)]

    header = ('time_min', 'time_max', 'thumbnail_url', 'external_link')
    if len(emissions):
        header = emissions[0].keys()
    si = StringIO.StringIO()
    cw = csv_dict_writer(si, fieldnames=header)
    cw.writeheader()
    # 'time_min', 'time_max', 'thumbnail_url', 'external_link'
    #cw.writerow(head)

    log.debug("Writing auroral emissions CSV for %s..." % tc['name'])
    cw.writerows(emissions)

    log.info("Generated auroral emissions CSV contents for %s." % tc['name'])
    return si.getvalue()

    # if not isfile(local_csv_file):
    #     abort(500, "Could not cache CSV file at '%s'." % local_csv_file)
    #
    # return send_from_directory(CACHE_DIR, filename)




@app.route("/test/auroral/<target>")
def test_auroral_emissions(target):
    tc = validate_tap_target_config(target)
    target_name = tc['tap']['target_name']
    retrieved = retrieve_auroral_emissions(target_name)

    return "%d results:\n%s" % (len(retrieved), str(retrieved))


28bb4b28   Goutte   API for the cache...
1617
1618
# API #########################################################################

e18701b6   Goutte   Cache clear (remo...
1619
1620
1621
1622
1623
1624
1625
1626
1627
1628
1629
1630
@app.route("/cache/clear")
def cache_clear():
    """
    Removes all files from the cache.
    Note: It also removes the .gitkeep file. Not a problem for prod.
    """
    removed_files = remove_all_files(CACHE_DIR)
    count = len(removed_files)
    return "Cache cleared! Removed %d file%s." \
           % (count, 's' if count != 1 else '')


d9710a98   Goutte   Rename the cleanu...
1631
1632
@app.route("/cache/cleanup")
def cache_cleanup():
28bb4b28   Goutte   API for the cache...
1633
1634
    """
    Removes all files from the cache that are older than roughly one month.
e18701b6   Goutte   Cache clear (remo...
1635
    Note: It also removes the .gitkeep file. Maybe it should not, but hey.
28bb4b28   Goutte   API for the cache...
1636
1637
    """
    a_month_ago = datetime.datetime.now() - datetime.timedelta(days=32)
e18701b6   Goutte   Cache clear (remo...
1638
    removed_files = remove_files_created_before(a_month_ago, CACHE_DIR)
d9710a98   Goutte   Rename the cleanu...
1639
1640
1641
    count = len(removed_files)
    return "Cache cleaned! Removed %d old file%s." \
           % (count, 's' if count != 1 else '')
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@app.route("/cache/warmup")
def cache_warmup():
    """
    Warms up the cache for the current day.
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    """
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    warmup_started_at = datetime.datetime.now()
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    sta, sto = get_interval_from_query()
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    inp = 'l1'  # default input, maybe warm them all up ?
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    targets = get_active_targets()
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    targets_slugs = [target['slug'] for target in targets]
    targets_slugs.sort()
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    update_spacepy()
    for target in targets:
        download_target_csv(target['slug'], inp, sta, sto)
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    download_targets_cdf('-'.join(targets_slugs), inp, sta, sto)
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    warmup_ended_at = datetime.datetime.now()
    warmup_timedelta = warmup_ended_at - warmup_started_at

    return "Done in %s." % str(warmup_timedelta)
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@app.route("/log")
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@app.route("/log.html")
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def log_show():
    with open(LOG_FILE, 'r') as f:
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        contents = f.read()
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    return "<pre>" + contents + "</pre>"
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@app.route("/log/clear")
def log_clear():
    with open(LOG_FILE, 'w') as f:
        f.truncate()
    return "Log cleared successfully."


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# DEV TOOLS ###################################################################

# @app.route("/inspect")
# def analyze_cdf():
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#     """
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#     For debug purposes.
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#     """
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#     cdf_to_inspect = get_path("../res/dummy.nc")
#     cdf_to_inspect = get_path("../res/dummy_jupiter_coordinates.nc")
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#
#     si = StringIO.StringIO()
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#     cw = csv.DictWriter(si, fieldnames=['Name', 'Shape', 'Length'])
#     cw.writeheader()
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#
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#     # Time, StartTime, StopTime, V, B, N, T, Delta_angle, P_dyn, QualityFlag
#     cdf_handle = Dataset(cdf_to_inspect, "r", format="NETCDF4")
#     for variable in cdf_handle.variables:
#         v = cdf_handle.variables[variable]
#         cw.writerow({
#             'Name': variable,
#             'Shape': v.shape,
#             'Length': v.size,
#         })
#     cdf_handle.close()
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#
#     return si.getvalue()


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# MAIN ########################################################################

if __name__ == "__main__":
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    # Debug mode is on, as the production server does not use this but run.wsgi
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    extra_files = [get_path('../config.yml')]
    app.run(debug=True, extra_files=extra_files)