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web/run.py 43.5 KB
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# coding=utf-8

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import StringIO
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import datetime
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import gzip
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import json
import logging
import random
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import tarfile
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import time
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import urllib
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from csv import writer as csv_writer
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from math import sqrt
from os import environ, remove as removefile
from os.path import isfile, join, abspath, dirname

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from dateutil.relativedelta import relativedelta
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from flask import Flask
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from flask import request
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from flask import url_for, send_from_directory, abort as abort_flask
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from jinja2 import Environment, FileSystemLoader, Markup
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from netCDF4 import Dataset, date2num
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from yaml import load as yaml_load
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# PATH RELATIVITY #############################################################

THIS_DIRECTORY = dirname(abspath(__file__))


def get_path(relative_path):
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    """Get an absolute path from the relative path to this script directory."""
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    return abspath(join(THIS_DIRECTORY, relative_path))


# COLLECT GLOBAL INFORMATION FROM SOURCES #####################################

# VERSION
with open(get_path('../VERSION'), 'r') as version_file:
    version = version_file.read().strip()

# CONFIG
with open(get_path('../config.yml'), 'r') as config_file:
    config = yaml_load(config_file.read())

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FILE_DATE_FMT = "%Y-%m-%dT%H:%M:%S"

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# LOGGING #####################################################################

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LOG_FILE = get_path('run.log')

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log = logging.getLogger("HelioPropa")
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log.setLevel(logging.DEBUG)
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# log.setLevel(logging.ERROR)                        # <-- set log level here !
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logHandler = logging.FileHandler(LOG_FILE)
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logHandler.setFormatter(logging.Formatter(
    "%(asctime)s - %(levelname)s - %(message)s"
))
log.addHandler(logHandler)
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# HARDCODED CONFIGURATION #####################################################

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# Absolute path to the installed CDF library from https://cdf.gsfc.nasa.gov/
CDF_LIB = '/usr/local/lib/libcdf'

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# Absolute path to the data cache directory
CACHE_DIR = get_path('../cache')

# These two configs are not in the YAML config because adding a new parameter
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# will not work as-is, you'd have to edit some netcdf-related code.
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# The slugs of the available parameters in the generated CSV files.
# The order matters. If you change this you also need to change the
# innermost loop of `get_data_for_target`.
# The javascript knows the targets' properties under these names.
PROPERTIES = ('time', 'vrad', 'vtan', 'vtot', 'btan', 'temp', 'pdyn', 'dens',
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              'atse', 'xhee', 'yhee')
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# The parameters that the users can handle.
# The slug MUST be one of the properties above.
PARAMETERS = {
    'pdyn': {
        'slug': 'pdyn',
        'name': 'Dyn. Pressure',
        'title': 'The dynamic pressure.',
        'units': 'nPa',
        'active': True,
        'position': 10,
    },
    'vtot': {
        'slug': 'vtot',
        'name': 'Velocity',
        'title': 'The velocity of the particles.',
        'units': 'km/s',
        'active': False,
        'position': 20,
    },
    'btan': {
        'slug': 'btan',
        'name': 'B Tangential',
        'title': 'B Tangential.',
        'units': 'nT',
        'active': False,
        'position': 30,
    },
    'temp': {
        'slug': 'temp',
        'name': 'Temperature',
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        'title': 'The temperature.',
        'units': 'eV',
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        'active': False,
        'position': 40,
    },
    'dens': {
        'slug': 'dens',
        'name': 'Density',
        'title': 'The density N.',
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        'units': 'cm^-3',
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        'active': False,
        'position': 50,
    },
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    'atse': {
        'slug': 'atse',
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        'name': 'Angle T-S-E',
        'title': 'Angle Target-Sun-Earth.',
        'units': 'deg',
        'active': False,
        'position': 60,
    },
}


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# SETUP FLASK ENGINE ##########################################################

app = Flask(__name__, root_path=THIS_DIRECTORY)
app.debug = environ.get('DEBUG') == 'true'
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if app.debug:
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    log.info("Starting Flask app IN DEBUG MODE...")
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else:
    log.info("Starting Flask app...")
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# SETUP JINJA2 TEMPLATE ENGINE ################################################

def static_global(filename):
    return url_for('static', filename=filename)


def shuffle_filter(seq):
    """
    This shuffles the sequence it is applied to.
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    Jinja2 _should_ provide this.
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    """
    try:
        result = list(seq)
        random.shuffle(result)
        return result
    except:
        return seq


def markdown_filter(value, nl2br=False, p=True):
    """
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    Converts markdown into html.
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    nl2br: set to True to replace line breaks with <br> tags
    p: set to False to remove the enclosing <p></p> tags
    """
    from markdown import markdown
    from markdown.extensions.nl2br import Nl2BrExtension
    from markdown.extensions.abbr import AbbrExtension
    extensions = [AbbrExtension()]
    if nl2br is True:
        extensions.append(Nl2BrExtension())
    markdowned = markdown(value, output_format='html5', extensions=extensions)
    if p is False:
        markdowned = markdowned.replace(r"<p>", "").replace(r"</p>", "")
    return markdowned


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_js_escapes = {
        '\\': '\\u005C',
        '\'': '\\u0027',
        '"': '\\u0022',
        '>': '\\u003E',
        '<': '\\u003C',
        '&': '\\u0026',
        '=': '\\u003D',
        '-': '\\u002D',
        ';': '\\u003B',
        u'\u2028': '\\u2028',
        u'\u2029': '\\u2029'
}
# Escape every ASCII character with a value less than 32.
_js_escapes.update(('%c' % z, '\\u%04X' % z) for z in xrange(32))


def escapejs_filter(value):
    escaped = []
    for letter in value:
        if letter in _js_escapes:
            escaped.append(_js_escapes[letter])
        else:
            escaped.append(letter)

    return Markup("".join(escaped))

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tpl_engine = Environment(loader=FileSystemLoader([get_path('view')]),
                         trim_blocks=True,
                         lstrip_blocks=True)

tpl_engine.globals.update(
    url_for=url_for,
    static=static_global,
)

tpl_engine.filters['markdown'] = markdown_filter
tpl_engine.filters['md'] = markdown_filter
tpl_engine.filters['shuffle'] = shuffle_filter
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tpl_engine.filters['escapejs'] = escapejs_filter
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tpl_global_vars = {
    'request': request,
    'version': version,
    'config': config,
    'now': datetime.datetime.now(),
}


# HELPERS #####################################################################

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def abort(code, message):
    log.error(message)
    abort_flask(code, message)


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def render_view(view, context=None):
    """
    A simple helper to render [view] template with [context] vars.
    It automatically adds the global template vars defined above, too.
    It returns a string, usually the HTML contents to display.
    """
    context = {} if context is None else context
    return tpl_engine.get_template(view).render(
        dict(tpl_global_vars.items() + context.items())
    )


# def render_page(page, title="My Page", context=None):
#     """
#     A simple helper to render the md_page.html template with [context] vars &
#     the additional contents of `page/[page].md` in the `md_page` variable.
#     It automagically adds the global template vars defined above, too.
#     It returns a string, usually the HTML contents to display.
#     """
#     if context is None:
#         context = {}
#     context['title'] = title
#     context['md_page'] = ''
#     with file(get_path('page/%s.md' % page)) as f:
#         context['md_page'] = f.read()
#     return tpl_engine.get_template('md_page.html').render(
#         dict(tpl_global_vars.items() + context.items())
#     )

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def is_list_in_list(needle, haystack):
    for n in needle:
        if n not in haystack:
            return False
    return True


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def round_time(dt=None, round_to=60):
    """
    Round a datetime object to any time laps in seconds
    dt : datetime.datetime object, default now.
    roundTo : Closest number of seconds to round to, default 1 minute.
    """
    if dt is None:
        dt = datetime.datetime.now()
    seconds = (dt.replace(tzinfo=None) - dt.min).seconds
    rounding = (seconds + round_to / 2) // round_to * round_to
    return dt + datetime.timedelta(0, rounding-seconds, -dt.microsecond)


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def datetime_from_list(time_list):
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    """
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    Datetimes in retrieved CDFs are stored as lists of numbers,
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    with DayOfYear starting at 0. We want it starting at 1 because it's what
    vendor parsers use, both in python and javascript.
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    """
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    # Day Of Year starts at 0, but for our datetime parser it starts at 1
    doy = '{:03d}'.format(int(''.join(time_list[4:7])) + 1)
    return datetime.datetime.strptime(
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        "%s%s%s" % (''.join(time_list[0:4]), doy, ''.join(time_list[7:-1])),
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        "%Y%j%H%M%S%f"
    )
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def get_local_filename(url):
    """
    Build the local cache filename for the distant file
    :param url: string
    :return: string
    """
    from slugify import slugify
    n = len('http://')
    if url.startswith('https'):
        n += 1
    s = url[n:]
    return slugify(s)


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def get_target_config(slug):
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    for s in config['targets']:  # dumb
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        if s['slug'] == slug:
            return s
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    raise Exception("No target found in configuration for '%s'." % slug)
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def check_target_config(slug):
    get_target_config(slug)


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def get_active_targets():
    all_targets = config['targets']
    return [t for t in all_targets if not ('locked' in t and t['locked'])]


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def retrieve_amda_netcdf(orbiter, what, started_at, stopped_at):
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    """
    Handles remote querying Myriam's API, downloading, extracting and caching
    the netCDF files.
    :param orbiter: key of the source in the YAML config
    :param what: either 'model' or 'orbit', a key in the config of the source
    :param started_at:
    :param stopped_at:
    :return: a list of local file paths to netCDF (.nc) files
    """

    url = config['amda'].format(
        dataSet=what,
        startTime=started_at.isoformat(),
        stopTime=stopped_at.isoformat()
    )
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    log.info("Fetching remote gzip files list at '%s'." % url)
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    retries = 0
    success = False
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    errors = []
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    remote_gzip_files = []
    while not success and retries < 3:
        try:
            response = urllib.urlopen(url)
            remote_gzip_files = json.loads(response.read())
            if not remote_gzip_files:
                raise Exception("Failed to fetch data at '%s'." % url)
            if remote_gzip_files == 'NODATASET':
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                raise Exception("API says there's no dataset at '%s'." % url)
            if remote_gzip_files == 'ERROR':
                raise Exception("API returned an error at '%s'." % url)
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            if remote_gzip_files == ['OUTOFTIME']:  # it happens
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                return []
                # raise Exception("API says it's out of time at '%s'." % url)
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            success = True
        except Exception as e:
            log.warn("Failed (%d/3) '%s' : %s" % (retries+1, url, e.message))
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            remote_gzip_files = []
            errors.append(e)
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        finally:
            retries += 1
    if not remote_gzip_files:
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        abort(400, "Failed to fetch gzip files list for %s at '%s' : %s" %
                   (orbiter, url, errors))
    else:
        remote_gzip_files = list(set(remote_gzip_files))
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    log.debug("Fetched remote gzip files list : %s." % str(remote_gzip_files))
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    local_gzip_files = []
    for remote_gzip_file in remote_gzip_files:
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        # hotfixes to remove when fixed upstream @Myriam
        if remote_gzip_file in ['OUTOFTIME', 'ERROR']:
            continue  # sometimes half the response is okay, the other not
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        if remote_gzip_file.endswith('/.gz'):
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            continue  # this is just a plain bug
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        remote_gzip_file = remote_gzip_file.replace('cdpp1', 'cdpp', 1)
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        ################################################
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        local_gzip_file = join(CACHE_DIR, get_local_filename(remote_gzip_file))
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        local_gzip_files.append(local_gzip_file)
        if not isfile(local_gzip_file):
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            log.debug("Retrieving '%s'..." % local_gzip_file)
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            urllib.urlretrieve(remote_gzip_file, local_gzip_file)
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            log.debug("Retrieved '%s'." % local_gzip_file)
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        else:
            log.debug("Found '%s' in the cache." % local_gzip_file)
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    local_netc_files = []
    for local_gzip_file in local_gzip_files:
        local_netc_file = local_gzip_file[0:-3]
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        log.debug("Unzipping '%s'..." % local_gzip_file)
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        success = True
        try:
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            with gzip.open(local_gzip_file) as f:
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                file_content = f.read()
                with open(local_netc_file, 'w+b') as g:
                    g.write(file_content)
        except Exception as e:
            success = False
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            log.error("Cannot process gz file '%s' from '%s' : %s" %
                      (local_gzip_file, url, e))
            # Sometimes, the downloaded gz is corrupted, and CRC checks fail.
            # We want to delete the local gz file and try again next time.
            removefile(local_gzip_file)
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        if success:
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            local_netc_files.append(local_netc_file)
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            log.debug("Unzipped '%s'." % local_gzip_file)
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    return list(set(local_netc_files))  # remove possible dupes
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def get_data_for_target(target_config, input_slug,
                        started_at, stopped_at):
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    """
    :return: dict whose keys are datetime as str, values tuples of data
    """
    log.debug("Grabbing data for '%s'..." % target_config['slug'])
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    try:
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        models = target_config['models'][input_slug]
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    except Exception as e:
        abort(500, "Invalid model configuration for '%s' : %s"
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              % (target_config['slug'], str(e)))
    try:
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        orbits = target_config['orbit']['models']
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    except KeyError as e:
        orbits = []
        # abort(500, "Invalid orbit configuration for '%s' : %s"
        #       % (target_config['slug'], str(e)))
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    def _sta_sto(_cnf, _sta, _sto):
        if 'started_at' in _cnf:
            _s0 = datetime.datetime.strptime(_cnf['started_at'], FILE_DATE_FMT)
            _s0 = max(_s0, _sta)
        else:
            _s0 = _sta
        if 'stopped_at' in _cnf:
            _s1 = datetime.datetime.strptime(_cnf['stopped_at'], FILE_DATE_FMT)
            _s1 = min(_s1, _sto)
        else:
            _s1 = _sto
aa7247d6   Goutte   Generate a CDF fi...
452
        return _s0, _s1
80352490   Goutte   Multi model suppo...
453

d1c44c51   Goutte   Enable Earth
454
455
456
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461
462
    def _read_var(_nc, _keys, _key, mandatory=False):
        try:
            return _nc.variables[_keys[_key]]
        except KeyError:
            pass
        if mandatory:
            raise Exception("No variable '%s' found in NetCDF." % _keys[_key])
        return [None] * len(_nc.variables['Time'])  # slow -- use numpy!

297a7dfc   Goutte   Add support for i...
463
    # Override these using the model configuration
d1c44c51   Goutte   Enable Earth
464
465
466
467
468
469
470
471
472
473
    default_nc_keys = {
        'hee': 'HEE',
        'vtot': 'V',
        'magn': 'B',
        'temp': 'T',
        'dens': 'N',
        'pdyn': 'P_dyn',
        'atse': 'Delta_angle',
    }

80352490   Goutte   Multi model suppo...
474
    precision = "%Y-%m-%dT%H"  # model and orbits times are only equal-ish
180d7d97   Goutte   Refactor heavily.
475
    orbit_data = {}  # keys are datetime as str, values arrays of XY
ea6c8d5d   Goutte   Add interval cons...
476
477

    for orbit in orbits:
58bfe281   Goutte   Handle start and ...
478
        s0, s1 = _sta_sto(orbit, started_at, stopped_at)
ea6c8d5d   Goutte   Add interval cons...
479

d1c44c51   Goutte   Enable Earth
480
481
482
483
        nc_keys = default_nc_keys.copy()
        if 'parameters' in orbit:
            nc_keys.update(orbit['parameters'])

ea6c8d5d   Goutte   Add interval cons...
484
485
486
487
488
489
490
491
        orbit_files = retrieve_amda_netcdf(
            target_config['slug'], orbit['slug'], s0, s1
        )
        for orbit_file in orbit_files:
            log.debug("%s: opening orbit NETCDF4 '%s'..." %
                      (target_config['name'], orbit_file))
            cdf_handle = Dataset(orbit_file, "r", format="NETCDF4")
            times = cdf_handle.variables['Time']  # YYYY DOY HH MM SS .ms
d1c44c51   Goutte   Enable Earth
492
            data_hee = _read_var(cdf_handle, nc_keys, 'hee', mandatory=True)
ea6c8d5d   Goutte   Add interval cons...
493
494
495

            log.debug("%s: aggregating data from '%s'..." %
                      (target_config['name'], orbit_file))
d1c44c51   Goutte   Enable Earth
496
            for ltime, datum_hee in zip(times, data_hee):
1324cc91   Goutte   Make the footer i...
497
                try:
d1c44c51   Goutte   Enable Earth
498
499
500
501
                    dtime = datetime_from_list(ltime)
                except Exception:
                    log.error("Failed to parse time from %s." % ltime)
                    raise
ea6c8d5d   Goutte   Add interval cons...
502
                if s0 <= dtime <= s1:
1324cc91   Goutte   Make the footer i...
503
                    dkey = round_time(dtime, 60*60).strftime(precision)
ea6c8d5d   Goutte   Add interval cons...
504
505
                    orbit_data[dkey] = datum_hee
            cdf_handle.close()
180d7d97   Goutte   Refactor heavily.
506

8644387c   Goutte   Use real data.
507
    all_data = {}  # keys are datetime as str, values tuples of data
58bfe281   Goutte   Handle start and ...
508
509
510
511
512
    for model in models:
        s0, s1 = _sta_sto(model, started_at, stopped_at)
        model_files = retrieve_amda_netcdf(
            target_config['slug'], model['slug'], s0, s1
        )
d1c44c51   Goutte   Enable Earth
513
514
515
516
        nc_keys = default_nc_keys.copy()
        if 'parameters' in model:
            nc_keys.update(model['parameters'])

58bfe281   Goutte   Handle start and ...
517
        for model_file in model_files:
58bfe281   Goutte   Handle start and ...
518
519
520
            log.debug("%s: opening model NETCDF4 '%s'..." %
                      (target_config['name'], model_file))
            cdf_handle = Dataset(model_file, "r", format="NETCDF4")
d1c44c51   Goutte   Enable Earth
521
            # log.debug(cdf_handle.variables.keys())
58bfe281   Goutte   Handle start and ...
522
            times = cdf_handle.variables['Time']  # YYYY DOY HH MM SS .ms
d1c44c51   Goutte   Enable Earth
523
524
525
526
527
528
529
530
531
532
533
534
535
536
537
538
            data_v = _read_var(cdf_handle, nc_keys, 'vtot')
            data_b = _read_var(cdf_handle, nc_keys, 'magn')
            data_t = _read_var(cdf_handle, nc_keys, 'temp')
            data_n = _read_var(cdf_handle, nc_keys, 'dens')
            data_p = _read_var(cdf_handle, nc_keys, 'pdyn')
            data_a = _read_var(cdf_handle, nc_keys, 'atse')

            # Usually:
            # Time, StartTime, StopTime, V, B, N, T, Delta_angle, P_dyn
            # Earth:
            # Time, BartelsNumber, ImfID, SwID, ImfPoints,
            # SwPoints, B_M_av, B_Vec_av, B_Theta_av,
            # B_Phi_av, B, T, N, V, Vlat, Vlon,
            # Alpha, RamP, E, Beta, Ma, Kp, R, DST,
            # AE, Flux, Flag, F10_Index, StartTime, StopTime

58bfe281   Goutte   Handle start and ...
539
540
            log.debug("%s: aggregating data from '%s'..." %
                      (target_config['name'], model_file))
d1c44c51   Goutte   Enable Earth
541
542
543
            for ltime, datum_v, datum_b, datum_t, datum_n, datum_p, datum_a \
                    in zip(times, data_v, data_b, data_t, data_n, data_p, data_a):

58bfe281   Goutte   Handle start and ...
544
                try:
d1c44c51   Goutte   Enable Earth
545
546
547
548
                    dtime = datetime_from_list(ltime)
                except Exception:
                    log.error("Failed to parse time from %s." % ltime)
                    raise
58bfe281   Goutte   Handle start and ...
549
550
                if s0 <= dtime <= s1:
                    dkey = round_time(dtime, 60*60).strftime(precision)
d1c44c51   Goutte   Enable Earth
551
552
553
554
555
556
557
558
559
560

                    if hasattr(datum_v, '__len__'):
                        vrad = datum_v[0]
                        vtan = datum_v[1]
                        vtot = sqrt(vrad * vrad + vtan * vtan)
                    else:  # eg: Earth
                        vrad = None
                        vtan = None
                        vtot = datum_v

58bfe281   Goutte   Handle start and ...
561
562
                    x_hee = None
                    y_hee = None
d1c44c51   Goutte   Enable Earth
563
564
565
                    if target_config['slug'] == 'earth':
                        x_hee = 1
                        y_hee = 0
58bfe281   Goutte   Handle start and ...
566
567
568
                    if dkey in orbit_data:
                        x_hee = orbit_data[dkey][0]
                        y_hee = orbit_data[dkey][1]
696037b4   Goutte   Fix an idiot bug ...
569
                    # /!\ MUST be in the same order as PROPERTIES
58bfe281   Goutte   Handle start and ...
570
571
                    all_data[dkey] = (
                        dtime.strftime("%Y-%m-%dT%H:%M:%S+00:00"),
d1c44c51   Goutte   Enable Earth
572
                        vrad, vtan, vtot,
696037b4   Goutte   Fix an idiot bug ...
573
                        datum_b, datum_t, datum_p, datum_n, datum_a,
58bfe281   Goutte   Handle start and ...
574
575
576
                        x_hee, y_hee
                    )
            cdf_handle.close()
8644387c   Goutte   Use real data.
577

180d7d97   Goutte   Refactor heavily.
578
579
580
    return all_data


297a7dfc   Goutte   Add support for i...
581
def generate_csv_contents(target_slug, input_slug, started_at, stopped_at):
180d7d97   Goutte   Refactor heavily.
582
583
584
585
586
587
    target_config = get_target_config(target_slug)
    log.debug("Crunching CSV contents for '%s'..." % target_config['name'])
    si = StringIO.StringIO()
    cw = csv_writer(si)
    cw.writerow(PROPERTIES)

297a7dfc   Goutte   Add support for i...
588
589
590
591
    all_data = get_data_for_target(
        target_config=target_config, input_slug=input_slug,
        started_at=started_at, stopped_at=stopped_at
    )
180d7d97   Goutte   Refactor heavily.
592
593

    log.debug("Writing and sorting CSV for '%s'..." % target_config['slug'])
8644387c   Goutte   Use real data.
594
595
    for dkey in sorted(all_data):
        cw.writerow(all_data[dkey])
2d2af24b   Goutte   Add a basic orbit...
596

180d7d97   Goutte   Refactor heavily.
597
    log.info("Generated CSV contents for '%s'." % target_config['slug'])
2d2af24b   Goutte   Add a basic orbit...
598
599
    return si.getvalue()

8644387c   Goutte   Use real data.
600

de97d643   Goutte   Fix more bugs.
601
602
def generate_csv_file_if_needed(target_slug, input_slug,
                                started_at, stopped_at):
297a7dfc   Goutte   Add support for i...
603
604
605
    filename = "%s_%s_%s_%s.csv" % (target_slug, input_slug,
                                    started_at.strftime(FILE_DATE_FMT),
                                    stopped_at.strftime(FILE_DATE_FMT))
e18701b6   Goutte   Cache clear (remo...
606
    local_csv_file = join(CACHE_DIR, filename)
80352490   Goutte   Multi model suppo...
607
608
609

    generate = True
    if isfile(local_csv_file):
297a7dfc   Goutte   Add support for i...
610
        # It needs to have more than one line to not be empty (headers)
80352490   Goutte   Multi model suppo...
611
612
613
614
615
616
617
618
619
        with open(local_csv_file) as f:
            cnt = 0
            for _ in f:
                cnt += 1
                if cnt > 1:
                    generate = False
                    break

    if generate:
c0df94bc   Goutte   Adding more logs.
620
621
622
        log.info("Generating CSV '%s'..." % local_csv_file)
        try:
            with open(local_csv_file, mode="w+") as f:
de97d643   Goutte   Fix more bugs.
623
624
625
626
                f.write(generate_csv_contents(
                    target_slug=target_slug, input_slug=input_slug,
                    started_at=started_at, stopped_at=stopped_at
                ))
c0df94bc   Goutte   Adding more logs.
627
628
            log.info("Generation of '%s' done." % filename)
        except Exception as e:
d1c44c51   Goutte   Enable Earth
629
630
631
            from sys import exc_info
            from traceback import extract_tb
            exc_type, exc_value, exc_traceback = exc_info()
dc0be992   Goutte   Support having no...
632
            log.error(e)
d1c44c51   Goutte   Enable Earth
633
634
            for trace in extract_tb(exc_traceback):
                log.error(trace)
5ede388f   Goutte   Make sure failed ...
635
            if isfile(local_csv_file):
92abc15b   Goutte   Mistrust the API ...
636
                log.warn("Removing failed CSV '%s'..." % local_csv_file)
5ede388f   Goutte   Make sure failed ...
637
                removefile(local_csv_file)
9bfa6c42   Goutte   More bug hunting.
638
            abort(500, "Failed creating CSV '%s' : %s" % (filename, e))
c0df94bc   Goutte   Adding more logs.
639
640


e18701b6   Goutte   Cache clear (remo...
641
642
643
644
645
646
647
648
649
650
651
652
653
654
655
656
657
658
659
660
661
662
663
def remove_all_files(in_directory):
    """
    Will throw if something horrible happens.
    Does not remove recursively (could be done with os.walk if needed).
    Does not remove directories either.
    :param in_directory: absolute path to directory
    :return:
    """
    import os

    if not os.path.isdir(in_directory):
        raise ValueError("No directory to clean at '%s'.")

    removed_files = []
    for file_name in os.listdir(in_directory):
        file_path = os.path.join(in_directory, file_name)
        if os.path.isfile(file_path):
            os.remove(file_path)
            removed_files.append(file_path)

    return removed_files


28bb4b28   Goutte   API for the cache...
664
665
def remove_files_created_before(date, in_directory):
    """
077980eb   Goutte   Improve availabil...
666
667
668
    Will throw if something horrible happens.
    Does not remove recursively (could be done with os.walk if needed).
    Does not remove directories either.
28bb4b28   Goutte   API for the cache...
669
    :param date: datetime object
077980eb   Goutte   Improve availabil...
670
    :param in_directory: absolute path to directory
28bb4b28   Goutte   API for the cache...
671
672
673
674
675
676
677
    :return:
    """
    import os
    import time

    secs = time.mktime(date.timetuple())

077980eb   Goutte   Improve availabil...
678
679
    if not os.path.isdir(in_directory):
        raise ValueError("No directory to clean at '%s'.")
28bb4b28   Goutte   API for the cache...
680
681
682
683

    removed_files = []
    for file_name in os.listdir(in_directory):
        file_path = os.path.join(in_directory, file_name)
077980eb   Goutte   Improve availabil...
684
685
686
687
688
        if os.path.isfile(file_path):
            t = os.stat(file_path)
            if t.st_ctime < secs:
                os.remove(file_path)
                removed_files.append(file_path)
28bb4b28   Goutte   API for the cache...
689
690
691
692

    return removed_files


297a7dfc   Goutte   Add support for i...
693
694
695
696
697
def get_input_slug_from_query(inp=None):
    if inp is None:
        input_slug = request.args.get('input_slug', 'l1')
    else:
        input_slug = inp
de97d643   Goutte   Fix more bugs.
698
    if input_slug not in [i['slug'] for i in config['inputs']]:
297a7dfc   Goutte   Add support for i...
699
700
701
702
        input_slug = 'l1'  # be tolerant instead of yelling loudly
    return input_slug


077980eb   Goutte   Improve availabil...
703
704
705
706
707
708
709
710
711
712
713
def get_hit_counter():
    hit_count_path = get_path("../VISITS")

    if isfile(hit_count_path):
        hit_count = int(open(hit_count_path).read())
    else:
        hit_count = 1

    return hit_count


a4a9ef03   Goutte   Cache generated C...
714
715
716
717
718
719
720
721
722
723
724
725
726
727
728
729
def increment_hit_counter():
    hit_count_path = get_path("../VISITS")

    if isfile(hit_count_path):
        hit_count = int(open(hit_count_path).read())
        hit_count += 1
    else:
        hit_count = 1

    hit_counter_file = open(hit_count_path, 'w')
    hit_counter_file.write(str(hit_count))
    hit_counter_file.close()

    return hit_count


4aaf6874   Goutte   Try fixing the ge...
730
731
732
733
734
735
736
737
738
739
740
741
742
743
744
def update_spacepy():
    """
    Importing pydcf will fail if the toolbox is not up to date.
    """
    environ['SPACEPY'] = CACHE_DIR
    environ['CDF_LIB'] = CDF_LIB
    try:
        log.info("Updating spacepy's toolbox…")
        import spacepy.toolbox

        spacepy.toolbox.update()
    except Exception as e:
        log.error("Failed to update spacepy : %s." % e)


077980eb   Goutte   Improve availabil...
745
746
747
tpl_global_vars['visits'] = get_hit_counter()


a4a9ef03   Goutte   Cache generated C...
748
749
750
# ROUTING #####################################################################

@app.route('/favicon.ico')
bde97e4d   Goutte   Add more changes ...
751
def favicon():  # we want it served from the root, not from static/
a4a9ef03   Goutte   Cache generated C...
752
753
754
755
756
757
758
759
760
761
    return send_from_directory(
        join(app.root_path, 'static', 'img'),
        'favicon.ico', mimetype='image/vnd.microsoft.icon'
    )


@app.route("/")
@app.route("/home.html")
@app.route("/index.html")
def home():
077980eb   Goutte   Improve availabil...
762
    increment_hit_counter()
bde97e4d   Goutte   Add more changes ...
763
764
    parameters = PARAMETERS.values()
    parameters.sort(key=lambda x: x['position'])
297a7dfc   Goutte   Add support for i...
765
    input_slug = get_input_slug_from_query()
a4a9ef03   Goutte   Cache generated C...
766
767
    return render_view('home.html.jinja2', {
        'targets': config['targets'],
a0e5bc71   Goutte   Keep trying to fi...
768
        'active_targets': [t for t in config['targets'] if not t['locked']],
bde97e4d   Goutte   Add more changes ...
769
        'parameters': parameters,
297a7dfc   Goutte   Add support for i...
770
        'input_slug': input_slug,
a4a9ef03   Goutte   Cache generated C...
771
772
773
        'planets': [s for s in config['targets'] if s['type'] == 'planet'],
        'probes':  [s for s in config['targets'] if s['type'] == 'probe'],
        'comets':  [s for s in config['targets'] if s['type'] == 'comet'],
077980eb   Goutte   Improve availabil...
774
        'visits':  get_hit_counter(),
a4a9ef03   Goutte   Cache generated C...
775
776
777
    })


297a7dfc   Goutte   Add support for i...
778
779
@app.route("/<target>_<inp>_<started_at>_<stopped_at>.csv")
def download_target_csv(target, inp, started_at, stopped_at):
a4a9ef03   Goutte   Cache generated C...
780
781
782
783
    """
    Grab data and orbit data for the specified `target`,
    rearrange it and return it as a CSV file.
    `started_at` and `stopped_at` should be UTC.
297a7dfc   Goutte   Add support for i...
784
    `inp` is the input slug, l1 or sa or sb.
a4a9ef03   Goutte   Cache generated C...
785
    """
180d7d97   Goutte   Refactor heavily.
786
    check_target_config(target)
a4a9ef03   Goutte   Cache generated C...
787
    try:
c0df94bc   Goutte   Adding more logs.
788
        started_at = datetime.datetime.strptime(started_at, FILE_DATE_FMT)
a4a9ef03   Goutte   Cache generated C...
789
790
791
    except:
        abort(400, "Invalid started_at parameter : '%s'." % started_at)
    try:
c0df94bc   Goutte   Adding more logs.
792
        stopped_at = datetime.datetime.strptime(stopped_at, FILE_DATE_FMT)
a4a9ef03   Goutte   Cache generated C...
793
794
    except:
        abort(400, "Invalid stopped_at parameter : '%s'." % stopped_at)
297a7dfc   Goutte   Add support for i...
795
    input_slug = get_input_slug_from_query(inp=inp)
a4a9ef03   Goutte   Cache generated C...
796

297a7dfc   Goutte   Add support for i...
797
798
799
    filename = "%s_%s_%s_%s.csv" % (target, input_slug,
                                    started_at.strftime(FILE_DATE_FMT),
                                    stopped_at.strftime(FILE_DATE_FMT))
e18701b6   Goutte   Cache clear (remo...
800
    local_csv_file = join(CACHE_DIR, filename)
297a7dfc   Goutte   Add support for i...
801
802
803
804
    generate_csv_file_if_needed(
        target_slug=target, input_slug=input_slug,
        started_at=started_at, stopped_at=stopped_at
    )
a4a9ef03   Goutte   Cache generated C...
805
806
807
    if not isfile(local_csv_file):
        abort(500, "Could not cache CSV file at '%s'." % local_csv_file)

e18701b6   Goutte   Cache clear (remo...
808
    return send_from_directory(CACHE_DIR, filename)
a4a9ef03   Goutte   Cache generated C...
809
810


297a7dfc   Goutte   Add support for i...
811
812
@app.route("/<targets>_<inp>_<started_at>_<stopped_at>.tar.gz")
def download_targets_tarball(targets, inp, started_at, stopped_at):
b2837a08   Goutte   Add three retries...
813
    """
bc18b96c   Goutte   Implement first (...
814
815
816
    Grab data and orbit data for each of the specified `targets`,
    in their own CSV file, and make a tarball of them.
    `started_at` and `stopped_at` should be UTC strings.
b2837a08   Goutte   Add three retries...
817

ea6c8d5d   Goutte   Add interval cons...
818
819
    Note: we do not use this route anymore, but let's keep it shelved for now.

2fedd73b   Goutte   Initial implement...
820
    targets: string list of targets' slugs, separated by `-`.
b2837a08   Goutte   Add three retries...
821
    """
2fedd73b   Goutte   Initial implement...
822
    separator = '-'
0511eed7   Goutte   Tarball generatio...
823
824
    targets = targets.split(separator)
    targets.sort()
2fedd73b   Goutte   Initial implement...
825
826
    targets_configs = []
    for target in targets:
b2837a08   Goutte   Add three retries...
827
828
        if not target:
            abort(400, "Invalid targets format : `%s`." % targets)
180d7d97   Goutte   Refactor heavily.
829
        targets_configs.append(get_target_config(target))
2fedd73b   Goutte   Initial implement...
830
    if 0 == len(targets_configs):
b2837a08   Goutte   Add three retries...
831
832
        abort(400, "No valid targets specified. What are you doing?")

b2837a08   Goutte   Add three retries...
833
    try:
ea6c8d5d   Goutte   Add interval cons...
834
        started_at = datetime.datetime.strptime(started_at, FILE_DATE_FMT)
b2837a08   Goutte   Add three retries...
835
836
837
    except:
        abort(400, "Invalid started_at parameter : '%s'." % started_at)
    try:
ea6c8d5d   Goutte   Add interval cons...
838
        stopped_at = datetime.datetime.strptime(stopped_at, FILE_DATE_FMT)
b2837a08   Goutte   Add three retries...
839
840
    except:
        abort(400, "Invalid stopped_at parameter : '%s'." % stopped_at)
ea6c8d5d   Goutte   Add interval cons...
841
842
    sta = started_at.strftime(FILE_DATE_FMT)
    sto = stopped_at.strftime(FILE_DATE_FMT)
b2837a08   Goutte   Add three retries...
843

297a7dfc   Goutte   Add support for i...
844
845
846
847
848
    input_slug = get_input_slug_from_query(inp=inp)

    gzip_filename = "%s_%s_%s_%s.tar.gz" % (
        separator.join(targets), input_slug, sta, sto
    )
e18701b6   Goutte   Cache clear (remo...
849
    local_gzip_file = join(CACHE_DIR, gzip_filename)
2fedd73b   Goutte   Initial implement...
850
851

    if not isfile(local_gzip_file):
0511eed7   Goutte   Tarball generatio...
852
        log.debug("Creating the CSV files for the tarball...")
2fedd73b   Goutte   Initial implement...
853
        for target_config in targets_configs:
297a7dfc   Goutte   Add support for i...
854
855
856
            filename = "%s_%s_%s_%s.csv" % (
                target_config['slug'], input_slug, sta, sto
            )
e18701b6   Goutte   Cache clear (remo...
857
            local_csv_file = join(CACHE_DIR, filename)
2fedd73b   Goutte   Initial implement...
858
859
            if not isfile(local_csv_file):
                with open(local_csv_file, mode="w+") as f:
297a7dfc   Goutte   Add support for i...
860
861
862
863
864
865
                    f.write(generate_csv_contents(
                        target_slug=target_config['slug'],
                        started_at=started_at,
                        stopped_at=stopped_at,
                        input_slug=input_slug
                    ))
2fedd73b   Goutte   Initial implement...
866

0511eed7   Goutte   Tarball generatio...
867
        log.debug("Creating the tarball '%s'..." % local_gzip_file)
2fedd73b   Goutte   Initial implement...
868
869
        with tarfile.open(local_gzip_file, "w:gz") as tar:
            for target_config in targets_configs:
297a7dfc   Goutte   Add support for i...
870
871
872
                filename = "%s_%s_%s_%s.csv" % (
                    target_config['slug'], input_slug, sta, sto
                )
e18701b6   Goutte   Cache clear (remo...
873
                local_csv_file = join(CACHE_DIR, filename)
2fedd73b   Goutte   Initial implement...
874
875
876
                tar.add(local_csv_file, arcname=filename)

    if not isfile(local_gzip_file):
0511eed7   Goutte   Tarball generatio...
877
        abort(500, "No tarball to serve. Looked at '%s'." % local_gzip_file)
2fedd73b   Goutte   Initial implement...
878

e18701b6   Goutte   Cache clear (remo...
879
    return send_from_directory(CACHE_DIR, gzip_filename)
b2837a08   Goutte   Add three retries...
880

28bb4b28   Goutte   API for the cache...
881

297a7dfc   Goutte   Add support for i...
882
883
@app.route("/<targets>_<inp>_<params>_<started_at>_<stopped_at>.nc")
def download_targets_netcdf(targets, inp, params, started_at, stopped_at):
bc18b96c   Goutte   Implement first (...
884
    """
4aaf6874   Goutte   Try fixing the ge...
885
886
    NOTE : This is not used anymore.
    
bc18b96c   Goutte   Implement first (...
887
    Grab data and orbit data for the specified `target`,
aa7247d6   Goutte   Generate a CDF fi...
888
    rearrange it and return it as a NetCDF file.
e18701b6   Goutte   Cache clear (remo...
889
    `started_at` and `stopped_at` are expected to be UTC.
bc18b96c   Goutte   Implement first (...
890
891
892
893

    targets: string list of targets' slugs, separated by `-`.
    params: string list of targets' parameters, separated by `-`.
    """
e18701b6   Goutte   Cache clear (remo...
894
    separator = '-'  # /!\ this char should never be in target's slugs
bc18b96c   Goutte   Implement first (...
895
896
897
898
899
900
901
902
903
    targets = targets.split(separator)
    targets.sort()
    targets_configs = []
    for target in targets:
        if not target:
            abort(400, "Invalid targets format : `%s`." % targets)
        targets_configs.append(get_target_config(target))
    if 0 == len(targets_configs):
        abort(400, "No valid targets specified. What are you doing?")
4aaf6874   Goutte   Try fixing the ge...
904

bc18b96c   Goutte   Implement first (...
905
906
907
908
909
910
911
    params = params.split(separator)
    params.sort()
    if 0 == len(params):
        abort(400, "No valid parameters specified. What are you doing?")
    if not is_list_in_list(params, PARAMETERS.keys()):
        abort(400, "Some parameters are not recognized in '%s'." % str(params))

57493104   Goutte   Add the time to t...
912
    date_fmt = FILE_DATE_FMT
bc18b96c   Goutte   Implement first (...
913
914
915
916
917
918
919
920
921
922
923
    try:
        started_at = datetime.datetime.strptime(started_at, date_fmt)
    except:
        abort(400, "Invalid started_at parameter : '%s'." % started_at)
    try:
        stopped_at = datetime.datetime.strptime(stopped_at, date_fmt)
    except:
        abort(400, "Invalid stopped_at parameter : '%s'." % stopped_at)
    sta = started_at.strftime(date_fmt)
    sto = stopped_at.strftime(date_fmt)

297a7dfc   Goutte   Add support for i...
924
925
926
927
928
    input_slug = get_input_slug_from_query(inp=inp)

    nc_filename = "%s_%s_%s_%s_%s.nc" % (
        separator.join(targets), separator.join(params), input_slug, sta, sto
    )
e18701b6   Goutte   Cache clear (remo...
929
    nc_path = join(CACHE_DIR, nc_filename)
bc18b96c   Goutte   Implement first (...
930
931
932
933
934

    if not isfile(nc_path):
        log.debug("Creating the NetCDF file '%s'..." % nc_filename)
        nc_handle = Dataset(nc_path, "w", format="NETCDF4")
        try:
ea6c8d5d   Goutte   Add interval cons...
935
            nc_handle.description = "Model and orbit data for targets"  # todo
bc18b96c   Goutte   Implement first (...
936
            nc_handle.history = "Created " + time.ctime(time.time())
ea6c8d5d   Goutte   Add interval cons...
937
            nc_handle.source = "Heliopropa (CDDP)"
bc18b96c   Goutte   Implement first (...
938
939
940
941
942
            available_params = list(PROPERTIES)
            for target in targets_configs:
                target_slug = target['slug']
                log.debug("Adding group '%s' to the NetCDF..." % target_slug)
                nc_group = nc_handle.createGroup(target_slug)
297a7dfc   Goutte   Add support for i...
943
944
945
946
                data = get_data_for_target(
                    target_config=target, input_slug=input_slug,
                    started_at=started_at, stopped_at=stopped_at
                )
bc18b96c   Goutte   Implement first (...
947
                dkeys = sorted(data)
ceeb2f4a   Goutte   Add the target co...
948
949
                dimension = 'dim_'+target_slug
                nc_handle.createDimension(dimension, len(dkeys))
57493104   Goutte   Add the time to t...
950
951

                # TIME #
ceeb2f4a   Goutte   Add the target co...
952
                nc_time = nc_group.createVariable('time', 'i8', (dimension,))
57493104   Goutte   Add the time to t...
953
954
955
956
957
958
959
960
961
962
963
964
                nc_time.units = "hours since 1970-01-01 00:00:00"
                nc_time.calendar = "standard"
                times = []
                for dkey in dkeys:
                    time_as_string = data[dkey][0][:-6]  # remove +00:00 tail
                    date = datetime.datetime.strptime(time_as_string, date_fmt)
                    times.append(date2num(
                        date, units=nc_time.units, calendar=nc_time.calendar
                    ))
                nc_time[:] = times

                # SELECTED PARAMETERS #
bc18b96c   Goutte   Implement first (...
965
966
967
968
                nc_vars = []
                indices = []
                for param in params:
                    indices.append(available_params.index(param))
ceeb2f4a   Goutte   Add the target co...
969
                    nc_var = nc_group.createVariable(param, 'f8', (dimension,))
5a6d4498   Goutte   Add a title to ea...
970
                    nc_var.units = PARAMETERS[param]['units']
bc18b96c   Goutte   Implement first (...
971
972
973
974
975
976
977
978
                    nc_vars.append(nc_var)
                for i, nc_var in enumerate(nc_vars):
                    index = indices[i]
                    values = []
                    for dkey in dkeys:
                        dval = data[dkey]
                        values.append(dval[index])
                    nc_var[:] = values
ceeb2f4a   Goutte   Add the target co...
979
980

                # ORBIT #
6491a1f1   Goutte   Fix up the bugs l...
981
                nc_x = nc_group.createVariable('xhee', 'f8', (dimension,))
ceeb2f4a   Goutte   Add the target co...
982
                nc_x.units = 'Au'
6491a1f1   Goutte   Fix up the bugs l...
983
                nc_y = nc_group.createVariable('yhee', 'f8', (dimension,))
ceeb2f4a   Goutte   Add the target co...
984
985
986
                nc_y.units = 'Au'
                values_x = []
                values_y = []
6491a1f1   Goutte   Fix up the bugs l...
987
988
                index_x = available_params.index('xhee')
                index_y = available_params.index('yhee')
ceeb2f4a   Goutte   Add the target co...
989
990
991
992
993
994
995
996
                for dkey in dkeys:
                    dval = data[dkey]
                    values_x.append(dval[index_x])
                    values_y.append(dval[index_y])
                nc_x[:] = values_x
                nc_y[:] = values_y
            log.debug("Writing NetCDF '%s'..." % nc_filename)

d1c44c51   Goutte   Enable Earth
997
        except Exception:
57493104   Goutte   Add the time to t...
998
            log.error("Failed to generate NetCDF '%s'." % nc_filename)
d1c44c51   Goutte   Enable Earth
999
            raise
bc18b96c   Goutte   Implement first (...
1000
1001
1002
1003
1004
1005
        finally:
            nc_handle.close()

    if not isfile(nc_path):
        abort(500, "No NetCDF to serve. Looked at '%s'." % nc_path)

e18701b6   Goutte   Cache clear (remo...
1006
    return send_from_directory(CACHE_DIR, nc_filename)
bc18b96c   Goutte   Implement first (...
1007
1008


297a7dfc   Goutte   Add support for i...
1009
1010
@app.route("/<targets>_<inp>_<started_at>_<stopped_at>.cdf")
def download_targets_cdf(targets, inp, started_at, stopped_at):
aa7247d6   Goutte   Generate a CDF fi...
1011
1012
1013
1014
1015
1016
1017
1018
1019
1020
1021
1022
1023
1024
1025
1026
1027
1028
1029
1030
    """
    Grab data and orbit data for the specified `target`,
    rearrange it and return it as a CDF file.
    `started_at` and `stopped_at` are expected to be UTC.

    targets: string list of targets' slugs, separated by `-`.
    params: string list of targets' parameters, separated by `-`.
    """
    separator = '-'  # /!\ this char should never be in target's slugs
    targets = targets.split(separator)
    targets.sort()
    targets_configs = []
    for target in targets:
        if not target:
            abort(400, "Invalid targets format : `%s`." % targets)
        targets_configs.append(get_target_config(target))
    if 0 == len(targets_configs):
        abort(400, "No valid targets specified. What are you doing?")

    params = PARAMETERS.keys()
aa7247d6   Goutte   Generate a CDF fi...
1031
1032
1033
1034
1035
1036
1037
1038
1039
1040
1041
1042

    try:
        started_at = datetime.datetime.strptime(started_at, FILE_DATE_FMT)
    except:
        abort(400, "Invalid started_at parameter : '%s'." % started_at)
    try:
        stopped_at = datetime.datetime.strptime(stopped_at, FILE_DATE_FMT)
    except:
        abort(400, "Invalid stopped_at parameter : '%s'." % stopped_at)
    sta = started_at.strftime(FILE_DATE_FMT)
    sto = stopped_at.strftime(FILE_DATE_FMT)

297a7dfc   Goutte   Add support for i...
1043
1044
1045
1046
1047
    input_slug = get_input_slug_from_query(inp=inp)

    cdf_filename = "%s_%s_%s_%s.cdf" % (
        separator.join(targets), input_slug, sta, sto
    )
aa7247d6   Goutte   Generate a CDF fi...
1048
1049
1050
1051
    cdf_path = join(CACHE_DIR, cdf_filename)

    if not isfile(cdf_path):
        log.debug("Creating the CDF file '%s'..." % cdf_filename)
604616e4   Goutte   Misc changes from...
1052
        try:
8a48d5fa   Goutte   Make sure spacepy...
1053
            from spacepy import pycdf
4aaf6874   Goutte   Try fixing the ge...
1054
1055
1056
1057
1058
1059
1060
1061
1062
1063
        except ImportError:
            # If spacepy's toolbox is not up-to-date, importing will fail.
            # So, let's update and try again !
            update_spacepy()
            try:
                from spacepy import pycdf
            except ImportError as e:
                log.error("Failed to import pycdf from spacepy : %s" % e)
                raise

8a48d5fa   Goutte   Make sure spacepy...
1064
        try:
952e3d8f   Goutte   Move to another s...
1065
            cdf_handle = pycdf.CDF(cdf_path, masterpath='')
aa7247d6   Goutte   Generate a CDF fi...
1066
1067
            description = "Model and orbit data for %s." % \
                ', '.join([t['name'] for t in targets_configs])
952e3d8f   Goutte   Move to another s...
1068
1069
1070
            cdf_handle.attrs['Description'] = description
            cdf_handle.attrs['Author'] = "Heliopropa.irap.omp.eu (CDPP)"
            cdf_handle.attrs['Created'] = str(time.ctime(time.time()))
aa7247d6   Goutte   Generate a CDF fi...
1071
1072
1073
1074

            available_params = list(PROPERTIES)
            for target in targets_configs:
                target_slug = target['slug']
297a7dfc   Goutte   Add support for i...
1075
1076
1077
1078
                data = get_data_for_target(
                    target_config=target, input_slug=input_slug,
                    started_at=started_at, stopped_at=stopped_at
                )
aa7247d6   Goutte   Generate a CDF fi...
1079
1080
1081
                dkeys = sorted(data)

                values = []
aa7247d6   Goutte   Generate a CDF fi...
1082
                for dkey in dkeys:
952e3d8f   Goutte   Move to another s...
1083
1084
1085
1086
                    time_str = data[dkey][0][:-6]  # remove +00:00 tail
                    date = datetime.datetime.strptime(time_str, FILE_DATE_FMT)
                    values.append(date)
                kt = "%s_time" % target_slug
4aaf6874   Goutte   Try fixing the ge...
1087
                cdf_handle.new(kt, type=pycdf.const.CDF_EPOCH)
952e3d8f   Goutte   Move to another s...
1088
                cdf_handle[kt] = values
4aaf6874   Goutte   Try fixing the ge...
1089
                # cdf_handle[kt].attrs['FIELDNAM'] = "Time since 0 A.D"
aa7247d6   Goutte   Generate a CDF fi...
1090
1091
1092

                for param in params:
                    k = "%s_%s" % (target_slug, param)
4aaf6874   Goutte   Try fixing the ge...
1093
                    # print("PARAM %s" % k)
aa7247d6   Goutte   Generate a CDF fi...
1094
1095
                    values = []
                    i = available_params.index(param)
4aaf6874   Goutte   Try fixing the ge...
1096
                    has_nones = False
aa7247d6   Goutte   Generate a CDF fi...
1097
                    for dkey in dkeys:
4aaf6874   Goutte   Try fixing the ge...
1098
1099
1100
1101
1102
1103
1104
1105
1106
                        value = data[dkey][i]
                        if value is None:
                            has_nones = True
                        values.append(value)
                    if has_nones:
                        # PyCDF hates it when there are Nones.
                        # Since we don't know what value to set instead,
                        # let's skip the param altogether.
                        continue
aa7247d6   Goutte   Generate a CDF fi...
1107
                    cdf_handle[k] = values
952e3d8f   Goutte   Move to another s...
1108
1109
1110
1111
1112
1113
1114
1115
1116
1117
                    attrs = cdf_handle[k].attrs
                    attrs['UNITS'] = PARAMETERS[param]['units']
                    attrs['LABLAXIS'] = PARAMETERS[param]['name']
                    attrs['FIELDNAM'] = PARAMETERS[param]['title']
                    if values:
                        attrs['VALIDMIN'] = min(values)
                        attrs['VALIDMAX'] = max(values)

                kx = "%s_xhee" % target_slug
                ky = "%s_yhee" % target_slug
aa7247d6   Goutte   Generate a CDF fi...
1118
1119
1120
1121
1122
                values_xhee = []
                values_yhee = []
                index_x = available_params.index('xhee')
                index_y = available_params.index('yhee')
                for dkey in dkeys:
391d581c   Goutte   Make the CDF down...
1123
1124
1125
                    value_xhee = data[dkey][index_x]
                    value_yhee = data[dkey][index_y]
                    # We've got some `None`s cropping up in the data sometimes.
4aaf6874   Goutte   Try fixing the ge...
1126
                    # PyCDF does not digest Nones at all.
391d581c   Goutte   Make the CDF down...
1127
1128
1129
1130
1131
                    # While they solve this upstream, let's make an ugly fix!
                    if (value_xhee is not None) and (value_yhee is not None):
                        values_xhee.append(value_xhee)
                        values_yhee.append(value_yhee)
                    else:
4aaf6874   Goutte   Try fixing the ge...
1132
1133
                        values_xhee.append(0)
                        values_yhee.append(0)
391d581c   Goutte   Make the CDF down...
1134
                        log.warn("Orbit data for %s has NaNs." % target_slug)
952e3d8f   Goutte   Move to another s...
1135
1136
1137
1138
                cdf_handle[kx] = values_xhee
                cdf_handle[ky] = values_yhee
                cdf_handle[kx].attrs['UNITS'] = 'Au'
                cdf_handle[ky].attrs['UNITS'] = 'Au'
aa7247d6   Goutte   Generate a CDF fi...
1139
1140

            log.debug("Writing CDF '%s'..." % cdf_filename)
952e3d8f   Goutte   Move to another s...
1141
1142
            cdf_handle.close()
            log.debug("Wrote CDF '%s'." % cdf_filename)
aa7247d6   Goutte   Generate a CDF fi...
1143
1144
1145

        except Exception as e:
            log.error("Failed to generate CDF '%s'." % cdf_filename)
952e3d8f   Goutte   Move to another s...
1146
1147
            if isfile(cdf_path):
                removefile(cdf_path)
aa7247d6   Goutte   Generate a CDF fi...
1148
1149
            raise

aa7247d6   Goutte   Generate a CDF fi...
1150
1151
1152
1153
1154
1155
    if not isfile(cdf_path):
        abort(500, "No CDF to serve. Looked at '%s'." % cdf_path)

    return send_from_directory(CACHE_DIR, cdf_filename)


28bb4b28   Goutte   API for the cache...
1156
1157
# API #########################################################################

e18701b6   Goutte   Cache clear (remo...
1158
1159
1160
1161
1162
1163
1164
1165
1166
1167
1168
1169
@app.route("/cache/clear")
def cache_clear():
    """
    Removes all files from the cache.
    Note: It also removes the .gitkeep file. Not a problem for prod.
    """
    removed_files = remove_all_files(CACHE_DIR)
    count = len(removed_files)
    return "Cache cleared! Removed %d file%s." \
           % (count, 's' if count != 1 else '')


d9710a98   Goutte   Rename the cleanu...
1170
1171
@app.route("/cache/cleanup")
def cache_cleanup():
28bb4b28   Goutte   API for the cache...
1172
1173
    """
    Removes all files from the cache that are older than roughly one month.
e18701b6   Goutte   Cache clear (remo...
1174
    Note: It also removes the .gitkeep file. Maybe it should not, but hey.
28bb4b28   Goutte   API for the cache...
1175
1176
    """
    a_month_ago = datetime.datetime.now() - datetime.timedelta(days=32)
e18701b6   Goutte   Cache clear (remo...
1177
    removed_files = remove_files_created_before(a_month_ago, CACHE_DIR)
d9710a98   Goutte   Rename the cleanu...
1178
1179
1180
    count = len(removed_files)
    return "Cache cleaned! Removed %d old file%s." \
           % (count, 's' if count != 1 else '')
28bb4b28   Goutte   API for the cache...
1181
1182


b500e561   Goutte   Invert the orbits...
1183
1184
1185
1186
@app.route("/cache/warmup")
def cache_warmup():
    """
    Warms up the cache for the current day.
927c69c3   Goutte   Make the local ca...
1187
    Linked to SpaceWeather#edit in swapp.ls to get the default time interval.
e18701b6   Goutte   Cache clear (remo...
1188
    If you edit this code you'll need to edit the other as well and vice versa.
b500e561   Goutte   Invert the orbits...
1189
    """
390a3587   Goutte   Add a CRON config...
1190
    warmup_started_at = datetime.datetime.now()
780828a8   Goutte   Prepare horizonta...
1191
1192
    before = relativedelta(months=2)
    after = relativedelta(months=1)
fb383448   Goutte   Implement the cac...
1193
1194
1195
1196
1197
    today = datetime.datetime.now().replace(hour=0, minute=0, second=0)
    started_at = today - before
    stopped_at = today + after
    sta = started_at.strftime(FILE_DATE_FMT)
    sto = stopped_at.strftime(FILE_DATE_FMT)
297a7dfc   Goutte   Add support for i...
1198
    inp = 'l1'  # default input, maybe warm them all up ?
fb383448   Goutte   Implement the cac...
1199
1200

    targets = get_active_targets()
fb383448   Goutte   Implement the cac...
1201
1202
    targets_slugs = [target['slug'] for target in targets]
    targets_slugs.sort()
4aaf6874   Goutte   Try fixing the ge...
1203
1204
1205
1206

    update_spacepy()
    for target in targets:
        download_target_csv(target['slug'], inp, sta, sto)
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    download_targets_cdf('-'.join(targets_slugs), inp, sta, sto)
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    warmup_ended_at = datetime.datetime.now()
    warmup_timedelta = warmup_ended_at - warmup_started_at

    return "Done in %s." % str(warmup_timedelta)
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@app.route("/log")
def log_show():
    with open(LOG_FILE, 'r') as f:
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        contents = f.read()
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    return "<pre>" + contents + "</pre>"
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@app.route("/log/clear")
def log_clear():
    with open(LOG_FILE, 'w') as f:
        f.truncate()
    return "Log cleared successfully."


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# DEV TOOLS ###################################################################

# @app.route("/inspect")
# def analyze_cdf():
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#     """
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#     For debug purposes.
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#     """
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#     cdf_to_inspect = get_path("../res/dummy.nc")
#     cdf_to_inspect = get_path("../res/dummy_jupiter_coordinates.nc")
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#
#     si = StringIO.StringIO()
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#     cw = csv.DictWriter(si, fieldnames=['Name', 'Shape', 'Length'])
#     cw.writeheader()
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#
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#     # Time, StartTime, StopTime, V, B, N, T, Delta_angle, P_dyn, QualityFlag
#     cdf_handle = Dataset(cdf_to_inspect, "r", format="NETCDF4")
#     for variable in cdf_handle.variables:
#         v = cdf_handle.variables[variable]
#         cw.writerow({
#             'Name': variable,
#             'Shape': v.shape,
#             'Length': v.size,
#         })
#     cdf_handle.close()
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#
#     return si.getvalue()


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# MAIN ########################################################################

if __name__ == "__main__":
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    # Debug mode is on, as the production server does not use this but run.wsgi
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    extra_files = [get_path('../config.yml')]
    app.run(debug=True, extra_files=extra_files)