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web/run.py 50.9 KB
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# coding=utf-8

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import StringIO
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import datetime
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import gzip
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import json
import logging
import random
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import tarfile
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import time
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import urllib
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from csv import writer as csv_writer
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from math import sqrt, isnan
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from os import environ, remove as removefile
from os.path import isfile, join, abspath, dirname

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from dateutil.relativedelta import relativedelta
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from flask import Flask
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from flask import request
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from flask import url_for, send_from_directory, abort as abort_flask
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from jinja2 import Environment, FileSystemLoader, Markup
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from netCDF4 import Dataset, date2num
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from yaml import load as yaml_load
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# PATH RELATIVITY #############################################################

THIS_DIRECTORY = dirname(abspath(__file__))


def get_path(relative_path):
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    """Get an absolute path from the relative path to this script directory."""
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    return abspath(join(THIS_DIRECTORY, relative_path))


# COLLECT GLOBAL INFORMATION FROM SOURCES #####################################

# VERSION
with open(get_path('../VERSION'), 'r') as version_file:
    version = version_file.read().strip()

# CONFIG
with open(get_path('../config.yml'), 'r') as config_file:
    config = yaml_load(config_file.read())

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FILE_DATE_FMT = "%Y-%m-%dT%H:%M:%S"
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MOMENT_DATE_FMT = "%Y-%m-%dT%H:%M:%SZ"
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# LOGGING #####################################################################

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LOG_FILE = get_path('run.log')

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log = logging.getLogger("HelioPropa")
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log.setLevel(logging.DEBUG)
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# log.setLevel(logging.ERROR)                        # <-- set log level here !
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logHandler = logging.FileHandler(LOG_FILE)
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logHandler.setFormatter(logging.Formatter(
    "%(asctime)s - %(levelname)s - %(message)s"
))
log.addHandler(logHandler)
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# HARDCODED CONFIGURATION #####################################################

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ASTRONOMICAL_UNIT_IN_KM = 1.496e8

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# Absolute path to the installed CDF library from https://cdf.gsfc.nasa.gov/
CDF_LIB = '/usr/local/lib/libcdf'

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# Absolute path to the data cache directory
CACHE_DIR = get_path('../cache')

# These two configs are not in the YAML config because adding a new parameter
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# will not work as-is, you'd have to edit some netcdf-related code.
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# The slugs of the available parameters in the generated CSV files.
# The order matters. If you change this you also need to change the
# innermost loop of `get_data_for_target`.
# The javascript knows the targets' properties under these names.
PROPERTIES = ('time', 'vrad', 'vtan', 'vtot', 'btan', 'temp', 'pdyn', 'dens',
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              'atse', 'xhee', 'yhee')
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# The parameters that the users can handle.
# The slug MUST be one of the properties above.
PARAMETERS = {
    'pdyn': {
        'slug': 'pdyn',
        'name': 'Dyn. Pressure',
        'title': 'The dynamic pressure.',
        'units': 'nPa',
        'active': True,
        'position': 10,
    },
    'vtot': {
        'slug': 'vtot',
        'name': 'Velocity',
        'title': 'The velocity of the particles.',
        'units': 'km/s',
        'active': False,
        'position': 20,
    },
    'btan': {
        'slug': 'btan',
        'name': 'B Tangential',
        'title': 'B Tangential.',
        'units': 'nT',
        'active': False,
        'position': 30,
    },
    'temp': {
        'slug': 'temp',
        'name': 'Temperature',
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        'title': 'The temperature.',
        'units': 'eV',
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        'active': False,
        'position': 40,
    },
    'dens': {
        'slug': 'dens',
        'name': 'Density',
        'title': 'The density N.',
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        'units': 'cm^-3',
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        'active': False,
        'position': 50,
    },
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    'atse': {
        'slug': 'atse',
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        'name': 'Angle T-S-E',
        'title': 'Angle Target-Sun-Earth.',
        'units': 'deg',
        'active': False,
        'position': 60,
    },
}


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# ENV #########################################################################

environ['SPACEPY'] = CACHE_DIR
environ['CDF_LIB'] = CDF_LIB


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# SETUP FLASK ENGINE ##########################################################

app = Flask(__name__, root_path=THIS_DIRECTORY)
app.debug = environ.get('DEBUG') == 'true'
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if app.debug:
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    log.info("Starting Flask app IN DEBUG MODE...")
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else:
    log.info("Starting Flask app...")
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# SETUP JINJA2 TEMPLATE ENGINE ################################################

def static_global(filename):
    return url_for('static', filename=filename)


def shuffle_filter(seq):
    """
    This shuffles the sequence it is applied to.
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    Jinja2 _should_ provide this.
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    """
    try:
        result = list(seq)
        random.shuffle(result)
        return result
    except:
        return seq


def markdown_filter(value, nl2br=False, p=True):
    """
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    Converts markdown into html.
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    nl2br: set to True to replace line breaks with <br> tags
    p: set to False to remove the enclosing <p></p> tags
    """
    from markdown import markdown
    from markdown.extensions.nl2br import Nl2BrExtension
    from markdown.extensions.abbr import AbbrExtension
    extensions = [AbbrExtension()]
    if nl2br is True:
        extensions.append(Nl2BrExtension())
    markdowned = markdown(value, output_format='html5', extensions=extensions)
    if p is False:
        markdowned = markdowned.replace(r"<p>", "").replace(r"</p>", "")
    return markdowned


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_js_escapes = {
        '\\': '\\u005C',
        '\'': '\\u0027',
        '"': '\\u0022',
        '>': '\\u003E',
        '<': '\\u003C',
        '&': '\\u0026',
        '=': '\\u003D',
        '-': '\\u002D',
        ';': '\\u003B',
        u'\u2028': '\\u2028',
        u'\u2029': '\\u2029'
}
# Escape every ASCII character with a value less than 32.
_js_escapes.update(('%c' % z, '\\u%04X' % z) for z in xrange(32))


def escapejs_filter(value):
    escaped = []
    for letter in value:
        if letter in _js_escapes:
            escaped.append(_js_escapes[letter])
        else:
            escaped.append(letter)

    return Markup("".join(escaped))

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tpl_engine = Environment(loader=FileSystemLoader([get_path('view')]),
                         trim_blocks=True,
                         lstrip_blocks=True)

tpl_engine.globals.update(
    url_for=url_for,
    static=static_global,
)

tpl_engine.filters['markdown'] = markdown_filter
tpl_engine.filters['md'] = markdown_filter
tpl_engine.filters['shuffle'] = shuffle_filter
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tpl_engine.filters['escapejs'] = escapejs_filter
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tpl_global_vars = {
    'request': request,
    'version': version,
    'config': config,
    'now': datetime.datetime.now(),
}


# HELPERS #####################################################################

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def abort(code, message):
    log.error(message)
    abort_flask(code, message)


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def render_view(view, context=None):
    """
    A simple helper to render [view] template with [context] vars.
    It automatically adds the global template vars defined above, too.
    It returns a string, usually the HTML contents to display.
    """
    context = {} if context is None else context
    return tpl_engine.get_template(view).render(
        dict(tpl_global_vars.items() + context.items())
    )


# def render_page(page, title="My Page", context=None):
#     """
#     A simple helper to render the md_page.html template with [context] vars &
#     the additional contents of `page/[page].md` in the `md_page` variable.
#     It automagically adds the global template vars defined above, too.
#     It returns a string, usually the HTML contents to display.
#     """
#     if context is None:
#         context = {}
#     context['title'] = title
#     context['md_page'] = ''
#     with file(get_path('page/%s.md' % page)) as f:
#         context['md_page'] = f.read()
#     return tpl_engine.get_template('md_page.html').render(
#         dict(tpl_global_vars.items() + context.items())
#     )

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def is_list_in_list(needle, haystack):
    for n in needle:
        if n not in haystack:
            return False
    return True


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def round_time(dt=None, round_to=60):
    """
    Round a datetime object to any time laps in seconds
    dt : datetime.datetime object, default now.
    roundTo : Closest number of seconds to round to, default 1 minute.
    """
    if dt is None:
        dt = datetime.datetime.now()
    seconds = (dt.replace(tzinfo=None) - dt.min).seconds
    rounding = (seconds + round_to / 2) // round_to * round_to
    return dt + datetime.timedelta(0, rounding-seconds, -dt.microsecond)


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def datetime_from_list(time_list):
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    """
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    Datetimes in retrieved CDFs are stored as lists of numbers,
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    with DayOfYear starting at 0. We want it starting at 1 because it's what
    vendor parsers use, both in python and javascript.
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    """
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    # Day Of Year starts at 0, but for our datetime parser it starts at 1
    doy = '{:03d}'.format(int(''.join(time_list[4:7])) + 1)
    return datetime.datetime.strptime(
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        "%s%s%s" % (''.join(time_list[0:4]), doy, ''.join(time_list[7:-1])),
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        "%Y%j%H%M%S%f"
    )
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def get_local_filename(url):
    """
    Build the local cache filename for the distant file
    :param url: string
    :return: string
    """
    from slugify import slugify
    n = len('http://')
    if url.startswith('https'):
        n += 1
    s = url[n:]
    return slugify(s)


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def get_target_config(slug):
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    for s in config['targets']:  # dumb
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        if s['slug'] == slug:
            return s
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    raise Exception("No target found in configuration for '%s'." % slug)
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def check_target_config(slug):
    get_target_config(slug)


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def get_active_targets():
    all_targets = config['targets']
    return [t for t in all_targets if not ('locked' in t and t['locked'])]


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def retrieve_amda_netcdf(orbiter, what, started_at, stopped_at):
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    """
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    Handles remote querying AMDA's API for URLs, and then downloading,
    extracting and caching the netCDF files.
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    :param orbiter: key of the source in the YAML config
    :param what: either 'model' or 'orbit', a key in the config of the source
    :param started_at:
    :param stopped_at:
    :return: a list of local file paths to netCDF (.nc) files
    """

    url = config['amda'].format(
        dataSet=what,
        startTime=started_at.isoformat(),
        stopTime=stopped_at.isoformat()
    )
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    log.info("Fetching remote gzip files list at '%s'." % url)
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    retries = 0
    success = False
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    errors = []
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    remote_gzip_files = []
    while not success and retries < 3:
        try:
            response = urllib.urlopen(url)
            remote_gzip_files = json.loads(response.read())
            if not remote_gzip_files:
                raise Exception("Failed to fetch data at '%s'." % url)
            if remote_gzip_files == 'NODATASET':
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                raise Exception("API says there's no dataset at '%s'." % url)
            if remote_gzip_files == 'ERROR':
                raise Exception("API returned an error at '%s'." % url)
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            if remote_gzip_files == ['OUTOFTIME']:  # it happens
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                return []
                # raise Exception("API says it's out of time at '%s'." % url)
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            success = True
        except Exception as e:
            log.warn("Failed (%d/3) '%s' : %s" % (retries+1, url, e.message))
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            remote_gzip_files = []
            errors.append(e)
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        finally:
            retries += 1
    if not remote_gzip_files:
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        log.error("Failed to fetch gzip files list for %s at '%s' : %s" %
                   (orbiter, url, errors))
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        abort(400, "Failed to fetch gzip files list for %s at '%s' : %s" %
                   (orbiter, url, errors))
    else:
        remote_gzip_files = list(set(remote_gzip_files))
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    log.debug("Fetched remote gzip files list : %s." % str(remote_gzip_files))
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    local_gzip_files = []
    for remote_gzip_file in remote_gzip_files:
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        # hotfixes to remove when fixed upstream @Myriam
        if remote_gzip_file in ['OUTOFTIME', 'ERROR']:
            continue  # sometimes half the response is okay, the other not
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        if remote_gzip_file.endswith('/.gz'):
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            continue  # this is just a plain bug
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        remote_gzip_file = remote_gzip_file.replace('cdpp1', 'cdpp', 1)
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        ################################################
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        local_gzip_file = join(CACHE_DIR, get_local_filename(remote_gzip_file))
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        local_gzip_files.append(local_gzip_file)
        if not isfile(local_gzip_file):
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            log.debug("Retrieving '%s'..." % local_gzip_file)
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            urllib.urlretrieve(remote_gzip_file, local_gzip_file)
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            log.debug("Retrieved '%s'." % local_gzip_file)
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        else:
            log.debug("Found '%s' in the cache." % local_gzip_file)
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    local_netc_files = []
    for local_gzip_file in local_gzip_files:
        local_netc_file = local_gzip_file[0:-3]
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        log.debug("Unzipping '%s'..." % local_gzip_file)
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        success = True
        try:
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            with gzip.open(local_gzip_file) as f:
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                file_content = f.read()
                with open(local_netc_file, 'w+b') as g:
                    g.write(file_content)
        except Exception as e:
            success = False
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            log.error("Cannot process gz file '%s' from '%s' : %s" %
                      (local_gzip_file, url, e))
            # Sometimes, the downloaded gz is corrupted, and CRC checks fail.
            # We want to delete the local gz file and try again next time.
            removefile(local_gzip_file)
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        if success:
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            local_netc_files.append(local_netc_file)
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            log.debug("Unzipped '%s'." % local_gzip_file)
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    return list(set(local_netc_files))  # remove possible dupes
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# class DataParser:
#     """
#     Default data parser
#     A wip to try to handle code exeptions sanely.
#     """
#
#     # Override these using the model configuration
#     default_nc_keys = {
#         'hee': 'HEE',
#         'vtot': 'V',
#         'magn': 'B',
#         'temp': 'T',
#         'dens': 'N',
#         'pdyn': 'P_dyn',
#         'atse': 'Delta_angle',
#     }
#
#     def __init__(self, target, model):
#         self.target = target
#         self.model = model
#         pass
#
#     def _read_var(self, nc, _keys, _key, mandatory=False):
#         try:
#             return nc.variables[_keys[_key]]
#         except KeyError:
#             pass
#         if mandatory:
#             raise Exception("No variable '%s' found in NetCDF." % _keys[_key])
#         return [None] * len(nc.variables['Time'])  # slow -- use numpy?
#
#     def parse(self, cdf_handle):
#         nc_keys = self.default_nc_keys.copy()
#
#         times = cdf_handle.variables['Time']  # YYYY DOY HH MM SS .ms
#         data_v = self._read_var(cdf_handle, nc_keys, 'vtot')
#         data_b = self._read_var(cdf_handle, nc_keys, 'magn')
#         data_t = self._read_var(cdf_handle, nc_keys, 'temp')
#         data_n = self._read_var(cdf_handle, nc_keys, 'dens')
#         data_p = self._read_var(cdf_handle, nc_keys, 'pdyn')
#         data_a = self._read_var(cdf_handle, nc_keys, 'atse')
#
#         return zip()


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def get_data_for_target(target_config, input_slug,
                        started_at, stopped_at):
180d7d97   Goutte   Refactor heavily.
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484
    """
    :return: dict whose keys are datetime as str, values tuples of data
    """
    log.debug("Grabbing data for '%s'..." % target_config['slug'])
80352490   Goutte   Multi model suppo...
485

8644387c   Goutte   Use real data.
486
    try:
297a7dfc   Goutte   Add support for i...
487
        models = target_config['models'][input_slug]
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488
489
    except Exception as e:
        abort(500, "Invalid model configuration for '%s' : %s"
180d7d97   Goutte   Refactor heavily.
490
491
              % (target_config['slug'], str(e)))
    try:
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492
        orbits = target_config['orbit']['models']
d1c44c51   Goutte   Enable Earth
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    except KeyError as e:
        orbits = []
        # abort(500, "Invalid orbit configuration for '%s' : %s"
        #       % (target_config['slug'], str(e)))
28ef3790   Goutte   Clean up.
497

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    def _sta_sto(_cnf, _sta, _sto):
        if 'started_at' in _cnf:
            _s0 = datetime.datetime.strptime(_cnf['started_at'], FILE_DATE_FMT)
            _s0 = max(_s0, _sta)
        else:
            _s0 = _sta
        if 'stopped_at' in _cnf:
            _s1 = datetime.datetime.strptime(_cnf['stopped_at'], FILE_DATE_FMT)
            _s1 = min(_s1, _sto)
        else:
            _s1 = _sto
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509
        return _s0, _s1
80352490   Goutte   Multi model suppo...
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    def _read_var(_nc, _keys, _key, mandatory=False):
        try:
            return _nc.variables[_keys[_key]]
        except KeyError:
            pass
        if mandatory:
            raise Exception("No variable '%s' found in NetCDF." % _keys[_key])
        return [None] * len(_nc.variables['Time'])  # slow -- use numpy!

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    # Override these using the model configuration in config.yml
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    default_nc_keys = {
        'hee': 'HEE',
        'vtot': 'V',
        'magn': 'B',
        'temp': 'T',
        'dens': 'N',
        'pdyn': 'P_dyn',
        'atse': 'Delta_angle',
    }

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    precision = "%Y-%m-%dT%H"  # model and orbits times are only equal-ish
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    orbit_data = {}  # keys are datetime as str, values arrays of XY
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    for orbit in orbits:
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        s0, s1 = _sta_sto(orbit, started_at, stopped_at)
ea6c8d5d   Goutte   Add interval cons...
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        nc_keys = default_nc_keys.copy()
        if 'parameters' in orbit:
            nc_keys.update(orbit['parameters'])

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        orbit_files = retrieve_amda_netcdf(
            target_config['slug'], orbit['slug'], s0, s1
        )
        for orbit_file in orbit_files:
            log.debug("%s: opening orbit NETCDF4 '%s'..." %
                      (target_config['name'], orbit_file))
            cdf_handle = Dataset(orbit_file, "r", format="NETCDF4")
            times = cdf_handle.variables['Time']  # YYYY DOY HH MM SS .ms
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            data_hee = _read_var(cdf_handle, nc_keys, 'hee', mandatory=True)
ea6c8d5d   Goutte   Add interval cons...
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            log.debug("%s: aggregating data from '%s'..." %
                      (target_config['name'], orbit_file))
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            for ltime, datum_hee in zip(times, data_hee):
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                try:
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                    dtime = datetime_from_list(ltime)
                except Exception:
                    log.error("Failed to parse time from %s." % ltime)
                    raise
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559
                if s0 <= dtime <= s1:
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560
                    dkey = round_time(dtime, 60*60).strftime(precision)
ea6c8d5d   Goutte   Add interval cons...
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                    orbit_data[dkey] = datum_hee
            cdf_handle.close()
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    all_data = {}  # keys are datetime as str, values tuples of data
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    for model in models:
        s0, s1 = _sta_sto(model, started_at, stopped_at)
        model_files = retrieve_amda_netcdf(
            target_config['slug'], model['slug'], s0, s1
        )
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        nc_keys = default_nc_keys.copy()
        if 'parameters' in model:
            nc_keys.update(model['parameters'])

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        if len(model_files) == 0:
            log.warn("No model data for '%s' '%s'."
                     % (target_config['slug'], model['slug']))

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        for model_file in model_files:
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            log.debug("%s: opening model NETCDF4 '%s'..." %
                      (target_config['name'], model_file))
            cdf_handle = Dataset(model_file, "r", format="NETCDF4")
596da00d   Goutte   Add more exceptio...
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            # log.debug(cdf_handle.variables.keys())
596da00d   Goutte   Add more exceptio...
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            times = cdf_handle.variables['Time']  # YYYY DOY HH MM SS .ms
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            data_v = _read_var(cdf_handle, nc_keys, 'vtot')
            data_b = _read_var(cdf_handle, nc_keys, 'magn')
            data_t = _read_var(cdf_handle, nc_keys, 'temp')
            data_n = _read_var(cdf_handle, nc_keys, 'dens')
            data_p = _read_var(cdf_handle, nc_keys, 'pdyn')
            data_a = _read_var(cdf_handle, nc_keys, 'atse')

            # Usually:
            # Time, StartTime, StopTime, V, B, N, T, Delta_angle, P_dyn
            # Earth:
            # Time, BartelsNumber, ImfID, SwID, ImfPoints,
            # SwPoints, B_M_av, B_Vec_av, B_Theta_av,
            # B_Phi_av, B, T, N, V, Vlat, Vlon,
            # Alpha, RamP, E, Beta, Ma, Kp, R, DST,
            # AE, Flux, Flag, F10_Index, StartTime, StopTime

58bfe281   Goutte   Handle start and ...
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            log.debug("%s: aggregating data from '%s'..." %
                      (target_config['name'], model_file))
d1c44c51   Goutte   Enable Earth
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            for ltime, datum_v, datum_b, datum_t, datum_n, datum_p, datum_a \
                    in zip(times, data_v, data_b, data_t, data_n, data_p, data_a):

58bfe281   Goutte   Handle start and ...
607
                try:
d1c44c51   Goutte   Enable Earth
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                    dtime = datetime_from_list(ltime)
                except Exception:
                    log.error("Failed to parse time from %s." % ltime)
                    raise
596da00d   Goutte   Add more exceptio...
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58bfe281   Goutte   Handle start and ...
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                if s0 <= dtime <= s1:
                    dkey = round_time(dtime, 60*60).strftime(precision)
d1c44c51   Goutte   Enable Earth
615

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                    x_hee = None
                    y_hee = None
                    if dkey in orbit_data:
a2034dd9   Goutte   Convert from kilo...
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                        x_hee = orbit_data[dkey][0] / ASTRONOMICAL_UNIT_IN_KM
                        y_hee = orbit_data[dkey][1] / ASTRONOMICAL_UNIT_IN_KM
596da00d   Goutte   Add more exceptio...
621
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                    # First exception: V may be a vector instead of a scalar
d1c44c51   Goutte   Enable Earth
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                    if hasattr(datum_v, '__len__'):
                        vrad = datum_v[0]
                        vtan = datum_v[1]
                        vtot = sqrt(vrad * vrad + vtan * vtan)
                    else:  # eg: Earth
                        vrad = None
                        vtan = None
                        vtot = datum_v

596da00d   Goutte   Add more exceptio...
632
                    # Second exception: Earth is always at (1, 0)
d1c44c51   Goutte   Enable Earth
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                    if target_config['slug'] == 'earth':
                        x_hee = 1
                        y_hee = 0
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                    # Third exception: B is a Vector3 or a Vector2 for Earth
                    if target_config['slug'] == 'earth':
                        if model['slug'] == 'omni_hour_all':  # Vector3
                            datum_b = datum_b[0]
                        # if model['slug'] == 'ace_swepam_real':  # Vector2
                        #     datum_b = datum_b[0]
                        if model['slug'] == 'omni_hour_all':
2c8f64ea   Goutte   Adjust Earth's dy...
644
                            datum_p = datum_n * vtot * vtot * 1.6726e-6
596da00d   Goutte   Add more exceptio...
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                        if model['slug'] == 'ace_swepam_real':
2c8f64ea   Goutte   Adjust Earth's dy...
646
                            datum_p = datum_n * vtot * vtot * 1.6726e-6
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                        if vtot is None or isnan(vtot):
                            continue

                    # Keep adding exceptions here until you can't or become mad

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                    # First model has priority: ignore data from other models
                    if dkey not in all_data:
                        # /!\ MUST be in the same order as PROPERTIES
                        all_data[dkey] = (
                            dtime.strftime("%Y-%m-%dT%H:%M:%S+00:00"),
                            vrad, vtan, vtot,
                            datum_b, datum_t, datum_p, datum_n, datum_a,
                            x_hee, y_hee
                        )
58bfe281   Goutte   Handle start and ...
661
            cdf_handle.close()
8644387c   Goutte   Use real data.
662

180d7d97   Goutte   Refactor heavily.
663
664
665
    return all_data


297a7dfc   Goutte   Add support for i...
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def generate_csv_contents(target_slug, input_slug, started_at, stopped_at):
180d7d97   Goutte   Refactor heavily.
667
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    target_config = get_target_config(target_slug)
    log.debug("Crunching CSV contents for '%s'..." % target_config['name'])
    si = StringIO.StringIO()
    cw = csv_writer(si)
    cw.writerow(PROPERTIES)

297a7dfc   Goutte   Add support for i...
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    all_data = get_data_for_target(
        target_config=target_config, input_slug=input_slug,
        started_at=started_at, stopped_at=stopped_at
    )
180d7d97   Goutte   Refactor heavily.
677
678

    log.debug("Writing and sorting CSV for '%s'..." % target_config['slug'])
8644387c   Goutte   Use real data.
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    for dkey in sorted(all_data):
        cw.writerow(all_data[dkey])
2d2af24b   Goutte   Add a basic orbit...
681

180d7d97   Goutte   Refactor heavily.
682
    log.info("Generated CSV contents for '%s'." % target_config['slug'])
2d2af24b   Goutte   Add a basic orbit...
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684
    return si.getvalue()

8644387c   Goutte   Use real data.
685

de97d643   Goutte   Fix more bugs.
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687
def generate_csv_file_if_needed(target_slug, input_slug,
                                started_at, stopped_at):
297a7dfc   Goutte   Add support for i...
688
689
690
    filename = "%s_%s_%s_%s.csv" % (target_slug, input_slug,
                                    started_at.strftime(FILE_DATE_FMT),
                                    stopped_at.strftime(FILE_DATE_FMT))
e18701b6   Goutte   Cache clear (remo...
691
    local_csv_file = join(CACHE_DIR, filename)
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693
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    generate = True
    if isfile(local_csv_file):
297a7dfc   Goutte   Add support for i...
695
        # It needs to have more than one line to not be empty (headers)
80352490   Goutte   Multi model suppo...
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704
        with open(local_csv_file) as f:
            cnt = 0
            for _ in f:
                cnt += 1
                if cnt > 1:
                    generate = False
                    break

    if generate:
c0df94bc   Goutte   Adding more logs.
705
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        log.info("Generating CSV '%s'..." % local_csv_file)
        try:
            with open(local_csv_file, mode="w+") as f:
de97d643   Goutte   Fix more bugs.
708
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710
711
                f.write(generate_csv_contents(
                    target_slug=target_slug, input_slug=input_slug,
                    started_at=started_at, stopped_at=stopped_at
                ))
c0df94bc   Goutte   Adding more logs.
712
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            log.info("Generation of '%s' done." % filename)
        except Exception as e:
d1c44c51   Goutte   Enable Earth
714
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716
            from sys import exc_info
            from traceback import extract_tb
            exc_type, exc_value, exc_traceback = exc_info()
dc0be992   Goutte   Support having no...
717
            log.error(e)
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718
719
            for trace in extract_tb(exc_traceback):
                log.error(trace)
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720
            if isfile(local_csv_file):
92abc15b   Goutte   Mistrust the API ...
721
                log.warn("Removing failed CSV '%s'..." % local_csv_file)
5ede388f   Goutte   Make sure failed ...
722
                removefile(local_csv_file)
9bfa6c42   Goutte   More bug hunting.
723
            abort(500, "Failed creating CSV '%s' : %s" % (filename, e))
c0df94bc   Goutte   Adding more logs.
724
725


e18701b6   Goutte   Cache clear (remo...
726
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def remove_all_files(in_directory):
    """
    Will throw if something horrible happens.
    Does not remove recursively (could be done with os.walk if needed).
    Does not remove directories either.
    :param in_directory: absolute path to directory
    :return:
    """
    import os

    if not os.path.isdir(in_directory):
        raise ValueError("No directory to clean at '%s'.")

    removed_files = []
    for file_name in os.listdir(in_directory):
        file_path = os.path.join(in_directory, file_name)
        if os.path.isfile(file_path):
            os.remove(file_path)
            removed_files.append(file_path)

    return removed_files


28bb4b28   Goutte   API for the cache...
749
750
def remove_files_created_before(date, in_directory):
    """
077980eb   Goutte   Improve availabil...
751
752
753
    Will throw if something horrible happens.
    Does not remove recursively (could be done with os.walk if needed).
    Does not remove directories either.
28bb4b28   Goutte   API for the cache...
754
    :param date: datetime object
077980eb   Goutte   Improve availabil...
755
    :param in_directory: absolute path to directory
28bb4b28   Goutte   API for the cache...
756
757
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759
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762
    :return:
    """
    import os
    import time

    secs = time.mktime(date.timetuple())

077980eb   Goutte   Improve availabil...
763
764
    if not os.path.isdir(in_directory):
        raise ValueError("No directory to clean at '%s'.")
28bb4b28   Goutte   API for the cache...
765
766
767
768

    removed_files = []
    for file_name in os.listdir(in_directory):
        file_path = os.path.join(in_directory, file_name)
077980eb   Goutte   Improve availabil...
769
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        if os.path.isfile(file_path):
            t = os.stat(file_path)
            if t.st_ctime < secs:
                os.remove(file_path)
                removed_files.append(file_path)
28bb4b28   Goutte   API for the cache...
774
775
776
777

    return removed_files


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def get_input_slug_from_query(inp=None):
    if inp is None:
        input_slug = request.args.get('input_slug', 'l1')
    else:
        input_slug = inp
de97d643   Goutte   Fix more bugs.
783
    if input_slug not in [i['slug'] for i in config['inputs']]:
297a7dfc   Goutte   Add support for i...
784
785
786
787
        input_slug = 'l1'  # be tolerant instead of yelling loudly
    return input_slug


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def get_interval_from_query():
    """
    Get the interval from the query, or from defaults.
    """
    before = relativedelta(months=2)
    after = relativedelta(months=1)
    today = datetime.datetime.now().replace(hour=0, minute=0, second=0)
    started_at = today - before
    stopped_at = today + after
    default_started_at = started_at.strftime(FILE_DATE_FMT)
    default_stopped_at = stopped_at.strftime(FILE_DATE_FMT)

    started_at = request.args.get('started_at', default_started_at)
    stopped_at = request.args.get('stopped_at', default_stopped_at)

    return started_at, stopped_at


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806
def get_catalog_layers(input_slug, target_slug, started_at, stopped_at):
0332f168   Goutte   Initial support f...
807
    """
284f4688   Goutte   Continue layers i...
808
809
    In the JSON file we have "columns" and "data".
    Of course, each JSON file has its own columns, with different conventions.
0332f168   Goutte   Initial support f...
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811
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814
    
    :param input_slug: 
    :param target_slug: 
    :return: 
    """
0332f168   Goutte   Initial support f...
815
    import json
2204c3f7   Goutte   Improve layers co...
816
817

    def _get_index_of_key(_data, _key):
2204c3f7   Goutte   Improve layers co...
818
819
820
821
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823
824
        try:
            index = _data['columns'].index(_key)
        except ValueError:
            log.error("Key %s not found in columns of %s" % (_key, _data))
            raise
        return index

1185f353   Goutte   Fix the CME Catal...
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    try:
        started_at = datetime.datetime.strptime(started_at, FILE_DATE_FMT)
    except:
        abort(400, "Invalid started_at parameter : '%s'." % started_at)
    try:
        stopped_at = datetime.datetime.strptime(stopped_at, FILE_DATE_FMT)
    except:
        abort(400, "Invalid stopped_at parameter : '%s'." % stopped_at)

0332f168   Goutte   Initial support f...
834
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    catalog_layers = {}
    for config_layer in config['layers']:
        if 'data' not in config_layer:
            continue
0332f168   Goutte   Initial support f...
838
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        catalog_layers[config_layer['slug']] = []
        for cl_datum in config_layer['data']:
            if input_slug not in cl_datum:
                continue
            if target_slug not in cl_datum[input_slug]:
                continue
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            if cl_datum[input_slug][target_slug] is None:
                # We used ~ in the config, there are no constraints
                constraints = []
            else:
                constraints = cl_datum[input_slug][target_slug]['constraints']
1185f353   Goutte   Fix the CME Catal...
849

0332f168   Goutte   Initial support f...
850
851
            with open(get_path("../data/catalog/%s" % cl_datum['file'])) as f:
                json_data = json.load(f)
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852
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854
                if 'start' not in cl_datum:
                    log.error("Invalid configuration: 'start' is missing.")
                    continue  # skip this
1185f353   Goutte   Fix the CME Catal...
855
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857
                if 'format' not in cl_datum:
                    log.error("Invalid configuration: 'format' is missing.")
                    continue  # skip this
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862
                start_index = _get_index_of_key(json_data, cl_datum['start'])
                if 'stop' not in cl_datum:
                    stop_index = start_index
                else:
                    stop_index = _get_index_of_key(json_data, cl_datum['stop'])
2204c3f7   Goutte   Improve layers co...
863

0332f168   Goutte   Initial support f...
864
                for json_datum in json_data['data']:
2204c3f7   Goutte   Improve layers co...
865
                    validates_any_constraint = False
b03d5eb1   Goutte   Add the last CME ...
866
867
                    if 0 == len(constraints):
                        validates_any_constraint = True
2204c3f7   Goutte   Improve layers co...
868
869
870
871
872
873
874
875
876
877
878
879
880
                    for constraint in constraints:
                        validates_constraint = True
                        for key, possible_values in constraint.iteritems():
                            actual_value = json_datum[_get_index_of_key(
                                json_data, key
                            )]
                            if actual_value not in possible_values:
                                validates_constraint = False
                                break
                        if validates_constraint:
                            validates_any_constraint = True
                            break
                    if not validates_any_constraint:
0332f168   Goutte   Initial support f...
881
                        continue
284f4688   Goutte   Continue layers i...
882
883
                    start_time = json_datum[start_index]
                    stop_time = json_datum[stop_index]
1185f353   Goutte   Fix the CME Catal...
884
885
886
887
888
889
890
891
892
893
894

                    start_time = datetime.datetime.strptime(
                        start_time, cl_datum['format']
                    )
                    stop_time = datetime.datetime.strptime(
                        stop_time, cl_datum['format']
                    )

                    if start_time < started_at:
                        continue

0332f168   Goutte   Initial support f...
895
                    catalog_layers[config_layer['slug']].append({
1185f353   Goutte   Fix the CME Catal...
896
897
                        'start': start_time.strftime(MOMENT_DATE_FMT),
                        'stop':  stop_time.strftime(MOMENT_DATE_FMT),
0332f168   Goutte   Initial support f...
898
                    })
0332f168   Goutte   Initial support f...
899
900
901
902

    return catalog_layers


077980eb   Goutte   Improve availabil...
903
904
905
906
907
908
909
910
911
912
913
def get_hit_counter():
    hit_count_path = get_path("../VISITS")

    if isfile(hit_count_path):
        hit_count = int(open(hit_count_path).read())
    else:
        hit_count = 1

    return hit_count


a4a9ef03   Goutte   Cache generated C...
914
915
916
917
918
919
920
921
922
923
924
925
926
927
928
929
def increment_hit_counter():
    hit_count_path = get_path("../VISITS")

    if isfile(hit_count_path):
        hit_count = int(open(hit_count_path).read())
        hit_count += 1
    else:
        hit_count = 1

    hit_counter_file = open(hit_count_path, 'w')
    hit_counter_file.write(str(hit_count))
    hit_counter_file.close()

    return hit_count


4aaf6874   Goutte   Try fixing the ge...
930
931
932
933
def update_spacepy():
    """
    Importing pydcf will fail if the toolbox is not up to date.
    """
4aaf6874   Goutte   Try fixing the ge...
934
935
936
937
938
939
940
941
942
    try:
        log.info("Updating spacepy's toolbox…")
        import spacepy.toolbox

        spacepy.toolbox.update()
    except Exception as e:
        log.error("Failed to update spacepy : %s." % e)


077980eb   Goutte   Improve availabil...
943
944
945
tpl_global_vars['visits'] = get_hit_counter()


a4a9ef03   Goutte   Cache generated C...
946
947
948
# ROUTING #####################################################################

@app.route('/favicon.ico')
bde97e4d   Goutte   Add more changes ...
949
def favicon():  # we want it served from the root, not from static/
a4a9ef03   Goutte   Cache generated C...
950
951
952
953
954
955
956
957
958
959
    return send_from_directory(
        join(app.root_path, 'static', 'img'),
        'favicon.ico', mimetype='image/vnd.microsoft.icon'
    )


@app.route("/")
@app.route("/home.html")
@app.route("/index.html")
def home():
077980eb   Goutte   Improve availabil...
960
    increment_hit_counter()
bde97e4d   Goutte   Add more changes ...
961
962
    parameters = PARAMETERS.values()
    parameters.sort(key=lambda x: x['position'])
297a7dfc   Goutte   Add support for i...
963
    input_slug = get_input_slug_from_query()
0332f168   Goutte   Initial support f...
964
    targets = [t for t in config['targets'] if not t['locked']]
284f4688   Goutte   Continue layers i...
965
    started_at, stopped_at = get_interval_from_query()
0332f168   Goutte   Initial support f...
966
967
    for i, target in enumerate(targets):
        targets[i]['catalog_layers'] = get_catalog_layers(
1185f353   Goutte   Fix the CME Catal...
968
            input_slug, target['slug'], started_at, stopped_at
0332f168   Goutte   Initial support f...
969
        )
a4a9ef03   Goutte   Cache generated C...
970
    return render_view('home.html.jinja2', {
0332f168   Goutte   Initial support f...
971
972
        # 'targets': config['targets'],
        'targets': targets,
bde97e4d   Goutte   Add more changes ...
973
        'parameters': parameters,
297a7dfc   Goutte   Add support for i...
974
        'input_slug': input_slug,
284f4688   Goutte   Continue layers i...
975
976
        'started_at': started_at,
        'stopped_at': stopped_at,
a4a9ef03   Goutte   Cache generated C...
977
978
979
        'planets': [s for s in config['targets'] if s['type'] == 'planet'],
        'probes':  [s for s in config['targets'] if s['type'] == 'probe'],
        'comets':  [s for s in config['targets'] if s['type'] == 'comet'],
077980eb   Goutte   Improve availabil...
980
        'visits':  get_hit_counter(),
a4a9ef03   Goutte   Cache generated C...
981
982
983
    })


297a7dfc   Goutte   Add support for i...
984
985
@app.route("/<target>_<inp>_<started_at>_<stopped_at>.csv")
def download_target_csv(target, inp, started_at, stopped_at):
a4a9ef03   Goutte   Cache generated C...
986
987
988
989
    """
    Grab data and orbit data for the specified `target`,
    rearrange it and return it as a CSV file.
    `started_at` and `stopped_at` should be UTC.
297a7dfc   Goutte   Add support for i...
990
    `inp` is the input slug, l1 or sa or sb.
a4a9ef03   Goutte   Cache generated C...
991
    """
180d7d97   Goutte   Refactor heavily.
992
    check_target_config(target)
a4a9ef03   Goutte   Cache generated C...
993
    try:
c0df94bc   Goutte   Adding more logs.
994
        started_at = datetime.datetime.strptime(started_at, FILE_DATE_FMT)
a4a9ef03   Goutte   Cache generated C...
995
996
997
    except:
        abort(400, "Invalid started_at parameter : '%s'." % started_at)
    try:
c0df94bc   Goutte   Adding more logs.
998
        stopped_at = datetime.datetime.strptime(stopped_at, FILE_DATE_FMT)
a4a9ef03   Goutte   Cache generated C...
999
1000
    except:
        abort(400, "Invalid stopped_at parameter : '%s'." % stopped_at)
297a7dfc   Goutte   Add support for i...
1001
    input_slug = get_input_slug_from_query(inp=inp)
a4a9ef03   Goutte   Cache generated C...
1002

297a7dfc   Goutte   Add support for i...
1003
1004
1005
    filename = "%s_%s_%s_%s.csv" % (target, input_slug,
                                    started_at.strftime(FILE_DATE_FMT),
                                    stopped_at.strftime(FILE_DATE_FMT))
e18701b6   Goutte   Cache clear (remo...
1006
    local_csv_file = join(CACHE_DIR, filename)
297a7dfc   Goutte   Add support for i...
1007
1008
1009
1010
    generate_csv_file_if_needed(
        target_slug=target, input_slug=input_slug,
        started_at=started_at, stopped_at=stopped_at
    )
a4a9ef03   Goutte   Cache generated C...
1011
1012
1013
    if not isfile(local_csv_file):
        abort(500, "Could not cache CSV file at '%s'." % local_csv_file)

e18701b6   Goutte   Cache clear (remo...
1014
    return send_from_directory(CACHE_DIR, filename)
a4a9ef03   Goutte   Cache generated C...
1015
1016


297a7dfc   Goutte   Add support for i...
1017
1018
@app.route("/<targets>_<inp>_<started_at>_<stopped_at>.tar.gz")
def download_targets_tarball(targets, inp, started_at, stopped_at):
b2837a08   Goutte   Add three retries...
1019
    """
bc18b96c   Goutte   Implement first (...
1020
1021
1022
    Grab data and orbit data for each of the specified `targets`,
    in their own CSV file, and make a tarball of them.
    `started_at` and `stopped_at` should be UTC strings.
b2837a08   Goutte   Add three retries...
1023

ea6c8d5d   Goutte   Add interval cons...
1024
1025
    Note: we do not use this route anymore, but let's keep it shelved for now.

2fedd73b   Goutte   Initial implement...
1026
    targets: string list of targets' slugs, separated by `-`.
b2837a08   Goutte   Add three retries...
1027
    """
2fedd73b   Goutte   Initial implement...
1028
    separator = '-'
0511eed7   Goutte   Tarball generatio...
1029
1030
    targets = targets.split(separator)
    targets.sort()
2fedd73b   Goutte   Initial implement...
1031
1032
    targets_configs = []
    for target in targets:
b2837a08   Goutte   Add three retries...
1033
1034
        if not target:
            abort(400, "Invalid targets format : `%s`." % targets)
180d7d97   Goutte   Refactor heavily.
1035
        targets_configs.append(get_target_config(target))
2fedd73b   Goutte   Initial implement...
1036
    if 0 == len(targets_configs):
b2837a08   Goutte   Add three retries...
1037
1038
        abort(400, "No valid targets specified. What are you doing?")

b2837a08   Goutte   Add three retries...
1039
    try:
ea6c8d5d   Goutte   Add interval cons...
1040
        started_at = datetime.datetime.strptime(started_at, FILE_DATE_FMT)
b2837a08   Goutte   Add three retries...
1041
1042
1043
    except:
        abort(400, "Invalid started_at parameter : '%s'." % started_at)
    try:
ea6c8d5d   Goutte   Add interval cons...
1044
        stopped_at = datetime.datetime.strptime(stopped_at, FILE_DATE_FMT)
b2837a08   Goutte   Add three retries...
1045
1046
    except:
        abort(400, "Invalid stopped_at parameter : '%s'." % stopped_at)
ea6c8d5d   Goutte   Add interval cons...
1047
1048
    sta = started_at.strftime(FILE_DATE_FMT)
    sto = stopped_at.strftime(FILE_DATE_FMT)
b2837a08   Goutte   Add three retries...
1049

297a7dfc   Goutte   Add support for i...
1050
1051
1052
1053
1054
    input_slug = get_input_slug_from_query(inp=inp)

    gzip_filename = "%s_%s_%s_%s.tar.gz" % (
        separator.join(targets), input_slug, sta, sto
    )
e18701b6   Goutte   Cache clear (remo...
1055
    local_gzip_file = join(CACHE_DIR, gzip_filename)
2fedd73b   Goutte   Initial implement...
1056
1057

    if not isfile(local_gzip_file):
0511eed7   Goutte   Tarball generatio...
1058
        log.debug("Creating the CSV files for the tarball...")
2fedd73b   Goutte   Initial implement...
1059
        for target_config in targets_configs:
297a7dfc   Goutte   Add support for i...
1060
1061
1062
            filename = "%s_%s_%s_%s.csv" % (
                target_config['slug'], input_slug, sta, sto
            )
e18701b6   Goutte   Cache clear (remo...
1063
            local_csv_file = join(CACHE_DIR, filename)
2fedd73b   Goutte   Initial implement...
1064
1065
            if not isfile(local_csv_file):
                with open(local_csv_file, mode="w+") as f:
297a7dfc   Goutte   Add support for i...
1066
1067
1068
1069
1070
1071
                    f.write(generate_csv_contents(
                        target_slug=target_config['slug'],
                        started_at=started_at,
                        stopped_at=stopped_at,
                        input_slug=input_slug
                    ))
2fedd73b   Goutte   Initial implement...
1072

0511eed7   Goutte   Tarball generatio...
1073
        log.debug("Creating the tarball '%s'..." % local_gzip_file)
2fedd73b   Goutte   Initial implement...
1074
1075
        with tarfile.open(local_gzip_file, "w:gz") as tar:
            for target_config in targets_configs:
297a7dfc   Goutte   Add support for i...
1076
1077
1078
                filename = "%s_%s_%s_%s.csv" % (
                    target_config['slug'], input_slug, sta, sto
                )
e18701b6   Goutte   Cache clear (remo...
1079
                local_csv_file = join(CACHE_DIR, filename)
2fedd73b   Goutte   Initial implement...
1080
1081
1082
                tar.add(local_csv_file, arcname=filename)

    if not isfile(local_gzip_file):
0511eed7   Goutte   Tarball generatio...
1083
        abort(500, "No tarball to serve. Looked at '%s'." % local_gzip_file)
2fedd73b   Goutte   Initial implement...
1084

e18701b6   Goutte   Cache clear (remo...
1085
    return send_from_directory(CACHE_DIR, gzip_filename)
b2837a08   Goutte   Add three retries...
1086

28bb4b28   Goutte   API for the cache...
1087

297a7dfc   Goutte   Add support for i...
1088
1089
@app.route("/<targets>_<inp>_<params>_<started_at>_<stopped_at>.nc")
def download_targets_netcdf(targets, inp, params, started_at, stopped_at):
bc18b96c   Goutte   Implement first (...
1090
    """
4aaf6874   Goutte   Try fixing the ge...
1091
1092
    NOTE : This is not used anymore.
    
bc18b96c   Goutte   Implement first (...
1093
    Grab data and orbit data for the specified `target`,
aa7247d6   Goutte   Generate a CDF fi...
1094
    rearrange it and return it as a NetCDF file.
e18701b6   Goutte   Cache clear (remo...
1095
    `started_at` and `stopped_at` are expected to be UTC.
bc18b96c   Goutte   Implement first (...
1096
1097
1098
1099

    targets: string list of targets' slugs, separated by `-`.
    params: string list of targets' parameters, separated by `-`.
    """
e18701b6   Goutte   Cache clear (remo...
1100
    separator = '-'  # /!\ this char should never be in target's slugs
bc18b96c   Goutte   Implement first (...
1101
1102
1103
1104
1105
1106
1107
1108
1109
    targets = targets.split(separator)
    targets.sort()
    targets_configs = []
    for target in targets:
        if not target:
            abort(400, "Invalid targets format : `%s`." % targets)
        targets_configs.append(get_target_config(target))
    if 0 == len(targets_configs):
        abort(400, "No valid targets specified. What are you doing?")
4aaf6874   Goutte   Try fixing the ge...
1110

bc18b96c   Goutte   Implement first (...
1111
1112
1113
1114
1115
1116
1117
    params = params.split(separator)
    params.sort()
    if 0 == len(params):
        abort(400, "No valid parameters specified. What are you doing?")
    if not is_list_in_list(params, PARAMETERS.keys()):
        abort(400, "Some parameters are not recognized in '%s'." % str(params))

57493104   Goutte   Add the time to t...
1118
    date_fmt = FILE_DATE_FMT
bc18b96c   Goutte   Implement first (...
1119
1120
1121
1122
1123
1124
1125
1126
1127
1128
1129
    try:
        started_at = datetime.datetime.strptime(started_at, date_fmt)
    except:
        abort(400, "Invalid started_at parameter : '%s'." % started_at)
    try:
        stopped_at = datetime.datetime.strptime(stopped_at, date_fmt)
    except:
        abort(400, "Invalid stopped_at parameter : '%s'." % stopped_at)
    sta = started_at.strftime(date_fmt)
    sto = stopped_at.strftime(date_fmt)

297a7dfc   Goutte   Add support for i...
1130
1131
1132
1133
1134
    input_slug = get_input_slug_from_query(inp=inp)

    nc_filename = "%s_%s_%s_%s_%s.nc" % (
        separator.join(targets), separator.join(params), input_slug, sta, sto
    )
e18701b6   Goutte   Cache clear (remo...
1135
    nc_path = join(CACHE_DIR, nc_filename)
bc18b96c   Goutte   Implement first (...
1136
1137
1138
1139
1140

    if not isfile(nc_path):
        log.debug("Creating the NetCDF file '%s'..." % nc_filename)
        nc_handle = Dataset(nc_path, "w", format="NETCDF4")
        try:
ea6c8d5d   Goutte   Add interval cons...
1141
            nc_handle.description = "Model and orbit data for targets"  # todo
bc18b96c   Goutte   Implement first (...
1142
            nc_handle.history = "Created " + time.ctime(time.time())
ea6c8d5d   Goutte   Add interval cons...
1143
            nc_handle.source = "Heliopropa (CDDP)"
bc18b96c   Goutte   Implement first (...
1144
1145
1146
1147
1148
            available_params = list(PROPERTIES)
            for target in targets_configs:
                target_slug = target['slug']
                log.debug("Adding group '%s' to the NetCDF..." % target_slug)
                nc_group = nc_handle.createGroup(target_slug)
297a7dfc   Goutte   Add support for i...
1149
1150
1151
1152
                data = get_data_for_target(
                    target_config=target, input_slug=input_slug,
                    started_at=started_at, stopped_at=stopped_at
                )
bc18b96c   Goutte   Implement first (...
1153
                dkeys = sorted(data)
ceeb2f4a   Goutte   Add the target co...
1154
1155
                dimension = 'dim_'+target_slug
                nc_handle.createDimension(dimension, len(dkeys))
57493104   Goutte   Add the time to t...
1156
1157

                # TIME #
ceeb2f4a   Goutte   Add the target co...
1158
                nc_time = nc_group.createVariable('time', 'i8', (dimension,))
57493104   Goutte   Add the time to t...
1159
1160
1161
1162
1163
1164
1165
1166
1167
1168
1169
1170
                nc_time.units = "hours since 1970-01-01 00:00:00"
                nc_time.calendar = "standard"
                times = []
                for dkey in dkeys:
                    time_as_string = data[dkey][0][:-6]  # remove +00:00 tail
                    date = datetime.datetime.strptime(time_as_string, date_fmt)
                    times.append(date2num(
                        date, units=nc_time.units, calendar=nc_time.calendar
                    ))
                nc_time[:] = times

                # SELECTED PARAMETERS #
bc18b96c   Goutte   Implement first (...
1171
1172
1173
1174
                nc_vars = []
                indices = []
                for param in params:
                    indices.append(available_params.index(param))
ceeb2f4a   Goutte   Add the target co...
1175
                    nc_var = nc_group.createVariable(param, 'f8', (dimension,))
5a6d4498   Goutte   Add a title to ea...
1176
                    nc_var.units = PARAMETERS[param]['units']
bc18b96c   Goutte   Implement first (...
1177
1178
1179
1180
1181
1182
1183
1184
                    nc_vars.append(nc_var)
                for i, nc_var in enumerate(nc_vars):
                    index = indices[i]
                    values = []
                    for dkey in dkeys:
                        dval = data[dkey]
                        values.append(dval[index])
                    nc_var[:] = values
ceeb2f4a   Goutte   Add the target co...
1185
1186

                # ORBIT #
6491a1f1   Goutte   Fix up the bugs l...
1187
                nc_x = nc_group.createVariable('xhee', 'f8', (dimension,))
ceeb2f4a   Goutte   Add the target co...
1188
                nc_x.units = 'Au'
6491a1f1   Goutte   Fix up the bugs l...
1189
                nc_y = nc_group.createVariable('yhee', 'f8', (dimension,))
ceeb2f4a   Goutte   Add the target co...
1190
1191
1192
                nc_y.units = 'Au'
                values_x = []
                values_y = []
6491a1f1   Goutte   Fix up the bugs l...
1193
1194
                index_x = available_params.index('xhee')
                index_y = available_params.index('yhee')
ceeb2f4a   Goutte   Add the target co...
1195
1196
1197
1198
1199
1200
1201
1202
                for dkey in dkeys:
                    dval = data[dkey]
                    values_x.append(dval[index_x])
                    values_y.append(dval[index_y])
                nc_x[:] = values_x
                nc_y[:] = values_y
            log.debug("Writing NetCDF '%s'..." % nc_filename)

d1c44c51   Goutte   Enable Earth
1203
        except Exception:
57493104   Goutte   Add the time to t...
1204
            log.error("Failed to generate NetCDF '%s'." % nc_filename)
d1c44c51   Goutte   Enable Earth
1205
            raise
bc18b96c   Goutte   Implement first (...
1206
1207
1208
1209
1210
1211
        finally:
            nc_handle.close()

    if not isfile(nc_path):
        abort(500, "No NetCDF to serve. Looked at '%s'." % nc_path)

e18701b6   Goutte   Cache clear (remo...
1212
    return send_from_directory(CACHE_DIR, nc_filename)
bc18b96c   Goutte   Implement first (...
1213
1214


297a7dfc   Goutte   Add support for i...
1215
1216
@app.route("/<targets>_<inp>_<started_at>_<stopped_at>.cdf")
def download_targets_cdf(targets, inp, started_at, stopped_at):
aa7247d6   Goutte   Generate a CDF fi...
1217
1218
1219
1220
1221
1222
1223
1224
1225
1226
1227
1228
1229
1230
1231
1232
1233
1234
1235
1236
    """
    Grab data and orbit data for the specified `target`,
    rearrange it and return it as a CDF file.
    `started_at` and `stopped_at` are expected to be UTC.

    targets: string list of targets' slugs, separated by `-`.
    params: string list of targets' parameters, separated by `-`.
    """
    separator = '-'  # /!\ this char should never be in target's slugs
    targets = targets.split(separator)
    targets.sort()
    targets_configs = []
    for target in targets:
        if not target:
            abort(400, "Invalid targets format : `%s`." % targets)
        targets_configs.append(get_target_config(target))
    if 0 == len(targets_configs):
        abort(400, "No valid targets specified. What are you doing?")

    params = PARAMETERS.keys()
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    try:
        started_at = datetime.datetime.strptime(started_at, FILE_DATE_FMT)
    except:
        abort(400, "Invalid started_at parameter : '%s'." % started_at)
    try:
        stopped_at = datetime.datetime.strptime(stopped_at, FILE_DATE_FMT)
    except:
        abort(400, "Invalid stopped_at parameter : '%s'." % stopped_at)
    sta = started_at.strftime(FILE_DATE_FMT)
    sto = stopped_at.strftime(FILE_DATE_FMT)

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    input_slug = get_input_slug_from_query(inp=inp)

    cdf_filename = "%s_%s_%s_%s.cdf" % (
        separator.join(targets), input_slug, sta, sto
    )
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    cdf_path = join(CACHE_DIR, cdf_filename)

    if not isfile(cdf_path):
        log.debug("Creating the CDF file '%s'..." % cdf_filename)
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        try:
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            from spacepy import pycdf
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        except ImportError:
            # If spacepy's toolbox is not up-to-date, importing will fail.
            # So, let's update and try again !
            update_spacepy()
            try:
                from spacepy import pycdf
            except ImportError as e:
                log.error("Failed to import pycdf from spacepy : %s" % e)
                raise
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        except Exception as e:
            log.error("Failed to import pycdf from spacepy : %s" % e)
            raise
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        try:
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            cdf_handle = pycdf.CDF(cdf_path, masterpath='')
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            description = "Model and orbit data for %s." % \
                ', '.join([t['name'] for t in targets_configs])
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            cdf_handle.attrs['Description'] = description
            cdf_handle.attrs['Author'] = "Heliopropa.irap.omp.eu (CDPP)"
            cdf_handle.attrs['Created'] = str(time.ctime(time.time()))
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            available_params = list(PROPERTIES)
            for target in targets_configs:
                target_slug = target['slug']
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                data = get_data_for_target(
                    target_config=target, input_slug=input_slug,
                    started_at=started_at, stopped_at=stopped_at
                )
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                dkeys = sorted(data)

                values = []
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                for dkey in dkeys:
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                    time_str = data[dkey][0][:-6]  # remove +00:00 tail
                    date = datetime.datetime.strptime(time_str, FILE_DATE_FMT)
                    values.append(date)
                kt = "%s_time" % target_slug
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                cdf_handle.new(kt, type=pycdf.const.CDF_EPOCH)
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                cdf_handle[kt] = values
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                # cdf_handle[kt].attrs['FIELDNAM'] = "Time since 0 A.D"
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                for param in params:
                    k = "%s_%s" % (target_slug, param)
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                    # print("PARAM %s" % k)
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                    values = []
                    i = available_params.index(param)
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                    has_nones = False
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                    for dkey in dkeys:
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                        value = data[dkey][i]
                        if value is None:
                            has_nones = True
                        values.append(value)
                    if has_nones:
                        # PyCDF hates it when there are Nones.
                        # Since we don't know what value to set instead,
                        # let's skip the param altogether.
                        continue
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                    cdf_handle[k] = values
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                    attrs = cdf_handle[k].attrs
                    attrs['UNITS'] = PARAMETERS[param]['units']
                    attrs['LABLAXIS'] = PARAMETERS[param]['name']
                    attrs['FIELDNAM'] = PARAMETERS[param]['title']
                    if values:
                        attrs['VALIDMIN'] = min(values)
                        attrs['VALIDMAX'] = max(values)

                kx = "%s_xhee" % target_slug
                ky = "%s_yhee" % target_slug
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                values_xhee = []
                values_yhee = []
                index_x = available_params.index('xhee')
                index_y = available_params.index('yhee')
                for dkey in dkeys:
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                    value_xhee = data[dkey][index_x]
                    value_yhee = data[dkey][index_y]
                    # We've got some `None`s cropping up in the data sometimes.
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                    # PyCDF does not digest Nones at all.
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                    # While they solve this upstream, let's make an ugly fix!
                    if (value_xhee is not None) and (value_yhee is not None):
                        values_xhee.append(value_xhee)
                        values_yhee.append(value_yhee)
                    else:
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                        values_xhee.append(0)
                        values_yhee.append(0)
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                        log.warn("Orbit data for %s has NaNs." % target_slug)
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                cdf_handle[kx] = values_xhee
                cdf_handle[ky] = values_yhee
                cdf_handle[kx].attrs['UNITS'] = 'Au'
                cdf_handle[ky].attrs['UNITS'] = 'Au'
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            log.debug("Writing CDF '%s'..." % cdf_filename)
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            cdf_handle.close()
            log.debug("Wrote CDF '%s'." % cdf_filename)
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        except Exception as e:
            log.error("Failed to generate CDF '%s'." % cdf_filename)
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            if isfile(cdf_path):
                removefile(cdf_path)
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            raise

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    if not isfile(cdf_path):
        abort(500, "No CDF to serve. Looked at '%s'." % cdf_path)

    return send_from_directory(CACHE_DIR, cdf_filename)


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# API #########################################################################

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@app.route("/cache/clear")
def cache_clear():
    """
    Removes all files from the cache.
    Note: It also removes the .gitkeep file. Not a problem for prod.
    """
    removed_files = remove_all_files(CACHE_DIR)
    count = len(removed_files)
    return "Cache cleared! Removed %d file%s." \
           % (count, 's' if count != 1 else '')


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@app.route("/cache/cleanup")
def cache_cleanup():
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    """
    Removes all files from the cache that are older than roughly one month.
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    Note: It also removes the .gitkeep file. Maybe it should not, but hey.
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    """
    a_month_ago = datetime.datetime.now() - datetime.timedelta(days=32)
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    removed_files = remove_files_created_before(a_month_ago, CACHE_DIR)
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    count = len(removed_files)
    return "Cache cleaned! Removed %d old file%s." \
           % (count, 's' if count != 1 else '')
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@app.route("/cache/warmup")
def cache_warmup():
    """
    Warms up the cache for the current day.
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1396
    """
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1397
    warmup_started_at = datetime.datetime.now()
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    sta, sto = get_interval_from_query()
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1399
    inp = 'l1'  # default input, maybe warm them all up ?
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    targets = get_active_targets()
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1402
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    targets_slugs = [target['slug'] for target in targets]
    targets_slugs.sort()
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1404
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    update_spacepy()
    for target in targets:
        download_target_csv(target['slug'], inp, sta, sto)
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1408
    download_targets_cdf('-'.join(targets_slugs), inp, sta, sto)
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1409

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    warmup_ended_at = datetime.datetime.now()
    warmup_timedelta = warmup_ended_at - warmup_started_at

    return "Done in %s." % str(warmup_timedelta)
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1416
@app.route("/log")
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1417
@app.route("/log.html")
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def log_show():
    with open(LOG_FILE, 'r') as f:
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1420
        contents = f.read()
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1421
    return "<pre>" + contents + "</pre>"
bde97e4d   Goutte   Add more changes ...
1422
1423


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@app.route("/log/clear")
def log_clear():
    with open(LOG_FILE, 'w') as f:
        f.truncate()
    return "Log cleared successfully."


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# DEV TOOLS ###################################################################

# @app.route("/inspect")
# def analyze_cdf():
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1435
#     """
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1436
#     For debug purposes.
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1437
#     """
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#     cdf_to_inspect = get_path("../res/dummy.nc")
#     cdf_to_inspect = get_path("../res/dummy_jupiter_coordinates.nc")
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#
#     si = StringIO.StringIO()
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#     cw = csv.DictWriter(si, fieldnames=['Name', 'Shape', 'Length'])
#     cw.writeheader()
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1444
#
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#     # Time, StartTime, StopTime, V, B, N, T, Delta_angle, P_dyn, QualityFlag
#     cdf_handle = Dataset(cdf_to_inspect, "r", format="NETCDF4")
#     for variable in cdf_handle.variables:
#         v = cdf_handle.variables[variable]
#         cw.writerow({
#             'Name': variable,
#             'Shape': v.shape,
#             'Length': v.size,
#         })
#     cdf_handle.close()
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#
#     return si.getvalue()


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# MAIN ########################################################################

if __name__ == "__main__":
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1462
    # Debug mode is on, as the production server does not use this but run.wsgi
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1463
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    extra_files = [get_path('../config.yml')]
    app.run(debug=True, extra_files=extra_files)