Blame view

src/ExternLib/Spectrum/Spectrum.hh 20.2 KB
b58d725b   Hacene SI HADJ MOHAND   adding plungin auto
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
/*
 * To change this license header, choose License Headers in Project Properties.
 * To change this template file, choose Tools | Templates
 * and open the template in the editor.
 */

/* 
 * File:   Spectrum.hh
 * Author: hacene
 *
 * Created on December 31, 2020, 10:14 AM
 */

#ifndef SPECTRUM_HH
#define SPECTRUM_HH

#include "Parameter.hh"
#include "ParamData.hh"
b58d725b   Hacene SI HADJ MOHAND   adding plungin auto
19
20
#include "DataTypeMath.hh"
#include "Operation.hh"
d466ae92   Hacene SI HADJ MOHAND   progress
21
22
#include "AMDA_exception.hh"

b58d725b   Hacene SI HADJ MOHAND   adding plungin auto
23
24
25
26
27
28

#include <iterator>
namespace AMDA {
    namespace Parameters {
        namespace Spectrum {

56581db8   Hacene SI HADJ MOHAND   sampling
29
30
#define AVERAGE_TIME 1200 // (seconds)
#define MAX_GAP_SIZE 3600 // (seconds)
d466ae92   Hacene SI HADJ MOHAND   progress
31
32
33
34
35
36
37
38
39
40
41
42
43

            using namespace std;

            typedef enum {
                CENTER,
                FORWARD,
                BACKWARD,
            } samplingEnum;

            static std::map<std::string, samplingEnum> strToSamplingEnum{

                {"center", samplingEnum::CENTER},
                {"forward", samplingEnum::FORWARD},
66bd97e1   Hacene SI HADJ MOHAND   ok for test
44
45
46
47
48
                {"backward", samplingEnum::BACKWARD},
                {"0", samplingEnum::CENTER},
                {"1", samplingEnum::FORWARD},
                {"0", samplingEnum::BACKWARD}
            };
d466ae92   Hacene SI HADJ MOHAND   progress
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92

            template<typename DataType, typename OutputType>
            class SpectrumBase : public Operation {
            public:

                /**
                 * @brief Constructor.
                 * @details Create the ParamData type of the input ParamData.
                 */
                SpectrumBase(Process& pProcess, TimeIntervalListSPtr pTimeIntervalList, ParamDataSpec<DataType >&paramInput, double windowtime, std::string sampling = "center") :
                Operation(pProcess),
                _timeIntervalList(pTimeIntervalList),
                _currentTimeInterval(pTimeIntervalList->begin()),
                _paramInput(paramInput),
                _paramOutput(new ParamDataSpec<std::vector<OutputType>>()),
                _windowtime(windowtime),
                _sampling(sampling),
                _needInit(true) {
                    _paramDataOutput = _paramOutput;
                };

                virtual ~SpectrumBase() {
                }

                double getWindowTime() {
                    return _windowtime;
                }

                bool inWindow(double time) {
                    return (time >= _minWindow && time <= _maxWindow);
                }

                double getIntStartTime() {
                    return _currentTimeInterval->_startTime;
                }

                double getIntStopTime() {
                    return _currentTimeInterval->_stopTime;
                }

                bool inInt(double time) {
                    return (time >= _currentTimeInterval->_startTime && time <= _currentTimeInterval->_stopTime);
                }

8fbdad94   Hacene SI HADJ MOHAND   computation cent...
93
94
95
96
97
98
99
100
101
102
                int inMem(std::list<std::pair<double, DataType> >& mem, double time_) {
                    int i = 0;
                    for (auto elt : mem) {
                        if (elt.first == time_)
                            return i;
                        i++;
                    }
                    return -1;
                }

d466ae92   Hacene SI HADJ MOHAND   progress
103
104
105
106
                double getTarget() {
                    return _target;
                }

8fbdad94   Hacene SI HADJ MOHAND   computation cent...
107
108
109
110
111
112
113
114
115
116
                DataType getData(double time_) {
                    DataType res;
                    res << NotANumber();
                    for (auto data : _mem) {
                        if (data.first == time_)
                            res = data.second;
                    }
                    return res;
                }

d466ae92   Hacene SI HADJ MOHAND   progress
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
                bool needInit() {
                    return _needInit;
                }

                void setNeedInit(bool needInit) {
                    _needInit = needInit;
                }

                bool setTarget(double time) {

                    if (!inInt(time)) {
                        return false;
                    }

                    _target = time;

                    switch (strToSamplingEnum[_sampling]) {
                        case samplingEnum::FORWARD:
                            _minWindow = _target;
                            if (_minWindow < _currentTimeInterval->_startTime) {
                                _minWindow = _currentTimeInterval->_startTime;
                            }
                            _maxWindow = _target + _windowtime;
                            if (_maxWindow > _currentTimeInterval->_stopTime) {
                                _maxWindow = _currentTimeInterval->_stopTime;
                            }
                        case samplingEnum::BACKWARD:
                            _minWindow = _target - _windowtime;
                            if (_minWindow < _currentTimeInterval->_startTime) {
                                _minWindow = _currentTimeInterval->_startTime;
                            }
                            _maxWindow = _target;
                            if (_maxWindow > _currentTimeInterval->_stopTime) {
                                _maxWindow = _currentTimeInterval->_stopTime;
                            }
                            break;
                        default:
                            _minWindow = _target - _windowtime / 2.;
                            if (_minWindow < _currentTimeInterval->_startTime) {
                                _minWindow = _currentTimeInterval->_startTime;
                            }
                            _maxWindow = _target + _windowtime / 2.;
                            if (_maxWindow > _currentTimeInterval->_stopTime) {
                                _maxWindow = _currentTimeInterval->_stopTime;
                            }
                            break;
                    }
                    return true;
                }

                /**
                 * @overload Operation::reset(double pStartTime, double pTimeInt)
                 * @brief reset static data to process another TimeInterval
                 */
                virtual void reset() {
                    Operation::reset();
                    if (_currentTimeInterval == _timeIntervalList->end()) {
                        return;
                    }
                    ++_currentTimeInterval;
                    _needInit = true;
                    resetFunc();
                }

                virtual void init() {
                    setTarget(getIntStartTime());
                    setNeedInit(false);
                }

                virtual bool nextTarget() {
                    double target = getTarget() + getWindowTime();
                    bool res = setTarget(target);
                    while (!_mem.empty() && !inWindow(_mem.front().first)) {
                        _mem.pop_front();
                    }
                    return res;
                }

                virtual bool needToChangeTarget(double crtTime) {
                    return !needInit() && !inWindow(crtTime);
                }

                virtual double getSampling() {
                    return getWindowTime();
                }

                virtual void pushData(double time, DataType& elem) {
8fbdad94   Hacene SI HADJ MOHAND   computation cent...
204
205
206
207
208
209
                    int pos = SpectrumBase<DataType, OutputType>::inMem(_mem, time);
                    if (pos != -1) {
                        auto it = _mem.begin();
                        std::advance(it, pos);
                        _mem.erase(it);
                    }
d466ae92   Hacene SI HADJ MOHAND   progress
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
                    _mem.push_back(std::make_pair(time, elem));
                }

                virtual void resetFunc() {
                    _mem.clear();
                }

                double getInputParamSampling() {
                    return _paramInput.getMinSampling();
                }

                virtual std::vector<OutputType> compute() = 0;

                /**
                 * @overload Operation::write(ParamDataIndexInfo &pParamDataIndexInfo)
                 */
                void write(ParamDataIndexInfo &pParamDataIndexInfo) {
                    if ((pParamDataIndexInfo._nbDataToProcess > 0)) {
                        for (unsigned int _index = pParamDataIndexInfo._startIndex;
                                _index < pParamDataIndexInfo._startIndex + pParamDataIndexInfo._nbDataToProcess;
                                ++_index) {
                            double crtTime = _paramInput.getTime(_index);
                            DataType crtVal = _paramInput.get(_index);
                            if (needToChangeTarget(crtTime)) {
                                _paramOutput->pushTime(getTarget());
                                _paramOutput->push(compute());
                                pushData(crtTime, crtVal);
                                nextTarget();
                                bool skip = false;
                                while (!skip && needToChangeTarget(crtTime)) {
                                    _paramOutput->pushTime(getTarget());
                                    _paramOutput->push(compute());
                                    skip = nextTarget();
                                }
                            } else {
                                pushData(crtTime, crtVal);
                                if (needInit()) {
                                    init();
                                }
                            }
                        }
                    }
                    if (pParamDataIndexInfo._timeIntToProcessChanged || pParamDataIndexInfo._noMoreTimeInt) {
                        if (!needInit()) {
                            do {
                                if (inInt(getTarget())) {
                                    _paramOutput->pushTime(getTarget());
                                    _paramOutput->push(compute());
                                }
                            } while (nextTarget());
                        }
                    }
                }
            protected:

                TimeIntervalListSPtr _timeIntervalList;

                TimeIntervalList::iterator _currentTimeInterval;

                ParamDataSpec<DataType>& _paramInput;

                ParamDataSpec<std::vector<OutputType>>*_paramOutput;

                double _windowtime;

                std::string _sampling;

                double _minWindow;

                double _maxWindow;

                double _target;

                bool _needInit;

                std::list<std::pair<double, DataType> > _mem;

b58d725b   Hacene SI HADJ MOHAND   adding plungin auto
287
288
            };

d466ae92   Hacene SI HADJ MOHAND   progress
289
290
291
292
293
            template<typename DataType, typename OutputType>
            class SpectrumFourier : public SpectrumBase<DataType, OutputType> {
            public:

                SpectrumFourier(Process& pProcess, TimeIntervalListSPtr pTimeIntervalList, ParamDataSpec<DataType >&paramInput, double windowtime, std::string sampling = "center") :
66bd97e1   Hacene SI HADJ MOHAND   ok for test
294
                SpectrumBase<DataType, OutputType>(pProcess, pTimeIntervalList, paramInput, windowtime, sampling = "center")
8fbdad94   Hacene SI HADJ MOHAND   computation cent...
295
                {
d466ae92   Hacene SI HADJ MOHAND   progress
296
                    _spectroSize = std::ceil(windowtime / paramInput.getMinSampling()) - 1;
d466ae92   Hacene SI HADJ MOHAND   progress
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
                }

                virtual ~SpectrumFourier() {
                }

                virtual void init() {
                    if (!_targets.empty()) {
                        SpectrumBase<DataType, OutputType>::setTarget(_targets.front());
                        SpectrumBase<DataType, OutputType>::setNeedInit(false);
                        _targets.pop_front();
                    }
                }

                virtual bool nextTarget() {
                    if (!_targets.empty()) {
                        bool res = SpectrumBase<DataType, OutputType>::setTarget(_targets.front());
                        _targets.pop_front();
                        while (!_mem.empty() && !SpectrumBase<DataType, OutputType>::inWindow(_mem.front().first)) {
                            _mem.pop_front();
                        }
                        return res;
                    }
                    return false;
                }

                virtual bool needToChangeTarget(double crtTime) {
                    return !SpectrumBase<DataType, OutputType>::needInit() && !SpectrumBase<DataType, OutputType>::inWindow(crtTime) && !_targets.empty();
                }

                virtual double getSampling() {
                    return SpectrumBase<DataType, OutputType>::getInputParamSampling();
                }

                virtual void pushData(double time, DataType& elem) {
8fbdad94   Hacene SI HADJ MOHAND   computation cent...
331
332
333
334
335
336
                    int pos = SpectrumBase<DataType, OutputType>::inMem(_mem, time);
                    if (pos != -1) {
                        auto it = _mem.begin();
                        std::advance(it, pos);
                        _mem.erase(it);
                    }
d466ae92   Hacene SI HADJ MOHAND   progress
337
338
                    _mem.push_back(std::make_pair(time, elem));
                    _targets.push_back(time);
8fbdad94   Hacene SI HADJ MOHAND   computation cent...
339

d466ae92   Hacene SI HADJ MOHAND   progress
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
                }

                virtual void resetFunc() {
                    _mem.clear();
                    _targets.clear();
                }

                bool isUniform() {
                    if (_mem.empty())
                        return false;

                    auto it_1 = _mem.begin();
                    it_1++;
                    for (auto it = _mem.begin(); it != _mem.end(); it++) {
                        if (*it != _mem.back()) {
                            if (it_1->first - it->first != getSampling())
                                return false;
                            it_1++;
                        }
                    }
                    return true;
                }

56581db8   Hacene SI HADJ MOHAND   sampling
363
                std::vector<OutputType> fft(std::vector<DataType> &xn, int N) {
d466ae92   Hacene SI HADJ MOHAND   progress
364
365
366
367
368
                    /**
                     * 
                     * @param N number of points in the dft
                     * @param xn date vector 
                     */
b58d725b   Hacene SI HADJ MOHAND   adding plungin auto
369

d466ae92   Hacene SI HADJ MOHAND   progress
370
371
372
373
                    int len = xn.size();
                    std::vector<OutputType> output;
                    output.resize(N);
                    output << NotANumber();
b58d725b   Hacene SI HADJ MOHAND   adding plungin auto
374

d466ae92   Hacene SI HADJ MOHAND   progress
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
                    double Xr;
                    double Xi;
                    int counter;

                    int k, n = 0;
                    for (k = 0; k < N; k++) {
                        Xr = 0;
                        Xi = 0;
                        counter = 0;
                        for (n = 0; n < len; n++) {
                            if (!isNAN(xn[n])) {
                                Xr = Xr + (OutputType) xn[n] * cos(2 * 3.141592 * k * n / N);
                                Xi = Xi + (OutputType) xn[n] * sin(2 * 3.141592 * k * n / N);
                                counter += 1;
                            }
                        }
                        if (counter == 0)
                            break;
                        output[k] = std::sqrt(Xr * Xr + Xi * Xi);
                    }
                    return output;
                }

                DataType computeInterpolation(std::list<std::pair<double, DataType> > & input, double time) {
                    double min_t = time - AVERAGE_TIME / 2.;
                    double max_t = time + AVERAGE_TIME / 2.;
56581db8   Hacene SI HADJ MOHAND   sampling
401
                    std::vector<std::pair<double, DataType> > values_for_mean;
d466ae92   Hacene SI HADJ MOHAND   progress
402
                    DataType nanVal;
56581db8   Hacene SI HADJ MOHAND   sampling
403
                    nanVal << NotANumber();
d466ae92   Hacene SI HADJ MOHAND   progress
404
405
406
                    std::pair<double, DataType> prev_value(NAN, nanVal);
                    std::pair<double, DataType> next_value(NAN, nanVal);
                    DataType value = nanVal;
56581db8   Hacene SI HADJ MOHAND   sampling
407
                    for (auto it = input.begin(); it != input.end(); ++it) {
d466ae92   Hacene SI HADJ MOHAND   progress
408
409
410
411
412
413
414
415
416
417
418
419
420
421
                        if (it->first == time) {
                            value = it->second;
                            return value;
                            break;
                        } else if (isNAN(it->second))
                            continue;
                        else if (it->first > max_t) {
                            next_value = *it;
                            break;
                        } else if (it->first < min_t) {
                            prev_value = *it;
                        } else {
                            values_for_mean.push_back(*it);
                        }
b58d725b   Hacene SI HADJ MOHAND   adding plungin auto
422
                    }
d466ae92   Hacene SI HADJ MOHAND   progress
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
                    if (!values_for_mean.empty()) {
                        //Compute mean
                        DataType sum = 0;
                        for (auto it = values_for_mean.begin(); it != values_for_mean.end(); ++it) {
                            sum += it->second;
                        }
                        value = sum / (DataType) values_for_mean.size();
                    } else {
                        if (!isNAN(prev_value.first) && !isNAN(next_value.first) && (next_value.first - prev_value.first <= MAX_GAP_SIZE)) {
                            //Compute interpolated value
                            value = prev_value.second + (time - prev_value.first) / (next_value.first - prev_value.first) * (next_value.second - prev_value.second);
                        }
                    }

                    return value;

                }

56581db8   Hacene SI HADJ MOHAND   sampling
441
                void standarize(std::list<std::pair<double, DataType> > & mem, int size, double target, double inputSampling, std::string sampling) {
56581db8   Hacene SI HADJ MOHAND   sampling
442
                    double time_;
8fbdad94   Hacene SI HADJ MOHAND   computation cent...
443
                    std::list<std::pair<double, DataType>> newMem;
56581db8   Hacene SI HADJ MOHAND   sampling
444
445
                    for (int i = 0; i < size; i++) {
                        switch (strToSamplingEnum[sampling]) {
d466ae92   Hacene SI HADJ MOHAND   progress
446
                            case samplingEnum::FORWARD:
56581db8   Hacene SI HADJ MOHAND   sampling
447
                                time_ = target + i*inputSampling;
d466ae92   Hacene SI HADJ MOHAND   progress
448
                                break;
d466ae92   Hacene SI HADJ MOHAND   progress
449
                            case samplingEnum::BACKWARD:
56581db8   Hacene SI HADJ MOHAND   sampling
450
                                time_ = target + (i - size + 1) * inputSampling;
d466ae92   Hacene SI HADJ MOHAND   progress
451
452
                                break;
                            default:
56581db8   Hacene SI HADJ MOHAND   sampling
453
                                time_ = target + (i - size / 2 + 1) * inputSampling;
d466ae92   Hacene SI HADJ MOHAND   progress
454
                                break;
d466ae92   Hacene SI HADJ MOHAND   progress
455
                        }
8fbdad94   Hacene SI HADJ MOHAND   computation cent...
456
457
458
459
460
461
                        if (SpectrumBase<DataType, OutputType>::inMem(mem, time_) != -1) {
                            DataType val_ = SpectrumBase<DataType, OutputType>::getData(time_);
                            if (isNAN(val_))
                                newMem.push_back(std::make_pair(time_, computeInterpolation(mem, time_)));
                            else
                                newMem.push_back(std::make_pair(time_, val_));
56581db8   Hacene SI HADJ MOHAND   sampling
462
                        } else {
8fbdad94   Hacene SI HADJ MOHAND   computation cent...
463
                            newMem.push_back(std::make_pair(time_, computeInterpolation(mem, time_)));
56581db8   Hacene SI HADJ MOHAND   sampling
464
                        }
56581db8   Hacene SI HADJ MOHAND   sampling
465
                    }
8fbdad94   Hacene SI HADJ MOHAND   computation cent...
466
                    if (newMem.empty() || newMem.size() != size)
56581db8   Hacene SI HADJ MOHAND   sampling
467
                        BOOST_THROW_EXCEPTION(AMDA::AMDA_exception() << AMDA::errno_code(AMDA_PROCESS_ERR) << AMDA::ex_msg(std::string("Spectrum:: ERROR at data interpolation")));
8fbdad94   Hacene SI HADJ MOHAND   computation cent...
468
469
                    mem = newMem;
                    mem.sort();
56581db8   Hacene SI HADJ MOHAND   sampling
470
471
                    return;
                }
8fbdad94   Hacene SI HADJ MOHAND   computation cent...
472
473

                int numberOfNanValues(std::list<std::pair<double, DataType> > & mem) {
56581db8   Hacene SI HADJ MOHAND   sampling
474
                    int res = 0;
8fbdad94   Hacene SI HADJ MOHAND   computation cent...
475
476
477
478
                    for (auto elt : mem) {
                        if (isNAN(elt.second))
                            res++;
                    }
56581db8   Hacene SI HADJ MOHAND   sampling
479
                    return res;
d466ae92   Hacene SI HADJ MOHAND   progress
480
481
482
483
484
485
486
                }

                std::vector<OutputType> compute() {
                    std::vector<OutputType> res;
                    res.resize(_spectroSize);
                    res << NotANumber();
                    bool is_uniform = isUniform();
8fbdad94   Hacene SI HADJ MOHAND   computation cent...
487
                    int nans = numberOfNanValues(_mem);
66bd97e1   Hacene SI HADJ MOHAND   ok for test
488
                    if (!is_uniform ||_mem.empty() || _mem.size() < 2 * _spectroSize / 3 || (_spectroSize - nans) < 2 * _spectroSize / 3)
d466ae92   Hacene SI HADJ MOHAND   progress
489
                        return res;
66bd97e1   Hacene SI HADJ MOHAND   ok for test
490
491
                    if (!is_uniform || _mem.size() <  _spectroSize  || (_spectroSize - nans) < _spectroSize)
                            standarize(_mem, _spectroSize, SpectrumBase<DataType, OutputType>::_target, SpectrumBase<DataType, OutputType>::getInputParamSampling(), SpectrumBase<DataType, OutputType>::_sampling);
d466ae92   Hacene SI HADJ MOHAND   progress
492
493

                    std::vector<DataType> inputData;
8fbdad94   Hacene SI HADJ MOHAND   computation cent...
494

d466ae92   Hacene SI HADJ MOHAND   progress
495
                    for (auto elt : _mem)
56581db8   Hacene SI HADJ MOHAND   sampling
496
                        inputData.push_back(elt.second);
8fbdad94   Hacene SI HADJ MOHAND   computation cent...
497

56581db8   Hacene SI HADJ MOHAND   sampling
498
                    res = fft(inputData, _spectroSize);
8fbdad94   Hacene SI HADJ MOHAND   computation cent...
499

56581db8   Hacene SI HADJ MOHAND   sampling
500
                    return res;
d466ae92   Hacene SI HADJ MOHAND   progress
501
502
503
504
505
506
507
508
                }

            protected:
                std::list<double> _targets;

                std::list<std::pair<double, DataType> > _mem;

                int _spectroSize;
8fbdad94   Hacene SI HADJ MOHAND   computation cent...
509
                
d466ae92   Hacene SI HADJ MOHAND   progress
510
511
512
            };


b58d725b   Hacene SI HADJ MOHAND   adding plungin auto
513

b58d725b   Hacene SI HADJ MOHAND   adding plungin auto
514

b58d725b   Hacene SI HADJ MOHAND   adding plungin auto
515
516
517
518
519
520
        } // end Spectrum
    } // end Parameters
} // end AMDA


#endif /* SPECTRUM_HH */